Psyllid ID: psy1095

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MAIPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII
Secondary Structure (PSIPRED)
cccccccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEccccEEEEEEcccEEEEccccEEEEccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEEcccEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEcccccccccEEEEccccEEEEccccEEEEEEEEEEcccccEEEEEEccEEccccccccEEEEEccccccEEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEEcccccccccccEEEEEEccEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEcccccEEEEEEEcccccEEEEEEEcccccccEEEEEcccccEEEEEEcccEEEcccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEccccEEEEEEcccEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEEEcccccccccccccccccEEEEEccEEEEEEEEEcccccccEEEEEEccEEEcccccEEEEEEEEEEEcccEEEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEccccccccccccEEEEEEccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEccccc
Coil and Loop (DISEMBL)
maipeekenslsvkltrpsglmsghstprstprstpprsisplssrtftpyslnsairtrrltssprfyavphnkicdlgdtvrfqcsvtgqpapwtswskdgkpatpnarvtirekedLRFLEISEVtledaglytikvennygsveatarleimdpraiisrpkvlnglenlrccdgdsvtfecqvqvvppndhdiswfrnnrlikldsdmkpevqvdskeNLVIARLkiphvypedegeFTCRVANELGEVVTSACLIVDVvkgkdltsdgrlniitvggtsvltieditgddsgkyQVHVsnqhgsdscyASVAVEGRKII
Flexible Loop (DISEMBL)
maipeekenslsvkltrpsglmsghstprstprstpprsisplssrtftpyslnsairtrrltssprfyaVPHNKICDLGDTVRFQCSVTGqpapwtswskdgkpatpnarvtirekedlrfLEISevtledaglytikvennygsveatarleimdprAIISRPKVLNGLENLRCCDGDSVTFECQVQvvppndhdiswfRNNRLIKLDSDMKPEVQVDSKENLVIARLKiphvypedeGEFTCRVANELGEVVTSACLIVDVVkgkdltsdgrlniitvggtsvlTIEDITGDDSGKYQVHVsnqhgsdscyasvAVEGRKII
Low Complexity Region (SEG)
MAIPEEKENSLSVKLTRPSGLMSGHstprstprstpprsisplssrtFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII
Disordered region (IsUnstruct)
********************************************************IRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSW************VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD****VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHV*********Y***********
Disordered Region (DISOPRED)
MAIP************************************************************SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE***DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDL**D****IITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK**
Disordered Region (DISEMBL)
************VKLTRPS**********************PLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII
Disordered Region (DISPRO)
MAI*EEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q8WZ42	34350	Titin OS=Homo sapiens GN=	yes	N/A	0.729	0.006	0.263	2e-20
Q96JA1	1093	Leucine-rich repeats and	no	N/A	0.603	0.179	0.291	5e-18
A2ASS6	35213	Titin OS=Mus musculus GN=	yes	N/A	0.729	0.006	0.253	2e-17
Q15772	3267	Striated muscle preferent	no	N/A	0.603	0.059	0.283	2e-17
Q63638	3259	Striated muscle-specific	no	N/A	0.603	0.060	0.283	2e-17
Q62407	3262	Striated muscle-specific	no	N/A	0.603	0.060	0.283	5e-17
P70193	1091	Leucine-rich repeats and	no	N/A	0.603	0.179	0.286	5e-17
O01761	8081	Muscle M-line assembly pr	no	N/A	0.686	0.027	0.247	1e-16
Q5VST9	7968	Obscurin OS=Homo sapiens	no	N/A	0.606	0.024	0.289	4e-16
Q967D7	1531	Protein turtle OS=Drosoph	no	N/A	0.56	0.118	0.294	5e-16

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 125/296 (42%), Gaps = 59/296 (19%)

Query: 66   PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
            P F + P +    +G   +F C+VTG P   T W KDG   +P+    I + E+   LE+
Sbjct: 4478 PTFLSRPKSLTTFVGKAAKFICTVTGTPVIETIWQKDGAALSPSPNWRISDAENKHILEL 4537

Query: 126  SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
            S +T++D G+Y+ K  N +G+    A L I+D      +P  +  LE ++      V  E
Sbjct: 4538 SNLTIQDRGVYSCKASNKFGADICQAELIIID------KPHFIKELEPVQSAINKKVHLE 4591

Query: 186  CQVQVVPPNDHD----ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
            CQV      D D    ++W ++ + +    D K  +  + K    IA L+IP    +D G
Sbjct: 4592 CQV------DEDRKVTVTWSKDGQKLPPGKDYK--ICFEDK----IATLEIPLAKLKDSG 4639

Query: 242  EFTCRVANELGEVVTSACLIVD-------------------------VVKG--------- 267
             + C  +NE G    SA + V                           +KG         
Sbjct: 4640 TYVCTASNEAGSSSCSATVTVREPPSFVKKVDPSYLMLPGESARLHCKLKGSPVIQVTWF 4699

Query: 268  ---KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
               K+L+    + +  V   ++L I D+  +DSG Y     N  GSDSC   + ++
Sbjct: 4700 KNNKELSESNTVRMYFVNSEAILDITDVKVEDSGSYSCEAVNDVGSDSCSTEIVIK 4755

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q96JA1|LRIG1_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Homo sapiens GN=LRIG1 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 27/223 (12%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK---PATPNARVTIREKEDLRF 122
           P F   PH+         R +C+ TG P P  +W KDG    PA    R+ +   +D+ F
Sbjct: 599 PSFTKTPHDITIRTTTMARLECAATGHPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFF 658

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
             I++V ++DAG+Y+   +N+ GS+ A A L +++       P ++  LE+     G++V
Sbjct: 659 --ITDVKIDDAGVYSCTAQNSAGSISANATLTVLE------TPSLVVPLEDRVVSVGETV 710

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDS--DMKPEVQVDSKENLVIARLKIPHVYPEDE 240
             +C+    PP    I+WF+ +R + L     + P+ Q+          L + +V  ED 
Sbjct: 711 ALQCKATGNPPP--RITWFKGDRPLSLTERHHLTPDNQL----------LVVQNVVAEDA 758

Query: 241 GEFTCRVANELGEVVTSACLIVDVVKG--KDLTSDGRLNIITV 281
           G +TC ++N LG     + L V    G  KD T+ G   I  V
Sbjct: 759 GRYTCEMSNTLGTERAHSQLSVLPAAGCRKDGTTVGIFTIAVV 801

Act as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.

Homo sapiens (taxid: 9606)

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 123/296 (41%), Gaps = 59/296 (19%)

Query: 66   PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
            P F + P      +G   +F C+V+G P     W KDG   +P+    + + ++   LE+
Sbjct: 4439 PTFLSRPKALTTFVGKAAKFLCTVSGTPVIEIIWQKDGAALSPSPDCRVTDADNKHSLEL 4498

Query: 126  SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
            S +T++D G+Y+ K  N +G+    A L I+D      +P  +  LE ++      +  E
Sbjct: 4499 SNLTVQDRGIYSCKASNKFGADICQAELTIID------KPHFIKELEAVQSAINKKIHLE 4552

Query: 186  CQVQVVPPNDHD----ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
            CQV      D D    I+W ++ + +    D K  +  + K    IA L+IP    +D G
Sbjct: 4553 CQV------DEDRKVTITWSKDGQKLPAGKDYK--IYFEDK----IASLEIPLAKLKDSG 4600

Query: 242  EFTCRVANEL-----------------------------GEVVTSACL-----IVDVV-- 265
             +TC  +NE                              GE     C      ++ V   
Sbjct: 4601 TYTCTASNEAGSSSSSAAVAVREPPSFVKKVDPSYLMLPGESARLHCKLKGSPVIQVTWF 4660

Query: 266  -KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
               K+L+    + +  V   ++L I D+  DDSG Y    +N  GSDSC   V ++
Sbjct: 4661 KNNKELSESNTVRMSFVNSEAILDITDVKVDDSGTYSCEATNDVGSDSCSTEVVIK 4716

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed protein kinase OS=Homo sapiens GN=SPEG PE=1 SV=4

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 95/233 (40%), Gaps = 37/233 (15%)

Query: 80   GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
            G   RF C ++G P P  +W+  G P   +  + +R+   L  L I+ V  ED GLY + 
Sbjct: 1078 GRAARFDCKISGTPPPVVTWTHFGCPMEESENLRLRQDGGLHSLHIAHVGSEDEGLYAVS 1137

Query: 140  VENNYGSVEATARLEIMDPRAI-------------------------ISRPKVLNGLENL 174
              N +G    +A+L + +PR                           +S P  L  L++L
Sbjct: 1138 AVNTHGQAHCSAQLYVEEPRTAASGPSSKLEKMPSIPEEPEQGELERLSIPDFLRPLQDL 1197

Query: 175  RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
                      ECQV  +P     ISWF N   I+   D +     D      + RL  P 
Sbjct: 1198 EVGLAKEAMLECQVTGLP--YPTISWFHNGHRIQSSDDRRMTQYRD------VHRLVFPA 1249

Query: 235  VYPEDEGEFTCRVANELGEVVTSACLIV-DVVKGKDLTSDGRLNIITVGGTSV 286
            V P+  G +   +AN+LG+    A L V DVV G     DG   ++ V G  V
Sbjct: 1250 VGPQHAGVYKSVIANKLGKAACYAHLYVTDVVPGP---PDGAPQVVAVTGRMV 1299

Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q63638|SPEG_RAT Striated muscle-specific serine/threonine-protein kinase OS=Rattus norvegicus GN=Speg PE=2 SV=2

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 94/233 (40%), Gaps = 37/233 (15%)

Query: 80   GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
            G   R  C ++G P P  +W+  G P   +  + +R+   L  L I+ V  ED GLY + 
Sbjct: 1083 GRAARLDCKISGTPPPSVTWTHFGHPVNESENLRLRQDGGLHSLHIARVGSEDEGLYEVS 1142

Query: 140  VENNYGSVEATARLEIMDPRAI-------------------------ISRPKVLNGLENL 174
              N +G    +A+L + +PR                           +S P  L  L++L
Sbjct: 1143 ATNTHGQAHCSAQLYVEEPRTAASGPSSKLEKMPSIPEEPEHGDLERLSIPDFLRPLQDL 1202

Query: 175  RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
                      ECQV  +P     ISWF N   I+   D +     D      I RL  P 
Sbjct: 1203 EVGLAKEAMLECQVTGLP--YPTISWFHNGHRIQSSDDRRMTQYRD------IHRLVFPA 1254

Query: 235  VYPEDEGEFTCRVANELGEVVTSACLIV-DVVKGKDLTSDGRLNIITVGGTSV 286
            V P+  G +   +AN+LG+    A L V DVV G     DG   ++ V G  V
Sbjct: 1255 VGPQHAGVYKSVIANKLGKAACYAHLYVTDVVPGP---PDGAPQVVAVTGRMV 1304

Isoform 2 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q62407|SPEG_MOUSE Striated muscle-specific serine/threonine-protein kinase OS=Mus musculus GN=Speg PE=1 SV=2

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 93/233 (39%), Gaps = 37/233 (15%)

Query: 80   GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
            G   R  C ++G P P  +W+  G P      + +R+   L  L I+ V  ED GLY + 
Sbjct: 1083 GRAARLDCKISGTPPPSVTWTHFGHPVNEGDNLRLRQDGGLHSLHIARVGSEDEGLYEVS 1142

Query: 140  VENNYGSVEATARLEIMDPRAI-------------------------ISRPKVLNGLENL 174
              N +G    +A+L + +PR                           +S P  L  L++L
Sbjct: 1143 ATNTHGQAHCSAQLYVEEPRTAASGPSSKLEKMPSIPEEPEHGDLERLSIPDFLRPLQDL 1202

Query: 175  RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
                      ECQV  +P     ISWF N   I+   D +     D      I RL  P 
Sbjct: 1203 EVGLAKEAMLECQVTGLP--YPTISWFHNGHRIQSSDDRRMTQYRD------IHRLVFPA 1254

Query: 235  VYPEDEGEFTCRVANELGEVVTSACLIV-DVVKGKDLTSDGRLNIITVGGTSV 286
            V P+  G +   +AN+LG+    A L V DVV G     DG   ++ V G  V
Sbjct: 1255 VGPQHAGVYKSVIANKLGKAACYAHLYVTDVVPGP---PDGAPEVVAVTGRMV 1304

Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P70193|LRIG1_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Mus musculus GN=Lrig1 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 27/223 (12%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK---PATPNARVTIREKEDLRF 122
           P F  +PH+     G T R +C+ TG P P  +W KDG    PA    R+ +   +D+ F
Sbjct: 601 PSFTKIPHDIAIRTGTTARLECAATGHPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFF 660

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
             I++V ++D G+Y+   +N+ GSV A A L +++       P +   LE+     G++V
Sbjct: 661 --ITDVKIDDMGVYSCTAQNSAGSVSANATLTVLE------TPSLAVPLEDRVVTVGETV 712

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDS--DMKPEVQVDSKENLVIARLKIPHVYPEDE 240
            F+C+    P     I+W +  R + L       P  Q+   +N++I          +D 
Sbjct: 713 AFQCKATGSPTP--RITWLKGGRPLSLTERHHFTPGNQLLVVQNVMI----------DDA 760

Query: 241 GEFTCRVANELGEVVTSACLIVDVVKG--KDLTSDGRLNIITV 281
           G +TC ++N LG     + L +    G  KD T+ G   I  V
Sbjct: 761 GRYTCEMSNPLGTERAHSQLSILPTPGCRKDGTTVGIFTIAVV 803

Act as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.

Mus musculus (taxid: 10090)

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 52/275 (18%)

Query: 89  VTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSV 147
           VTG P P  +W KD      + R T    ED  F + I  V + D G YT    N YG  
Sbjct: 571 VTGYPLPDITWYKDDVQLHEDERHTFYSDEDGFFAMTIDPVQVTDTGRYTCMATNEYGQA 630

Query: 148 EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207
             +A   ++      + P  +  L +  C +GD + FEC+V+  P  + ++ W  +++ +
Sbjct: 631 STSAFFRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWP--EPELVWLVDDQPL 688

Query: 208 KLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV--- 264
           +   D +  +Q D +     A+L+I    P+D G +T ++ NE G + + A L V     
Sbjct: 689 RPSHDFR--LQYDGQ----TAKLEIRDAQPDDTGVYTVKIQNEFGSIESKAELFVQADPD 742

Query: 265 ----------------------------------------VKGKDLTSDGRLNIITVGGT 284
                                                   + GK L+   ++  I+  G 
Sbjct: 743 KNHVAPEFQATIEYVECDEGEEVRFKSVITGDPNPEIIWFINGKPLSESEKVKFISEDGI 802

Query: 285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
            +LTI+D+T    G      SN+ GS SC   + V
Sbjct: 803 CILTIKDVTRHFDGMVTCQGSNRLGSASCDGRLKV 837

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 7/204 (3%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
           + + +PRF   P   +  +G      C + G P P  SW KD +P    AR  + +  DL
Sbjct: 5   QFSGAPRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSWEKDQQPVAAGARFRLAQDGDL 64

Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR-PKVLNGLENLRCCDG 179
             L I ++ L D+G Y  +  N  G   A   L++    A   + P  L    ++R  +G
Sbjct: 65  YRLTILDLALGDSGQYVCRARNAIGEAFAAVGLQVDAEAACAEQAPHFLLRPTSIRVREG 124

Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
              TF C+V   P     +SW ++ R  +L     P V+V+  E    + L+I    P D
Sbjct: 125 SEATFRCRVGGSP--RPAVSWSKDGR--RLGEPDGPRVRVE--ELGEASALRIRAARPRD 178

Query: 240 EGEFTCRVANELGEVVTSACLIVD 263
            G +  R  N LG    +A L+VD
Sbjct: 179 GGTYEVRAENPLGAASAAAALVVD 202

Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle. Isoform 3 together with ANK1 isoform Mu17/Ank1.5 may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 15/197 (7%)

Query: 66  PRFYAVPHNKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           PRF   P + I  +LGD++   C   G P P   W KD  P  P+  V I    D   L 
Sbjct: 253 PRFSVTPEDIIYVNLGDSIILNCQADGTPTPEILWYKDANPVDPSPTVGIF--NDGTELR 310

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
           IS +  ED G YT    N  G V  TAR+ I     I+  P     LE      G+ V F
Sbjct: 311 ISTIRHEDIGEYTCIARNGEGQVSHTARVIIAGGAVIMVPPTNQTKLE------GEKVIF 364

Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
            C+ + +P N   + W+R    ++  + ++  V +    +L+I  +K     P+D G++ 
Sbjct: 365 SCEAKAMPGNV-TVRWYREGSPVREVAALETRVTIRKDGSLIINPIK-----PDDSGQYL 418

Query: 245 CRVANELGEVVTSACLI 261
           C V N +G+  +++  +
Sbjct: 419 CEVTNGIGDPQSASAYL 435

Essential protein that plays a role in the establishment of coordinated motor control.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
242022544	6699	myosin light chain kinase, putative [Ped	0.76	0.036	0.443	3e-52
350422387	10117	PREDICTED: hypothetical protein LOC10074	0.775	0.024	0.412	6e-48
307204648	9315	Myosin light chain kinase, smooth muscle	0.775	0.027	0.416	1e-44
307172721	7605	Myosin light chain kinase, smooth muscle	0.775	0.033	0.393	2e-44
198461467	4470	GA25129 [Drosophila pseudoobscura pseudo	0.473	0.034	0.515	9e-44
442623881	7944	Stretchin-Mlck, isoform V [Drosophila me	0.470	0.019	0.521	9e-44
442623875	8216	Stretchin-Mlck, isoform S [Drosophila me	0.470	0.018	0.521	1e-43
442623877	7905	Stretchin-Mlck, isoform T [Drosophila me	0.470	0.019	0.521	1e-43
442623879	8255	Stretchin-Mlck, isoform U [Drosophila me	0.470	0.018	0.521	1e-43
195175954	726	GL20658 [Drosophila persimilis] gi|19410	0.473	0.212	0.515	3e-43

>gi|242022544|ref|XP_002431700.1| myosin light chain kinase, putative [Pediculus humanus corporis] gi|212517008|gb|EEB18962.1| myosin light chain kinase, putative [Pediculus humanus corporis]

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/275 (44%), Positives = 164/275 (59%), Gaps = 28/275 (10%)

Query: 3    IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRL 62
            +PEEKEN LS +LTR S +MS  STPRSTPR+TP RSISP +S ++    L++  R +RL
Sbjct: 5349 VPEEKENLLSRQLTRQSDIMSNASTPRSTPRTTPSRSISPFTSSSWKE-PLSTTARQKRL 5407

Query: 63   T-SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
              + P+FYAVPHN++ + G+T+RFQC+V+G P PW +W KD    TP  R+ I EK+DL+
Sbjct: 5408 KITPPKFYAVPHNRVAEEGETIRFQCAVSGHPTPWVTWDKDNSTVTPTRRINISEKDDLK 5467

Query: 122  FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS--------------RPKV 167
             LEI EVT+EDAGLY I VEN  G VEATARL+++  R  ++              R ++
Sbjct: 5468 ILEIEEVTVEDAGLYRITVENEVGRVEATARLDVIGARGHMTKAQSVRSWSSSPSFRRRI 5527

Query: 168  LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI 227
             N +  L    GD+VT  C V   P  D   SW+R   LI   +   P    D K    I
Sbjct: 5528 GNSVGRL----GDNVTLACDVVSSP--DTITSWYREGELIVKTNKTTP--TWDGK----I 5575

Query: 228  ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            A L+I ++  ED G ++C   N  G+   SA L+V
Sbjct: 5576 AMLEIDNLEEEDAGVYSCVAENNAGKCYCSAELVV 5610

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422387|ref|XP_003493149.1| PREDICTED: hypothetical protein LOC100743398 [Bombus impatiens]

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 115/279 (41%), Positives = 161/279 (57%), Gaps = 27/279 (9%)

Query: 3    IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRL 62
            +PE KEN LS +LTRP+GL+S  STPRSTPRSTP RS+SP  S      S     R+R +
Sbjct: 8480 VPEGKENVLSQRLTRPAGLLSAGSTPRSTPRSTPIRSLSPAVSHGRELRSPQLLPRSRSM 8539

Query: 63   T-----SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK 117
            +     S P+FYAVPHN++ + G+TVRFQC+V G P+PW  W K+G  ATP AR++I+E+
Sbjct: 8540 SRRPKISPPKFYAVPHNRVVEEGETVRFQCAVVGHPSPWVKWDKNGIIATPTARISIKER 8599

Query: 118  EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD-------PRAIISR------ 164
            +D++ LEI EVT EDAGLY + VEN+YG +EA+ARLEI++        R I +R      
Sbjct: 8600 DDVKILEIVEVTQEDAGLYRVIVENDYGRIEASARLEIINRQLLGSVARTIRTRSASPRT 8659

Query: 165  -PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
             P     L +        +  +C ++  P      +WFRN R       ++  ++V    
Sbjct: 8660 YPSFSRSLLDTTSRINGRLYLDCGIRGTP--SLTPTWFRNGR------PLERSIRVKRYF 8711

Query: 224  NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            +   A+++I  V   D GE+TC   N LG    S  + V
Sbjct: 8712 DGTTAKVEILKVKASDAGEYTCVATNVLGSTKNSCQVTV 8750

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204648|gb|EFN83270.1| Myosin light chain kinase, smooth muscle [Harpegnathos saltator]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/276 (41%), Positives = 160/276 (57%), Gaps = 24/276 (8%)

Query: 3    IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSS--RTF-TPYSLNSAIRT 59
            +PE KEN LS +LTRP GL+S  STPRSTPRSTP RS+SP  S  R F +P  L     +
Sbjct: 7753 VPEGKENILSQRLTRPIGLLSAGSTPRSTPRSTPIRSLSPAVSHGREFRSPQMLARRGTS 7812

Query: 60   RR-LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE 118
            RR     P+FYAVPHN++   G+TVRFQC+V G PAPW  W K+G   TP+ARV+I+E++
Sbjct: 7813 RRPKVCPPKFYAVPHNRLVQEGETVRFQCAVVGHPAPWVRWDKNGTIVTPSARVSIKERD 7872

Query: 119  DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD-----PRAIISR---PKVLNG 170
            D++ LEI +V  EDA LY I  EN++G +EA+ARLE++       R I +R   P+    
Sbjct: 7873 DVKILEIVDVMREDAALYRITAENDFGRIEASARLEVISRYESTSRTIRTRSASPRTYPT 7932

Query: 171  LE-NLRCCDG---DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
             + +L    G     +  EC+++  P      +W+RN R ++  S +K         +  
Sbjct: 7933 FDRSLLPTTGRINGRLQLECRMRGTPSVTP--TWYRNGRPLERSSRIKRYF------DGA 7984

Query: 227  IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
             A+++I  V   D GE+TC   N LG    S  + V
Sbjct: 7985 TAKIEISKVKASDAGEYTCVATNVLGSTRNSCQVTV 8020

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172721|gb|EFN64027.1| Myosin light chain kinase, smooth muscle [Camponotus floridanus]

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/277 (39%), Positives = 158/277 (57%), Gaps = 25/277 (9%)

Query: 3    IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSS--RTF-TPYSL--NSAI 57
            +PE KE++LS +LTRP GL+S  STPRSTPRSTP RS+SP  S  R F +P  L      
Sbjct: 6106 VPEGKESTLSQRLTRPVGLLSAGSTPRSTPRSTPIRSLSPAVSHGREFRSPQVLPRGGTS 6165

Query: 58   RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK 117
              R     P+FYAVPHN++   G+TVRFQC+V G PAPW  W K+G   TP+ R++I+E+
Sbjct: 6166 SKRPKVCPPKFYAVPHNRLVQEGETVRFQCAVVGHPAPWIRWDKNGTIVTPSTRISIKER 6225

Query: 118  EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD-----PRAIISR-------P 165
            +D++ LEI +V  EDAGLY +  EN++G +EA+ARLE++       R I +R       P
Sbjct: 6226 DDVKILEIVDVMREDAGLYRVTAENDFGRIEASARLEVISRYESTSRTIRTRSASPRTYP 6285

Query: 166  KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL 225
                 L +      + +  EC+++  P      +W+RN R ++  + +K         + 
Sbjct: 6286 SFDRSLLSTTSRISERLQLECRIRGTPSVTP--TWYRNGRPLERSARIKRYF------DG 6337

Query: 226  VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              A+++I  V   D GE+TC   N LG   +S  + V
Sbjct: 6338 TTAKIEISKVKASDAGEYTCVATNVLGSTKSSCQVTV 6374

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198461467|ref|XP_002139005.1| GA25129 [Drosophila pseudoobscura pseudoobscura] gi|198137352|gb|EDY69563.1| GA25129 [Drosophila pseudoobscura pseudoobscura]

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 118/161 (73%), Gaps = 7/161 (4%)

Query: 3    IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLN-SAIRTRR 61
            +PEEKEN LS +LTRPSGL+S HSTPRSTPRSTP RS SP+   ++   S++ S +  RR
Sbjct: 3075 VPEEKENMLSRQLTRPSGLLSAHSTPRSTPRSTPNRSFSPMRRLSYRTSSIDLSGVAERR 3134

Query: 62   LT------SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR 115
             +      ++P+F A+P+N++ + GD VRFQC++ G P PW +W KDG   TP  R+ ++
Sbjct: 3135 RSDARNAFTAPKFLAIPYNRVVEEGDNVRFQCAIGGHPTPWATWDKDGLIVTPTTRIAVK 3194

Query: 116  EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
            E +DLRF+EI EV+ +DAGLY I +EN++G +EATARL+++
Sbjct: 3195 EVDDLRFIEIDEVSFDDAGLYRITLENDFGRIEATARLDVI 3235

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442623881|ref|NP_725510.2| Stretchin-Mlck, isoform V [Drosophila melanogaster] gi|440214444|gb|AAF58087.3| Stretchin-Mlck, isoform V [Drosophila melanogaster]

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 116/161 (72%), Gaps = 8/161 (4%)

Query: 3    IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPL--SSRTFTPYSLNSAIRTR 60
            +PEEKEN LS +L RPSGL+S HSTPRSTPRSTP RS SPL  S RT +   L+     R
Sbjct: 6870 VPEEKENMLSRQLARPSGLLSAHSTPRSTPRSTPARSFSPLRLSYRT-SSIDLSGVAERR 6928

Query: 61   R-----LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR 115
            R       ++P+F A+P+N++ + GD+VRFQC+++G P PW +W KDG   TP  R+ ++
Sbjct: 6929 RSDARNAITAPKFLAIPYNRVVEEGDSVRFQCAISGHPTPWATWDKDGLIVTPTPRIAVK 6988

Query: 116  EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
            E +DLR +EI EVT +DAGLY + +EN++G +EATARL+++
Sbjct: 6989 EIDDLRIIEIDEVTFDDAGLYRVTLENDFGRIEATARLDVI 7029

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442623875|ref|NP_001261018.1| Stretchin-Mlck, isoform S [Drosophila melanogaster] gi|440214441|gb|AGB93550.1| Stretchin-Mlck, isoform S [Drosophila melanogaster]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 116/161 (72%), Gaps = 8/161 (4%)

Query: 3    IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPL--SSRTFTPYSLNSAIRTR 60
            +PEEKEN LS +L RPSGL+S HSTPRSTPRSTP RS SPL  S RT +   L+     R
Sbjct: 6831 VPEEKENMLSRQLARPSGLLSAHSTPRSTPRSTPARSFSPLRLSYRT-SSIDLSGVAERR 6889

Query: 61   R-----LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR 115
            R       ++P+F A+P+N++ + GD+VRFQC+++G P PW +W KDG   TP  R+ ++
Sbjct: 6890 RSDARNAITAPKFLAIPYNRVVEEGDSVRFQCAISGHPTPWATWDKDGLIVTPTPRIAVK 6949

Query: 116  EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
            E +DLR +EI EVT +DAGLY + +EN++G +EATARL+++
Sbjct: 6950 EIDDLRIIEIDEVTFDDAGLYRVTLENDFGRIEATARLDVI 6990

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442623877|ref|NP_001188955.2| Stretchin-Mlck, isoform T [Drosophila melanogaster] gi|440214442|gb|ADV37201.2| Stretchin-Mlck, isoform T [Drosophila melanogaster]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 116/161 (72%), Gaps = 8/161 (4%)

Query: 3    IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPL--SSRTFTPYSLNSAIRTR 60
            +PEEKEN LS +L RPSGL+S HSTPRSTPRSTP RS SPL  S RT +   L+     R
Sbjct: 6831 VPEEKENMLSRQLARPSGLLSAHSTPRSTPRSTPARSFSPLRLSYRT-SSIDLSGVAERR 6889

Query: 61   R-----LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR 115
            R       ++P+F A+P+N++ + GD+VRFQC+++G P PW +W KDG   TP  R+ ++
Sbjct: 6890 RSDARNAITAPKFLAIPYNRVVEEGDSVRFQCAISGHPTPWATWDKDGLIVTPTPRIAVK 6949

Query: 116  EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
            E +DLR +EI EVT +DAGLY + +EN++G +EATARL+++
Sbjct: 6950 EIDDLRIIEIDEVTFDDAGLYRVTLENDFGRIEATARLDVI 6990

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442623879|ref|NP_001261019.1| Stretchin-Mlck, isoform U [Drosophila melanogaster] gi|440214443|gb|AGB93551.1| Stretchin-Mlck, isoform U [Drosophila melanogaster]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 116/161 (72%), Gaps = 8/161 (4%)

Query: 3    IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPL--SSRTFTPYSLNSAIRTR 60
            +PEEKEN LS +L RPSGL+S HSTPRSTPRSTP RS SPL  S RT +   L+     R
Sbjct: 6870 VPEEKENMLSRQLARPSGLLSAHSTPRSTPRSTPARSFSPLRLSYRT-SSIDLSGVAERR 6928

Query: 61   R-----LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR 115
            R       ++P+F A+P+N++ + GD+VRFQC+++G P PW +W KDG   TP  R+ ++
Sbjct: 6929 RSDARNAITAPKFLAIPYNRVVEEGDSVRFQCAISGHPTPWATWDKDGLIVTPTPRIAVK 6988

Query: 116  EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
            E +DLR +EI EVT +DAGLY + +EN++G +EATARL+++
Sbjct: 6989 EIDDLRIIEIDEVTFDDAGLYRVTLENDFGRIEATARLDVI 7029

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195175954|ref|XP_002028647.1| GL20658 [Drosophila persimilis] gi|194108185|gb|EDW30228.1| GL20658 [Drosophila persimilis]

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 118/161 (73%), Gaps = 7/161 (4%)

Query: 3   IPEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLN-SAIRTRR 61
           +PEEKEN LS +LTRPSGL+S HSTPRSTPRSTP RS SP+   ++   S++ S +  RR
Sbjct: 334 VPEEKENMLSRQLTRPSGLLSAHSTPRSTPRSTPNRSFSPMRRLSYRTSSIDLSGVAERR 393

Query: 62  LT------SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR 115
            +      ++P+F A+P+N++ + GD VRFQC++ G P PW +W KDG   TP  R+ ++
Sbjct: 394 RSDARNAFTAPKFLAIPYNRVVEEGDNVRFQCAIGGHPTPWATWDKDGLIVTPTTRIAVK 453

Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
           E +DLRF+EI EV+ +DAGLY I +EN++G +EATARL+++
Sbjct: 454 EVDDLRFIEIDEVSFDDAGLYRITLENDFGRIEATARLDVI 494

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
FB|FBgn0265045	9270	Strn-Mlck "Stretchin-Mlck" [Dr	0.766	0.026	0.311	7.7e-39
UNIPROTKB|F1PV45	35	F1PV45 "Uncharacterized protei	0.609	5.657	0.289	4.3e-23
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.609	5.823	0.285	2.8e-22
UNIPROTKB|Q8WZ42	34	TTN "Titin" [Homo sapiens (tax	0.609	5.823	0.289	5.7e-22
UNIPROTKB|E2RLJ0	5738	OBSCN "Uncharacterized protein	0.596	0.033	0.300	6.2e-21
UNIPROTKB|J9JHM0	7923	OBSCN "Uncharacterized protein	0.596	0.024	0.300	1.2e-20
ZFIN|ZDB-GENE-030113-2	32	ttna "titin a" [Danio rerio (t	0.683	6.937	0.327	1.5e-20
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.68	0.024	0.311	8.7e-20
FB|FBgn0010473	1531	tutl "turtle" [Drosophila mela	0.566	0.120	0.31	1e-19
WB|WBGene00006820	8081	unc-89 [Caenorhabditis elegans	0.704	0.028	0.287	1.1e-19

FB|FBgn0265045 Strn-Mlck "Stretchin-Mlck" [Drosophila melanogaster (taxid:7227)]

 Score = 367 (134.2 bits), Expect = 7.7e-39, Sum P(2) = 7.7e-39
 Identities = 85/273 (31%), Positives = 143/273 (52%)

Query:     3 IPEEKENSLSVKLTRPSGLMSGHXXXXXXXXXXXXXXXXXXXXXXFTPYSLNSAIRTRRL 62
             +PEEKEN LS +L RPSGL+S H                       T     S +  RR 
Sbjct:  7885 VPEEKENMLSRQLARPSGLLSAHSTPRSTPRSTPARSFSPLRLSYRTSSIDLSGVAERRR 7944

Query:    63 T------SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE 116
             +      ++P+F A+P+N++ + GD+VRFQC+++G P PW +W KDG   TP  R+ ++E
Sbjct:  7945 SDARNAITAPKFLAIPYNRVVEEGDSVRFQCAISGHPTPWATWDKDGLIVTPTPRIAVKE 8004

Query:   117 KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN-----GL 171
              +DLR +EI EVT +DAGLY + +EN++G +EATARL+++        P V +       
Sbjct:  8005 IDDLRIIEIDEVTFDDAGLYRVTLENDFGRIEATARLDVIRSSRYSKSPSVRSVRASSSR 8064

Query:   172 ENL---RCCDGDSVTFECQVQVVP----PNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
              N    R   G S     ++ +       +   + ++ N+  ++L++  +  + +     
Sbjct:  8065 RNAHLYRRIMGPSTAIGGRMALASGYRGSSVPSVRFYHND--VELEASERVHILLQDSMA 8122

Query:   225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
             L+I    + +V  EDEG++TC ++ +   ++TS
Sbjct:  8123 LLI----VDNVTREDEGQYTCIISGDHDPLITS 8151

GO:0006468 "protein phosphorylation" evidence=IEA;ISS;NAS

GO:0004687 "myosin light chain kinase activity" evidence=ISS;IDA

GO:0004683 "calmodulin-dependent protein kinase activity" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 233 (87.1 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 62/214 (28%), Positives = 101/214 (47%)

Query:    51 YSLNSAIRTRRLTSS--PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
             Y   S   T  +T +  P FY+ P +    +G T +F C+V G P   T W KDG   +P
Sbjct:  4444 YGSVSCTATLTVTEAYPPTFYSRPKSVTTFVGKTAKFLCTVLGTPVIETIWQKDGAALSP 4503

Query:   109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVL 168
             +    I E E+   LE+S +T++D G+Y+ K  N +G+    A L I+D      +P  +
Sbjct:  4504 SPNRKISEAENKHSLELSNLTIQDRGVYSCKASNKFGADICQAELIIID------KPHFI 4557

Query:   169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIA 228
               LE ++      +  ECQV         ++W ++ + +    D K  +  + K    IA
Sbjct:  4558 KELEPVQSAINKKIRLECQVD--EDRKVTVTWNKDGQKLPPGKDHK--IYFEDK----IA 4609

Query:   229 RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              L+IP    +D G + C  +NE G   +SA + +
Sbjct:  4610 SLEIPLAKLKDSGTYVCTASNEAGSSSSSATVTI 4643

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 229 (85.7 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
 Identities = 61/214 (28%), Positives = 100/214 (46%)

Query:    51 YSLNSAIRTRRLTSS--PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
             Y   S   T  +T +  P F++ P +    +G   +F C+VTG P   T W KDG   +P
Sbjct:  4434 YGSVSCTATLTVTEAYPPTFFSRPKSVTTFVGKAAKFLCTVTGTPVIETIWQKDGMALSP 4493

Query:   109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVL 168
             +    I + ++   LE+S +T+ D G+Y+ K  N +G+    A L+I+D      +P  +
Sbjct:  4494 SPTCKISDVDNKHILELSNLTVHDKGVYSCKASNKFGADTCQAELDIID------KPHFI 4547

Query:   169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIA 228
               LE ++      +  E QV         I+W +N + +    D K  +  + K    IA
Sbjct:  4548 KELEPVQSAINKKIHLEGQVD--EDRKVTITWSKNGQKLPPGKDYK--IYFEDK----IA 4599

Query:   229 RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              L+IP    +D G + C  +NE G   TSA + +
Sbjct:  4600 SLEIPLAKLKDSGTYVCTASNEAGSSSTSATVTI 4633

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 5.7e-22, Sum P(2) = 5.7e-22
 Identities = 62/214 (28%), Positives = 99/214 (46%)

Query:    51 YSLNSAIRTRRLTSS--PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
             Y   S   T  +T +  P F + P +    +G   +F C+VTG P   T W KDG   +P
Sbjct:  4461 YGSVSCTATLTVTEAYPPTFLSRPKSLTTFVGKAAKFICTVTGTPVIETIWQKDGAALSP 4520

Query:   109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVL 168
             +    I + E+   LE+S +T++D G+Y+ K  N +G+    A L I+D      +P  +
Sbjct:  4521 SPNWRISDAENKHILELSNLTIQDRGVYSCKASNKFGADICQAELIIID------KPHFI 4574

Query:   169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIA 228
               LE ++      V  ECQV         ++W ++ + +    D K  +  + K    IA
Sbjct:  4575 KELEPVQSAINKKVHLECQVD--EDRKVTVTWSKDGQKLPPGKDYK--ICFEDK----IA 4626

Query:   229 RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              L+IP    +D G + C  +NE G    SA + V
Sbjct:  4627 TLEIPLAKLKDSGTYVCTASNEAGSSSCSATVTV 4660

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0031430 "M band" evidence=IEA;IDA

GO:0043056 "forward locomotion" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IEP

GO:0051015 "actin filament binding" evidence=IDA

GO:0042805 "actinin binding" evidence=IDA;IPI

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0035995 "detection of muscle stretch" evidence=TAS

GO:0031433 "telethonin binding" evidence=ISS;IPI

GO:0003300 "cardiac muscle hypertrophy" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|E2RLJ0 OBSCN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 236 (88.1 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
 Identities = 61/203 (30%), Positives = 92/203 (45%)

Query:    63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
             + +PRF   P   +  +G      C + G P P  SW KD  P    AR  + +  DL  
Sbjct:     6 SGAPRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSWEKDQLPVEEGARFRLAQDGDLYR 65

Query:   123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR--PKVLNGLENLRCCDGD 180
             L I ++ L D+G Y  +  N  G   A   L++ D  A  +   P  L    ++R  +G 
Sbjct:    66 LTILDLALGDSGQYVCRARNAIGEAFAAVGLQV-DAEAACAEQAPHFLLRPTSIRVREGA 124

Query:   181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
               TF C+V+  PP    +SW ++ R  +L +  +P V+V++      + L+I    P D 
Sbjct:   125 EATFRCRVRGSPPMA--VSWAKDGR--RLGAPDEPRVRVEALGEA--SALRIRDARPRDG 178

Query:   241 GEFTCRVANELGEVVTSACLIVD 263
             G +T R  N LG     A L VD
Sbjct:   179 GTYTVRAENPLGAASADAALTVD 201

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|J9JHM0 OBSCN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 236 (88.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
 Identities = 61/203 (30%), Positives = 92/203 (45%)

Query:    63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
             + +PRF   P   +  +G      C + G P P  SW KD  P    AR  + +  DL  
Sbjct:     6 SGAPRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSWEKDQLPVEEGARFRLAQDGDLYR 65

Query:   123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR--PKVLNGLENLRCCDGD 180
             L I ++ L D+G Y  +  N  G   A   L++ D  A  +   P  L    ++R  +G 
Sbjct:    66 LTILDLALGDSGQYVCRARNAIGEAFAAVGLQV-DAEAACAEQAPHFLLRPTSIRVREGA 124

Query:   181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
               TF C+V+  PP    +SW ++ R  +L +  +P V+V++      + L+I    P D 
Sbjct:   125 EATFRCRVRGSPPMA--VSWAKDGR--RLGAPDEPRVRVEALGEA--SALRIRDARPRDG 178

Query:   241 GEFTCRVANELGEVVTSACLIVD 263
             G +T R  N LG     A L VD
Sbjct:   179 GTYTVRAENPLGAASADAALTVD 201

GO:0005524 "ATP binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)]

 Score = 243 (90.6 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
 Identities = 80/244 (32%), Positives = 116/244 (47%)

Query:    78 DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-IREKEDLRFLEISEVTLEDAGLY 136
             + G   RF   VTG P P  SW K+ +  +   +   +RE  +   L I EV  EDA  Y
Sbjct:  3025 EAGKPARFSVEVTGIPQPQVSWYKNSQALSSGFKCKFLREGNEHTLLLI-EVFPEDAAQY 3083

Query:   137 TIKVENNYGSVEATARLEIMDPRAI-------ISRPKVLNGLENLRCCDGDSVTFECQVQ 189
               + +N+YG   ++A L +  P  +       +S P VL  ++N    +G S  F+C+V 
Sbjct:  3084 NCEAKNDYGVATSSASLNVEVPEVVSPDTGAPLSPPVVLTPIQNTSANEGQSARFQCRVS 3143

Query:   190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
                  D  I+W+  ++ IK  SD+    Q D  EN    +L+I  VYPEDEGE+TC   N
Sbjct:  3144 ---GEDLTITWYCKDKEIK-QSDIFRVSQFD--EN---CQLEITRVYPEDEGEYTCVARN 3194

Query:   250 ELGEVVTSACLIVD-VVKGKDLTSDGRLNIITVGGTSVLTIE-DITGDDSGKYQVHVSN- 306
               G V  SA L VD   +  D +S       +   TS+ TI+ D  G     +Q  +S+ 
Sbjct:  3195 SAGMVSCSALLKVDGETEVMDYSSKFPPQATSSPLTSIKTIQKDAIGQKPSFFQPIMSSV 3254

Query:   307 -QHG 309
               HG
Sbjct:  3255 VAHG 3258

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 8.7e-20, P = 8.7e-20
 Identities = 75/241 (31%), Positives = 113/241 (46%)

Query:    62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
             L   P F    H+     G+ +   C V G P P  SWSK+GK  + +  + +R K  + 
Sbjct:  8628 LMCKPEFTKPLHDLTIHDGEQLILTCYVKGDPEPQISWSKNGKSLSSSDILDLRYKNGIA 8687

Query:   122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEI------MDPRAIIS---RPKVLNGLE 172
              L I+EV  ED G+ T    N+ G+VE   +L I      ++ R + +    PK+++ LE
Sbjct:  8688 TLTINEVFPEDEGVITCTATNSVGAVETKCKLTIQPLDKNINKRKVNAGDNAPKIVSHLE 8747

Query:   173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKI 232
             +    DGD+V   C++  +     D+ W  NN+ IK   D     Q  ++ N  I RL+I
Sbjct:  8748 SRFVRDGDAVNLACRI--IGAQHFDVVWLHNNKEIKPSKDF----QYTNEAN--IYRLQI 8799

Query:   233 PHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDI 292
               ++PED G +TC   N++GE   S C I   V G +      +   T    SVL  E  
Sbjct:  8800 AEIFPEDGGTYTCEAFNDIGESF-STCTINVTVPGDETKQPSFVKFPT--SVSVLEGEGT 8856

Query:   293 T 293
             T
Sbjct:  8857 T 8857

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

FB|FBgn0010473 tutl "turtle" [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 62/200 (31%), Positives = 94/200 (47%)

Query:    66 PRFYAVPHNKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
             PRF   P + I  +LGD++   C   G P P   W KD  P  P+  V I    D   L 
Sbjct:   253 PRFSVTPEDIIYVNLGDSIILNCQADGTPTPEILWYKDANPVDPSPTVGIFN--DGTELR 310

Query:   125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
             IS +  ED G YT    N  G V  TAR+ I+   A+I  P       N    +G+ V F
Sbjct:   311 ISTIRHEDIGEYTCIARNGEGQVSHTARV-IIAGGAVIMVPPT-----NQTKLEGEKVIF 364

Query:   185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
              C+ + +P N   + W+R    ++  + ++  V +    +L+I  +K     P+D G++ 
Sbjct:   365 SCEAKAMPGNV-TVRWYREGSPVREVAALETRVTIRKDGSLIINPIK-----PDDSGQYL 418

Query:   245 CRVANELGEVVT-SACLIVD 263
             C V N +G+  + SA L V+
Sbjct:   419 CEVTNGIGDPQSASAYLSVE 438

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0007629 "flight behavior" evidence=IMP

GO:0030537 "larval behavior" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007414 "axonal defasciculation" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

WB|WBGene00006820 unc-89 [Caenorhabditis elegans (taxid:6239)]

 Score = 231 (86.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 69/240 (28%), Positives = 113/240 (47%)

Query:    57 IRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE 116
             ++  +  + P F     +K C  GD + F+C V G P P   W  D +P  P+    ++ 
Sbjct:   639 LKVEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWPEPELVWLVDDQPLRPSHDFRLQY 698

Query:   117 KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM-DPRAIISRPKVLNGLENLR 175
                   LEI +   +D G+YT+K++N +GS+E+ A L +  DP      P+    +E + 
Sbjct:   699 DGQTAKLEIRDAQPDDTGVYTVKIQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVE 758

Query:   176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV 235
             C +G+ V F+  V    PN  +I WF N + +  +S+   +V+  S++ + I  L I  V
Sbjct:   759 CDEGEEVRFK-SVITGDPNP-EIIWFINGKPLS-ESE---KVKFISEDGICI--LTIKDV 810

Query:   236 YPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIE-DITG 294
                 +G  TC+ +N LG       L V V      T +  L   TV   S +  E D++G
Sbjct:   811 TRHFDGMVTCQGSNRLGSASCDGRLKVRVPPAPP-TFNKPLEDKTVQEKSTVVFEVDVSG 869

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0017048 "Rho GTPase binding" evidence=IPI

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

GO:0031430 "M band" evidence=IDA

GO:0019902 "phosphatase binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	325
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	5e-26
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-16
smart00409	85	smart00409, IG, Immunoglobulin	1e-16
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	6e-15
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	1e-13
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-12
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-12
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	3e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-11
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	5e-11
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	7e-11
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	3e-10
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	5e-10
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-09
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-09
smart00410	85	smart00410, IG_like, Immunoglobulin like	9e-09
smart00409	85	smart00409, IG, Immunoglobulin	9e-09
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-08
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	1e-08
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-08
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	3e-08
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	4e-08
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	5e-08
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	9e-08
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	4e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-07
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	9e-07
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-06
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	2e-06
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	2e-06
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	2e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-06
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	6e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-05
smart00409	85	smart00409, IG, Immunoglobulin	1e-05
PHA02785	326	PHA02785, PHA02785, IL-beta-binding protein; Provi	1e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	2e-05
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	2e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	4e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	7e-05
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	8e-05
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	1e-04
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	1e-04
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	1e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	1e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-04
cd05859	101	cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (I	2e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	4e-04
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	6e-04
cd07702	72	cd07702, Ig2_VEGFR-1, Second immunoglobulin (Ig)-l	7e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.001
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.001
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	0.001
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	0.002
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.002
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.002
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	0.002
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	0.002
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.002
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	0.003
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.003
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	0.003
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.003
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.003
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.004
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	0.004
cd05866	92	cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-lik	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 98.9 bits (247), Expect = 5e-26
 Identities = 33/90 (36%), Positives = 46/90 (51%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P+F   P +     G++ RF C+VTG P P  SW KDG+P   + R  +  +     L I
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           S V  +D G YT    N+ G  EA+A L +
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 73.7 bits (181), Expect = 1e-16
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG-KPATPNARVTIREKEDLRFLEISEVTL 130
           P +     G++V   C  +G P P  +W K G K    + R ++        L IS VT 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
           ED+G YT    N+ GS  +   L +
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 73.7 bits (181), Expect = 1e-16
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG-KPATPNARVTIREKEDLRFLEISEVTL 130
           P +     G++V   C  +G P P  +W K G K    + R ++        L IS VT 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
           ED+G YT    N+ GS  +   L +
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 68.8 bits (169), Expect = 6e-15
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           PK     +++   +G+S  F C V   P     +SWF++ + ++         +V  +  
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPT--VSWFKDGQPLRSSD----RFKVTYEGG 54

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                L I +V P+DEG++TC   N  GE   SA L V
Sbjct: 55  --TYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 67  RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEI 125
           R +AVP       G TVR +C  +G P P  +W KDGKP     R+   +    ++ L +
Sbjct: 2   RLHAVP------AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLIL 55

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
             V   D+G YT  VEN YGS+  T ++++
Sbjct: 56  ESVVPSDSGKYTCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 83  VRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE 141
           V FQC V G P P   W K DG+   P  R  I + + L+   I  VT  D G YT + E
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGE--LPKGRAEILDDKSLK---IRNVTAGDEGSYTCEAE 55

Query: 142 NNYGSVEATARL 153
           N  G +EA+A L
Sbjct: 56  NMVGKIEASASL 67

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 25/72 (34%), Positives = 37/72 (51%)

Query: 82  TVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE 141
           +VR +  ++G+P P  +WSKDGKP   + RV I        L I      D+G YT+ ++
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60

Query: 142 NNYGSVEATARL 153
           N  G   AT  +
Sbjct: 61  NPAGEKSATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 71  VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
           V  +   D+G ++R++C  +G P P   W K+G+P     R+ + E  DLR    ++++L
Sbjct: 5   VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRI---TKLSL 60

Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
            D+G+Y    EN +G++ A+A L +
Sbjct: 61  SDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           G +V   C   G P P  +W KDGKP   + R           L I  V+LED+GLYT  
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGS----TLTIKSVSLEDSGLYTCV 57

Query: 140 VENNYG 145
            EN+ G
Sbjct: 58  AENSAG 63

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 58.3 bits (140), Expect = 3e-11
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 83  VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----LEISEVTLEDAGLYTI 138
           V   C  +G P P  +W K+GKP   +    +R           L IS VTLED+G YT 
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 139 KVENNYGSVEATAR 152
              N+ G+V A+  
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 57.9 bits (140), Expect = 5e-11
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 67  RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEI 125
           + +AVP        +TV+F+C   G P P   W K+GK      R+   + +     L +
Sbjct: 2   KLHAVP------AANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 55

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
             V   D G YT  VEN YGS+  T  L++
Sbjct: 56  ESVVPSDKGNYTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 57.8 bits (139), Expect = 7e-11
 Identities = 28/70 (40%), Positives = 40/70 (57%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           G++ RF C V G+PAP  +W ++G+    + R  I   E     EIS+V + D G YT+ 
Sbjct: 18  GESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVV 77

Query: 140 VENNYGSVEA 149
           VEN+ G  EA
Sbjct: 78  VENSEGKQEA 87

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 56.1 bits (135), Expect = 3e-10
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDG--------KPATPNARVTIREKEDLRFLEISEVTLE 131
           G TV FQC  TG P P   W K+G        +P   ++R ++ +  D   L I+ V   
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGD---LTITNVQRS 57

Query: 132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
           D G Y  +  N  GS+   A LE+ D   I  RP
Sbjct: 58  DVGYYICQTLNVAGSILTKAYLEVTD--VIADRP 89

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 54.9 bits (132), Expect = 5e-10
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 84  RFQCSVTGQPAPWTSWSKDGK---PATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV 140
           R +C+ TG P P  +W KDG    PA    R+ +  ++D+ F  I +V +ED G+Y+   
Sbjct: 2   RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFF--IVDVKIEDTGVYSCTA 59

Query: 141 ENNYGSVEATARLEIM 156
           +N  GS+ A A L ++
Sbjct: 60  QNTAGSISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 266 KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
            G+ L S  R  +   GGT  LTI ++  DD GKY    +N  G     A + V
Sbjct: 37  DGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
           VT  C     PP    I+W +N +   L S +   V+     +   + L I +V  ED G
Sbjct: 1   VTLTCLASGPPPPT--ITWLKNGK--PLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSG 56

Query: 242 EFTCRVANELGEVVTSA 258
            +TC  +N  G V  S 
Sbjct: 57  TYTCVASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G+SVT  C+    PP   +++W++      L         V    +   + L I +V PE
Sbjct: 9   GESVTLSCEASGSPP--PEVTWYKQG-GKLLAE--SGRFSVSRSGS--TSTLTISNVTPE 61

Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
           D G +TC   N  G   +   L V
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G+SVT  C+    PP   +++W++      L         V    +   + L I +V PE
Sbjct: 9   GESVTLSCEASGSPP--PEVTWYKQG-GKLLAE--SGRFSVSRSGS--TSTLTISNVTPE 61

Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
           D G +TC   N  G   +   L V
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           G  V  +C     P P  SWSK  +  T ++R+ I        LEI  VT  D G YT  
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCF 57

Query: 140 VENNYGSVEATARLEI 155
            EN +G   +T  L +
Sbjct: 58  AENFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYT 137
           +G +VR +C  +G P P  +W KD KP TP     I E    ++ L +  +  ED+G YT
Sbjct: 8   VGSSVRLKCVASGNPRPDITWLKDNKPLTPT---EIGESRKKKWTLSLKNLKPEDSGKYT 64

Query: 138 IKVENNYGSVEATARLEI 155
             V N  G + AT ++++
Sbjct: 65  CHVSNRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 83  VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142
           + F+C VTG+P P   W K+G    P+    I ++ +L+ L + +    D G Y    EN
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVK---SDEGFYQCIAEN 58

Query: 143 NYGSVEATARLEI 155
           + G+V+A A+L I
Sbjct: 59  DVGNVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGLYTI 138
           G T+   C+V G P P  SW K+ +    +    ++ E+     L I  V+ ED+G Y I
Sbjct: 16  GKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGI 75

Query: 139 KVENNYGS 146
            V+N YG 
Sbjct: 76  VVKNKYGG 83

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 83  VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF--LEISEVTLEDAGLYTIKV 140
           VR +C V+G P P   W K+ +  T N       +++  +  L I   T EDAG YT+  
Sbjct: 1   VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60

Query: 141 ENNYGSVEATARLEI 155
           +N  G V  TARL++
Sbjct: 61  KNEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGLYTI 138
           G T+   C+V G P P   W K+ +    +   +++ E+     L I  VT ED+G Y+I
Sbjct: 16  GKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSI 75

Query: 139 KVENNYG 145
            V+N YG
Sbjct: 76  NVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 48.7 bits (116), Expect = 9e-08
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           G+ +R    ++G+PAP  +WS+  K  T    RV +   +DL    I     ED G+YTI
Sbjct: 10  GNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTI 69

Query: 139 KVENNYGSVEATARLEI 155
            V N  G   A+  +++
Sbjct: 70  TVTNPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           G TV F C   G P P  +W+K G   + + R  +     LR   IS V L D G Y  +
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLR---ISRVALHDQGQYECQ 58

Query: 140 VENNYGSVEATARLEI 155
             N  GS    A+L +
Sbjct: 59  AVNIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G SVT  C  +  P  +  I+W ++         +    +  +  +     L I  V  E
Sbjct: 2   GQSVTLTCPAEGNPVPN--ITWLKDG------KPLPESNRFVASGS----TLTIKSVSLE 49

Query: 239 DEGEFTCRVANELG 252
           D G +TC   N  G
Sbjct: 50  DSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 46.1 bits (109), Expect = 9e-07
 Identities = 28/92 (30%), Positives = 41/92 (44%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P+    P +     G++V   C VTG      +W K  K       + I   E+   L I
Sbjct: 1   PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTI 60

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
           +E   E  G YT++VEN  GS +A   L ++D
Sbjct: 61  TEGQQEHCGCYTLEVENKLGSRQAQVNLTVVD 92

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           GK L   GR+ I T   ++ L I++    DSGKY + + N  G  S   +V V
Sbjct: 22  GKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           G  V  +C     P P  SWSK  +    N+R++I +   L   EI  +T  D G YT  
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSL---EILNITKLDEGSYTCF 57

Query: 140 VENNYGSVEATARLEI 155
            ENN G   +T  L +
Sbjct: 58  AENNRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 83  VRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRF-LEISEVTLEDAGLYTIKV 140
           VR +C V+  P P   W K+ +  T N  R+++ +    R  L I     EDAG YT+  
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 141 ENNYGSVEATARLEI 155
            N  G V   ARL++
Sbjct: 61  VNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSK--DGKP---ATPNARVTIREKEDLRFLEISEVTLEDAG 134
           G+T  F C VTG+P P  +W K   GK      PN         ++  L I     +DAG
Sbjct: 1   GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60

Query: 135 LYTIKVENNYGSVEA 149
           LYT    N+ G + A
Sbjct: 61  LYTCTARNSGGLLRA 75

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYT 137
           G +V   CSV+G P    +W K+GK    +  V   E       L IS VT ED+G YT
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 86  QCSVTG-QPAPWTSWSKDGKPATPNARV---TIREKEDLRFLEISEVTLEDAGLYTIKVE 141
           +C  T   P+    W KDGK      +     IR K+    L+I++  L D+G YT  VE
Sbjct: 4   KCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVE 63

Query: 142 NNYGSVEATARL 153
           N  G+   TA +
Sbjct: 64  NILGNDTVTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 266 KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
            GK L   GR ++   G TS LTI ++T +DSG Y    +N  GS S   ++ V
Sbjct: 32  GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 266 KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
            GK L   GR ++   G TS LTI ++T +DSG Y    +N  GS S   ++ V
Sbjct: 32  GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|165149 PHA02785, PHA02785, IL-beta-binding protein; Provisional

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 99  WSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS----VEATARLE 154
           WS  G     N R+  R       + I +V   DAG YT  ++  YG     V    +LE
Sbjct: 160 WS--GHRRLRNKRLKQRT---PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLE 214

Query: 155 IMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSD- 212
           + D R I   P  +   E +    G ++T  C+V + PP  D D+ W  N    + D + 
Sbjct: 215 VRD-RII---PPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDED 270

Query: 213 ------MKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
                 +  ++    K  ++ +RL I  V  ED   FTC
Sbjct: 271 GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTC 309

Length = 326

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT 137
            G  V  +C   G P P   W K DG      +   I     +  L+I  +  ED G Y 
Sbjct: 15  KGQNVTLECFALGNPVPQIKWRKVDGSMP---SSAEISMSGAV--LKIPNIQFEDEGTYE 69

Query: 138 IKVENNYGSVEATARL 153
            + EN  G      R+
Sbjct: 70  CEAENIKGKDTHQGRI 85

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 74  NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDA 133
           N   +LG +V   C   G P P  +W+KDG+P   +        ED   + I +V   D 
Sbjct: 12  NATANLGQSVTLACDADGFPEPTMTWTKDGEP-IESGEEKYSFNEDGSEMTILDVDKLDE 70

Query: 134 GLYTIKVENNYGSVEATARLEI 155
             YT   EN  G  EA   L++
Sbjct: 71  AEYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G +V  +C     P     I+W ++ +  K +  +    +V  K+      L +  V P 
Sbjct: 9   GSTVRLKCPASGNPRPT--ITWLKDGKPFKKEHRIGG-YKVRKKK----WTLILESVVPS 61

Query: 239 DEGEFTCRVANELGEV 254
           D G++TC V N+ G +
Sbjct: 62  DSGKYTCIVENKYGSI 77

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV-IARLKIPHVYP 237
           G SVT  C V   P  D  ++WF+          ++    V + EN V    L I +V P
Sbjct: 1   GSSVTLTCSVSGPPQVD--VTWFKE------GKGLEESTTVGTDENRVSSITLTISNVTP 52

Query: 238 EDEGEFTCRV 247
           ED G +TC V
Sbjct: 53  EDSGTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 18/78 (23%), Positives = 29/78 (37%)

Query: 78  DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT 137
             G T   +C+  G P P   W   G         T+    D+  L++S +T E     T
Sbjct: 13  YEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVT 72

Query: 138 IKVENNYGSVEATARLEI 155
              EN  G    + ++ +
Sbjct: 73  CTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 83  VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142
           VR    V   P P   W K+GK  +   R     K+    L I +VT EDAG YT+ + N
Sbjct: 1   VRLPVKVKAYPPPEIQWYKNGKLISEKNR----TKKSGHSLTIKDVTEEDAGNYTVVLTN 56

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 13/90 (14%)

Query: 80  GDTVRFQCSVTGQPAPWTSW--------SKDGKPATPNARVTIR-----EKEDLRFLEIS 126
           G TV F C V     P   W        SK G    P   V          +++  L + 
Sbjct: 1   GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLR 60

Query: 127 EVTLEDAGLYTIKVENNYGSVEATARLEIM 156
            VT EDAG YT    N+ G    +A L ++
Sbjct: 61  NVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKP---ATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
           G+T R  C V G P P  +WS +G P     P+ R  +        L +++V   D  +Y
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGA----LILTDVQPSDTAVY 56

Query: 137 TIKVENNYGSVEATARLEIM 156
             +  N +G++ A A + ++
Sbjct: 57  QCEARNRHGNLLANAHVHVV 76

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKP---ATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
           G+T R  C   G P P  +W  +G P     P+ R  +    D   L +S V   D  +Y
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRV----DGGTLILSNVQPNDTAVY 56

Query: 137 TIKVENNYGSVEATARL 153
                N +G + A A +
Sbjct: 57  QCNASNVHGYLLANAFV 73

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 83  VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142
           V+  CS  G P P  +W+KDG   T + +  I  +    +L I +V + D G Y     N
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARN 57

Query: 143 NYGSVEATARL 153
             G    +  L
Sbjct: 58  TIGYASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 79  LGDTVRFQCSV-TGQPAPWTSWSKDGKP-ATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
           +G+    +CS   G P P  SW KDG+P    N RV I +  +L    I+E    D G Y
Sbjct: 10  VGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLL---IAEARKSDEGTY 66

Query: 137 TIKVENNYGSVE-ATARLEI 155
                N  G  E A ARL +
Sbjct: 67  KCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           G+ V   CS  G P P  +W KDG P        +   ++  F     V+ ED+G YT  
Sbjct: 14  GEDVTLTCSAPGNPPPNYTWYKDGVP--------LSSSQNGFF--TPNVSAEDSGTYTCV 63

Query: 140 VENNYGS 146
             N  G 
Sbjct: 64  ASNGGGG 70

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 78  DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE---DLRFLEISEVTL---- 130
           +L +   F   V   P P   W KD +    N       +    + R+  +S++ L    
Sbjct: 16  NLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRY--VSKLKLIRAK 73

Query: 131 -EDAGLYTIKVENNYGSVEATARLEI 155
            ED+GLYT   +N       T  L+I
Sbjct: 74  EEDSGLYTALAQNEDAVKSYTFALQI 99

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. Length = 101

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G SV  +C     P    DI+W ++N+ +        E+    K+      L + ++ PE
Sbjct: 9   GSSVRLKCVASGNP--RPDITWLKDNKPL-----TPTEIGESRKKKWT---LSLKNLKPE 58

Query: 239 DEGEFTCRVANELGEVVTSACLIVDV 264
           D G++TC V+N  GE+  +A   VDV
Sbjct: 59  DSGKYTCHVSNRAGEI--NATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 80  GDTVRFQC-SVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           G  V F C + +  PA    W++ G      A       +    L I  V L DAG Y  
Sbjct: 16  GADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM------DFNGILTIRNVQLSDAGTYVC 69

Query: 139 KVENNYGSVEATARL 153
              N   + EATA L
Sbjct: 70  TGSNMLDTDEATATL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143326 cd07702, Ig2_VEGFR-1, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 93  PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           PAP   W KDG PA        R   D   L I +VT EDAG+YTI
Sbjct: 11  PAPEVIWLKDGLPAAEK---CSRYHVDGYSLVIKDVTEEDAGIYTI 53

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 72

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            G  V  +C   G P P   W K  +P    A +++        L+I  +  ED G Y  
Sbjct: 15  KGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGA----VLKIFNIQPEDEGTYEC 70

Query: 139 KVENNYGSVEATARLEI 155
           + EN  G  +  AR+ +
Sbjct: 71  EAENIKGKDKHQARVYV 87

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 24/71 (33%), Positives = 32/71 (45%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           G+TV F C  TG P P  +W  +      +ARV+I  +     L I +V   D G YT +
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 140 VENNYGSVEAT 150
             N  G V   
Sbjct: 61  AINTRGMVFGI 71

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYT 137
           +G++  F C V G+P   + +S +G+      ++++ + +D+R  L I    +EDAG+Y 
Sbjct: 14  VGESKFFLCQVIGEPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYK 73

Query: 138 IKVENNYGSV-EATARLEI 155
               +  G+  EAT  L+I
Sbjct: 74  CVATDAKGTESEATVNLKI 92

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
           V F+C+V   P     + W +       D ++ P+ + +  ++     LKI +V   DEG
Sbjct: 1   VEFQCEVGGDPVPT--VLWRKE------DGEL-PKGRAEILDD---KSLKIRNVTAGDEG 48

Query: 242 EFTCRVANELGEVVTSACLIV 262
            +TC   N +G++  SA L V
Sbjct: 49  SYTCEAENMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 263 DVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYAS 316
                  + +  R +  T  G+S LTI ++T +DSG Y    SN  G+ S   +
Sbjct: 21  GKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 15/87 (17%)

Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR--LKIPHV 235
           +G +V F C+ Q  P     I+W +    + +D           + +LV++   L+I  V
Sbjct: 1   EGQTVDFLCEAQGYPQPV--IAWTKGGSQLSVD-----------RRHLVLSSGTLRISRV 47

Query: 236 YPEDEGEFTCRVANELGEVVTSACLIV 262
              D+G++ C+  N +G   T A L V
Sbjct: 48  ALHDQGQYECQAVNIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRL--IKLDSDMKPEVQV--------DSKENLVIA 228
           G +V F C+V       H I W ++      K   D  P V V          KE   + 
Sbjct: 1   GSTVEFVCKV-YSDAQPH-IQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKE---ME 55

Query: 229 RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            L + +V  ED GE+TC   N +G    SA L V
Sbjct: 56  VLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 179 GDSVTFECQVQVVPPNDH---DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV 235
           G+    EC     PP  H    +SW ++ + + LD+     V++    NL+IA  +    
Sbjct: 11  GEMAVLECS----PPRGHPEPTVSWRKDGQPLNLDN---ERVRIVDDGNLLIAEAR---- 59

Query: 236 YPEDEGEFTCRVANELGEVVTSA 258
              DEG + C   N +GE  ++A
Sbjct: 60  -KSDEGTYKCVATNMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 80  GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           G  V   CS  G P P T SW ++G      +  +         L +S VT ED+G YT 
Sbjct: 15  GGGVTLTCSAEGGPPPPTISWYRNGS----ISGGSGGLGSSGSTLTLSSVTSEDSGTYTC 70

Query: 139 KVEN 142
              N
Sbjct: 71  VASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 266 KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
            GK L    R     V   S LTI+ ++ +DSG Y     N  G
Sbjct: 24  DGKPLPESNRF----VASGSTLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 86  QCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL-RFLEISEVTLEDAGLYTIKVENNY 144
           +C   G P P  SW K G    P  R      E+  + L+I  V+ ED G Y     N+ 
Sbjct: 4   ECIAEGLPTPEISWIKIGGE-LPADRTK---FENFNKTLKIDNVSEEDDGEYRCTASNSL 59

Query: 145 GSVEAT 150
           GS   T
Sbjct: 60  GSARHT 65

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 83  VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142
           V+    V   P P   W KDGK  +         K     L+I +VT   AG YT+ + N
Sbjct: 1   VKLPVKVAAYPPPEFQWYKDGKLISG--------KHSQHSLQIKDVTEASAGTYTLVLWN 52

Query: 143 NYGSVEATARLEIM 156
           +   +E    LE++
Sbjct: 53  SAAGLEKRISLELI 66

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-----ATPNARVTIREKEDL 120
           PR    P + I   GD     C   G+P P   W K+G+P       P +   +     L
Sbjct: 2   PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSL 61

Query: 121 RFLEI--SEVTLEDAGLYTIKVENNYGSVEATAR 152
            FL +        D G+Y     N+ G  EA +R
Sbjct: 62  FFLRVVHGRKGRSDEGVYVCVAHNSLG--EAVSR 93

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 83  VRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRF-LEISEVTLEDAGLYTIKV 140
           V+ +C ++  P P   W ++ +    N  R+++ +    R  L I  V  +DAG YT+  
Sbjct: 1   VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60

Query: 141 ENNYGSVEATARLEI 155
            N  G     ARL++
Sbjct: 61  VNEAGVATCHARLDV 75

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           G  + LTI+ ++ +DSGKY + V N++G ++   +V+V
Sbjct: 55  GKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 80  GDTVRFQCSVTGQPAPWTSW-SKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           G     +C   G P P   W S DGK  + ++R  + +   L   +I   T++D G +T 
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTL---DILITTVKDTGSFTC 57

Query: 139 KVENNYGSVEATARLEI 155
              N  G  EATA +E+
Sbjct: 58  IASNAAG--EATATVEL 72

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143274 cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYT 137
           +G++  F C+  G+P     ++  G+    + RV + +KE +R  L I    +EDAG+Y 
Sbjct: 14  VGESKFFTCTAIGEPESIDWYNPQGEKIVSSQRVVV-QKEGVRSRLTIYNANIEDAGIYR 72

Query: 138 IKVENNYGSV-EATARLEI 155
            +  +  G   EAT  LEI
Sbjct: 73  CQATDAKGQTQEATVVLEI 91

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4194|consensus	873		99.96
KOG4221|consensus	1381		99.96
KOG4222|consensus	1281		99.95
KOG4194|consensus	873		99.94
PHA02785	326	IL-beta-binding protein; Provisional	99.94
PHA02785	326	IL-beta-binding protein; Provisional	99.93
KOG4222|consensus	1281		99.92
PHA02826	227	IL-1 receptor-like protein; Provisional	99.87
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.78
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.72
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.72
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.72
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.71
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.68
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.67
PHA02826	227	IL-1 receptor-like protein; Provisional	99.67
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.66
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.65
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.65
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.64
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.64
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.63
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.63
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.63
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.63
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.62
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.62
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.62
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.62
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.61
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.61
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.61
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.61
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.61
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.6
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.6
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.6
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.6
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.59
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.59
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.59
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.59
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.58
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.58
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.58
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.58
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.58
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.57
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.57
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.57
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.57
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.56
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.56
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.56
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.56
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.56
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.56
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.55
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.55
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.55
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.55
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.54
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.54
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.54
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.54
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.54
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.54
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.53
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.53
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.53
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.52
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.52
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.52
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.52
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.52
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.51
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.51
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.51
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.5
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.5
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.5
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.5
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.49
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.49
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.49
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.49
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.49
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.49
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.49
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.49
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.48
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.48
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.48
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.48
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.48
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.48
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.47
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.47
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.47
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.47
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.46
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.46
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.46
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.46
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.46
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.45
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.45
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.45
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.45
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.45
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.45
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.45
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.45
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.45
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.44
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.44
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.44
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.44
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.44
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.43
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.43
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.43
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.42
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.42
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.42
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.42
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.42
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.41
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.41
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.41
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.41
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.41
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.4
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.4
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.4
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.4
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.4
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.39
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.39
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.39
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.39
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.39
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.39
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.38
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.38
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.38
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.38
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.37
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.37
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.36
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.36
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.36
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.36
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.34
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.34
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.34
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.33
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.33
KOG3515|consensus	741		99.33
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.33
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.32
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.31
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.31
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.31
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.31
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.3
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.3
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.3
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.3
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.29
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.28
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.27
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.26
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.25
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.25
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.24
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.24
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.24
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.23
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.23
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.23
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.22
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.22
smart00409	86	IG Immunoglobulin.	99.22
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.22
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.21
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.18
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.17
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.15
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.14
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.14
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.13
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.13
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.12
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.11
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.1
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.1
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.09
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.07
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.06
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.04
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.03
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.03
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.03
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.02
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.01
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.01
PHA03376	221	BARF1; Provisional	99.0
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.98
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.97
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.97
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.96
smart00409	86	IG Immunoglobulin.	98.95
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.95
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.95
KOG3515|consensus	741		98.93
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.92
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.91
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.91
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.9
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.89
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.88
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.87
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.86
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.85
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.84
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.83
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.81
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.81
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.79
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.79
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.79
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.77
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.76
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.76
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.75
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.75
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.74
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.74
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.72
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.72
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.71
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.7
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.7
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.69
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.69
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.66
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.66
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.64
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.63
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.63
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.62
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.62
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.62
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.61
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.61
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.59
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.58
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.56
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.56
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.56
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.55
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.55
smart00407	75	IGc1 Immunoglobulin C-Type.	98.54
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.52
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.52
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.52
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.52
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.51
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.5
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.5
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.49
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.48
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.47
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.46
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.46
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.45
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.44
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.44
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.44
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.43
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.43
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.43
PHA03271	490	envelope glycoprotein C; Provisional	98.42
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.42
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.42
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.41
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.41
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.41
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.38
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.38
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.37
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.36
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.36
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.36
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.35
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.33
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.32
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.32
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.32
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.31
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.3
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.3
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.3
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.29
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.28
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.28
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.27
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.27
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.27
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.27
PHA03269	566	envelope glycoprotein C; Provisional	98.25
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.22
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	98.22
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	98.2
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.2
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.19
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.18
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.18
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.17
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.17
PHA03273	486	envelope glycoprotein C; Provisional	98.15
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.14
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.13
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.12
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.08
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.08
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.07
PHA03270	466	envelope glycoprotein C; Provisional	98.07
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.06
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.05
PHA03376	221	BARF1; Provisional	98.05
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.04
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.03
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	98.02
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.02
PHA03269	566	envelope glycoprotein C; Provisional	98.01
PHA03271	490	envelope glycoprotein C; Provisional	97.97
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.93
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.93
smart00406	81	IGv Immunoglobulin V-Type.	97.92
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.92
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.91
PHA03273	486	envelope glycoprotein C; Provisional	97.9
PHA03270	466	envelope glycoprotein C; Provisional	97.87
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.85
smart00407	75	IGc1 Immunoglobulin C-Type.	97.83
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.8
KOG1480|consensus	909		97.77
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.76
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.75
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.62
PHA02633	63	hypothetical protein; Provisional	97.6
smart00406	81	IGv Immunoglobulin V-Type.	97.6
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.59
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.58
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.52
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.51
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.51
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.45
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.44
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.43
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.42
PHA02633	63	hypothetical protein; Provisional	97.36
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.35
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.33
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.31
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.3
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.22
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.13
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.04
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.85
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.82
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.78
KOG0613|consensus	1205		96.74
PHA02982	251	hypothetical protein; Provisional	96.7
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.63
KOG1480|consensus	909		95.9
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.9
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.51
KOG4597|consensus	560		95.26
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	95.19
PHA03042	286	CD47-like protein; Provisional	95.17
KOG0613|consensus	1205		95.13
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.09
PHA02865	338	MHC-like TNF binding protein; Provisional	95.08
PHA02982	251	hypothetical protein; Provisional	94.88
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.73
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	94.6
KOG4597|consensus	560		94.22
PHA02865	338	MHC-like TNF binding protein; Provisional	93.81
PHA02914	500	Immunoglobulin-like domain protein; Provisional	93.79
PHA03042	286	CD47-like protein; Provisional	93.6
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	93.25
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	93.14
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.59
KOG1026|consensus	774		92.24
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	91.6
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	91.15
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	91.0
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	90.89
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	88.89
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	87.71
PHA03283	542	envelope glycoprotein E; Provisional	87.64
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	87.62
PHA03052	69	Hypothetical protein; Provisional	87.08
PHA03052	69	Hypothetical protein; Provisional	86.19
PHA03189	348	UL14 tegument protein; Provisional	85.76
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	81.72
PHA03283	542	envelope glycoprotein E; Provisional	80.37
KOG1026|consensus	774		80.35
PHA03189	348	UL14 tegument protein; Provisional	80.21

>KOG3513|consensus

Probab=100.00  E-value=4.1e-40  Score=294.01  Aligned_cols=293  Identities=25%  Similarity=0.417  Sum_probs=238.0

Q ss_pred             eeeecccCCC-CcccCCCCCCCCCCCCCcccCCCCCCCcccccccccccc-----cccCCCCeeEecCCceEecCCCeEE
Q psy1095          11 LSVKLTRPSG-LMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSSPRFYAVPHNKICDLGDTVR   84 (325)
Q Consensus        11 ~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v~   84 (325)
                      .++.|.+.++ .++...+..-..+.|.|.+++-+|+|.|.|.+.|..+..     ..+.++|.++..+.+..+..|+++.
T Consensus       271 P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~  350 (1051)
T KOG3513|consen  271 PQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVT  350 (1051)
T ss_pred             CcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeE
Confidence            4789999999 666666666677899999999999999999999887733     4666999999999999999999999


Q ss_pred             EEEEEEecCCCeeEEeeCCeeCCCCCc---EEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcc
Q psy1095          85 FQCSVTGQPAPWTSWSKDGKPATPNAR---VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI  161 (325)
Q Consensus        85 l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~  161 (325)
                      |.|.+.|.|.|.++|++|+.++....+   ..+...    +|.|.+++..|+|.|.|.+.|..|...+.+.|.|...   
T Consensus       351 ~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~---  423 (1051)
T KOG3513|consen  351 LECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS---  423 (1051)
T ss_pred             EEEEecCCCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc---
Confidence            999999999999999999999986665   555432    5999999999999999999999999999999999875   


Q ss_pred             cCCCeeeecCcC--eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         162 ISRPKVLNGLEN--LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       162 ~~~p~~~~~~~~--~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                        +|.|...+..  ..+..|..+.|.|.+.+.|.  +.+.|.+++..+..+.++...  .+|       +|.|.+++.+|
T Consensus       424 --~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~--p~~~W~k~~~~~~~~~r~~i~--edG-------tL~I~n~t~~D  490 (1051)
T KOG3513|consen  424 --APVFPLNPVERKVMAVVGGTVTIDCKPFASPK--PKVSWLKGGEKLLQSGRIRIL--EDG-------TLEISNVTRSD  490 (1051)
T ss_pred             --CCCCCCCccceEEEEEeCCeEEEeeccCCCCc--ceEEEEcCCcccccCceEEEC--CCC-------cEEecccCccc
Confidence              3444444433  36778999999999999998  899999998865555554433  454       99999999999


Q ss_pred             CeEEEEEEEeCCCcEEeEEEEEEEe--------------------------------------eCCeecCCC---CceEE
Q psy1095         240 EGEFTCRVANELGEVVTSACLIVDV--------------------------------------VKGKDLTSD---GRLNI  278 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~~~~~~~l~v~~--------------------------------------~~~~~~~~~---~~~~~  278 (325)
                      +|.|+|.|.|..|.......|.|..                                      .+|..+...   .++..
T Consensus       491 aG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~  570 (1051)
T KOG3513|consen  491 AGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEI  570 (1051)
T ss_pred             CcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEE
Confidence            9999999999999999888877732                                      222221111   11111


Q ss_pred             EEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         279 ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       279 ~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                      ....+...|+|.++...|+|.|.|+|...+.+.++.+.|.|+++|
T Consensus       571 ~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpP  615 (1051)
T KOG3513|consen  571 NDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPP  615 (1051)
T ss_pred             eCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCC
Confidence            111112469999999999999999999988899999999999887

>KOG3513|consensus

Probab=100.00  E-value=2e-38  Score=283.22  Aligned_cols=300  Identities=22%  Similarity=0.311  Sum_probs=229.1

Q ss_pred             chhcccceeeecccCCCCcccC----CCCCCCCCCCCCcccCCCCCCCccccccccccccc---------------ccCC
Q psy1095           4 PEEKENSLSVKLTRPSGLMSGH----STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTR---------------RLTS   64 (325)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~---------------~~~~   64 (325)
                      |..-.. |++.|.......-..    .........|-+.+|..+|.+.|.|.+.+....+.               ....
T Consensus       161 P~~~P~-l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~  239 (1051)
T KOG3513|consen  161 PAHFPP-LRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREY  239 (1051)
T ss_pred             CCCCCC-ccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccccccccc
Confidence            444444 677777666554222    12233446777999999999999999976332221               1114


Q ss_pred             CCeeEe-cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYA-VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      +|.+.. .|+......|+.|.|.|.+.|.|.|.+.|.|.+.... ..+....  +...+|.|.+++.+|+|.|.|.+.|.
T Consensus       240 ~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~-~~r~~~~--~~~~vL~I~nv~~~D~G~Y~C~AeN~  316 (1051)
T KOG3513|consen  240 APKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPP-PRRATYS--NYGKVLKIPNVQYEDAGEYECIAENS  316 (1051)
T ss_pred             CCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCC-Ccceeee--ccccEEEecccCcCCCeEEEEEEecc
Confidence            565543 3446678899999999999999999999999877422 2232222  34467999999999999999999999


Q ss_pred             CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCc
Q psy1095         144 YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE  223 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  223 (325)
                      .|.....+.+.|...      |..+..+.+..+..|+++.|.|.+.|.|.  +.++|++||.++....+........+  
T Consensus       317 ~G~~~~~~~v~v~a~------P~w~~~~~d~~~~~gs~v~~eC~a~g~P~--p~v~WlkNg~pl~~~~r~~~~~i~~g--  386 (1051)
T KOG3513|consen  317 RGSATHSGHVTVYAP------PYWLQKPQDTEADTGSNVTLECKASGKPN--PTVKWLKNGEPLEPAERDPRYKIDDG--  386 (1051)
T ss_pred             cccceeeEEEEEecC------chhhcccceeEecCCCCeEEEEEecCCCC--CceEEeeCCeecCccCCCcceEEeCC--
Confidence            998888999999876      66666777888899999999999999998  89999999999986655333333444  


Q ss_pred             ceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC------------------------------------
Q psy1095         224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG------------------------------------  267 (325)
Q Consensus       224 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~------------------------------------  267 (325)
                           .|+|.+++..|+|.|.|.|+|..|...+++.|.|....+                                    
T Consensus       387 -----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~  461 (1051)
T KOG3513|consen  387 -----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL  461 (1051)
T ss_pred             -----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence                 899999999999999999999999999999999843321                                    


Q ss_pred             ---eecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccCC
Q psy1095         268 ---KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII  325 (325)
Q Consensus       268 ---~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~i  325 (325)
                         ..+..++++.+ ..+  .+|.|.+++.+|+|.|+|.|+|.+|..+....|.|++++.|
T Consensus       462 k~~~~~~~~~r~~i-~ed--GtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri  519 (1051)
T KOG3513|consen  462 KGGEKLLQSGRIRI-LED--GTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRI  519 (1051)
T ss_pred             cCCcccccCceEEE-CCC--CcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceE
Confidence               11112222222 122  36999999999999999999999999999999999998875

>KOG4221|consensus

Probab=100.00  E-value=1.9e-31  Score=238.26  Aligned_cols=299  Identities=23%  Similarity=0.345  Sum_probs=231.4

Q ss_pred             ceeeecccCCCCcccCC---CCCCCCCCCCCcccCC-----CCCCCccccccccccc-------ccccCCCCeeEecCCc
Q psy1095          10 SLSVKLTRPSGLMSGHS---TPRSTPRSTPPRSISP-----LSSRTFTPYSLNSAIR-------TRRLTSSPRFYAVPHN   74 (325)
Q Consensus        10 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~v~~-----~d~G~Y~c~~~~~~~~-------~~~~~~~p~~~~~~~~   74 (325)
                      -.++.|++++..+.-..   .....+.+|-|.++-.     -|+|.|.|.+...+..       .+.+...+.|...+.+
T Consensus        70 ~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~  149 (1381)
T KOG4221|consen   70 SVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPES  149 (1381)
T ss_pred             CeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccc
Confidence            45788998888777662   3444567888998888     8999999998655222       2344477888889999


Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee-EEEEEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-VEATARL  153 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l  153 (325)
                      .++..|+++.|.|.+.+.|.|.+.|.++..++....++.+...+   .|.|.+++..|.|.|.|.+.+.... ....+.|
T Consensus       150 ~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~l  226 (1381)
T KOG4221|consen  150 TTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAEL  226 (1381)
T ss_pred             eeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEE
Confidence            99999999999999999888999999999988887777776665   4999999999999999999886543 2445677


Q ss_pred             EEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC
Q psy1095         154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       154 ~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      .|...+.......|...+....+..|+++.|.|.+.+.|.  +.|.|.+++..+..+. .+.....       .+.|.|.
T Consensus       227 tv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~--p~v~Wlrng~~i~~ds-~rivl~g-------~~slliS  296 (1381)
T KOG4221|consen  227 TVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPK--PSVKWLRNGEKISVDS-YRIVLVG-------GSSLLIS  296 (1381)
T ss_pred             EecCCcccccceeeecCCCccccccCCcEEEEEEecCCCC--CceEEeeCCeeeeecc-eEEEEec-------ccceEEe
Confidence            7775555555566777777888999999999999999999  8999999999988765 3333222       2589999


Q ss_pred             CCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCee------------------------------------cCCCCceE
Q psy1095         234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD------------------------------------LTSDGRLN  277 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~------------------------------------~~~~~~~~  277 (325)
                      +++..|+|.|+|+|.|......+.+.|.|...++-.                                    +.+.+.++
T Consensus       297 ~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~k  376 (1381)
T KOG4221|consen  297 NATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFK  376 (1381)
T ss_pred             ccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceE
Confidence            999999999999999977777777777775443211                                    11111111


Q ss_pred             EEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         278 IITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       278 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                      +. .+  ..|.|..+-..|+|.|.|.++|..|...+.+.|.|...|+
T Consensus       377 i~-~~--~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~  420 (1381)
T KOG4221|consen  377 IV-GG--GNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA  420 (1381)
T ss_pred             ec-CC--CCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc
Confidence            11 11  2288888999999999999999999999999887766554

>KOG4194|consensus

Probab=99.96  E-value=5e-28  Score=203.04  Aligned_cols=225  Identities=24%  Similarity=0.435  Sum_probs=184.7

Q ss_pred             CCCCCcccCCCCCCCcccccccccccc------cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCee-
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIRT------RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-  105 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~-  105 (325)
                      .-|++.||...|+|.|.|++.|..+..      ..+...|.|...|.++++..|+.+.|.|.++|.|.|++.|-|+|.. 
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd  653 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD  653 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence            345688999999999999998876643      4555899999999999999999999999999999999999998765 


Q ss_pred             CCCC--CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEE
Q psy1095         106 ATPN--ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT  183 (325)
Q Consensus       106 ~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~  183 (325)
                      .+..  .+..+..++  ..+.|.+++.+|+|.|+|.+.|.+|..++.+.|.|.+.      |.+.....+..|..|+.+.
T Consensus       654 FPAA~eRRl~Vmped--d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~------p~f~~PL~~~~V~~get~v  725 (873)
T KOG4194|consen  654 FPAARERRLHVMPED--DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLET------PSFSIPLEDQLVVVGETLV  725 (873)
T ss_pred             CchhhhheeeecCCC--CEEEEecccccccceeEEeeeccccceeeceEEEEecC------CcccccccceEEEecceEE
Confidence            4433  344444433  35899999999999999999999999999999999986      5556667788899999999


Q ss_pred             EEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       184 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |.|.+.+.|.. +.+.|+|+++++....+..+.  ..      .-.|.+.+...+|+|.|+|...+..+.......+.+.
T Consensus       726 lqC~a~~~~a~-pr~~W~k~d~pil~t~rh~f~--d~------dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~  796 (873)
T KOG4194|consen  726 LQCLAEGAPAD-PRLEWFKEDKPILITERHTFP--DG------DQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY  796 (873)
T ss_pred             EEEecCCCCCC-ccccccCCCCceEEeecccCC--CC------CeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence            99999987764 899999999988765543332  22      2478888889999999999999999988888888887


Q ss_pred             eeCCeecCCCC
Q psy1095         264 VVKGKDLTSDG  274 (325)
Q Consensus       264 ~~~~~~~~~~~  274 (325)
                      ..++-.+..++
T Consensus       797 ~~~~~~~Se~~  807 (873)
T KOG4194|consen  797 QKKKCRMSEDG  807 (873)
T ss_pred             ecCCcccccCC
Confidence            77666555444

>KOG4221|consensus

Probab=99.96  E-value=2.1e-28  Score=219.00  Aligned_cols=295  Identities=21%  Similarity=0.329  Sum_probs=212.6

Q ss_pred             ccceeeecccCCCCcccC-CCCCCCCCCCCCcccCCCCCCCccccccccccccc------ccC------CCCeeEecCCc
Q psy1095           8 ENSLSVKLTRPSGLMSGH-STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTR------RLT------SSPRFYAVPHN   74 (325)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~------~~~------~~p~~~~~~~~   74 (325)
                      +.+..+.|.+++..+..- .....-+..|.|.++++.|.|.|+|.+.++..+..      .+.      ..-.|...|.+
T Consensus       167 e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~  246 (1381)
T KOG4221|consen  167 EPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSN  246 (1381)
T ss_pred             ccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCc
Confidence            445578888887743333 33344456888999999999999999977655332      111      12245677888


Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC-cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL  153 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  153 (325)
                      ..+.+|+++.|.|.+.+.|.|.|.|.+++..+.-.. ++.+...   ..|.|.+++.+|+|.|+|++.|......+...|
T Consensus       247 ~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~---~slliS~a~~~dSg~YtC~Atn~~D~idasaev  323 (1381)
T KOG4221|consen  247 AVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGG---SSLLISNATDDDSGKYTCRATNTNDSIDASAEV  323 (1381)
T ss_pred             cccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecc---cceEEeccccccCceEEEEecCCCcccccceEE
Confidence            899999999999999999999999999999886543 3333222   359999999999999999999976677788888


Q ss_pred             EEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC
Q psy1095         154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       154 ~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      .|..+      |.|+..+......++.++.|.|.+.+.|.  +.+.|+|+|..+..+..++..  ..+       .|.|.
T Consensus       324 ~V~a~------P~~~~~p~~l~A~e~~die~ec~~~g~p~--p~v~w~kNgd~~ipsdy~ki~--~~~-------~lrIl  386 (1381)
T KOG4221|consen  324 TVLAP------PGFTKAPTTLVAHESMDIEFECPVSGKPI--PTVRWYKNGDRIIPSDYFKIV--GGG-------NLRIL  386 (1381)
T ss_pred             EEEcC------CCCCCCCcceeeeeccceeEeCCCCCCCc--ceEEEEecCcccCcccceEec--CCC-------CcEEE
Confidence            89876      55555556667778999999999999877  899999999887765554432  232       38888


Q ss_pred             CCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC-----------------------------eecCCCCce--------
Q psy1095         234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG-----------------------------KDLTSDGRL--------  276 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-----------------------------~~~~~~~~~--------  276 (325)
                      .+-..|.|.|.|.+.|..|.....+.|.+...+-                             .+....+..        
T Consensus       387 gi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~  466 (1381)
T KOG4221|consen  387 GIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYK  466 (1381)
T ss_pred             EEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEe
Confidence            8888999999999999999888766664311100                             000011100        


Q ss_pred             ---------EEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         277 ---------NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       277 ---------~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                               ......+ ..+.+.++...-...+.|.|.|..|....+..|+|.-+|
T Consensus       467 ~~~~~rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~p  521 (1381)
T KOG4221|consen  467 VEGDVRERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQP  521 (1381)
T ss_pred             cCCchhhhheeccCCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCC
Confidence                     1111122 455666666555555577788999999999999998766

>KOG4222|consensus

Probab=99.95  E-value=2.5e-27  Score=211.05  Aligned_cols=292  Identities=24%  Similarity=0.366  Sum_probs=219.0

Q ss_pred             eeecccCCCCcccC---CCCCCCCCCCCCcccCCCCCCCcccccccccccc------cccCCCCeeEecCCceEecCCCe
Q psy1095          12 SVKLTRPSGLMSGH---STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT------RRLTSSPRFYAVPHNKICDLGDT   82 (325)
Q Consensus        12 ~~~~~~~~~~~~~~---~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p~~~~~~~~~~v~~g~~   82 (325)
                      .++|-+++..+--.   ..-.-....|.|.|+..+|+|+|.|++.|..+..      +.+..+|.+...|....+.+|..
T Consensus       163 tvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~  242 (1281)
T KOG4222|consen  163 TVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAA  242 (1281)
T ss_pred             cceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccc
Confidence            56677777666511   1111234678899999999999999998866543      56668999999999999999999


Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCccc
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAII  162 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~  162 (325)
                      +.+.|.+.|.|.|.+.|.+++..+... ++.+..+  ..+|.|.+++..|.|.|.|.+.|..|..++...++|...    
T Consensus       243 ~~f~c~v~GdP~P~Vrwkk~~~~~P~~-ry~i~~d--~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap----  315 (1281)
T KOG4222|consen  243 AEFDCRVGGDPQPTVRWKKDDPSLPRS-RYSILDD--TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP----  315 (1281)
T ss_pred             cccccccCCCCCCceeeeccCCCCCcc-ceeeeec--cccccccccCCCcccceeeeccccccccccccceEEecC----
Confidence            999999999999999999987777654 4444433  346999999999999999999999999999999999876    


Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD------SDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                        |.|...+.+..+..|..++|.|.+.++|+  +.+.|.+.+......      .+.+.....       ...|+|.+++
T Consensus       316 --P~f~kkp~dq~v~lg~~vt~pc~~~gnP~--PavfW~keg~q~llf~~~p~~~~~r~svs~-------~g~L~it~v~  384 (1281)
T KOG4222|consen  316 --PSFGKKPRDQKVALGGTVTFPCETLGNPP--PAVFWLKEGSQDLLFSASPPSSNGRGSVSP-------TGTLTITNVR  384 (1281)
T ss_pred             --cccccccCccccccCceEEeeeecCCCCC--cceEEeccCcceecccCCCCCcCccceecC-------CCCccccccc
Confidence              67777777888889999999999999999  899999977543211      121222112       2389999999


Q ss_pred             CCCCeEEEEEEEeCCCcEEeEEEEEEEe-----eCCeecC---------CCCce--------------------------
Q psy1095         237 PEDEGEFTCRVANELGEVVTSACLIVDV-----VKGKDLT---------SDGRL--------------------------  276 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~-----~~~~~~~---------~~~~~--------------------------  276 (325)
                      ..|.|.|.|...+..+.......+.+..     .+...+.         .++..                          
T Consensus       385 ~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~  464 (1281)
T KOG4222|consen  385 QSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNP  464 (1281)
T ss_pred             ccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccC
Confidence            9999999999888777655544443321     1222221         00000                          


Q ss_pred             -EEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         277 -NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       277 -~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                       .........+|.|.+...-|.|.|+|.|.+..|+...++.|.|..
T Consensus       465 d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~  510 (1281)
T KOG4222|consen  465 DSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEK  510 (1281)
T ss_pred             CcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhh
Confidence             000111224799999999999999999999999999999999864

>KOG4194|consensus

Probab=99.94  E-value=1.1e-25  Score=189.14  Aligned_cols=245  Identities=23%  Similarity=0.393  Sum_probs=184.2

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe--cCCCeeEEeeCCeeCCCC-----CcEEEEe--------cCCeEEEEEccC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG--QPAPWTSWSKDGKPATPN-----ARVTIRE--------KEDLRFLEISEV  128 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~~~~~~~-----~~~~~~~--------~~~~~~l~i~~~  128 (325)
                      ..|.|...|+.+....|++++|+|.+.+  ..+..+.|.+++.-....     .++....        ..-...|.+.++
T Consensus       502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV  581 (873)
T KOG4194|consen  502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV  581 (873)
T ss_pred             CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence            4678888999988899999999999865  334578999987633211     1111111        011345899999


Q ss_pred             CCCCCeEEEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEE-
Q psy1095         129 TLEDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRL-  206 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~-  206 (325)
                      +..|+|.|+|.++|.+|.. ...+.++|...      |.|+..+.+.++..|+.+.|.|.++|.|.  |.+.|.|+|.. 
T Consensus       582 t~td~grYQCVvtN~FGStysqk~KltV~~~------PsFtktP~dltl~tg~mArl~CaAtG~P~--PeIawqkdggtd  653 (873)
T KOG4194|consen  582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA------PSFTKTPEDLTLRTGQMARLECAATGHPR--PEIAWQKDGGTD  653 (873)
T ss_pred             ecccCceEEEEEecccCcchhheeEEEeecc------CccccCcccceeecccceeeeeeccCCCC--cceeehhcCCCC
Confidence            9999999999999999865 45678888765      88899999999999999999999999998  89999998765 


Q ss_pred             eccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecC---------------
Q psy1095         207 IKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLT---------------  271 (325)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~---------------  271 (325)
                      .+.....+.....+.      -.+.|.++..+|+|.|+|.|.|..|+.+..+.|+|...+...++               
T Consensus       654 FPAA~eRRl~Vmped------d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlq  727 (873)
T KOG4194|consen  654 FPAARERRLHVMPED------DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQ  727 (873)
T ss_pred             CchhhhheeeecCCC------CEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEE
Confidence            443322222222222      47899999999999999999999999999999999766544333               


Q ss_pred             -------C---------CCceEE----EEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095         272 -------S---------DGRLNI----ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR  322 (325)
Q Consensus       272 -------~---------~~~~~~----~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  322 (325)
                             .         ++...+    ...++...|.+.+...+|+|.|+|...|..|.....+.+.|-.+
T Consensus       728 C~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~  798 (873)
T KOG4194|consen  728 CLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQK  798 (873)
T ss_pred             EecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeec
Confidence                   1         111111    12345567899999999999999999999998887776665443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.94  E-value=2.5e-25  Score=184.94  Aligned_cols=236  Identities=21%  Similarity=0.303  Sum_probs=155.1

Q ss_pred             ceeeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCccccccccccccc-----cc--CCCCeeEecCCceEecCCCe
Q psy1095          10 SLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTR-----RL--TSSPRFYAVPHNKICDLGDT   82 (325)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~-----~~--~~~p~~~~~~~~~~v~~g~~   82 (325)
                      ...++|.+.+..... .......+.+.|.++..+|+|.|+|.+.|..+...     .+  ..+|.+...+.+..+.+|..
T Consensus        60 ~~~i~W~K~g~~~~~-~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~  138 (326)
T PHA02785         60 ILDILWEKRGADNDR-IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERST  138 (326)
T ss_pred             CceEEEEECCCccce-EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCc
Confidence            456788887643221 11111233577999999999999999998764221     12  13344443445556789999


Q ss_pred             EEEEEE-----EEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE----EEEEE
Q psy1095          83 VRFQCS-----VTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE----ATARL  153 (325)
Q Consensus        83 v~l~C~-----~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~l  153 (325)
                      +.|.|.     ..+.|.+.++|+++.. + ...++....   ...|.|.+++.+|+|.|+|.+.|..+...    ..+.|
T Consensus       139 ~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l  213 (326)
T PHA02785        139 GEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRT---PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKL  213 (326)
T ss_pred             EEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecC---CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEE
Confidence            999997     2456888999998643 2 223433321   23699999999999999999998766443    23445


Q ss_pred             EEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCC-ceEEEecC------Ccce
Q psy1095         154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDM-KPEVQVDS------KENL  225 (325)
Q Consensus       154 ~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~-~~~~~~~~------~~~~  225 (325)
                      .|...   ..+|.+ ..+....+..|+.++|.|.+.+.|++ .+.+.|+++|..+...... .......+      ....
T Consensus       214 ~V~~~---~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~  289 (326)
T PHA02785        214 EVRDR---IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRV  289 (326)
T ss_pred             EEecc---CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccccccee
Confidence            55432   123433 33456677789999999999988752 2589999999987543211 11111111      0112


Q ss_pred             eEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         226 VIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       226 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      ....|.|.+++.+|+|.|+|.|.|..+...
T Consensus       290 ~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        290 ITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             eeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence            356899999999999999999999875433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.93  E-value=2.1e-23  Score=173.49  Aligned_cols=157  Identities=17%  Similarity=0.190  Sum_probs=110.1

Q ss_pred             ecCCCeEEEEEEE-----EecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          77 CDLGDTVRFQCSV-----TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        77 v~~g~~v~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      +.+|+.+.|.|.+     .|.|.++++|+|++....   +.... .+ ...|.|.++..+|+|.|+|.+.|..+....++
T Consensus        38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~-~~-g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~  112 (326)
T PHA02785         38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPI-DN-GSNMLILNPTQSDSGIYICITKNETYCDMMSL  112 (326)
T ss_pred             hhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEc-cC-CceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence            5579999999996     678889999999875321   11111 12 23478999999999999999999988777788


Q ss_pred             EEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-----EecCCCCCeeEEeeCCEEeccCCCCceEEEecCCccee
Q psy1095         152 RLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-----QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV  226 (325)
Q Consensus       152 ~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-----~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (325)
                      .|.|.....    +.+........+.+|..+.|.|..     .+.++  +.+.|+++.. +. ..+  ... .      .
T Consensus       113 ~L~V~~~~~----~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~--~~i~W~k~~~-~~-~~r--~~~-~------~  175 (326)
T PHA02785        113 NLTIVSVSE----SNIDLISYPQIVNERSTGEMVCPNINAFIASNVN--ADIIWSGHRR-LR-NKR--LKQ-R------T  175 (326)
T ss_pred             EEEEEecCC----CccceeeccceecccCcEEEECCChhhcccCCCC--ceEEEccCCc-cC-Ccc--eEe-c------C
Confidence            888865421    222112233456789999999972     34555  8999987642 21 111  111 1      1


Q ss_pred             EEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         227 IARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       227 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      .+.|.|.+++.+|.|.|+|.+.|..+...
T Consensus       176 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~  204 (326)
T PHA02785        176 PGIITIEDVRKNDAGYYTCVLKYIYGDKT  204 (326)
T ss_pred             CCeEEEeecChhhCeEEEEEEEeccCCEE
Confidence            24899999999999999999999877643

>KOG4222|consensus

Probab=99.92  E-value=4e-24  Score=190.89  Aligned_cols=257  Identities=25%  Similarity=0.385  Sum_probs=194.1

Q ss_pred             CCCCcccccccccccccccCC-------CCeeEecCCceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCC--CCCcEE
Q psy1095          44 SSRTFTPYSLNSAIRTRRLTS-------SPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPAT--PNARVT  113 (325)
Q Consensus        44 d~G~Y~c~~~~~~~~~~~~~~-------~p~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~--~~~~~~  113 (325)
                      |.|.|+|.+.+..+..+....       +-.|-+.|..+.+..|+.+.|.|.- .+.|.|.+.|.|+|+++.  ......
T Consensus       103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~  182 (1281)
T KOG4222|consen  103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA  182 (1281)
T ss_pred             CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence            999999999988776655443       2344456667778899999999985 568899999999999887  333333


Q ss_pred             EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE-EEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecC
Q psy1095         114 IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP  192 (325)
Q Consensus       114 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~  192 (325)
                      +...+   .|.|.+++..|+|.|.|.+.|..|..+ ....|.|.++      |.|...+....+..|..+.+.|.+.|.|
T Consensus       183 lisgG---~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~------P~f~~rp~~~~v~~g~~~~f~c~v~GdP  253 (1281)
T KOG4222|consen  183 LISGG---NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEK------PWFWKRPKDLAVLVGAAAEFDCRVGGDP  253 (1281)
T ss_pred             EecCC---cEEEeccccCCCceeeeeecccccccccccceeeeccC------CccccccccceeecccccccccccCCCC
Confidence            33333   499999999999999999999888553 4567888775      7777777888899999999999999998


Q ss_pred             CCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecC-
Q psy1095         193 PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLT-  271 (325)
Q Consensus       193 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~-  271 (325)
                      .  +.++|.+++..+........   .+      ..+|.|.+++..|.|.|.|.+.|..|.....+.++|...++-... 
T Consensus       254 ~--P~Vrwkk~~~~~P~~ry~i~---~d------~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp  322 (1281)
T KOG4222|consen  254 Q--PTVRWKKDDPSLPRSRYSIL---DD------TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKP  322 (1281)
T ss_pred             C--CceeeeccCCCCCccceeee---ec------cccccccccCCCcccceeeeccccccccccccceEEecCccccccc
Confidence            8  89999998777765433221   22      247999999999999999999999999999998888654432111 


Q ss_pred             ----------------------------CCCceEEEE------------eCCEEEEEEcCCCCCCCeEEEEEEECCCeeE
Q psy1095         272 ----------------------------SDGRLNIIT------------VGGTSVLTIEDITGDDSGKYQVHVSNQHGSD  311 (325)
Q Consensus       272 ----------------------------~~~~~~~~~------------~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~  311 (325)
                                                  ..+...+.+            .....+|.|.++...|.|.|.|...+..|..
T Consensus       323 ~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss  402 (1281)
T KOG4222|consen  323 RDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSS  402 (1281)
T ss_pred             CccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccccc
Confidence                                        000000000            0112379999999999999999999988877


Q ss_pred             EeEEEEEEe
Q psy1095         312 SCYASVAVE  320 (325)
Q Consensus       312 ~~~~~l~V~  320 (325)
                      .....+.+.
T Consensus       403 ~~~a~~~qt  411 (1281)
T KOG4222|consen  403 LTKAYLEQT  411 (1281)
T ss_pred             ccceeEEEE
Confidence            766555554

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.87  E-value=1.6e-20  Score=146.78  Aligned_cols=160  Identities=20%  Similarity=0.305  Sum_probs=113.4

Q ss_pred             CceEecCCCeEEEEEEEEecC-----------CCeeEEeeCCeeC--C-CCCc---E--E-EEecCCeEEEEEccCCCCC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQP-----------APWTSWSKDGKPA--T-PNAR---V--T-IREKEDLRFLEISEVTLED  132 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p-----------~~~v~W~~~~~~~--~-~~~~---~--~-~~~~~~~~~l~i~~~~~~d  132 (325)
                      .+..+.+|++|.|.|.+.+.|           .+.+.|+|++...  . ...+   .  . .........|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            345688999999999986643           4589999987542  1 1111   0  0 0001123479999999999


Q ss_pred             CeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCC---CCCeeEEeeCCEEecc
Q psy1095         133 AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPP---NDHDISWFRNNRLIKL  209 (325)
Q Consensus       133 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~---~~~~~~W~~~~~~~~~  209 (325)
                      +|.|+|.+.|..+.....+.|.|...      +      ....+.+|+.+.|.|.+.+.++   +.+++.|+|++..+..
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~------~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~  177 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSG------T------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY  177 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecC------C------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC
Confidence            99999999998887777788877432      1      1335678999999999864321   1289999999999875


Q ss_pred             CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ..+...  ...+      ..|.|.+++.+|+|.|+|.|.....
T Consensus       178 ~~r~~~--~~~~------~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        178 TDRIQL--RNNN------STLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             CCCEEE--eCCC------CEEEECcCCHHhCEEEEEEEEEeEC
Confidence            543221  1222      4799999999999999999988643

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.78  E-value=8e-18  Score=114.49  Aligned_cols=94  Identities=30%  Similarity=0.479  Sum_probs=86.3

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      |.|...|....+..|+.+.|.|.+.|.|.+.+.|+|++..+....++.+........|.|.++..+|+|.|+|.+.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            67888899999999999999999999999999999999999877777777766678899999999999999999999999


Q ss_pred             eEEEEEEEEEECCC
Q psy1095         146 SVEATARLEIMDPR  159 (325)
Q Consensus       146 ~~~~~~~l~v~~~~  159 (325)
                      ...+.+.|.|.+.|
T Consensus        81 ~~~~~~~l~V~~~P   94 (98)
T cd05762          81 SRQAQVNLTVVDKP   94 (98)
T ss_pred             ceeEEEEEEEecCC
Confidence            99999999998874

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.72  E-value=2e-16  Score=106.89  Aligned_cols=90  Identities=33%  Similarity=0.566  Sum_probs=79.9

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .||.|...|....+.+|+.+.|.|.+.+.|.|.+.|++++..+....++.+........|.|.+++.+|+|.|+|.+.|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            47888899999999999999999999999999999999999988777777766666678999999999999999999999


Q ss_pred             CeeEEEEEEE
Q psy1095         144 YGSVEATARL  153 (325)
Q Consensus       144 ~~~~~~~~~l  153 (325)
                      .|.....+.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9987776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.72  E-value=1.9e-16  Score=107.72  Aligned_cols=97  Identities=24%  Similarity=0.344  Sum_probs=80.1

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.|...+....+..|+.+.|.|.+.|.|+  +.+.|+|++..+..+.+....  ...    ..+.|.|.++..+|+|.|+
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~--p~v~W~kdg~~l~~~~~~~~~--~~~----~~s~L~I~~~~~~D~G~Yt   72 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQP--ITCTWMKFRKQIQEGEGIKIE--NTE----NSSKLTITEGQQEHCGCYT   72 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCC--CceEEEECCEEecCCCcEEEE--ecC----CeeEEEECCCChhhCEEEE
Confidence            34566667788999999999999999998  899999999998755543322  222    2478999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEEEeeCCee
Q psy1095         245 CRVANELGEVVTSACLIVDVVKGKD  269 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v~~~~~~~  269 (325)
                      |.|.|..|.....+.|.|...++++
T Consensus        73 c~a~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          73 LEVENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             EEEEcCCCceeEEEEEEEecCCCCC
Confidence            9999999999999999997776543

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.72  E-value=1.2e-16  Score=106.63  Aligned_cols=87  Identities=24%  Similarity=0.390  Sum_probs=75.2

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....++..  .  ...|.|.+++.+|+|.|+|.+.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~--~--~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM--S--GAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec--C--CCEEEECcCChhhCEEEEEEEEcCC
Confidence            68899999999999999999999999999999999999988765443322  2  2369999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy1095         145 GSVEATARLEI  155 (325)
Q Consensus       145 ~~~~~~~~l~v  155 (325)
                      |.....+.|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence            98888887776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.71  E-value=4.7e-16  Score=104.98  Aligned_cols=90  Identities=34%  Similarity=0.618  Sum_probs=83.4

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      |.|...|.+..+.+|+++.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++..+|+|.|+|.+.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            67888899999999999999999999999999999999999888888888878889999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy1095         146 SVEATARLEI  155 (325)
Q Consensus       146 ~~~~~~~l~v  155 (325)
                      .....+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            8888887765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.68  E-value=1.8e-15  Score=102.15  Aligned_cols=85  Identities=27%  Similarity=0.492  Sum_probs=72.0

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      .|....+.+|+++.|.|.+.|.|.|.+.|+|++.++....++.+... +....|.|.+++.+|+|.|+|.+.|..|....
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            45566789999999999999999999999999999987777766544 34567999999999999999999999998777


Q ss_pred             EEEEEE
Q psy1095         150 TARLEI  155 (325)
Q Consensus       150 ~~~l~v  155 (325)
                      .+.|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            766653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.67  E-value=2.5e-15  Score=99.62  Aligned_cols=82  Identities=30%  Similarity=0.537  Sum_probs=70.8

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR  152 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  152 (325)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++++.++... .++.+........|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            356889999999999999999999999999998754 4666666566678999999999999999999999998887777


Q ss_pred             EEE
Q psy1095         153 LEI  155 (325)
Q Consensus       153 l~v  155 (325)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.67  E-value=1.9e-16  Score=123.97  Aligned_cols=109  Identities=18%  Similarity=0.205  Sum_probs=81.7

Q ss_pred             CCCCCCcccCCCCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEEEEEEEE-----ecCCCeeEEeeCCeeC
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVT-----GQPAPWTSWSKDGKPA  106 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-----~~p~~~v~W~~~~~~~  106 (325)
                      ..+|.|.+++.+|+|.|+|.+.+..... .......+...+.+..+.+|+++.|.|.+.     +.|.|.++|+|++.++
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l  175 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV  175 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC
Confidence            4588999999999999999998865431 111111222223345678899999999975     2457899999999999


Q ss_pred             CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095         107 TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      ....++.+...  ..+|.|.+++.+|+|.|+|.+...
T Consensus       176 ~~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        176 LYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             CCCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEe
Confidence            87666665432  347999999999999999999764

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.66  E-value=4.4e-15  Score=101.08  Aligned_cols=83  Identities=20%  Similarity=0.351  Sum_probs=69.2

Q ss_pred             ceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecC-----CeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          74 NKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKE-----DLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      ...+.+|+++.|.|.+.| .|.|.+.|+|+|.++...........+     ....|.|.++..+|+|.|+|.+.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            566889999999999999 899999999999999755443333221     24679999999999999999999999988


Q ss_pred             EEEEEEEEE
Q psy1095         148 EATARLEIM  156 (325)
Q Consensus       148 ~~~~~l~v~  156 (325)
                      ...+.|.|.
T Consensus        92 ~~t~~L~V~  100 (101)
T cd04975          92 SLTFELYVN  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.65  E-value=3.9e-15  Score=99.71  Aligned_cols=87  Identities=23%  Similarity=0.426  Sum_probs=73.1

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      ||.+...|....+.+|+++.|.|.+.|.|.|.++|++++..+.......    .....|.|.+++.+|+|.|+|.+.|..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~   76 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIK   76 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECC
Confidence            5677788888889999999999999999999999999887665443332    123479999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy1095         145 GSVEATARLEI  155 (325)
Q Consensus       145 ~~~~~~~~l~v  155 (325)
                      |.......|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd04968          77 GKDTHQGRIYV   87 (88)
T ss_pred             CcEEEEEEEEE
Confidence            98888887776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.65  E-value=7e-15  Score=98.83  Aligned_cols=87  Identities=22%  Similarity=0.368  Sum_probs=71.5

Q ss_pred             EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE  148 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  148 (325)
                      +..|....+.+|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|+|.+.|..|...
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~   83 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN   83 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence            44566667999999999999999999999999999988655443333334456899999999999999999999999888


Q ss_pred             EEEEEEE
Q psy1095         149 ATARLEI  155 (325)
Q Consensus       149 ~~~~l~v  155 (325)
                      +.+.|.|
T Consensus        84 ~~~~L~v   90 (90)
T cd04972          84 VSVQVTV   90 (90)
T ss_pred             EEEEEeC
Confidence            8777653

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.64  E-value=8.6e-15  Score=99.86  Aligned_cols=91  Identities=20%  Similarity=0.464  Sum_probs=73.3

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-----CcEEEEecCCeEEEEEccCCCCCCeEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-----ARVTIREKEDLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                      .|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+...     .++.+........|.|.+++.+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            577777777766767899999999999999999999998776432     233333334456799999999999999999


Q ss_pred             EEeCCeeEEEEEEEEE
Q psy1095         140 VENNYGSVEATARLEI  155 (325)
Q Consensus       140 ~~~~~~~~~~~~~l~v  155 (325)
                      +.|..|.....+.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999998888887764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.64  E-value=6.9e-15  Score=100.11  Aligned_cols=91  Identities=31%  Similarity=0.529  Sum_probs=73.4

Q ss_pred             CCeeEecCC--ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          65 SPRFYAVPH--NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        65 ~p~~~~~~~--~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      ||.|...+.  ...+..|+++.|.|.+.|.|.|.+.|++++..+... .++...  .....|.|.+++.+|+|.|+|.+.
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~   78 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAE   78 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEE
Confidence            455555443  446889999999999999999999999999988655 333332  233569999999999999999999


Q ss_pred             eCCeeEEEEEEEEEEC
Q psy1095         142 NNYGSVEATARLEIMD  157 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~  157 (325)
                      |..|.....+.|.|..
T Consensus        79 N~~G~~~~~~~L~V~~   94 (95)
T cd05730          79 NKAGEQEAEIHLKVFA   94 (95)
T ss_pred             cCCCeEEEEEEEEEEe
Confidence            9999988888888764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.63  E-value=3.1e-15  Score=99.77  Aligned_cols=86  Identities=26%  Similarity=0.380  Sum_probs=71.3

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.+...+.+..+.+|+.+.|.|.+.|.|.  +.+.|++++..+.....  .  ...+      ..|.|.+++.+|+|.|+
T Consensus         2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~--P~v~W~k~~~~~~~~~~--~--~~~~------~~L~I~~v~~~D~G~Y~   69 (88)
T cd05851           2 ADINVKFKDTYALKGQNVTLECFALGNPV--PVIRWRKILEPMPATAE--I--SMSG------AVLKIFNIQPEDEGTYE   69 (88)
T ss_pred             CceEEccccEEEeCCCcEEEEEEecccCC--CEEEEEECCcCCCCCCE--E--ecCC------CEEEECcCChhhCEEEE
Confidence            56677777888999999999999999998  89999999876653321  1  1222      47999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEE
Q psy1095         245 CRVANELGEVVTSACLIV  262 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v  262 (325)
                      |.|.|..|.....+.|.|
T Consensus        70 C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          70 CEAENIKGKDKHQARVYV   87 (88)
T ss_pred             EEEEcCCCceEEEEEEEE
Confidence            999999999988888876

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.63  E-value=1.4e-14  Score=96.86  Aligned_cols=87  Identities=26%  Similarity=0.459  Sum_probs=72.5

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEee-CCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      +.+.|.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.+...+....|.|.++..+|+|.|+|.+.|..|.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   81 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ   81 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence            456778888999999999999999998 899998 477777667777766666678999999999999999999999886


Q ss_pred             E-EEEEEEEE
Q psy1095         147 V-EATARLEI  155 (325)
Q Consensus       147 ~-~~~~~l~v  155 (325)
                      . .+++.|.+
T Consensus        82 ~~~~~i~l~~   91 (92)
T cd05866          82 TQEATVVLEI   91 (92)
T ss_pred             EEEEEEEEEE
Confidence            4 55666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.63  E-value=5.4e-15  Score=98.13  Aligned_cols=84  Identities=30%  Similarity=0.666  Sum_probs=71.6

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      +...|.+..+.+|+++.|.|.+.|.|.|.+.|++++..+....++....    ..|.|.+++.+|+|.|+|.+.|..|..
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA----GDLRITKLSLSDSGMYQCVAENKHGTI   77 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeC----CEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence            4556778889999999999999999999999999999987666555432    259999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy1095         148 EATARLEI  155 (325)
Q Consensus       148 ~~~~~l~v  155 (325)
                      .+.+.|.|
T Consensus        78 ~~~~~l~V   85 (85)
T cd05728          78 YASAELAV   85 (85)
T ss_pred             EEEEEEEC
Confidence            88777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.63  E-value=3.6e-15  Score=96.26  Aligned_cols=74  Identities=34%  Similarity=0.562  Sum_probs=63.1

Q ss_pred             CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      +|+++.|.|.+.|.|.|.++|+|++..+....+..+...   .+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            689999999999999999999999998876555544322   36999999999999999999999998888777654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.62  E-value=7.8e-15  Score=94.14  Aligned_cols=73  Identities=26%  Similarity=0.526  Sum_probs=61.3

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEecC-CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKE-DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      |.|.|.+.|.|.|.+.|+|++..+.. ..++.+...+ +..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            57999999999999999999999864 3566655433 3457999999999999999999999998888877764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.62  E-value=4.9e-15  Score=94.79  Aligned_cols=73  Identities=36%  Similarity=0.530  Sum_probs=63.5

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      |+++.|.|.+.|.|.|.+.|+|++..+....++.+...   .+|.|.+++.+|.|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            68899999999999999999999998877777766443   36999999999999999999999998888877764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.62  E-value=1.7e-14  Score=97.46  Aligned_cols=88  Identities=30%  Similarity=0.513  Sum_probs=70.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCC-CeeEEee-CCeeCCC-CCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPA-PWTSWSK-DGKPATP-NARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      +.+.|....+..|+++.|.|.+.|.|. |.++|++ ++..+.. ..++.+.. .+...+|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            456677778999999999999999985 7999998 7766654 33444433 233568999999999999999999998


Q ss_pred             C-eeEEEEEEEEE
Q psy1095         144 Y-GSVEATARLEI  155 (325)
Q Consensus       144 ~-~~~~~~~~l~v  155 (325)
                      . +...+++.|.|
T Consensus        83 ~~g~~~~s~~l~v   95 (96)
T cd05865          83 DEGESEATVNVKI   95 (96)
T ss_pred             CCCcEEEEEEEEE
Confidence            6 78888887776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.62  E-value=1.6e-14  Score=98.33  Aligned_cols=88  Identities=18%  Similarity=0.277  Sum_probs=68.3

Q ss_pred             CeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...+.+|+.+.|.|.+.| .|+  +.+.|+|+|..+......... ..........+.|.|..+..+|+|.|+|.|.|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~--p~v~W~Kdg~~i~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~   88 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPP--PHINWTYDNRTLTNKLTEIVT-SENESEYRYVSELKLVRLKESEAGTYTFLASNSD   88 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCC--CccEEEeCCeeCCCCcceeEE-EeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence            457889999999999999 666  899999999988744322111 1110111245789999999999999999999999


Q ss_pred             CcEEeEEEEEEE
Q psy1095         252 GEVVTSACLIVD  263 (325)
Q Consensus       252 ~~~~~~~~l~v~  263 (325)
                      |.....+.|.|.
T Consensus        89 G~~~~t~~L~V~  100 (101)
T cd04975          89 ASKSLTFELYVN  100 (101)
T ss_pred             ccEEEEEEEEEE
Confidence            999988888874

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.61  E-value=1.4e-14  Score=99.07  Aligned_cols=90  Identities=21%  Similarity=0.471  Sum_probs=70.8

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeCCC-----CCcEEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPATP-----NARVTIREKEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      +|.+.. +.+..+.+|++++|.|.+.|.|.|.+.|+++  +..+..     ..++.+.......+|.|.+++.+|+|.|+
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            566654 6778899999999999999999999999994  333321     23555544444568999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEE
Q psy1095         138 IKVENNYGSVEATARLEI  155 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v  155 (325)
                      |.+.|..|.....+.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999998777777653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.61  E-value=2.1e-14  Score=92.80  Aligned_cols=74  Identities=34%  Similarity=0.613  Sum_probs=65.3

Q ss_pred             eEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          82 TVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        82 ~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      .+.|.|.+.|.|.|.+.|+|++..+....++.+........|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            37899999999999999999999997777777776666788999999999999999999999998888777654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.61  E-value=2.4e-14  Score=97.63  Aligned_cols=83  Identities=24%  Similarity=0.332  Sum_probs=68.1

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec------CCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK------EDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      ...+..|+.+.|.|.+.|+|.|.+.|+|++.++....+......      ....+|.|.+++.+|+|.|+|.+.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            45678899999999999999999999999999876554332211      123579999999999999999999999988


Q ss_pred             EEEEEEEEE
Q psy1095         148 EATARLEIM  156 (325)
Q Consensus       148 ~~~~~l~v~  156 (325)
                      ..++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888887764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.61  E-value=2e-14  Score=98.10  Aligned_cols=90  Identities=22%  Similarity=0.465  Sum_probs=71.9

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-----CcEEEEecCCeEEEEEccCCCCCCeEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-----ARVTIREKEDLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                      +|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...     .++.+........|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            56775 455677899999999999999999999999998666432     234443334456899999999999999999


Q ss_pred             EEeCCeeEEEEEEEEE
Q psy1095         140 VENNYGSVEATARLEI  155 (325)
Q Consensus       140 ~~~~~~~~~~~~~l~v  155 (325)
                      +.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999998877777654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.61  E-value=2.3e-14  Score=96.78  Aligned_cols=89  Identities=24%  Similarity=0.429  Sum_probs=72.3

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+....+....  ..+    ..+.|.|.++..+|+|.|
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~--p~v~W~k~g~~l~~~~~~~~~--~~~----~~~~L~i~~~~~~D~G~Y   74 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPA--PTVTWMREGQIIVSSQRHQIT--STE----YKSTFEISKVQMSDEGNY   74 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCC--CEEEEEECCEECCCCCcEEEE--EcC----CeeEEEECCCCcccCEeE
Confidence            466666777888999999999999999998  899999999887654443322  222    246899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEE
Q psy1095         244 TCRVANELGEVVTSACL  260 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l  260 (325)
                      .|.|.|..|.....+.|
T Consensus        75 ~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          75 TVVVENSEGKQEAQFTL   91 (92)
T ss_pred             EEEEEcCCCCEeEEEEe
Confidence            99999999988877665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.60  E-value=2.2e-14  Score=96.80  Aligned_cols=90  Identities=32%  Similarity=0.573  Sum_probs=76.4

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.|...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+..+.+....  ..+    ..+.|.|.++..+|+|.|+
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~--~~v~W~~~~~~l~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~Y~   72 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPP--PTVTWYKNGRPLTSSQRYQIE--SDG----GSSSLTIKNVTREDAGTYT   72 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSS--SEEEEEETTEEEESSSSEEEE--EET----TEEEEEESSESGGGSEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCC--Ccccccccccceeeeeeeeee--ccc----ceeEEccCCCChhhCEEEE
Confidence            45666677888999999999999999987  899999999999886665544  322    4589999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEE
Q psy1095         245 CRVANELGEVVTSACLIV  262 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v  262 (325)
                      |.+.|..|.....+.|.|
T Consensus        73 C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   73 CVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEC
Confidence            999999999988888765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.60  E-value=3.4e-14  Score=95.63  Aligned_cols=85  Identities=27%  Similarity=0.493  Sum_probs=70.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      .|....+.+|+++.|.|.+.+.|.|.+.|++++..+....++..... +...+|.|.+++.+|+|.|+|.+.|..|....
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV   86 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence            35567789999999999999999999999999998877666554433 23457999999999999999999999998877


Q ss_pred             EEEEEE
Q psy1095         150 TARLEI  155 (325)
Q Consensus       150 ~~~l~v  155 (325)
                      .+.|.|
T Consensus        87 ~~~v~~   92 (92)
T cd05891          87 DVTVSV   92 (92)
T ss_pred             EEEEEC
Confidence            776653

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.60  E-value=3.3e-14  Score=95.96  Aligned_cols=84  Identities=24%  Similarity=0.459  Sum_probs=67.5

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+.+|+.+.|.|.+.|.|.  +.+.|++++..+....+...... .+    ....|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~--p~v~W~k~g~~l~~~~~~~~~~~-~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPD--PEVSWLKNDQALALSDHYNVKVE-QG----KYASLTIKGVSSEDSGKYGIVVKNKY   81 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCC--CeEEEEECCEECccCCCEEEEEc-CC----CEEEEEEccCChhhCEEEEEEEEECC
Confidence            3457889999999999999988  89999999998876554333211 11    23579999999999999999999999


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                      |.....+.|.|
T Consensus        82 G~~~~~~~v~v   92 (92)
T cd05737          82 GGETVDVTVSV   92 (92)
T ss_pred             CcceEEEEEeC
Confidence            99888877754

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.60  E-value=2.8e-14  Score=91.14  Aligned_cols=71  Identities=35%  Similarity=0.643  Sum_probs=60.9

Q ss_pred             eEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          82 TVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        82 ~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      ++.|.|.+.|.|.|.++|+|++..+....++.+...+   .|.|.+++.+|+|.|+|.+.|..|...+.+.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999988777676665443   3888899999999999999999999888877764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.59  E-value=6.8e-14  Score=102.21  Aligned_cols=125  Identities=20%  Similarity=0.285  Sum_probs=87.6

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEe
Q psy1095         122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF  201 (325)
Q Consensus       122 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~  201 (325)
                      +|.|.+++..|+|.|.|.+.+..+.....+.|.|..+      |.+...+.......|+.+.|.|.+.++++..+.+.|+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~------P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~   75 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP------PRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT   75 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC------CceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence            5899999999999999999987777788888888765      4444444444444788999999999976643689999


Q ss_pred             eCCEEecc-----CCC-CceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         202 RNNRLIKL-----DSD-MKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       202 ~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +++.....     ... ........+..+...+.|.+..-..++.+.|+|.+.+...
T Consensus        76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            98754221     111 0011112223444567888877666677799999987643

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.59  E-value=5.5e-14  Score=93.19  Aligned_cols=83  Identities=20%  Similarity=0.354  Sum_probs=66.5

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+..|+.+.|.|.+.|.|+  |.+.|++++..+..... +.......    ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~--P~v~W~k~~~~i~~~~~-r~~~~~~~----~~~~L~I~~~~~~D~G~Y~c~a~N~~G   76 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPA--PTVTWSRGDKAFTETEG-RVRVESYK----DLSSFVIEGAEREDEGVYTITVTNPVG   76 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCC--CeEEEEECCEECccCCC-eEEEEEcC----CeEEEEECCCccCcCEEEEEEEEeCCC
Confidence            356788999999999999999  89999999998865421 11211222    246899999999999999999999999


Q ss_pred             cEEeEEEEEE
Q psy1095         253 EVVTSACLIV  262 (325)
Q Consensus       253 ~~~~~~~l~v  262 (325)
                      ....++.|.|
T Consensus        77 ~~~~~~~l~V   86 (86)
T cd05894          77 EDHASLFVKV   86 (86)
T ss_pred             cEEEEEEEEC
Confidence            9988887764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.59  E-value=2.4e-14  Score=91.91  Aligned_cols=75  Identities=33%  Similarity=0.541  Sum_probs=59.2

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|.  |.+.|+|++..+..... +.....++.   ....|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 v~l~C~v~G~P~--P~i~W~k~~~~i~~~~~-r~~~~~~~~---g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPP--PKIFWKRNNEMVQYNTD-RISLYQDNS---GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD   74 (75)
T ss_pred             CEEEEEEEecCC--CeEEEEECCEECcCCCC-eEEEEEcCC---CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence            479999999999  89999999998874322 222112210   224799999999999999999999999999998886


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      |
T Consensus        75 V   75 (75)
T cd05892          75 V   75 (75)
T ss_pred             C
Confidence            5

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.59  E-value=2.9e-14  Score=91.67  Aligned_cols=73  Identities=40%  Similarity=0.673  Sum_probs=60.7

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecC-CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKE-DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      |.|.|.+.|.|.|.++|+|++..+... .++.+...+ +...|.|.++..+|+|.|+|.+.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999999999999999988653 455554443 3346999999999999999999999999888877764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.58  E-value=4.8e-14  Score=97.17  Aligned_cols=91  Identities=29%  Similarity=0.572  Sum_probs=69.0

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-----CcEEEEecCCeEEEEEc--cCCCCCCeEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-----ARVTIREKEDLRFLEIS--EVTLEDAGLYT  137 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~--~~~~~d~G~Y~  137 (325)
                      ||.|...|....+.+|+++.|.|.+.|.|.|.+.|+|++..+...     .+......+....+.+.  .++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            688999999999999999999999999999999999999988651     12222223333333333  34689999999


Q ss_pred             EEEEeCCee-EEEEEEEEE
Q psy1095         138 IKVENNYGS-VEATARLEI  155 (325)
Q Consensus       138 C~~~~~~~~-~~~~~~l~v  155 (325)
                      |.+.|..|. ....+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999987 455666655

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.58  E-value=1.2e-14  Score=93.73  Aligned_cols=74  Identities=28%  Similarity=0.512  Sum_probs=61.6

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      +|+.+.|.|.+.|.|.  |.+.|++++..+........  ...       ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         1 eG~~v~l~C~~~g~P~--p~i~W~k~g~~~~~~~~~~~--~~~-------~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   69 (74)
T cd05745           1 EGQTVDFLCEAQGYPQ--PVIAWTKGGSQLSVDRRHLV--LSS-------GTLRISRVALHDQGQYECQAVNIVGSQRTV   69 (74)
T ss_pred             CCCeEEEEeECCEecC--CEEEEEECCEECCCCCCeEE--ccC-------CeEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence            5889999999999998  89999999988765433211  122       489999999999999999999999999988


Q ss_pred             EEEEE
Q psy1095         258 ACLIV  262 (325)
Q Consensus       258 ~~l~v  262 (325)
                      +.|.|
T Consensus        70 ~~L~V   74 (74)
T cd05745          70 AQLTV   74 (74)
T ss_pred             EEEeC
Confidence            88764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.58  E-value=1.7e-14  Score=92.25  Aligned_cols=73  Identities=29%  Similarity=0.511  Sum_probs=60.7

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.+.|.|.+.|.|.  +.+.|+|++..+..+.++..  ..+       ..|.|.+++.+|+|.|.|.|.|..|....++
T Consensus         1 G~~~~l~C~~~g~P~--p~v~W~k~~~~l~~~~r~~~--~~~-------g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   69 (73)
T cd05852           1 GGRVIIECKPKAAPK--PKFSWSKGTELLVNNSRISI--WDD-------GSLEILNITKLDEGSYTCFAENNRGKANSTG   69 (73)
T ss_pred             CCeEEEEEecceeCC--CEEEEEeCCEecccCCCEEE--cCC-------CEEEECcCChhHCEEEEEEEECCCCceeEEE
Confidence            678999999999988  89999999987754443222  122       3799999999999999999999999999988


Q ss_pred             EEEE
Q psy1095         259 CLIV  262 (325)
Q Consensus       259 ~l~v  262 (325)
                      .|.|
T Consensus        70 ~l~~   73 (73)
T cd05852          70 VLSV   73 (73)
T ss_pred             EEEC
Confidence            8864

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.58  E-value=3.2e-14  Score=97.04  Aligned_cols=89  Identities=20%  Similarity=0.271  Sum_probs=68.4

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+..|+.+.|.|.+.|+|+  |.+.|+|++.++..+..........-......+.|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~--P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g   89 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPP--PQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA   89 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCC--CceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence            346778999999999999998  899999999998754432111000000112346899999999999999999999999


Q ss_pred             cEEeEEEEEEE
Q psy1095         253 EVVTSACLIVD  263 (325)
Q Consensus       253 ~~~~~~~l~v~  263 (325)
                      ....++.|.|.
T Consensus        90 ~~~~t~~l~V~  100 (101)
T cd05859          90 VKSYTFALQIQ  100 (101)
T ss_pred             eEEEEEEEEEE
Confidence            99988888874

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.58  E-value=5.8e-14  Score=91.56  Aligned_cols=73  Identities=33%  Similarity=0.516  Sum_probs=63.0

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR  152 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  152 (325)
                      |+++.|.|.+.|.|.|.++|++++..+....++.+...++...|.|.++..+|+|.|+|.+.|..|.......
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   73 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD   73 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence            7899999999999999999999998887777777666666678999999999999999999999887654433

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.57  E-value=2.8e-14  Score=88.96  Aligned_cols=66  Identities=32%  Similarity=0.493  Sum_probs=55.8

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      +.|.|.+.|.|.|.++|+|+|.++...        .....|.|.++..+|+|.|+|.+.|..|....++.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            479999999999999999999988632        223479999999999999999999999977777766653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.57  E-value=9.9e-14  Score=92.47  Aligned_cols=85  Identities=25%  Similarity=0.374  Sum_probs=66.0

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.++|.|.+.|.|+  +.+.|++++..+..... +.............+.|.|.++..+|+|.|+|.|.|..|.....+
T Consensus         1 g~~~~l~C~~~g~p~--~~i~W~k~~~~i~~~~~-r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~   77 (88)
T cd05735           1 GQKKEMSCTAHGEKP--IIVRWEKEDRIINPEMS-RYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGII   77 (88)
T ss_pred             CCeEEEEEEEECCCC--CEEEEeeCCEECCCCCC-cEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEE
Confidence            788999999999987  89999999987754321 222111111122457899999999999999999999999999999


Q ss_pred             EEEEEeeC
Q psy1095         259 CLIVDVVK  266 (325)
Q Consensus       259 ~l~v~~~~  266 (325)
                      .|.|...+
T Consensus        78 ~L~V~~~P   85 (88)
T cd05735          78 QLTVQEPP   85 (88)
T ss_pred             EEEEeCCC
Confidence            99996554

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.57  E-value=8e-14  Score=90.42  Aligned_cols=75  Identities=24%  Similarity=0.467  Sum_probs=61.0

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.+.|.|.+.|.|.  |.+.|++++..+.............       ..|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus         1 G~~v~l~C~~~G~P~--p~i~W~k~g~~i~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   71 (76)
T cd05867           1 GETARLDCQVEGIPT--PNITWSINGAPIEGTDPDPRRHVSS-------GALILTDVQPSDTAVYQCEARNRHGNLLANA   71 (76)
T ss_pred             CCeEEEEEEeeEeCC--CeEEEEECCEECCCCCCCceEEeeC-------CEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence            678999999999998  8999999998876543221111112       4799999999999999999999999999888


Q ss_pred             EEEE
Q psy1095         259 CLIV  262 (325)
Q Consensus       259 ~l~v  262 (325)
                      .|.|
T Consensus        72 ~l~V   75 (76)
T cd05867          72 HVHV   75 (76)
T ss_pred             EEEE
Confidence            8876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.57  E-value=4.7e-14  Score=91.32  Aligned_cols=75  Identities=23%  Similarity=0.444  Sum_probs=61.2

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE-EEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      |+.+.|.|.+.|.|.|.++|++++.++...... .....+  ..|.|.+++..|+|.|+|.+.|..|...+++.|.|+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            688999999999999999999999988543211 111222  368999999999999999999999999988888773

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.56  E-value=1.1e-13  Score=94.15  Aligned_cols=83  Identities=28%  Similarity=0.380  Sum_probs=67.0

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+..|+.+.|.|.+.|.|.  +.+.|++++..+.... ........      .+.|.|.+++.+|.|.|+|.|.|..|
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~--p~v~W~k~g~~~~~~~-~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (95)
T cd05730          12 NATANLGQSVTLACDADGFPE--PTMTWTKDGEPIESGE-EKYSFNED------GSEMTILDVDKLDEAEYTCIAENKAG   82 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCC--CEEEEEECCEECcCCC-CEEEEeCC------CCEEEECCCChhhCEEEEEEEEcCCC
Confidence            346789999999999999998  8999999998876541 11211122      24799999999999999999999999


Q ss_pred             cEEeEEEEEEEe
Q psy1095         253 EVVTSACLIVDV  264 (325)
Q Consensus       253 ~~~~~~~l~v~~  264 (325)
                      .....+.|.|..
T Consensus        83 ~~~~~~~L~V~~   94 (95)
T cd05730          83 EQEAEIHLKVFA   94 (95)
T ss_pred             eEEEEEEEEEEe
Confidence            999999888853

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.56  E-value=8.1e-14  Score=89.88  Aligned_cols=73  Identities=33%  Similarity=0.550  Sum_probs=60.4

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      +.|.|.+.|.|.|.+.|+|++..+.. ..++.+... .+..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            57999999999999999999998874 345555433 34457999999999999999999999998888777654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.56  E-value=9.5e-14  Score=92.45  Aligned_cols=81  Identities=32%  Similarity=0.584  Sum_probs=65.8

Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEE-EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL  153 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  153 (325)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+|++..+....+.. ........+|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            347789999999999999999999999999987654321 1122334579999999999999999999999988887776


Q ss_pred             EE
Q psy1095         154 EI  155 (325)
Q Consensus       154 ~v  155 (325)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            54

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=9e-14  Score=90.20  Aligned_cols=74  Identities=27%  Similarity=0.508  Sum_probs=60.6

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE-EEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      |+++.|.|.+.|.|.|.++|++++.++...... .....  ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999999999999999999999988654211 11111  236999999999999999999999998888888776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.56  E-value=1.5e-13  Score=91.52  Aligned_cols=80  Identities=23%  Similarity=0.492  Sum_probs=66.9

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEe--c--CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIRE--K--EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~--~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      |+.+.|.|.+.|.|.+.++|++++..+... .++.+..  .  .....|.|.++...|+|.|+|.+.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            789999999999999999999999888543 3554432  1  1235799999999999999999999999999999999


Q ss_pred             EECCC
Q psy1095         155 IMDPR  159 (325)
Q Consensus       155 v~~~~  159 (325)
                      |...|
T Consensus        81 V~~~P   85 (88)
T cd05735          81 VQEPP   85 (88)
T ss_pred             EeCCC
Confidence            98764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.56  E-value=5.6e-14  Score=90.45  Aligned_cols=73  Identities=36%  Similarity=0.536  Sum_probs=63.1

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      |+.+.|.|.+.|.|.|.++|++++..+....++.+...   ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            68899999999999999999999999877666665433   35999999999999999999999998888777654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.55  E-value=6.9e-14  Score=89.90  Aligned_cols=75  Identities=32%  Similarity=0.425  Sum_probs=58.6

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|.  |.+.|+|++..+..... +......+   .....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         1 v~l~C~v~G~P~--P~v~W~k~~~~l~~~~~-~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPH--PQIFWKKENESLTHNTD-RVSMHQDN---CGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD   74 (75)
T ss_pred             CEEEEEEeEecC--CEEEEEECCEECCCCCC-eEEEEEcC---CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence            479999999999  89999999998864322 22211121   0224699999999999999999999999999988886


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      |
T Consensus        75 V   75 (75)
T cd05893          75 V   75 (75)
T ss_pred             C
Confidence            4

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.55  E-value=1.2e-13  Score=92.84  Aligned_cols=83  Identities=18%  Similarity=0.336  Sum_probs=65.8

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+..|+.+.|.|.+.|.|.  +.+.|++++..+.........  ...    ....|.|.++..+|.|.|.|.|.|..
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~--p~v~W~~~g~~~~~~~~~~~~--~~~----~~~~L~I~~v~~~D~g~Y~C~A~N~~   79 (90)
T cd04972           8 NATVVYEGGTATIRCTAEGSPL--PKVEWIIAGLIVIQTRTDTLE--TTV----DIYNLQLSNITSETQTTVTCTAENPV   79 (90)
T ss_pred             cCEEEcCCCcEEEEEEEEEcCC--CeEEEEECCEEccCCccEEEE--ecC----CEEEEEEecCCcccCEEEEEEEECCC
Confidence            3455889999999999999998  899999999887543321111  111    24689999999999999999999999


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                      |.....+.|.|
T Consensus        80 G~~~~~~~L~v   90 (90)
T cd04972          80 GQANVSVQVTV   90 (90)
T ss_pred             CceeEEEEEeC
Confidence            99888887754

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.55  E-value=1.2e-13  Score=89.46  Aligned_cols=75  Identities=24%  Similarity=0.454  Sum_probs=61.4

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.+.|.|.+.|.|.  |.+.|++++.++......... ..++      ..|.|.+++.+|+|.|.|.|.|..|....++
T Consensus         1 g~~~~l~C~a~G~P~--P~i~W~k~g~~i~~~~~~~~~-~~~~------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~   71 (76)
T cd05868           1 GEDGTLICRANGNPK--PSISWLTNGVPIEIAPTDPSR-KVDG------DTIIFSKVQERSSAVYQCNASNEYGYLLANA   71 (76)
T ss_pred             CCCEEEEEEeeEeCC--CeEEEEECCEEccccCCCceE-EecC------CEEEECCCCHhhCEEEEEEEEcCCCEEEEEE
Confidence            678999999999998  899999999988643322111 1222      3789999999999999999999999999999


Q ss_pred             EEEE
Q psy1095         259 CLIV  262 (325)
Q Consensus       259 ~l~v  262 (325)
                      .|.|
T Consensus        72 ~l~v   75 (76)
T cd05868          72 FVNV   75 (76)
T ss_pred             EEEe
Confidence            8876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.55  E-value=5.4e-14  Score=93.31  Aligned_cols=81  Identities=23%  Similarity=0.477  Sum_probs=66.8

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      .+....+..|+.+.|.|.+.|.|.  +.+.|++++..+....+..    ..+      ..|.|.++..+|+|.|+|.|.|
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~--p~v~W~k~g~~~~~~~~~~----~~~------~~L~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPR--PAYRWLKNGQPLASENRIE----VEA------GDLRITKLSLSDSGMYQCVAEN   72 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCC--CEEEEEECCEECCCCCeEE----EeC------CEEEEeeCCHHHCEEEEEEEEC
Confidence            345677889999999999999998  8999999999876543321    112      3799999999999999999999


Q ss_pred             CCCcEEeEEEEEE
Q psy1095         250 ELGEVVTSACLIV  262 (325)
Q Consensus       250 ~~~~~~~~~~l~v  262 (325)
                      ..|....++.|.|
T Consensus        73 ~~G~~~~~~~l~V   85 (85)
T cd05728          73 KHGTIYASAELAV   85 (85)
T ss_pred             CCCeEEEEEEEEC
Confidence            9999888887764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.54  E-value=2e-13  Score=91.39  Aligned_cols=84  Identities=25%  Similarity=0.402  Sum_probs=67.5

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR  246 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  246 (325)
                      +...+....+.+|+.+.|.|.+.|.|.  +.+.|++++..+.......    .      ....|.|.+++.+|+|.|.|.
T Consensus         4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~--p~v~W~k~~~~~~~~~~~~----~------~~~~L~i~~v~~~D~G~Y~C~   71 (88)
T cd04968           4 IVVFPKDTYALKGQNVTLECFALGNPV--PQIKWRKVDGSMPSSAEIS----M------SGAVLKIPNIQFEDEGTYECE   71 (88)
T ss_pred             EEECCCceEEeCCCcEEEEEEeeEeCC--CEEEEEECCCcCCCccEEE----E------eCCEEEECCCCcccCEEEEEE
Confidence            344455677889999999999999998  8999999887654332211    1      225899999999999999999


Q ss_pred             EEeCCCcEEeEEEEEE
Q psy1095         247 VANELGEVVTSACLIV  262 (325)
Q Consensus       247 ~~~~~~~~~~~~~l~v  262 (325)
                      |.|..|.....+.|.|
T Consensus        72 a~N~~G~~~~~~~l~V   87 (88)
T cd04968          72 AENIKGKDTHQGRIYV   87 (88)
T ss_pred             EEECCCcEEEEEEEEE
Confidence            9999999988888876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.54  E-value=1.5e-13  Score=92.77  Aligned_cols=87  Identities=26%  Similarity=0.381  Sum_probs=64.0

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      +....+..|+.+.|.|.+.|.|.+ +.+.|++ ++..+..... +.......   ...+.|.|.+++.+|+|.|+|.|.|
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~-p~i~W~~~~g~~l~~~~~-r~~v~~~~---~~~~~L~I~~v~~~D~G~YtC~A~N   81 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKD-KDISWFSPNGEKLTPNQQ-RISVVRND---DYSSTLTIYNANIDDAGIYKCVVSN   81 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCC-CEEEEECCCCcCccccCC-eEEEEeCC---CCceEEEEeccChhhCEEEEEEEEc
Confidence            345568889999999999999852 6999998 6655543221 11111111   0246899999999999999999999


Q ss_pred             CC-CcEEeEEEEEE
Q psy1095         250 EL-GEVVTSACLIV  262 (325)
Q Consensus       250 ~~-~~~~~~~~l~v  262 (325)
                      .. |....++.|.|
T Consensus        82 ~~~g~~~~s~~l~v   95 (96)
T cd05865          82 EDEGESEATVNVKI   95 (96)
T ss_pred             CCCCcEEEEEEEEE
Confidence            96 88888888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.54  E-value=2.5e-13  Score=91.72  Aligned_cols=81  Identities=25%  Similarity=0.431  Sum_probs=63.2

Q ss_pred             CeeEecCCceEec---CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCC-CCCCeEEEEEEE
Q psy1095          66 PRFYAVPHNKICD---LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVT-LEDAGLYTIKVE  141 (325)
Q Consensus        66 p~~~~~~~~~~v~---~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~  141 (325)
                      |.|+..|.++.+.   +|+.+.|.|.+.|.|.|.++|+|++..+...........+  ..|.|.++. ..|+|.|+|.+.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEE
Confidence            6777888876654   4789999999999999999999999988654333222222  358888874 699999999999


Q ss_pred             eCCeeEE
Q psy1095         142 NNYGSVE  148 (325)
Q Consensus       142 ~~~~~~~  148 (325)
                      |..|...
T Consensus        80 N~~G~~~   86 (94)
T cd05848          80 NSIGSIL   86 (94)
T ss_pred             cCCCeEE
Confidence            9998653

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.54  E-value=3.1e-13  Score=92.17  Aligned_cols=92  Identities=22%  Similarity=0.341  Sum_probs=67.1

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC---ceEEEecCCcceeEEEEEeCCCCCCCCe
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM---KPEVQVDSKENLVIARLKIPHVYPEDEG  241 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G  241 (325)
                      |.+...+....+..|+.+.|.|.+.|.|.  |.+.|++++..+......   .......    ...+.|.|.+++.+|+|
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~--P~v~W~~~~~~~~~~~~~~~~~~~v~~~----~~~~~L~I~~v~~~D~G   76 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASGDPI--PSITWRTSTRNISSEEKTLDGHIVVRSH----ARVSSLTLKYIQYTDAG   76 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeEeCC--CEEEEEECCccccCCccccCccEEEEcC----ccEEEEEEecCccCcCE
Confidence            44444444444556899999999999988  899999988766432211   1111111    13468999999999999


Q ss_pred             EEEEEEEeCCCcEEeEEEEEE
Q psy1095         242 EFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       242 ~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      .|+|.|.|..|....++.|.|
T Consensus        77 ~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          77 EYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEEecCCCCeeEEEEEEC
Confidence            999999999999988887764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.54  E-value=2e-13  Score=90.26  Aligned_cols=78  Identities=27%  Similarity=0.397  Sum_probs=62.8

Q ss_pred             CeEEEEEEEEecCCC--eeEEeeCCeeCCCC---CcEEE-EecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          81 DTVRFQCSVTGQPAP--WTSWSKDGKPATPN---ARVTI-REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        81 ~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      +++.|.|.+.|.|.|  .++|++++.++...   .++.. .......+|.|.+++..|+|.|+|.+.|..|...+.+.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999877  57999999887542   23322 2222346799999999999999999999999999999999


Q ss_pred             EECC
Q psy1095         155 IMDP  158 (325)
Q Consensus       155 v~~~  158 (325)
                      |..+
T Consensus        81 V~~~   84 (85)
T cd05854          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            8764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.54  E-value=1.1e-13  Score=90.10  Aligned_cols=75  Identities=28%  Similarity=0.453  Sum_probs=61.8

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      |+++.|.|.+.|.|.|.+.|++++..+....... ........|.|.+++.+|+|.|+|.+.|..|...+.+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            7899999999999999999999999886544321 11122356999999999999999999999998888888776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.53  E-value=1.1e-13  Score=86.33  Aligned_cols=65  Identities=22%  Similarity=0.403  Sum_probs=55.4

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|+  |.+.|+|+|..+....              ....|.|.++..+|+|.|+|.|+|..|....+..+.
T Consensus         1 ~~l~c~v~g~P~--P~v~W~kdg~~l~~~~--------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   64 (67)
T cd05863           1 VKLPVKVAAYPP--PEFQWYKDGKLISGKH--------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE   64 (67)
T ss_pred             CEEEEEEEEeCC--CEEEEEECCEECcccC--------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence            479999999999  8999999999885221              124899999999999999999999999887777776


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      +
T Consensus        65 l   65 (67)
T cd05863          65 L   65 (67)
T ss_pred             E
Confidence            6

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.53  E-value=1.5e-13  Score=87.81  Aligned_cols=71  Identities=30%  Similarity=0.563  Sum_probs=58.0

Q ss_pred             cEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095         181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL  260 (325)
Q Consensus       181 ~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  260 (325)
                      ++.|.|.+.|.|.  |.+.|++++..+........  ...+       .|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus         1 ~v~l~C~~~G~P~--p~v~W~k~g~~~~~~~~~~~--~~~~-------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   69 (71)
T cd05723           1 DVIFECEVTGKPT--PTVKWVKNGDMVIPSDYFKI--VKEH-------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQL   69 (71)
T ss_pred             CEEEEEEEEEeCC--CEEEEEECCeECCCCCCEEE--EecC-------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence            4789999999998  89999999988765443322  1222       58888999999999999999999999988887


Q ss_pred             EE
Q psy1095         261 IV  262 (325)
Q Consensus       261 ~v  262 (325)
                      .|
T Consensus        70 ~V   71 (71)
T cd05723          70 II   71 (71)
T ss_pred             EC
Confidence            64

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.53  E-value=4e-13  Score=93.34  Aligned_cols=95  Identities=21%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             CCCeeEecCCceEe----cCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEe--c--CCeEEEEEccCC-CCCC
Q psy1095          64 SSPRFYAVPHNKIC----DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIRE--K--EDLRFLEISEVT-LEDA  133 (325)
Q Consensus        64 ~~p~~~~~~~~~~v----~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~--~--~~~~~l~i~~~~-~~d~  133 (325)
                      .+|.|...|....+    ..|..+.|.|.+.|.|.+.++|++++..+... .++....  .  .....|.|.++. .+|.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence            46777666553222    25678999999999999999999999988643 3443221  1  113579999997 5999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095         134 GLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      |.|+|.+.|..|.....+.|.+...
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L~~~~~  107 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQLVSTSR  107 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEEEecCC
Confidence            9999999999999988899888765

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.52  E-value=3e-13  Score=91.01  Aligned_cols=84  Identities=24%  Similarity=0.474  Sum_probs=66.9

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.....+..... .+    ....|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~--p~i~W~k~~~~~~~~~~~~~~~~-~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~   81 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPD--PEVIWFKNDQDIELSEHYSVKLE-QG----KYASLTIKGVTSEDSGKYSINVKNKY   81 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCC--CeEEEEECCEECCCCCCEEEEEc-CC----CEEEEEECCCChhhCEEEEEEEEeCC
Confidence            3567889999999999999887  88999999988765544332211 11    12579999999999999999999999


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                      |.....+.|.|
T Consensus        82 G~~~~~~~v~~   92 (92)
T cd05891          82 GGETVDVTVSV   92 (92)
T ss_pred             CceeeEEEEEC
Confidence            99988877764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.52  E-value=1.4e-13  Score=89.93  Aligned_cols=78  Identities=22%  Similarity=0.379  Sum_probs=63.5

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      |.+..+.+|+.+.|.|.+.+. .+.+.|+|+|.++....++.+..    ..|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~----~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG----EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC----CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            456678899999999999885 56899999999998766665532    2699999999999999999999887765555


Q ss_pred             EEE
Q psy1095         152 RLE  154 (325)
Q Consensus       152 ~l~  154 (325)
                      .|.
T Consensus        76 ~v~   78 (79)
T cd04973          76 SVN   78 (79)
T ss_pred             EEe
Confidence            444

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.52  E-value=2.6e-13  Score=87.49  Aligned_cols=75  Identities=33%  Similarity=0.514  Sum_probs=58.2

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|.  |.+.|++++..+..... +......+   .....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 v~L~C~v~G~P~--P~v~W~k~~~~i~~~~~-r~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPP--PQIFWKKNNEMLTYNTD-RISLYQDN---CGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CEEEEEEeecCC--CeEEEEECCEECCCCCC-cEEEEEcC---CCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            479999999998  89999999998864322 11111111   0234799999999999999999999999999888876


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      |
T Consensus        75 v   75 (75)
T cd05744          75 V   75 (75)
T ss_pred             C
Confidence            4

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.52  E-value=2.9e-13  Score=90.66  Aligned_cols=86  Identities=24%  Similarity=0.421  Sum_probs=66.8

Q ss_pred             CeeE--ecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          66 PRFY--AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        66 p~~~--~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      |.|.  ..+.++.+.+|++++|.|.+.|. .|.+.|++++..+... +..+.  ....+|.|.+++.+|+|.|.|.+.|.
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNE   77 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcC
Confidence            5553  33456789999999999999999 9999999999887643 34333  23347999999999999999999999


Q ss_pred             CeeE-EEEEEEEE
Q psy1095         144 YGSV-EATARLEI  155 (325)
Q Consensus       144 ~~~~-~~~~~l~v  155 (325)
                      .|.. ...+.|.|
T Consensus        78 ~G~~~S~~~~L~V   90 (91)
T cd05740          78 VSNMTSDPYILNV   90 (91)
T ss_pred             CCCEEeeeEEEEe
Confidence            9864 34555554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.52  E-value=2.4e-13  Score=87.78  Aligned_cols=74  Identities=23%  Similarity=0.390  Sum_probs=60.0

Q ss_pred             cEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095         181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL  260 (325)
Q Consensus       181 ~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  260 (325)
                      .+.|.|.+.|.|.  |.+.|++++..+..+.+....  ...    ..+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         1 ~~~l~c~~~G~P~--p~v~W~k~g~~l~~~~~~~~~--~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05748           1 SVRLEVPISGRPT--PTVTWSKDGKPLKLSGRVQIE--TTA----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV   72 (74)
T ss_pred             CEEEEeeEeeeCC--CeEEEEECCEEcCCCCeEEEE--ECC----CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence            3789999999999  899999999988554433222  222    34789999999999999999999999998888777


Q ss_pred             EE
Q psy1095         261 IV  262 (325)
Q Consensus       261 ~v  262 (325)
                      .|
T Consensus        73 ~V   74 (74)
T cd05748          73 KV   74 (74)
T ss_pred             EC
Confidence            64

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.51  E-value=2.2e-13  Score=86.82  Aligned_cols=70  Identities=31%  Similarity=0.494  Sum_probs=58.2

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      +.|.|.+.|.|.|.+.|+|++.++....++.    .....|.|.+++.+|+|.|+|.+.|..|.....+.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4799999999999999999999987664432    223579999999999999999999999887777766653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.51  E-value=3e-13  Score=87.97  Aligned_cols=75  Identities=24%  Similarity=0.437  Sum_probs=61.5

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.+.|.|.+.|.|.  +.+.|++++..+......... ...      ...|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 G~~~~l~C~~~g~P~--p~i~W~~~g~~~~~~~~~~~~-~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~   71 (76)
T cd04978           1 GETGRLDCEAEGIPQ--PTITWRLNGVPIEELPPDPRR-RVD------GGTLILSNVQPNDTAVYQCNASNVHGYLLANA   71 (76)
T ss_pred             CCeEEEEEEceeeCC--CEEEEEECCEECCCCCCcceE-Ecc------CCEEEECCCChhhCEEEEEEEEccCCeEEEeE
Confidence            678999999999998  899999999888654432111 111      25899999999999999999999999999888


Q ss_pred             EEEE
Q psy1095         259 CLIV  262 (325)
Q Consensus       259 ~l~v  262 (325)
                      .|.|
T Consensus        72 ~l~V   75 (76)
T cd04978          72 FVHV   75 (76)
T ss_pred             EEEE
Confidence            8876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.51  E-value=2e-13  Score=87.87  Aligned_cols=73  Identities=32%  Similarity=0.535  Sum_probs=60.6

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.+.|.|.+.+.|.  +.+.|++++..+....+...  ...       ..|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         1 G~~v~L~C~~~g~P~--p~v~W~k~~~~~~~~~~~~~--~~~-------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   69 (73)
T cd04969           1 GGDVIIECKPKAAPK--PTISWSKGTELLTNSSRICI--WPD-------GSLEILNVTKSDEGKYTCFAENFFGKANSTG   69 (73)
T ss_pred             CCeEEEEEeeeEcCC--CEEEEEECCEEcccCCCEEE--CCC-------CeEEEccCChhHCEEEEEEEECCCCceEEEE
Confidence            678999999999988  89999999988765443321  122       3799999999999999999999999999888


Q ss_pred             EEEE
Q psy1095         259 CLIV  262 (325)
Q Consensus       259 ~l~v  262 (325)
                      .|.|
T Consensus        70 ~l~V   73 (73)
T cd04969          70 SLSV   73 (73)
T ss_pred             EEEC
Confidence            8764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.50  E-value=3.9e-13  Score=89.45  Aligned_cols=82  Identities=26%  Similarity=0.438  Sum_probs=64.5

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ..+.+|+.+.|.|.+.|.|.  +.+.|++++..+.......... ...    ....|.|.++..+|+|.|+|.|.|..|.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~--p~i~W~k~g~~l~~~~~~~~~~-~~~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~   76 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPT--PTMRWLKNGKEFKQEHRIGGYK-VRN----QHWSLIMESVVPSDKGNYTCVVENEYGS   76 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCC--CEEEEEECCEECCCCCceeeeE-EeC----CceEEEEccCCcccCEEEEEEEEeCCCE
Confidence            34678999999999999887  8999999999886544321111 111    2357999999999999999999999999


Q ss_pred             EEeEEEEEE
Q psy1095         254 VVTSACLIV  262 (325)
Q Consensus       254 ~~~~~~l~v  262 (325)
                      ....+.|.|
T Consensus        77 ~~~~~~l~v   85 (85)
T cd05857          77 INHTYHLDV   85 (85)
T ss_pred             EEEEEEEEC
Confidence            988887764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.50  E-value=1.4e-13  Score=87.42  Aligned_cols=68  Identities=31%  Similarity=0.600  Sum_probs=58.0

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL  153 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  153 (325)
                      |.|.|.+.|.|.|.++|+|++..+....++.+...   ..|.|.+++.+|+|.|+|.+.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            57999999999999999999998877666655432   369999999999999999999999987776655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.50  E-value=7.3e-13  Score=87.59  Aligned_cols=81  Identities=23%  Similarity=0.409  Sum_probs=62.3

Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeCCEEeccCC-CCce-EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDS-DMKP-EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      +.+.|.|.+.|.|.+.+.+.|++++..+.... .... ......    ..+.|.|.+++..|+|.|+|.|.|..|....+
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~   76 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKE----TIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS   76 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecc----eEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence            46899999999998545799999998875432 1111 111111    23689999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy1095         258 ACLIVDV  264 (325)
Q Consensus       258 ~~l~v~~  264 (325)
                      +.|.|..
T Consensus        77 ~~L~V~~   83 (85)
T cd05854          77 ATLVVRG   83 (85)
T ss_pred             EEEEEEC
Confidence            9998853

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.50  E-value=1.1e-12  Score=88.60  Aligned_cols=79  Identities=25%  Similarity=0.393  Sum_probs=62.3

Q ss_pred             CeeEecCCceEecCC---CeEEEEEEEEecCCCeeEEeeCCeeCCCCC--cEEEEecCCeEEEEEccCC-CCCCeEEEEE
Q psy1095          66 PRFYAVPHNKICDLG---DTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFLEISEVT-LEDAGLYTIK  139 (325)
Q Consensus        66 p~~~~~~~~~~v~~g---~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~  139 (325)
                      |.|...|....+.+|   +++.|.|.+.|.|.|.++|++++..+....  ++.+.  +  ..|.|.++. ..|+|.|+|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~--g~L~I~~~~~~~D~G~Y~C~   77 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--A--GNLVINNPQKARDAGSYQCL   77 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--C--CeEEEccCCccCcCEEEEEE
Confidence            677788888877665   589999999999999999999999886432  33332  2  358888765 5999999999


Q ss_pred             EEeCCeeEE
Q psy1095         140 VENNYGSVE  148 (325)
Q Consensus       140 ~~~~~~~~~  148 (325)
                      +.|..|...
T Consensus        78 A~N~~G~~~   86 (94)
T cd05850          78 AINRCGTVV   86 (94)
T ss_pred             EEcCcCcEE
Confidence            999998654

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.49  E-value=2.2e-13  Score=86.08  Aligned_cols=68  Identities=29%  Similarity=0.407  Sum_probs=55.4

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      +.|.|.+.|.|.|.++|+|++.++....++.     ....|.|.++..+|+|.|+|.+.|..|..+....+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEc-----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            4689999999999999999999987643321     1246999999999999999999999987666555554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.49  E-value=4.8e-13  Score=87.31  Aligned_cols=71  Identities=21%  Similarity=0.347  Sum_probs=57.1

Q ss_pred             EEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEe-------cCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          84 RFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE-------KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        84 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      .|.|.+.|.|.|.++|+|+|.++..........       ......|.|.+++..|+|.|+|.+.|..|.....+.+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            378999999999999999999997665433221       12245799999999999999999999999887776654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.49  E-value=7.9e-13  Score=88.96  Aligned_cols=86  Identities=27%  Similarity=0.479  Sum_probs=66.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEee-CCeeCCCCCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +.+.|....+..|+++.|.|.+.|.|. .+.|++ ++..+....+..... .....+|+|.+++.+|+|.|+|.+.|..|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            456777888999999999999999874 899997 566555444444333 33456899999999999999999999854


Q ss_pred             -eEEEEEEEE
Q psy1095         146 -SVEATARLE  154 (325)
Q Consensus       146 -~~~~~~~l~  154 (325)
                       ...+++.|.
T Consensus        82 ~~~~~sv~l~   91 (92)
T cd04977          82 TESEATVNLK   91 (92)
T ss_pred             CcceeEEEEE
Confidence             445666654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.49  E-value=8.3e-13  Score=90.10  Aligned_cols=88  Identities=24%  Similarity=0.424  Sum_probs=65.3

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC-ceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM-KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      .....+.+|+.+.|.|.+.|.|.  +.+.|++++..+...... ........  ....+.|.|.+++.+|+|.|.|.|.|
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p~--p~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N   83 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDPI--PEITWRRATRNFSEGDKSLDGRIVVRG--HARVSSLTLKDVQLTDAGRYDCEASN   83 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcCC--CcEEEEECCcccCCCCccccceEEEeC--CccEEEEEECcCCcCcCEEeEEEEEe
Confidence            34567889999999999999988  899999988655432110 00111111  11346899999999999999999999


Q ss_pred             CCCcEEeEEEEEE
Q psy1095         250 ELGEVVTSACLIV  262 (325)
Q Consensus       250 ~~~~~~~~~~l~v  262 (325)
                      ..|....++.|.|
T Consensus        84 ~~G~~~~s~~l~v   96 (96)
T cd05732          84 RIGGDQQSMYLEV   96 (96)
T ss_pred             CCCCcEEEEEEeC
Confidence            9999888777754

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.49  E-value=1.4e-12  Score=89.10  Aligned_cols=88  Identities=20%  Similarity=0.309  Sum_probs=65.5

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCC-eeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCC-CCCeEEEEEEE
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP-EDEGEFTCRVA  248 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~  248 (325)
                      .....+..|+.+.|.|.+.|.|.  + .+.|++++..+......+.............+.|.|.++.. +|.|.|.|.|.
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~--P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~   85 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPP--PDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAW   85 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCC--CCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEE
Confidence            34566889999999999999988  6 69999999888654322222222211122346899999999 45899999999


Q ss_pred             eCCCcEEeEEEE
Q psy1095         249 NELGEVVTSACL  260 (325)
Q Consensus       249 ~~~~~~~~~~~l  260 (325)
                      |..|.....+.|
T Consensus        86 N~~G~~~~~~~L   97 (98)
T cd05758          86 NSFGSGTAIISL   97 (98)
T ss_pred             cCCCcccEEEEe
Confidence            999998877665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.49  E-value=4.9e-13  Score=86.08  Aligned_cols=70  Identities=23%  Similarity=0.419  Sum_probs=56.5

Q ss_pred             EEEEEEecCCCeeEEeeCCeeCCCCCcEEEE--e---cCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          85 FQCSVTGQPAPWTSWSKDGKPATPNARVTIR--E---KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        85 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      |.|.+.|.|.|.++|||++.++....+....  .   ......|.|.++...|+|.|+|.|.|..|...+.+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            7899999999999999999999766543221  1   12345799999999999999999999999877766554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.49  E-value=4.4e-13  Score=87.62  Aligned_cols=78  Identities=21%  Similarity=0.306  Sum_probs=62.4

Q ss_pred             CeEEEEEEEEec--CCCeeEEeeCCeeCCC---CCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          81 DTVRFQCSVTGQ--PAPWTSWSKDGKPATP---NARVTIREK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        81 ~~v~l~C~~~~~--p~~~v~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      +++.|.|.+.+.  +.+.+.|+++|+++..   ..++..... .....|.|.+++..|+|.|+|.+.|..+...++..|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            468999999774  4778999999999952   224443221 2234699999999999999999999999999999999


Q ss_pred             EECC
Q psy1095         155 IMDP  158 (325)
Q Consensus       155 v~~~  158 (325)
                      |..+
T Consensus        81 V~~p   84 (85)
T cd05853          81 VRGP   84 (85)
T ss_pred             EecC
Confidence            9875

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.49  E-value=7.1e-13  Score=89.15  Aligned_cols=81  Identities=28%  Similarity=0.443  Sum_probs=63.0

Q ss_pred             CCeeEecCCceEecCCC---eEEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEecCCeEEEEEccCC-CCCCeEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGD---TVRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKEDLRFLEISEVT-LEDAGLYTIK  139 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~---~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~  139 (325)
                      .|.|...|....+.++.   .+.|.|.+.|.|.|.++|+|++..+.. ..++.+.  +  ..|.|.++. ..|+|.|+|.
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~--g~L~I~~~~~~~D~G~Y~C~   76 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--G--GNLVINNPDKYKDAGRYVCI   76 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--C--CEEEECcCCcCCCCEEEEEE
Confidence            47788888877665544   799999999999999999999988853 3344332  2  359998885 6899999999


Q ss_pred             EEeCCeeEEE
Q psy1095         140 VENNYGSVEA  149 (325)
Q Consensus       140 ~~~~~~~~~~  149 (325)
                      +.|..|....
T Consensus        77 A~N~~G~~~s   86 (93)
T cd05849          77 VSNIYGKVRS   86 (93)
T ss_pred             EEeCcceEEE
Confidence            9999886543

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.48  E-value=5.9e-13  Score=86.76  Aligned_cols=76  Identities=26%  Similarity=0.386  Sum_probs=60.8

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.+.|.|.+.|.|.  |.+.|++++..+....+....  ..+    ....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus         1 G~~v~l~C~~~g~P~--p~v~W~~~~~~~~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   72 (78)
T cd05743           1 GETVEFTCVATGVPT--PIINWRLNWGHVPDSARVSIT--SEG----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP   72 (78)
T ss_pred             CCEEEEEEEEEEecC--CEEEEEECCeECCCCCCEEEE--ECC----CEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence            678999999999998  899999998877654432222  222    346899999999999999999999999888776


Q ss_pred             EEEE
Q psy1095         259 CLIV  262 (325)
Q Consensus       259 ~l~v  262 (325)
                      .+.+
T Consensus        73 ~~~~   76 (78)
T cd05743          73 DGIL   76 (78)
T ss_pred             cEEE
Confidence            6654

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.48  E-value=1e-12  Score=89.80  Aligned_cols=91  Identities=24%  Similarity=0.429  Sum_probs=65.5

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEeccCC---CCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIKLDS---DMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      |.+.. +....+.+|+.+.|.|.+.|.|.  +.+.|+++  +..+....   ..+.......    ....|.|.+++.+|
T Consensus         3 p~i~~-~~~~~~~~G~~v~l~C~~~G~P~--p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~----~~~~L~I~~v~~~D   75 (98)
T cd05870           3 PHIIQ-LKNETTVENGAATLSCKAEGEPI--PEITWKRASDGHTFSEGDKSPDGRIEVKGQH----GESSLHIKDVKLSD   75 (98)
T ss_pred             CEEEe-eccEEEcCCCcEEEEEecccCCC--CeEEEEECCCCceeccCCcCcCceEEEeecC----CeeEEEEeeCCcCC
Confidence            44433 45678889999999999999998  89999994  33332211   1111111111    23589999999999


Q ss_pred             CeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         240 EGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      +|.|.|.|.|..|....++.|.|
T Consensus        76 ~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          76 SGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             CEEEEEEEeccCCcceeEEEEeC
Confidence            99999999999999888777753

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.48  E-value=3.5e-13  Score=86.02  Aligned_cols=70  Identities=24%  Similarity=0.467  Sum_probs=57.2

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      +.|.|.+.|.|.|.+.|++++..+.... ....  .....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4799999999999999999988775432 2222  23357999999999999999999999998888877765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.48  E-value=8e-13  Score=85.80  Aligned_cols=72  Identities=29%  Similarity=0.586  Sum_probs=56.4

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCC-cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE--EEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE--ATARLEIM  156 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~  156 (325)
                      |+|.|.+.|.|.|.++|+|++.++.... ++.+..  ....|.|.+++.+|+|.|.|.+.|..|...  ..+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            5799999999999999999999886543 333322  234799999999999999999999998764  34555553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.48  E-value=1.2e-12  Score=89.37  Aligned_cols=88  Identities=24%  Similarity=0.333  Sum_probs=69.1

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCC--CcEEEEec----CCeEEEEEccCCC-CCCeEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPN--ARVTIREK----EDLRFLEISEVTL-EDAGLY  136 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~-~d~G~Y  136 (325)
                      ||.+. .+....+.+|+++.|.|.+.|.|.| .+.|++++..+...  .++.+...    ....+|.|.++.. +|.|.|
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            56664 4566778999999999999999998 69999999888643  45555432    2235799999999 558999


Q ss_pred             EEEEEeCCeeEEEEEEE
Q psy1095         137 TIKVENNYGSVEATARL  153 (325)
Q Consensus       137 ~C~~~~~~~~~~~~~~l  153 (325)
                      .|.+.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999987766554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.48  E-value=6.7e-13  Score=83.90  Aligned_cols=68  Identities=28%  Similarity=0.600  Sum_probs=54.8

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL  153 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  153 (325)
                      |+++.|.|.+.|.|.|.|+|+|++.++....+...    ....|.|.++.  |+|.|+|.+.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            68899999999999999999999998865544322    12358888874  7999999999999987776654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.47  E-value=6.2e-13  Score=86.91  Aligned_cols=83  Identities=24%  Similarity=0.350  Sum_probs=62.0

Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC  259 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  259 (325)
                      +.+.|.|.+.+.+...+.+.|+++|..+.............+.  ...+.|.|.+++..|+|.|+|.|.|..++...++.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~--~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQ--DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccC--CCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence            4689999998866444899999999999643221111111100  01248999999999999999999999999999999


Q ss_pred             EEEEe
Q psy1095         260 LIVDV  264 (325)
Q Consensus       260 l~v~~  264 (325)
                      |.|..
T Consensus        79 L~V~~   83 (85)
T cd05853          79 LIVRG   83 (85)
T ss_pred             EEEec
Confidence            99853

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.47  E-value=8.6e-13  Score=87.64  Aligned_cols=78  Identities=26%  Similarity=0.419  Sum_probs=61.7

Q ss_pred             CeEEEEEEEEecCCC--eeEEeeCCeeCCCCC---cEE-EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          81 DTVRFQCSVTGQPAP--WTSWSKDGKPATPNA---RVT-IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        81 ~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      +++.|.|.+.+.|.|  .+.|++++..+....   ++. .........|.|.+++..|+|.|+|.+.|..+...+.+.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999877  669999999875332   221 11222345799999999999999999999999888899999


Q ss_pred             EECC
Q psy1095         155 IMDP  158 (325)
Q Consensus       155 v~~~  158 (325)
                      |..+
T Consensus        81 V~~p   84 (85)
T cd04970          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            8765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.47  E-value=1.2e-12  Score=84.36  Aligned_cols=76  Identities=16%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             EEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       183 ~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      .|.|.+.|+|.  |+++|+++|..+..+..........+ .....+.|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus         2 ~i~~~v~G~P~--Pti~W~kng~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPK--PTLQWFHEGAILNESEYICTKIHVIN-NTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCC--CceEEEECCEECCCCcceeeeeEeec-ccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            47899999999  99999999999976554322111111 111346899999999999999999999999988777664

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.47  E-value=3.7e-13  Score=85.02  Aligned_cols=68  Identities=22%  Similarity=0.390  Sum_probs=55.4

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|.  |.+.|+|++.++.....  .   ..      ...|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus         1 ~~~~c~v~G~P~--P~v~W~k~g~~l~~~~~--~---~~------~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~   67 (70)
T cd05864           1 VKIPVKYYGYPP--PEVKWYKNGQLIVLNHT--F---KR------GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ   67 (70)
T ss_pred             CEEEeEEEEeCC--CEEEEEECCEECCCCCE--E---cc------CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence            368999999999  89999999998865321  1   11      24799999999999999999999999877766665


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      +
T Consensus        68 l   68 (70)
T cd05864          68 L   68 (70)
T ss_pred             E
Confidence            5

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.46  E-value=1e-12  Score=85.27  Aligned_cols=72  Identities=24%  Similarity=0.456  Sum_probs=55.1

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      ++|.|.+.|.|.  |.+.|+|+|..+...... ......      ...|.|.++..+|+|.|.|.|.|..|....+..+.
T Consensus         1 v~L~C~~~g~P~--p~v~W~k~g~~l~~~~~~-~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~   71 (77)
T cd05760           1 VTLRCHIDGHPR--PTYQWFRDGTPLSDGQGN-YSVSSK------ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT   71 (77)
T ss_pred             CEEEEEeeecCC--CcEEEEECCEECCCCCcc-EEEeCC------CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence            579999999998  899999999987654321 111111      24899999999999999999999999876554444


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      +
T Consensus        72 l   72 (77)
T cd05760          72 L   72 (77)
T ss_pred             E
Confidence            4

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.46  E-value=9.9e-13  Score=86.93  Aligned_cols=77  Identities=32%  Similarity=0.602  Sum_probs=62.2

Q ss_pred             EecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      ....|+++.|.|.+.+.|.|.+.|++++..+.......  .......|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            35679999999999999999999999998875543322  223346799999999999999999999999877766654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.46  E-value=2.5e-12  Score=89.35  Aligned_cols=86  Identities=24%  Similarity=0.341  Sum_probs=64.2

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCCeEEEEEEEeCCCcEEe
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~  256 (325)
                      .|..+.|.|.+.|.|+  +.+.|++++..+..... ..............+.|.|.++. .+|.|.|+|.|.|..|....
T Consensus        22 ~g~~v~L~C~a~G~P~--p~i~W~k~g~~l~~~~~-r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~   98 (109)
T cd05773          22 GSSDANLVCQAQGVPR--VQFRWAKNGVPLDLGNP-RYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSL   98 (109)
T ss_pred             CCCEEEEEEECcccCC--CEEEEEECCEECCCCCC-eEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcE
Confidence            4678999999999988  89999999988864321 11111111111124689999997 58999999999999999999


Q ss_pred             EEEEEEEeeC
Q psy1095         257 SACLIVDVVK  266 (325)
Q Consensus       257 ~~~l~v~~~~  266 (325)
                      .+.|.+...+
T Consensus        99 ~i~L~~~~~p  108 (109)
T cd05773          99 DIQLVSTSRP  108 (109)
T ss_pred             EEEEEecCCC
Confidence            9998885443

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=8.4e-13  Score=88.68  Aligned_cols=76  Identities=36%  Similarity=0.599  Sum_probs=62.0

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeC--------CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPA--------TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      |+++.|.|.+.+.|.|.+.|++++..+        ....++.+...   ..|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            789999999999999999999987643        12334444322   3599999999999999999999999988889


Q ss_pred             EEEEECC
Q psy1095         152 RLEIMDP  158 (325)
Q Consensus       152 ~l~v~~~  158 (325)
                      .|.|...
T Consensus        78 ~l~V~~~   84 (90)
T cd05726          78 YLEVTDV   84 (90)
T ss_pred             EEEEeec
Confidence            9998764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.46  E-value=1.1e-12  Score=85.48  Aligned_cols=72  Identities=15%  Similarity=0.349  Sum_probs=58.0

Q ss_pred             EecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      ...|.+..+.+|+++.|.|.+.|.|.| .|.|+|++.++...  .    ......|.|..+  .|+|.|.|.+.|..|..
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~   73 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL--NETSKFSCEAHNAKGVT   73 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence            456778889999999999999999999 79999999988641  1    112246888876  47899999999999855


Q ss_pred             E
Q psy1095         148 E  148 (325)
Q Consensus       148 ~  148 (325)
                      .
T Consensus        74 ~   74 (81)
T cd05749          74 T   74 (81)
T ss_pred             E
Confidence            4

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.45  E-value=1.2e-12  Score=88.88  Aligned_cols=84  Identities=31%  Similarity=0.504  Sum_probs=63.4

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCc--EEEEecCCeEEEEEccC-----CCCCCeEEEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR--VTIREKEDLRFLEISEV-----TLEDAGLYTIKV  140 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~~  140 (325)
                      |...|....+.+|+++.|.|.+.+.|.|.++|+|++..+.....  ......   ..+.|.++     ...|.|.|+|.+
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a   78 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVA   78 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccC---CeEEEeeeeccCCCCCcCEEEEEEE
Confidence            45677888889999999999999999999999999998865432  332222   23555555     689999999999


Q ss_pred             EeC-CeeE-EEEEEEE
Q psy1095         141 ENN-YGSV-EATARLE  154 (325)
Q Consensus       141 ~~~-~~~~-~~~~~l~  154 (325)
                      .|. .|.. ...+.|.
T Consensus        79 ~N~~~G~~~s~~~~l~   94 (95)
T cd05722          79 QNDSLGSIVSRTARLT   94 (95)
T ss_pred             ECCccCcEEEeeeEEe
Confidence            999 8765 3444443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.45  E-value=5e-13  Score=84.86  Aligned_cols=68  Identities=24%  Similarity=0.417  Sum_probs=55.6

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL  260 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  260 (325)
                      |.|.|.+.|.|.  +.+.|++++..+.........  ..       ..|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~--p~i~W~k~g~~~~~~~~~~~~--~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPE--PTITWNKDGVQVTESGKFHIS--PE-------GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCC--CEEEEEECCEECCCCCCEEEC--CC-------CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            579999999998  899999999887654332211  22       489999999999999999999999998877765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.45  E-value=4.2e-13  Score=85.70  Aligned_cols=70  Identities=20%  Similarity=0.433  Sum_probs=56.4

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|.  |.+.|++++..+.....   .....      ...|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 ~~L~C~~~G~P~--P~v~W~k~~~~~~~~~~---~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   69 (71)
T cd05876           1 LVLECIAEGLPT--PEVHWDRIDGPLSPNRT---KKLNN------NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT   69 (71)
T ss_pred             CEEEEEeeEecC--CeEEEEECCcCCCCCce---eEEcC------CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence            479999999999  89999999876653321   11111      25899999999999999999999999998888877


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      |
T Consensus        70 V   70 (71)
T cd05876          70 V   70 (71)
T ss_pred             E
Confidence            6

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.45  E-value=1.1e-12  Score=87.59  Aligned_cols=75  Identities=33%  Similarity=0.554  Sum_probs=61.5

Q ss_pred             cCCceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE
Q psy1095          71 VPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE  148 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  148 (325)
                      .|....+.+|+++.|.|.+ .+.|.|.+.|++++..+... .++....   ...|.|.+++.+|+|.|+|.+.|..|...
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            4667788999999999998 68899999999999988763 3444332   24699999999999999999999888643

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.45  E-value=2.2e-12  Score=88.78  Aligned_cols=92  Identities=27%  Similarity=0.489  Sum_probs=65.5

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCC---CCceEEEecCCcceeEEEEEe--CCCCCCC
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDS---DMKPEVQVDSKENLVIARLKI--PHVYPED  239 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i--~~~~~~d  239 (325)
                      |.+...+....+.+|+.+.|.|.+.|.|.  +.+.|++++..+....   .........+    ....+.+  ..++.+|
T Consensus         2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~D   75 (100)
T cd07693           2 PRIVEHPSDLIVSKGDPATLNCKAEGRPT--PTIQWLKNGQPLETDKDDPRSHRIVLPSG----SLFFLRVVHGRKGRSD   75 (100)
T ss_pred             CeEEecCceeEEcCCCeEEEEeeCCcCCC--CEEEEEECCEECccccCCCCcceEEecCC----cEEEEEeeccCCCcCc
Confidence            56667777788999999999999999988  8999999998886521   1111111222    1122223  3447899


Q ss_pred             CeEEEEEEEeCCCc-EEeEEEEEE
Q psy1095         240 EGEFTCRVANELGE-VVTSACLIV  262 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~-~~~~~~l~v  262 (325)
                      +|.|+|.|.|..|. ....+.|.|
T Consensus        76 ~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          76 EGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CEEEEEEEEccccceecceEEEEe
Confidence            99999999999998 566666655

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.45  E-value=2.1e-12  Score=84.28  Aligned_cols=77  Identities=16%  Similarity=0.285  Sum_probs=58.6

Q ss_pred             EEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       183 ~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      .|.|.+.|.|.  |.++|+|+|..+..+........... ......+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         2 ~i~~~v~G~P~--P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPK--PTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCC--CcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            47899999999  89999999999876553322211110 0112346899999999999999999999999998877765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.45  E-value=1.4e-12  Score=84.69  Aligned_cols=74  Identities=30%  Similarity=0.451  Sum_probs=60.1

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      +.|.|.+.|.|.|.+.|+|++..+.......+........|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            36899999999999999999998865543333222333579999999999999999999999988888888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.45  E-value=4.4e-13  Score=90.19  Aligned_cols=80  Identities=23%  Similarity=0.340  Sum_probs=62.1

Q ss_pred             ceEecCCCeEEEEEEEEe-----cCCCeeEEeeCCeeCCCC--CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          74 NKICDLGDTVRFQCSVTG-----QPAPWTSWSKDGKPATPN--ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|||++..+...  ...++...  ...|.|.+++.+|+|.|+|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            455779999999999988     688899999998764321  12222222  246999999999999999999999998


Q ss_pred             EEEEEEEEE
Q psy1095         147 VEATARLEI  155 (325)
Q Consensus       147 ~~~~~~l~v  155 (325)
                      ....+.|.|
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            877777654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.45  E-value=2.7e-12  Score=86.65  Aligned_cols=82  Identities=23%  Similarity=0.480  Sum_probs=60.2

Q ss_pred             CeeeecCcCeeEe---cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCC
Q psy1095         165 PKVLNGLENLRCC---DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDE  240 (325)
Q Consensus       165 p~~~~~~~~~~v~---~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~  240 (325)
                      |.|...+.+..+.   .|+.+.|.|.+.|.|.  +.+.|++++..+......... ..+       ..|.|.++. .+|+
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~--P~i~W~k~g~~l~~~~~~~~~-~~~-------g~L~i~~~~~~~D~   71 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPV--PTYRWLRNGTEIDTESDYRYS-LID-------GNLIISNPSEVKDS   71 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCC--CEEEEEECCeECccCCCceEE-eeC-------CeEEEccCCccCcC
Confidence            3444455454443   4789999999999998  899999999988644332221 122       378898875 6999


Q ss_pred             eEEEEEEEeCCCcEEe
Q psy1095         241 GEFTCRVANELGEVVT  256 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~  256 (325)
                      |.|.|.|.|..|...+
T Consensus        72 G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          72 GRYQCLATNSIGSILS   87 (94)
T ss_pred             EEEEEEEEcCCCeEEe
Confidence            9999999999997754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.44  E-value=8e-13  Score=85.53  Aligned_cols=71  Identities=34%  Similarity=0.693  Sum_probs=55.8

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCC---CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATP---NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      +.|.|.+.|.|.|.++|+|++.....   ..++.+..  ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP--EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEec--CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            46899999999999999998864322   22333322  2246999999999999999999999998888888776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.44  E-value=4.5e-12  Score=85.65  Aligned_cols=82  Identities=27%  Similarity=0.470  Sum_probs=60.4

Q ss_pred             CeeeecCcCeeEecC---CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCC
Q psy1095         165 PKVLNGLENLRCCDG---DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDE  240 (325)
Q Consensus       165 p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~  240 (325)
                      |.|...+....+.+|   +.+.|.|.+.|.|.  +.+.|++++..+......... ...       ..|.|.++. ..|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~--p~i~W~~~g~~l~~~~~~~~~-~~~-------g~L~I~~~~~~~D~   71 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPP--ATYRWKMNGTEIKFAPESRYT-LVA-------GNLVINNPQKARDA   71 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCC--CEEEEEECCEECccCCCceEE-EEC-------CeEEEccCCccCcC
Confidence            445555555555444   57999999999998  899999999988644332222 122       378888765 5999


Q ss_pred             eEEEEEEEeCCCcEEe
Q psy1095         241 GEFTCRVANELGEVVT  256 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~  256 (325)
                      |.|.|.|.|..|...+
T Consensus        72 G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          72 GSYQCLAINRCGTVVS   87 (94)
T ss_pred             EEEEEEEEcCcCcEEE
Confidence            9999999999997754

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.44  E-value=1.2e-12  Score=84.48  Aligned_cols=73  Identities=30%  Similarity=0.548  Sum_probs=59.0

Q ss_pred             CCeEEEEEEEEecCCCeeEEee-CCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+......   ..|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN---GTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC---CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7889999999999999999997 5666655544443332   36999999999999999999999998877776654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.44  E-value=1.6e-12  Score=82.89  Aligned_cols=69  Identities=25%  Similarity=0.483  Sum_probs=56.7

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|+  +.+.|+|++..+..+...    ...      ...|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus         1 ~~l~c~v~g~P~--p~v~W~k~g~~l~~~~~~----~~~------~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   68 (71)
T cd04976           1 VRLPVKVKAYPP--PEIQWYKNGKLISEKNRT----KKS------GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT   68 (71)
T ss_pred             CEEEeEEEEeCC--CEEEEEECCEECCCCCEE----EcC------CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence            469999999998  899999999988655221    122      25899999999999999999999999888777776


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      +
T Consensus        69 ~   69 (71)
T cd04976          69 L   69 (71)
T ss_pred             E
Confidence            5

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.44  E-value=2.5e-12  Score=86.11  Aligned_cols=78  Identities=24%  Similarity=0.400  Sum_probs=61.0

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+.+|+.+.|.|.+.|. .  +.+.|++++..+....   ......+      ..|.|.+++.+|+|.|.|.|.|..|
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~--p~i~W~kng~~l~~~~---~~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-A--TYIWWVNNGSLLVPPR---LQLSNDN------RTLTFNNVTRSDTGHYQCEASNEVS   79 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-C--CEEEEEECCEECCCCC---EEEeCCC------CEEEECcCChhhCEEEEEEEEcCCC
Confidence            4578899999999999998 6  8999999998875332   1111222      4799999999999999999999999


Q ss_pred             cEEe-EEEEEE
Q psy1095         253 EVVT-SACLIV  262 (325)
Q Consensus       253 ~~~~-~~~l~v  262 (325)
                      ...+ .+.|.|
T Consensus        80 ~~~S~~~~L~V   90 (91)
T cd05740          80 NMTSDPYILNV   90 (91)
T ss_pred             CEEeeeEEEEe
Confidence            7654 555554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.43  E-value=8.6e-13  Score=83.87  Aligned_cols=69  Identities=39%  Similarity=0.634  Sum_probs=56.3

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      ++|.|.+.|.|.|.+.|+|++..+.. .++....   ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC-CcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            57999999999999999999877654 3444432   236999999999999999999999998877777654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.43  E-value=2.4e-12  Score=87.47  Aligned_cols=83  Identities=28%  Similarity=0.507  Sum_probs=60.5

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCC-----CCCCCeEEE
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV-----YPEDEGEFT  244 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~  244 (325)
                      .+....+.+|+++.|.|.+.+.|+  +.+.|+|++..+............++       .|.|.++     ...|.|.|.
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~--p~i~W~k~g~~l~~~~~~~~~~~~~~-------~l~i~~v~~~~~~~~D~G~Y~   75 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPP--PKIEWKKDGVLLNLVSDERRQQLPNG-------SLLITSVVHSKHNKPDEGFYQ   75 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCC--CEEEEEECCeECccccCcceEEccCC-------eEEEeeeeccCCCCCcCEEEE
Confidence            345667778999999999999987  89999999998865443222222222       4555554     689999999


Q ss_pred             EEEEeC-CCcE-EeEEEEE
Q psy1095         245 CRVANE-LGEV-VTSACLI  261 (325)
Q Consensus       245 C~~~~~-~~~~-~~~~~l~  261 (325)
                      |.|.|. .|.. +..+.|.
T Consensus        76 C~a~N~~~G~~~s~~~~l~   94 (95)
T cd05722          76 CVAQNDSLGSIVSRTARLT   94 (95)
T ss_pred             EEEECCccCcEEEeeeEEe
Confidence            999999 8876 4455554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.43  E-value=1.1e-12  Score=85.62  Aligned_cols=77  Identities=17%  Similarity=0.397  Sum_probs=60.9

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+.+|+.+.|.|.+.+. .  +.+.|+|+|.++....+..    ..+      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~--~~v~W~k~g~~l~~~~~~~----~~~------~~L~I~~~~~~DsG~Y~C~a~n~~g   69 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-V--QSINWTKDGVQLGENNRTR----ITG------EEVQIKDAVPRDSGLYACVTSSPSG   69 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-C--ceEEEeeCCcCCCCCceEE----EeC------CEEEECCCChhhCEEEEEEEeCCCC
Confidence            4567889999999999875 3  6799999998886543322    112      3799999999999999999999988


Q ss_pred             cEEeEEEEEE
Q psy1095         253 EVVTSACLIV  262 (325)
Q Consensus       253 ~~~~~~~l~v  262 (325)
                      .....+.|.|
T Consensus        70 ~~~~~~~v~V   79 (79)
T cd04973          70 SDTTYFSVNV   79 (79)
T ss_pred             cccEEEEEeC
Confidence            8776666543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.42  E-value=1.8e-12  Score=86.98  Aligned_cols=76  Identities=34%  Similarity=0.581  Sum_probs=58.1

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeC----CeeCCCCCc--EEEEe-------cCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKD----GKPATPNAR--VTIRE-------KEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~----~~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      |+++.|.|.+.|.|.|.++|+|+    +..+.....  ..+..       .+....|.|.+++.+|+|.|+|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            68899999999999999999984    343332221  11111       112357999999999999999999999998


Q ss_pred             EEEEEEEEE
Q psy1095         147 VEATARLEI  155 (325)
Q Consensus       147 ~~~~~~l~v  155 (325)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888888776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.42  E-value=5.3e-12  Score=84.38  Aligned_cols=83  Identities=24%  Similarity=0.432  Sum_probs=61.1

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC-CEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      +....+..|+.+.|.|.+.|.|.   .+.|+++ +..+..+.+...  ...+    ....|.|.++..+|+|.|+|.|.|
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~---~v~W~k~~g~~~~~~~r~~~--~~~g----~~~~L~I~~v~~~D~G~Y~C~A~N   77 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE---SIDWYNPQGEKIVSSQRVVV--QKEG----VRSRLTIYNANIEDAGIYRCQATD   77 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC---eEEEEeCCCeEecCCCCEEE--EeCC----CeeEEEEecCChHHCEEEEEEEEc
Confidence            34567889999999999999774   6899984 556544433222  2223    235899999999999999999999


Q ss_pred             CCCcE-EeEEEEEE
Q psy1095         250 ELGEV-VTSACLIV  262 (325)
Q Consensus       250 ~~~~~-~~~~~l~v  262 (325)
                      ..|.. ..++.|.+
T Consensus        78 ~~G~~~~~~i~l~~   91 (92)
T cd05866          78 AKGQTQEATVVLEI   91 (92)
T ss_pred             CCCcEEEEEEEEEE
Confidence            99875 44555543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.42  E-value=2.2e-12  Score=85.71  Aligned_cols=83  Identities=25%  Similarity=0.351  Sum_probs=60.8

Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC  259 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  259 (325)
                      +.+.|.|.+.+.|.+...+.|++++..+..............  ....+.|.|.+++..|+|.|+|.|.|..|....++.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG--KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEec--ccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence            468999999999874347899999988764322110000000  002358999999999999999999999999999988


Q ss_pred             EEEEe
Q psy1095         260 LIVDV  264 (325)
Q Consensus       260 l~v~~  264 (325)
                      |.|..
T Consensus        79 l~V~~   83 (85)
T cd04970          79 LIVRG   83 (85)
T ss_pred             EEEEC
Confidence            88843

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.42  E-value=2.3e-12  Score=81.43  Aligned_cols=68  Identities=22%  Similarity=0.506  Sum_probs=54.0

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.+.|.|.+.|.|.  |.+.|++++..+.......    .      ....|.|.++.  |+|.|+|.|.|..|....++
T Consensus         1 G~~v~L~C~a~G~P~--P~v~W~k~g~~l~~~~~~~----~------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a   66 (69)
T cd05739           1 GGSVNLTCVAVGAPM--PYVKWMKGGEELTKEDEMP----V------GRNVLELTNIY--ESANYTCVAISSLGMIEATA   66 (69)
T ss_pred             CCeEEEEEEeeecCC--CEEEEEECCEECCCcccee----c------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEE
Confidence            678999999999999  8999999998875433211    1      12478898874  79999999999999888776


Q ss_pred             EE
Q psy1095         259 CL  260 (325)
Q Consensus       259 ~l  260 (325)
                      .|
T Consensus        67 ~l   68 (69)
T cd05739          67 QV   68 (69)
T ss_pred             EE
Confidence            65

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.42  E-value=1.8e-12  Score=85.69  Aligned_cols=78  Identities=27%  Similarity=0.463  Sum_probs=61.2

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      ....|+.+.|.|.+.+.|.  +.+.|++++..+........    ..    ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus         5 ~~~~G~~v~L~C~~~g~p~--p~i~W~k~~~~~~~~~~~~~----~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   74 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPR--PDITWLKDNKPLTPTEIGES----RK----KKWTLSLKNLKPEDSGKYTCHVSNRAGEI   74 (82)
T ss_pred             eccCCCeEEEEEEeeEeCC--CcEEEEECCcCCcCCcccee----cC----ceEEEEEccCChhhCEEEEEEEEcCCccE
Confidence            3557999999999999988  78999999887754332111    11    23689999999999999999999999988


Q ss_pred             EeEEEEEE
Q psy1095         255 VTSACLIV  262 (325)
Q Consensus       255 ~~~~~l~v  262 (325)
                      ...+.|.|
T Consensus        75 ~~~~~v~v   82 (82)
T cd05856          75 NATYKVDV   82 (82)
T ss_pred             EEEEEEeC
Confidence            77766653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.41  E-value=2.4e-12  Score=82.93  Aligned_cols=70  Identities=29%  Similarity=0.454  Sum_probs=54.9

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCC--CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATP--NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATARLEI  155 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v  155 (325)
                      ++|.|.+.|.|.|.++|+|++.++..  ..++....   ...|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLR---SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcC---CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            47999999999999999999988863  33444322   2359999999999999999999998864 45555554

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.41  E-value=3.4e-12  Score=82.22  Aligned_cols=72  Identities=24%  Similarity=0.418  Sum_probs=55.3

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE-EeEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV-VTSACL  260 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l  260 (325)
                      ++|.|.+.|.|.  |.+.|++++..+.............       ..|.|.+++.+|+|.|.|.|.|..|.. ...+.|
T Consensus         1 a~l~C~~~G~P~--p~v~W~k~~~~~~~~~~~~~~~~~~-------g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l   71 (74)
T cd05738           1 ATMLCAASGNPD--PEITWFKDFLPVDTTSNGRIKQLRS-------GALQIENSEESDQGKYECVATNSAGTRYSAPANL   71 (74)
T ss_pred             CEEEEEEeEecC--CEEEEEECCEECccCCCCCEEEcCC-------cEEEECCCChhhCEEEEEEEECCCCceEcccEEE
Confidence            479999999998  8999999998876433222222122       379999999999999999999999974 556666


Q ss_pred             EE
Q psy1095         261 IV  262 (325)
Q Consensus       261 ~v  262 (325)
                      .|
T Consensus        72 ~v   73 (74)
T cd05738          72 YV   73 (74)
T ss_pred             EE
Confidence            55

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.41  E-value=7.5e-13  Score=85.65  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=56.0

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCC-CeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPA-PWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      |.+...|....+.+|++|+|.|.+.+.|. +.+.|++++..+..          ....|.|.++ .+|+|.|+|.+.+.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            57788888889999999999999988775 46999999988732          1235889999 99999999999764

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.41  E-value=2e-12  Score=82.78  Aligned_cols=70  Identities=29%  Similarity=0.479  Sum_probs=56.6

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      +.|.|.+.|.|.|.+.|++++..+... +....  .....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            479999999999999999998877543 22222  22357999999999999999999999998887777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.41  E-value=6.4e-12  Score=84.49  Aligned_cols=81  Identities=25%  Similarity=0.357  Sum_probs=57.9

Q ss_pred             CeeeecCcCeeEec---CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCC
Q psy1095         165 PKVLNGLENLRCCD---GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDE  240 (325)
Q Consensus       165 p~~~~~~~~~~v~~---g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~  240 (325)
                      |.|...+....+.+   |..+.|.|.+.|.|.  +.+.|++++..+..... ... ...       ..|.|.++. .+|+
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~--P~i~W~k~~~~i~~~~~-~~~-~~~-------g~L~I~~~~~~~D~   70 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPF--PIYKWRKNNLDIDLTND-RYS-MVG-------GNLVINNPDKYKDA   70 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCC--CEEEEEECCEEccCCCC-eEE-EEC-------CEEEECcCCcCCCC
Confidence            34444444443333   447999999999998  89999999988753322 111 122       479999885 6899


Q ss_pred             eEEEEEEEeCCCcEEe
Q psy1095         241 GEFTCRVANELGEVVT  256 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~  256 (325)
                      |.|.|.|.|..|...+
T Consensus        71 G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          71 GRYVCIVSNIYGKVRS   86 (93)
T ss_pred             EEEEEEEEeCcceEEE
Confidence            9999999999997654

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.40  E-value=1.5e-12  Score=87.29  Aligned_cols=76  Identities=29%  Similarity=0.518  Sum_probs=57.4

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCC----eeCCCC--CcEEEEe-------cCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDG----KPATPN--ARVTIRE-------KEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~----~~~~~~--~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      |+.+.|.|.+.|.|.|.|+|+|++    ..+...  .......       .+....|.|.+++.+|+|.|+|.+.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999963    222211  1111111       123357999999999999999999999998


Q ss_pred             EEEEEEEEE
Q psy1095         147 VEATARLEI  155 (325)
Q Consensus       147 ~~~~~~l~v  155 (325)
                      ..+++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.40  E-value=3.9e-12  Score=85.28  Aligned_cols=82  Identities=27%  Similarity=0.360  Sum_probs=58.2

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCC----EEeccCCCCceEEEec---CCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNN----RLIKLDSDMKPEVQVD---SKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      |+.+.|.|.+.|.|.  |.+.|+|++    ..+.............   .........|.|.+++.+|+|.|+|.|.|..
T Consensus         1 G~~v~l~C~v~g~P~--P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   78 (90)
T cd04974           1 GSDVEFHCKVYSDAQ--PHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI   78 (90)
T ss_pred             CCcEEEEEEEeCCCC--CeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence            678999999999998  899999963    2322211111111110   0000123579999999999999999999999


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                      |....++.|.|
T Consensus        79 G~~~~sa~L~V   89 (90)
T cd04974          79 GPSHHSAWLTV   89 (90)
T ss_pred             CcccCCEEEEe
Confidence            99999988877

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.40  E-value=2.9e-12  Score=83.06  Aligned_cols=69  Identities=35%  Similarity=0.509  Sum_probs=55.7

Q ss_pred             EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEE---EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVT---IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      +.|.|.+.+ .|.|.+.|+|++.++....+..   +........|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            469999999 8999999999999887554322   33334457899999999999999999999998766554

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.40  E-value=5e-12  Score=82.03  Aligned_cols=74  Identities=24%  Similarity=0.464  Sum_probs=60.0

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|+  +.+.|++++..+.............+      ..|.|.++..+|.|.|+|.+.|..|.....+.|.
T Consensus         1 ~~L~C~v~g~P~--p~v~W~k~~~~l~~~~~~~~~~~~~~------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (76)
T cd05736           1 ASLRCHAEGIPL--PRLTWLKNGMDITPKLSKQLTLIANG------SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLF   72 (76)
T ss_pred             CEeEeEeeecCC--CEEEEEECCEECCCCCCccEEEeCCC------CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEE
Confidence            368999999988  89999999998765544333322222      4799999999999999999999999999998888


Q ss_pred             EE
Q psy1095         262 VD  263 (325)
Q Consensus       262 v~  263 (325)
                      |.
T Consensus        73 V~   74 (76)
T cd05736          73 VE   74 (76)
T ss_pred             EE
Confidence            73

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.40  E-value=2.7e-12  Score=83.08  Aligned_cols=73  Identities=23%  Similarity=0.387  Sum_probs=55.4

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccC-CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLD-SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL  260 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  260 (325)
                      +.|.|.+.|.|.  |.+.|++++...... ..........+      ..|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus         1 a~l~C~~~G~P~--P~v~W~k~~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l   72 (75)
T cd05763           1 ARLECAATGHPT--PQIAWQKDGGTDFPAARERRMHVMPED------DVFFIVDVKIEDTGVYSCTAQNTAGSISANATL   72 (75)
T ss_pred             CEeEeecccccC--CEEEEEeCCCccCCcccccceEEecCC------CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence            478999999998  899999988643221 11111111122      479999999999999999999999999888888


Q ss_pred             EE
Q psy1095         261 IV  262 (325)
Q Consensus       261 ~v  262 (325)
                      .|
T Consensus        73 ~V   74 (75)
T cd05763          73 TV   74 (75)
T ss_pred             EE
Confidence            76

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.39  E-value=4.9e-12  Score=84.89  Aligned_cols=82  Identities=28%  Similarity=0.389  Sum_probs=58.6

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeC----CEEeccCCCCceEEEecCC---cceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRN----NRLIKLDSDMKPEVQVDSK---ENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      |+.+.|.|.+.+.|.  |.+.|+++    +..+.............+.   .....+.|.|.+++.+|+|.|+|.|.|..
T Consensus         1 G~~v~L~C~~~g~P~--P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   78 (90)
T cd05858           1 GSTVEFVCKVYSDAQ--PHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI   78 (90)
T ss_pred             CCeEEEEEEEecCCC--CEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence            678999999999998  89999984    3333322211111111110   00123689999999999999999999999


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                      |....++.|.|
T Consensus        79 G~~~~~a~L~V   89 (90)
T cd05858          79 GISHHSAWLTV   89 (90)
T ss_pred             CcccceEEEEE
Confidence            99998888877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=2.7e-12  Score=84.55  Aligned_cols=76  Identities=33%  Similarity=0.514  Sum_probs=55.6

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCe---e--CCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGK---P--ATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~---~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      |+++.|.|.+.|.|.|.++|+|++.   .  +................|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7889999999999999999999742   1  1111100000111235799999999999999999999999888777765


Q ss_pred             E
Q psy1095         155 I  155 (325)
Q Consensus       155 v  155 (325)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.39  E-value=2.1e-12  Score=86.92  Aligned_cols=82  Identities=20%  Similarity=0.370  Sum_probs=61.6

Q ss_pred             CeeEecCCcEEEEEEEEe-----cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         173 NLRCCDGDSVTFECQVQV-----VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~-----~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      ...+.+|+.+.|.|.+.+     .|.  +.+.|+|++..+.............+      ..|.|.++..+|+|.|.|.+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~--~~v~Wyk~~~~~~~~~~~~~r~~~~~------~~L~I~~~~~~DsG~Y~C~~   79 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPG--LNLTWYKSDGKTPIPTEERSRMHQQK------DLLWFLPAALEDSGLYTCVV   79 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCC--ceEEEEEcCCCCcccccccceeeecC------CeEEEccCCcccCeEEEEEE
Confidence            445678999999999988     455  78999999866432211111111222      47999999999999999999


Q ss_pred             EeCCCcEEeEEEEEE
Q psy1095         248 ANELGEVVTSACLIV  262 (325)
Q Consensus       248 ~~~~~~~~~~~~l~v  262 (325)
                      .|..|.....+.|.|
T Consensus        80 ~N~~g~~~~~~~L~v   94 (94)
T cd05756          80 RNSTYCMKVSISLTV   94 (94)
T ss_pred             cCCCccEEEEEEEEC
Confidence            999999888887764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.39  E-value=2.1e-12  Score=82.70  Aligned_cols=70  Identities=29%  Similarity=0.551  Sum_probs=55.8

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|.  +.+.|++++..+.....   ....      ....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 v~l~C~~~g~P~--p~v~W~k~~~~~~~~~~---~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   69 (71)
T cd05731           1 LLLECIAEGLPT--PEISWIKIGGELPADRT---KFEN------FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVT   69 (71)
T ss_pred             CEEEEEeeEecC--CeEEEEECCeECCCCce---eEec------CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence            479999999998  89999999887643211   1111      125899999999999999999999999988888776


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      |
T Consensus        70 V   70 (71)
T cd05731          70 V   70 (71)
T ss_pred             E
Confidence            6

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.39  E-value=1.5e-12  Score=95.10  Aligned_cols=111  Identities=14%  Similarity=0.247  Sum_probs=75.6

Q ss_pred             CCCCcccCCCCCCCccccccccccc-----ccccCCCCeeEecCCceEecCCCeEEEEEEEEec-CC-CeeEEeeCCeeC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR-----TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PA-PWTSWSKDGKPA  106 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~-----~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~v~W~~~~~~~  106 (325)
                      +|+|.+++.+|+|.|.|.+.+..+.     .+.+..+|.+...+......+|+.+.|.|.+.+. |. +.|.|++++...
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~   81 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD   81 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence            6889999999999999998664332     2345588888877776655689999999999884 54 489999987542


Q ss_pred             CC----CCcEE---EE-ecCC----eEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095         107 TP----NARVT---IR-EKED----LRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus       107 ~~----~~~~~---~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      ..    .....   .. ..++    ...|.+.....++.+.|+|.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            11    01111   11 1111    2346666555556779999997654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.39  E-value=6.4e-12  Score=81.80  Aligned_cols=71  Identities=18%  Similarity=0.397  Sum_probs=56.1

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCC-eeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  248 (325)
                      .+.+..+..|+.+.|.|.+.|.|.  | .+.|++++..+.....      .      ..+.|.|..+  .|.|.|.|.|.
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~--P~~I~W~k~g~~l~~~~~------~------~~s~L~i~~~--~d~g~Y~C~A~   67 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPE--PVEILWWQGGSPLGDPPA------P------SPSVLNVPGL--NETSKFSCEAH   67 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecC--CeEEEEEECCEECCCCCC------C------CCCEEEEccc--cCCeEEEEEEE
Confidence            345678889999999999999998  7 7999999998754111      1      1247888877  47899999999


Q ss_pred             eCCCcEEe
Q psy1095         249 NELGEVVT  256 (325)
Q Consensus       249 ~~~~~~~~  256 (325)
                      |..|...+
T Consensus        68 N~~G~~~s   75 (81)
T cd05749          68 NAKGVTTS   75 (81)
T ss_pred             eccCcEEe
Confidence            99996654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.39  E-value=4.7e-12  Score=80.09  Aligned_cols=66  Identities=35%  Similarity=0.449  Sum_probs=51.5

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR  152 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  152 (325)
                      +.|.|.+.|.|.|++.|+|++.++... .++..  .+  .+|.|.+++.+|+|.|+|.+.+..........
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~--~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~   67 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV--DG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLT   67 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe--CC--CEEEECcCCHHHCEEEEEEEEccccceEeeEE
Confidence            468999999999999999999998754 23322  22  36999999999999999999987554444333

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.38  E-value=3.8e-12  Score=80.89  Aligned_cols=69  Identities=32%  Similarity=0.529  Sum_probs=55.1

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|+  +.+.|++++..+... +...  ...       ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 v~l~C~~~g~P~--p~v~W~k~~~~~~~~-~~~~--~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPV--PTVLWRKEDGELPKG-RAEI--LDD-------KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CEEEEECccCCC--CEEEEEECCccCCCC-cEEE--eeC-------CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            479999999988  899999998766432 2111  122       4799999999999999999999999988887776


Q ss_pred             E
Q psy1095         262 V  262 (325)
Q Consensus       262 v  262 (325)
                      |
T Consensus        69 V   69 (69)
T cd05725          69 V   69 (69)
T ss_pred             C
Confidence            4

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.38  E-value=4e-12  Score=82.09  Aligned_cols=73  Identities=29%  Similarity=0.483  Sum_probs=56.5

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      |+.+.|.|.+.|.|.  +.+.|++ ++..+......  .....       ..|.|.++..+|.|.|+|.|.|..|.....
T Consensus         1 G~~~~l~C~~~g~P~--p~v~W~~~~~~~~~~~~~~--~~~~~-------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   69 (74)
T cd05764           1 GQRATLRCKARGDPE--PAIHWISPDGKLISNSSRT--LVYDN-------GTLDILITTVKDTGSFTCIASNAAGEATAT   69 (74)
T ss_pred             CCeEEEEEEccCcCC--CEEEEEeCCCEEecCCCeE--EEecC-------CEEEEEECChhhCEEEEEEEECCCCeEEEE
Confidence            678999999999888  8999997 55555433221  11122       379999999999999999999999998877


Q ss_pred             EEEEE
Q psy1095         258 ACLIV  262 (325)
Q Consensus       258 ~~l~v  262 (325)
                      +.|.|
T Consensus        70 ~~l~v   74 (74)
T cd05764          70 VELHI   74 (74)
T ss_pred             EEEEC
Confidence            77654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.38  E-value=2.7e-12  Score=83.07  Aligned_cols=67  Identities=21%  Similarity=0.439  Sum_probs=53.3

Q ss_pred             eeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       166 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      .+...+....+.+|+.++|.|.+.+.|.. ..+.|++++..+...                ...|.|.++ .+|+|.|.|
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~-~~~~W~kng~~l~~~----------------~~~l~i~~~-~~dsG~Y~C   63 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQ-NSTQWYHNGKLLETT----------------TNSYRIRAA-NNDSGEYRC   63 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCCC-ccEEEEECCEEeecc----------------CCeEEEeec-ccCCEEeEE
Confidence            34455566788999999999999887653 569999999877321                137899999 999999999


Q ss_pred             EEEeC
Q psy1095         246 RVANE  250 (325)
Q Consensus       246 ~~~~~  250 (325)
                      .|.+.
T Consensus        64 ~a~~~   68 (78)
T cd05752          64 QTQGS   68 (78)
T ss_pred             ECCCC
Confidence            99875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.38  E-value=1.2e-11  Score=83.20  Aligned_cols=83  Identities=28%  Similarity=0.383  Sum_probs=58.8

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      +....+..|+.+.|.|.+.|.|   +.+.|++ ++..+....+....  ..+   ...+.|.|.+++.+|+|.|+|.|.|
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p---~~i~W~~~~~~~~~~~~~~~~~--~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N   78 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEP---KDISWFSPNGEKLVTQQQISVV--QND---DVRSTLTIYNANIEDAGIYKCVATD   78 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeC---CeEEEECCCCCEeccCCCEEEE--eCC---CCEEEEEEecCCcccCEEEEEEEEc
Confidence            3456788999999999999984   4799998 55555443322111  111   1346899999999999999999999


Q ss_pred             CCC-cEEeEEEEE
Q psy1095         250 ELG-EVVTSACLI  261 (325)
Q Consensus       250 ~~~-~~~~~~~l~  261 (325)
                      ..| ....++.|.
T Consensus        79 ~~g~~~~~sv~l~   91 (92)
T cd04977          79 AKGTESEATVNLK   91 (92)
T ss_pred             CCCCcceeEEEEE
Confidence            865 445555543

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.37  E-value=8.1e-12  Score=83.30  Aligned_cols=80  Identities=25%  Similarity=0.469  Sum_probs=60.5

Q ss_pred             cCeeEecCCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         172 ENLRCCDGDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      ....+.+|+.+.|.|.+ .+.|.  +.+.|++++..+...... ......       ..|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~--p~i~W~k~g~~~~~~~~~-~~~~~~-------~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPE--PTVSWRKDGQPLNLDNER-VRIVDD-------GNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCC--CEEEEEECCEECCCCCCC-EEEccC-------CEEEEeECCcccCEEEEEEEEec
Confidence            45678899999999998 67777  899999999887653221 111112       47999999999999999999999


Q ss_pred             CCcEE-eEEEEE
Q psy1095         251 LGEVV-TSACLI  261 (325)
Q Consensus       251 ~~~~~-~~~~l~  261 (325)
                      .|... ..+.|.
T Consensus        74 ~G~~~s~~~~l~   85 (86)
T cd05724          74 VGERESAAARLS   85 (86)
T ss_pred             cCceeeeeEEEE
Confidence            98754 344443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.37  E-value=5.8e-12  Score=84.60  Aligned_cols=77  Identities=30%  Similarity=0.457  Sum_probs=59.4

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEecc------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKL------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      |+.+.|.|.+.+.|.  +.+.|++++..+..      ....+.....       ...|.|.+++.+|+|.|.|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~--p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G   71 (90)
T cd05726           1 GRTVTFQCEATGNPQ--PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-------TGDLTITNVQRSDVGYYICQTLNVAG   71 (90)
T ss_pred             CCEEEEEEECCccCC--CEEEEEeCCCcceeecccCCCCCCeEEECC-------CCeEEEeeCChhhCEEEEEEEEcCCC
Confidence            678999999999988  89999998764321      0111111111       24799999999999999999999999


Q ss_pred             cEEeEEEEEEEe
Q psy1095         253 EVVTSACLIVDV  264 (325)
Q Consensus       253 ~~~~~~~l~v~~  264 (325)
                      .....+.|.|..
T Consensus        72 ~~~~~~~l~V~~   83 (90)
T cd05726          72 SILTKAYLEVTD   83 (90)
T ss_pred             ceEEEEEEEEee
Confidence            999999998854

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.36  E-value=1.8e-11  Score=82.42  Aligned_cols=79  Identities=28%  Similarity=0.449  Sum_probs=60.1

Q ss_pred             CeeEecCCceEecC---CCeEEEEEEEEecCCCeeEEeeCCeeCCCC--CcEEEEecCCeEEEEEccCC-CCCCeEEEEE
Q psy1095          66 PRFYAVPHNKICDL---GDTVRFQCSVTGQPAPWTSWSKDGKPATPN--ARVTIREKEDLRFLEISEVT-LEDAGLYTIK  139 (325)
Q Consensus        66 p~~~~~~~~~~v~~---g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~  139 (325)
                      |.|...|....+.+   |+++.|.|.+.|.|.|.++|++++..+...  .++...  +  ..|.|.++. ..|+|.|+|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C~   77 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV--G--GNLVISNPSKAKDAGRYQCL   77 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE--C--CEEEEecCCccCCCEEEEEE
Confidence            66777777765544   467999999999999999999999988432  233322  2  258888876 4899999999


Q ss_pred             EEeCCeeEE
Q psy1095         140 VENNYGSVE  148 (325)
Q Consensus       140 ~~~~~~~~~  148 (325)
                      +.|..|...
T Consensus        78 a~N~~G~~~   86 (91)
T cd04967          78 ASNIVGTVL   86 (91)
T ss_pred             EEcCCCEEE
Confidence            999988643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.36  E-value=3e-11  Score=81.14  Aligned_cols=91  Identities=18%  Similarity=0.347  Sum_probs=66.7

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCC-CeEEEEEE
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED-EGEFTCRV  247 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~  247 (325)
                      .......+.+|+.+.|.|.+.+.|++ ..+.|.+.+..+......+.............+.|.|.++...| .|.|.|.|
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~P-~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a   84 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPPP-DRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA   84 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCCC-cEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence            44456778899999999999888874 57889888777655432233322221122256899999998766 79999999


Q ss_pred             EeCCCcEEeEEEE
Q psy1095         248 ANELGEVVTSACL  260 (325)
Q Consensus       248 ~~~~~~~~~~~~l  260 (325)
                      .|..|.....+.|
T Consensus        85 ~N~~G~d~~~i~L   97 (98)
T cd05898          85 WNSFGSGTAIIQL   97 (98)
T ss_pred             EeCCccceEEEEe
Confidence            9999998877665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.36  E-value=1.3e-11  Score=81.37  Aligned_cols=77  Identities=21%  Similarity=0.332  Sum_probs=56.6

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCCCC----cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe--eEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG--SVEATARL  153 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l  153 (325)
                      |++++|.|.+.+.|.+.+.|+++++......    +..+.......+|.|.+++.+|+|.|.|.+.+...  ...+++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999998776432211    11111122256799999999999999999998765  45667777


Q ss_pred             EEE
Q psy1095         154 EIM  156 (325)
Q Consensus       154 ~v~  156 (325)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.36  E-value=1.4e-11  Score=82.82  Aligned_cols=81  Identities=22%  Similarity=0.380  Sum_probs=59.0

Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC--------CCCCcEEEEecC-CeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA--------TPNARVTIREKE-DLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+..+.+|+++.|.|.+.+.|.|.+.|++++..+        ....++.+.... ....|.|.+++.+|+|.|+|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            4567899999999999999999999999877532        122344433322 3578999999999999999999762


Q ss_pred             CeeEEEEEEEE
Q psy1095         144 YGSVEATARLE  154 (325)
Q Consensus       144 ~~~~~~~~~l~  154 (325)
                       ....+...|.
T Consensus        85 -~~~~~~~~~~   94 (95)
T cd05882          85 -PVRTAKATVT   94 (95)
T ss_pred             -ccccEEEEEE
Confidence             2334444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.34  E-value=5.4e-12  Score=81.90  Aligned_cols=66  Identities=24%  Similarity=0.463  Sum_probs=49.6

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCC----CCCeEEEEEEEeCCeeEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL----EDAGLYTIKVENNYGSVE  148 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~  148 (325)
                      +.|.|.+.|.|.|.++|+|++..+.......+........|.|.++..    +|+|.|+|.+.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            479999999999999999999988543322222223345688887753    789999999999988643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.34  E-value=8.3e-12  Score=78.97  Aligned_cols=69  Identities=17%  Similarity=0.286  Sum_probs=52.8

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +.|.|.+.|.|+  |.+.|+|++.++..... ..  ...+      ..|.|.++..+|+|.|+|.|.|..........++
T Consensus         1 ~~l~c~v~g~P~--P~v~W~kdg~~l~~~~~-~~--~~~~------~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPA--PEVIWLKDGLPAAEKCS-RY--HVDG------YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCC--CeEEEEECCEECCCCCc-EE--EeCC------CEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            368999999999  89999999988765322 11  1222      3799999999999999999999866655554443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.34  E-value=2.4e-11  Score=82.03  Aligned_cols=82  Identities=24%  Similarity=0.286  Sum_probs=59.9

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEeeCC--------eeCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--------KPATPNARVTIREK-EDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--------~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      +.+..+.+|+++.|.|.+.+.|.+.+.|++.+        .......++..... ....+|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            45678999999999999999999999998632        22223446554332 3456899999999999999999986


Q ss_pred             CCeeEEEEEEEE
Q psy1095         143 NYGSVEATARLE  154 (325)
Q Consensus       143 ~~~~~~~~~~l~  154 (325)
                      ... ......|.
T Consensus        84 ~~~-~~~~~~l~   94 (95)
T cd07701          84 MPV-KTSKAYLT   94 (95)
T ss_pred             ecC-ccEEEEEE
Confidence            432 24455544

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.33  E-value=1.5e-11  Score=79.68  Aligned_cols=72  Identities=22%  Similarity=0.490  Sum_probs=55.4

Q ss_pred             EEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCce-EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095         182 VTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKP-EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC  259 (325)
Q Consensus       182 v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  259 (325)
                      +.|.|.+.+ .|+  +.+.|++++..+........ ......    ....|.|.++..+|.|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~--p~~~W~k~g~~l~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPS--LRFKWFKDGKELNRKNKPRNIKIRNKK----KNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCC--ceEEEEcCCeeccccCCcceEEEEecC----ceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            479999999 777  89999999998875544321 111111    3468999999999999999999999998776653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.33  E-value=3e-11  Score=79.33  Aligned_cols=68  Identities=26%  Similarity=0.430  Sum_probs=55.6

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .|....+..|+++.|.|.+.+ +.+.+.|++++.++... .++.+. .+   .|.|.+++.+|+|.|+|.+.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~-~~---~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY-RD---GLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE-CC---cEEEeCCCHHHCEEEEEEEEec
Confidence            466788999999999999754 67899999999999765 344432 22   4999999999999999999765

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>KOG3515|consensus

Probab=99.33  E-value=2e-11  Score=108.43  Aligned_cols=283  Identities=15%  Similarity=0.236  Sum_probs=157.5

Q ss_pred             CCCCCCCcccCCCCCCCcccccccccccccccC--------C-CCeeEe--cCCceEecCCCeEEEEEEEE-ecCCCeeE
Q psy1095          31 TPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLT--------S-SPRFYA--VPHNKICDLGDTVRFQCSVT-GQPAPWTS   98 (325)
Q Consensus        31 ~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~--------~-~p~~~~--~~~~~~v~~g~~v~l~C~~~-~~p~~~v~   98 (325)
                      .++-+.+...+-+|.|+|+|.+.+.........        . ...+..  ...-..+.+|+.+.|.|.+. +.|.+.++
T Consensus       161 ~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~  240 (741)
T KOG3515|consen  161 EPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQT  240 (741)
T ss_pred             cccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhh
Confidence            356677889999999999999988544222211        1 112222  22224578999999999764 58999999


Q ss_pred             EeeCCeeCCCCCcEEEEecCC--eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeE
Q psy1095          99 WSKDGKPATPNARVTIREKED--LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRC  176 (325)
Q Consensus        99 W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v  176 (325)
                      |+++...+..+........+.  ...+.+..-..++.-...|.+.| .  ......+.+..++.     ..........+
T Consensus       241 w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~--~~~~~~tav~~~~~-----~~~Ist~~~~l  312 (741)
T KOG3515|consen  241 WYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-L--LAASQITAVQVKPT-----AVPISTSDSGL  312 (741)
T ss_pred             hccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-c--cccceeeecccccc-----cccccCccccc
Confidence            999887665431111111111  12244444444555577799987 1  11222233333211     11112223346


Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  256 (325)
                      ..|+...+.|...+..++ +.+.|+++.............  ...........+........|.|.|+|.+.+.......
T Consensus       313 s~g~s~r~~c~~sss~p~-~~i~w~~~~~~~~~~~~~~~~--t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~s  389 (741)
T KOG3515|consen  313 SSGRSARSSCVSSSSKPP-AHIAWYKDTKMPKGSQKASSK--TSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSS  389 (741)
T ss_pred             ccccccccceeccCCCCc-cceeeeccCcccccccCcccC--CCcccceeeEEeeecccchhcCceEEcccccccccccc
Confidence            678999999977543332 789999854433211111000  00000111234555667788999999999987754444


Q ss_pred             EEEEEEEeeCCeecC---------------------CCC---c-e-------EEEEe--------CCEEEEEEcCCCCCC
Q psy1095         257 SACLIVDVVKGKDLT---------------------SDG---R-L-------NIITV--------GGTSVLTIEDITGDD  296 (325)
Q Consensus       257 ~~~l~v~~~~~~~~~---------------------~~~---~-~-------~~~~~--------~~~~~l~i~~v~~~d  296 (325)
                      +..+.+..-+...+.                     .+.   + +       .+...        .....+.+.++...|
T Consensus       390 ss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d  469 (741)
T KOG3515|consen  390 SSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSD  469 (741)
T ss_pred             ccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeecc
Confidence            333333211111000                     000   0 0       01111        111234466788999


Q ss_pred             CeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         297 SGKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       297 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                      .|.|.|.|+|..|.....+.+.++..|-
T Consensus       470 ~g~y~~tatns~gg~~~~~~~~~~~sp~  497 (741)
T KOG3515|consen  470 GGSYGLTATNSPGGAQAYLLLGVHTSPH  497 (741)
T ss_pred             CCcceeeeccCCCceeeEEeeccccCCc
Confidence            9999999999999999988888876654

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.33  E-value=1.5e-11  Score=80.94  Aligned_cols=77  Identities=29%  Similarity=0.530  Sum_probs=55.7

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCE---EeccCC-CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNR---LIKLDS-DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      |+.+.|.|.+.+.|.  +.+.|++++.   .+.... .........     ....|.|.++..+|+|.|.|.|.|..|..
T Consensus         1 G~~v~l~C~~~g~P~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   73 (81)
T cd05765           1 GETASFHCDVTGRPP--PEITWEKQVHGKENLIMRPNHVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGLL   73 (81)
T ss_pred             CCcEEEEeeccccCC--CcEEEEecCCCCcceeecCCcccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCceE
Confidence            688999999999888  8999999732   111111 100000010     12589999999999999999999999999


Q ss_pred             EeEEEEEE
Q psy1095         255 VTSACLIV  262 (325)
Q Consensus       255 ~~~~~l~v  262 (325)
                      ...+.|.|
T Consensus        74 ~~~~~l~v   81 (81)
T cd05765          74 RANFPLSV   81 (81)
T ss_pred             EEEEEEeC
Confidence            88888764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.32  E-value=2.3e-11  Score=80.53  Aligned_cols=81  Identities=19%  Similarity=0.308  Sum_probs=58.9

Q ss_pred             CCcEEEEEEEEec--CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095         179 GDSVTFECQVQVV--PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       179 g~~v~l~C~~~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  256 (325)
                      |+.+.|.|.+.+.  |+  +.+.|++++..+.......... .........+.|.|.+++.+|+|.|+|.|.|..+....
T Consensus         1 Ge~~~L~C~~~g~~~~~--~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~   77 (84)
T cd05742           1 GETLVLNCTVLTELNEG--VDFQWTYPGKKRGRGKSMVTRQ-SLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE   77 (84)
T ss_pred             CCeEEEEEEEEeCCCcc--EEEEEecCCcccCCceEeeccc-ccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence            7889999999998  55  8999998776543221100000 00111124578999999999999999999999999888


Q ss_pred             EEEEEE
Q psy1095         257 SACLIV  262 (325)
Q Consensus       257 ~~~l~v  262 (325)
                      ++.|.|
T Consensus        78 s~~v~v   83 (84)
T cd05742          78 STKVNI   83 (84)
T ss_pred             EEEEEE
Confidence            888765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.31  E-value=1.6e-11  Score=81.32  Aligned_cols=76  Identities=22%  Similarity=0.361  Sum_probs=57.4

Q ss_pred             CCeEEEEEEEEec--CCCeeEEeeCCeeCCCCCcE----E-EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095          80 GDTVRFQCSVTGQ--PAPWTSWSKDGKPATPNARV----T-IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR  152 (325)
Q Consensus        80 g~~v~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~----~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  152 (325)
                      |+++.|.|.+.+.  |.+.+.|++++..+......    . .........|.|.+++..|+|.|+|.+.|..+....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  78899999877654322110    0 011123467999999999999999999999888777777


Q ss_pred             EEE
Q psy1095         153 LEI  155 (325)
Q Consensus       153 l~v  155 (325)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.31  E-value=1.9e-11  Score=79.11  Aligned_cols=65  Identities=26%  Similarity=0.464  Sum_probs=48.5

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCC--CCCcEEEEecCCeEEEEEccCC----CCCCeEEEEEEEeCCeeEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPAT--PNARVTIREKEDLRFLEISEVT----LEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      +.|.|.+.|.|.|.++|+|++..+.  ...++.+..  ...+|.|..+.    .+|+|.|+|.+.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            4799999999999999999998764  233444322  23468887654    24699999999999986543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.31  E-value=1.6e-11  Score=79.45  Aligned_cols=65  Identities=25%  Similarity=0.489  Sum_probs=48.0

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCC--CcEEEEecCCeEEEEEccCCC----CCCeEEEEEEEeCCeeEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPN--ARVTIREKEDLRFLEISEVTL----EDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~  149 (325)
                      +.|.|.+.|.|.|.++|+|++.++...  .+..+...  ..+|.|..+..    .|.|.|+|.+.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~--~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPN--TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCC--CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            579999999999999999999987432  23333322  24577766654    4789999999999986543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.31  E-value=7.3e-11  Score=78.51  Aligned_cols=79  Identities=35%  Similarity=0.613  Sum_probs=63.0

Q ss_pred             EecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+......... .......|.|.++..+|.|.|.|.+.|..|....++.|.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            4668999999999999999999999999887654433322 223345799999999999999999999988777766665

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.30  E-value=5.8e-11  Score=79.88  Aligned_cols=82  Identities=23%  Similarity=0.439  Sum_probs=58.0

Q ss_pred             CeeeecCcCeeEe---cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCC
Q psy1095         165 PKVLNGLENLRCC---DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDE  240 (325)
Q Consensus       165 p~~~~~~~~~~v~---~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~  240 (325)
                      |.|...+....+.   .|+.+.|.|.+.|.|.  +.+.|++++..+......... ...       ..|.|.++. .+|+
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~--p~i~W~k~~~~l~~~~~~~~~-~~~-------~~L~i~~~~~~~d~   71 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPP--PTYRWLMNGTEIDDEPDSRYS-LVG-------GNLVISNPSKAKDA   71 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCC--CEEEEEECCEECCCCCCCCEE-EEC-------CEEEEecCCccCCC
Confidence            3444444444333   3467999999999988  899999999887543332222 122       378898876 4899


Q ss_pred             eEEEEEEEeCCCcEEe
Q psy1095         241 GEFTCRVANELGEVVT  256 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~  256 (325)
                      |.|+|.|.|..|...+
T Consensus        72 G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          72 GRYQCLASNIVGTVLS   87 (91)
T ss_pred             EEEEEEEEcCCCEEEe
Confidence            9999999999997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.30  E-value=8.9e-11  Score=78.88  Aligned_cols=88  Identities=20%  Similarity=0.345  Sum_probs=68.2

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCC--CcEEEEec----CCeEEEEEccCCCCC-CeEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPN--ARVTIREK----EDLRFLEISEVTLED-AGLY  136 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y  136 (325)
                      ||.| .......+.+|+++.|.|.+.+.|.| .|.|.+.+..+...  .++.+...    +....|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5666 45556678899999999999887776 57898887776543  46666543    356789999998766 7999


Q ss_pred             EEEEEeCCeeEEEEEEE
Q psy1095         137 TIKVENNYGSVEATARL  153 (325)
Q Consensus       137 ~C~~~~~~~~~~~~~~l  153 (325)
                      .|.+.|..|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999987766654

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.30  E-value=3e-11  Score=80.22  Aligned_cols=79  Identities=30%  Similarity=0.391  Sum_probs=62.1

Q ss_pred             EecCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      ...|....+.+|++++|.|.+.+ .|.+.+.|++++..+....    .  .....|.|.+++.+|+|.|.|.+.|..|..
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M--DFNGILTIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c--ccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence            34566778899999999999864 6888999999987654321    1  122469999999999999999999998877


Q ss_pred             EEEEEE
Q psy1095         148 EATARL  153 (325)
Q Consensus       148 ~~~~~l  153 (325)
                      .+.+.|
T Consensus        79 ~~~~~l   84 (85)
T cd05754          79 EATATL   84 (85)
T ss_pred             eEEEEE
Confidence            766554

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.30  E-value=3.2e-11  Score=78.19  Aligned_cols=69  Identities=29%  Similarity=0.500  Sum_probs=53.4

Q ss_pred             EEEEEEEEe-cCCCeeEEeeCCeeCCCC----CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          83 VRFQCSVTG-QPAPWTSWSKDGKPATPN----ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      +.|.|.+.+ .|.+.+.|++++..+...    .++..........|.|.++...|+|.|+|.+.|..|....++
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            479999864 688899999999888532    223333334456799999999999999999999988766554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.29  E-value=2.4e-11  Score=78.88  Aligned_cols=67  Identities=28%  Similarity=0.588  Sum_probs=50.1

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCC----CCCeEEEEEEEeCCCcEEe
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP----EDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~  256 (325)
                      +.|.|.+.|.|+  +.+.|++++..+.............      .+.|.|.++..    +|+|.|.|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~--P~v~W~k~g~~l~~~~~~~~~~~~~------~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPP--PTFSWTRNGTHFDPEKDPRVTMKPD------SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCC--CeEEEEECCeECCCCCCCCEEEeCC------CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            479999999998  8999999999886443333221121      24788887753    7899999999999997554

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.28  E-value=4.8e-11  Score=79.97  Aligned_cols=80  Identities=25%  Similarity=0.322  Sum_probs=60.2

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC----cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC-ee
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY-GS  146 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~  146 (325)
                      |..+.+.+|+++.|.|.+.+ |.+.+.|++++..+....    ++...  .  ..|.|.+++.+|+|.|.|.+.+.. +.
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~   77 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--E--DGLLIRSVSPADAGVYTCQSVEHGFKQ   77 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--C--CCEEEccCCHHHCEEEEEEEecCccce
Confidence            45567889999999999876 878999999988765432    22222  1  239999999999999999998654 34


Q ss_pred             EEEEEEEEEE
Q psy1095         147 VEATARLEIM  156 (325)
Q Consensus       147 ~~~~~~l~v~  156 (325)
                      ...+..|.|.
T Consensus        78 ~~~~~~l~V~   87 (89)
T cd04979          78 TLATYSLNVL   87 (89)
T ss_pred             eEeEEEEEEe
Confidence            5566666664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.27  E-value=4.7e-11  Score=77.28  Aligned_cols=67  Identities=28%  Similarity=0.549  Sum_probs=49.2

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCC----CCCeEEEEEEEeCCCcEEe
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP----EDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~  256 (325)
                      +.|.|.+.|.|.  |++.|++++..+.............+      +.|.|..+..    .|.|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a~G~P~--P~i~W~k~g~~l~~~~~~~~~~~~~~------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPP--PSFSWTRNGTHFDIDKDPKVTMKPNT------GTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCC--CeEEEEECCeECCCcCCCCEEEeCCC------ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            479999999998  89999999988754433332222222      4677876664    3789999999999997655

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.26  E-value=1e-10  Score=77.16  Aligned_cols=80  Identities=25%  Similarity=0.393  Sum_probs=54.7

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC--cEEe
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG--EVVT  256 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~  256 (325)
                      |+.++|.|.+.+.|.  +.+.|++++................  .....+.|.|.+++.+|+|.|.|.|.|..+  ....
T Consensus         1 Ge~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~   76 (84)
T cd05861           1 GETITVNCIVQGNEV--VDFSWTYPGKDIGKGIPEVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFK   76 (84)
T ss_pred             CCcEEEEEEEECCCc--cEEEEEECCccCCCCceEEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeE
Confidence            789999999999877  8999998776432111000000011  112357899999999999999999998776  4555


Q ss_pred             EEEEEE
Q psy1095         257 SACLIV  262 (325)
Q Consensus       257 ~~~l~v  262 (325)
                      ++.|+|
T Consensus        77 sv~i~V   82 (84)
T cd05861          77 KVNITV   82 (84)
T ss_pred             EEEEEE
Confidence            555555

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.25  E-value=8.3e-11  Score=76.24  Aligned_cols=72  Identities=24%  Similarity=0.491  Sum_probs=52.3

Q ss_pred             EEEEEEEEec-CCCCCeeEEeeCCEEeccCCCC--ceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         182 VTFECQVQVV-PPNDHDISWFRNNRLIKLDSDM--KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       182 v~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      +.|.|.+.+. |.  +.+.|++++..+......  ........    ..+.|.|.++..+|+|.|+|.+.|..|....++
T Consensus         1 ~~L~C~a~~~~p~--~~~~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPS--LRFKWFKNGKEIGAKNKPDNKIKIRKKK----KSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCC--CceEEEECCcccccCCCCCceEEEEeCC----cEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            4799998753 44  799999999887643221  11111111    346899999999999999999999999877665


Q ss_pred             E
Q psy1095         259 C  259 (325)
Q Consensus       259 ~  259 (325)
                      .
T Consensus        75 ~   75 (76)
T cd05895          75 N   75 (76)
T ss_pred             e
Confidence            4

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.25  E-value=4.1e-11  Score=78.78  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=53.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +.+....+.+|++|+|.|.+.+ .+.+.+.|+|++..+...        .....|.|.+++.+|+|.|+|.+.+..+
T Consensus         4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753           4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCc
Confidence            3444556899999999999854 566789999999866421        1234699999999999999999998776

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.24  E-value=5.7e-11  Score=77.62  Aligned_cols=69  Identities=29%  Similarity=0.448  Sum_probs=50.5

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCC--------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEE
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPAT--------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATARL  153 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l  153 (325)
                      |+|.|.+.|.|.|.+.|++++....        ...++....   ..+|.|.++..+|+|.|.|.+.|..|.. ...+.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS---NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec---CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            5799999999999999999643211        122333322   2469999999999999999999998865 444444


Q ss_pred             E
Q psy1095         154 E  154 (325)
Q Consensus       154 ~  154 (325)
                      .
T Consensus        78 ~   78 (79)
T cd05734          78 T   78 (79)
T ss_pred             e
Confidence            3

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.24  E-value=8.6e-11  Score=76.04  Aligned_cols=68  Identities=24%  Similarity=0.492  Sum_probs=49.1

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC----CCCCeEEEEEEEeCCCcEEeE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY----PEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      +.|.|.+.|.|.  |.+.|++++..+.............      ...|.|..+.    .+|+|.|.|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~--P~v~W~k~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPV--PTFQWTRNGKFFNVAKDPRVSMRRR------SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCC--CEEEEEECCEEccCcCCCcEEEeCC------CceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            469999999998  9999999998765333323221112      2478887764    246999999999999976543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.24  E-value=1.7e-10  Score=77.58  Aligned_cols=73  Identities=19%  Similarity=0.340  Sum_probs=52.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCC------CceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD------MKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      ....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.....      .+......   ......|.|.+++.+|+|.|+|
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~--~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~nV~~~D~G~YtC   79 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDN--SSLQWSNTAQQTLYFGEKRALRDNRIQLVKS---TPTELIISISNVQLSDEGEYTC   79 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCC--CeEEEeccCccEEEeCCeEEEeCCeEEEEeC---CCceEEEEECCCCcccCEEEEE
Confidence            3567889999999999999887  88999998764321111      01110000   0124689999999999999999


Q ss_pred             EEEe
Q psy1095         246 RVAN  249 (325)
Q Consensus       246 ~~~~  249 (325)
                      .+..
T Consensus        80 ~~~t   83 (95)
T cd05882          80 SIFT   83 (95)
T ss_pred             EEEe
Confidence            9987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.23  E-value=1.4e-10  Score=76.72  Aligned_cols=85  Identities=16%  Similarity=0.258  Sum_probs=59.1

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.+.|.|.+.+.+.....+.|..++.......................+.|.|.+++.+|+|.|+|.|.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78899999998876544788998877644211100000000011122457999999999999999999999998888888


Q ss_pred             EEEEE
Q psy1095         259 CLIVD  263 (325)
Q Consensus       259 ~l~v~  263 (325)
                      .|.|+
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88774

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.23  E-value=9.8e-11  Score=76.51  Aligned_cols=71  Identities=28%  Similarity=0.458  Sum_probs=49.5

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccC------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE-
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLD------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV-  254 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-  254 (325)
                      ++|.|.+.|.|.  |.+.|++++......      ...+....       ....|.|.++..+|+|.|.|.|.|..|.. 
T Consensus         1 v~l~C~~~G~P~--P~v~W~~~~~~~~~~~~~~~~~~~r~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   71 (79)
T cd05734           1 VTLNCSAEGYPP--PTIVWKHSKGRGHPQHTHTCCLAGRIQLL-------SNGSLLIKHVLEEDSGYYLCKVSNDVGADA   71 (79)
T ss_pred             CEeEeeCeEeCC--CEEEEEECCCccccccccccccCCCEEEe-------cCCeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence            579999999998  899999964322111      01111111       12589999999999999999999999876 


Q ss_pred             EeEEEEE
Q psy1095         255 VTSACLI  261 (325)
Q Consensus       255 ~~~~~l~  261 (325)
                      ...+.|.
T Consensus        72 s~~~~l~   78 (79)
T cd05734          72 SKSMVLT   78 (79)
T ss_pred             ceEEEEe
Confidence            4444443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.23  E-value=2.2e-10  Score=76.20  Aligned_cols=80  Identities=23%  Similarity=0.421  Sum_probs=61.1

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      .+..|+.+.|.|.+.+.|.  +.+.|++++..+......... ..    ......|.|.++..+|.|.|.|.+.|..|..
T Consensus         5 ~~~~G~~~~l~C~~~~~p~--~~v~W~k~~~~~~~~~~~~~~-~~----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~   77 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPR--PTITWLKDGKPFKKEHRIGGY-KV----RKKKWTLILESVVPSDSGKYTCIVENKYGSI   77 (85)
T ss_pred             EecCCCcEEEEEEcCCCCC--CeEEEEECCEECcccCceeEE-Ec----cCcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence            4567999999999998887  889999998877543322111 00    1133579999999999999999999999988


Q ss_pred             EeEEEEE
Q psy1095         255 VTSACLI  261 (325)
Q Consensus       255 ~~~~~l~  261 (325)
                      ..++.|.
T Consensus        78 ~~~~~l~   84 (85)
T cd05729          78 NHTYKVD   84 (85)
T ss_pred             EEEEEEe
Confidence            7776665

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.22  E-value=1.1e-10  Score=77.52  Aligned_cols=75  Identities=23%  Similarity=0.342  Sum_probs=58.8

Q ss_pred             cCeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         172 ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      ....+.+|+.++|.|.+.+ .|.  +.+.|++++..+....    .  .      ..+.|.|.+++.+|+|.|.|.+.|.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~--~~i~W~~~~~~~~~~~----~--~------~~~~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754           9 RSQEVRPGADVSFICRAKSKSPA--YTLVWTRVGGGLPSRA----M--D------FNGILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             CceEEcCCCCEEEEEEcCCCCCC--cEEEEEECCCcCCCcc----c--c------cCCEEEECCCCHHHCEEEEEEEecc
Confidence            4557889999999999975 444  8999999886643211    0  1      1248999999999999999999999


Q ss_pred             CCcEEeEEEE
Q psy1095         251 LGEVVTSACL  260 (325)
Q Consensus       251 ~~~~~~~~~l  260 (325)
                      .|.....+.|
T Consensus        75 ~g~~~~~~~l   84 (85)
T cd05754          75 LDTDEATATL   84 (85)
T ss_pred             CCeEeEEEEE
Confidence            9988877665

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>smart00410 IG_like Immunoglobulin like

Probab=99.22  E-value=6.1e-10  Score=73.90  Aligned_cols=83  Identities=33%  Similarity=0.550  Sum_probs=67.3

Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEeeC-CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKD-GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      ....+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++..|+|.|.|.+.+..+.....+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            455678999999999998888889999998 8887756666666655567899999999999999999997776665555


Q ss_pred             EEEE
Q psy1095         152 RLEI  155 (325)
Q Consensus       152 ~l~v  155 (325)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00410       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.22  E-value=6.1e-10  Score=73.90  Aligned_cols=83  Identities=33%  Similarity=0.550  Sum_probs=67.3

Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEeeC-CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKD-GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      ....+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++..|+|.|.|.+.+..+.....+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            455678999999999998888889999998 8887756666666655567899999999999999999997776665555


Q ss_pred             EEEE
Q psy1095         152 RLEI  155 (325)
Q Consensus       152 ~l~v  155 (325)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00409       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5554

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.22  E-value=1e-10  Score=78.20  Aligned_cols=72  Identities=25%  Similarity=0.228  Sum_probs=56.1

Q ss_pred             eEecCCCeEEEEEEEEe-----cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          75 KICDLGDTVRFQCSVTG-----QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      ..+.+|+++.|.|...+     +|.|.+.|||++.++....+...    ....|.|.+++.+|+|.|+|.+.+..+....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            45788999999998643     25789999999999876544332    2246999999999999999999987765443


Q ss_pred             E
Q psy1095         150 T  150 (325)
Q Consensus       150 ~  150 (325)
                      .
T Consensus        81 ~   81 (92)
T cd05757          81 N   81 (92)
T ss_pred             E
Confidence            3

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.21  E-value=2.3e-10  Score=75.16  Aligned_cols=68  Identities=15%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+..|+++.|.|.+.+ +.  +.+.|++++..+..+.. +.. ..++       .|.|.+++.+|+|.|+|.+.+..
T Consensus         4 ~~~~v~~G~~v~L~C~~~~-~~--~~i~W~~ng~~i~~~~~-r~~-~~~~-------~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           4 RQRTFKLGNNAELKCSPKS-NL--ARVVWKFDGKVLTPESA-KYL-LYRD-------GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             ceEEEECCCCEEEEEECCC-CC--CeEEEEECCEECCCCCc-eEE-EECC-------cEEEeCCCHHHCEEEEEEEEecc
Confidence            4567889999999999753 44  78999999999876532 222 2333       69999999999999999998864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.18  E-value=1.3e-09  Score=72.72  Aligned_cols=87  Identities=16%  Similarity=0.261  Sum_probs=68.8

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCe-eEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHD-ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...+.+|+.+.|.|.+.++|+  +. +.|.+++..+........ ........++.+.|.|..+..+|+|.|+|.|.|..
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~--p~~~~W~~~~~~l~~~~~~~~-~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~   88 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPK--PEHQQWIYMNRTLTNTSDHYV-KSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD   88 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCC--CeeeEEEcCCcccCcccccee-EEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence            456889999999999999999  76 999998876644333211 11121234577999999999999999999999999


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                      .....++.|.|
T Consensus        89 ~~~s~tF~l~v   99 (101)
T cd05860          89 ASASVTFNVYV   99 (101)
T ss_pred             CeEEEEEEEEE
Confidence            99988888876

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.17  E-value=2.7e-10  Score=76.15  Aligned_cols=79  Identities=15%  Similarity=0.209  Sum_probs=59.4

Q ss_pred             eeEecCCcEEEEEEEEecCC---CCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         174 LRCCDGDSVTFECQVQVVPP---NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      ..+.+|+.+.|.|...+.+.   +.+.+.|+|++.++...... .  . .      ...|.|.++..+|+|.|+|.+.|.
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~--~-~------~~~L~I~~v~~~DsG~YtC~~~n~   74 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-F--V-K------GSKLLIQNVTEEDAGNYTCKLTFT   74 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-E--e-c------CCEEEEeeCChhhCEEEEEEEEec
Confidence            45678999999998754321   23799999999988754321 1  1 2      258999999999999999999999


Q ss_pred             CCcEEeEEEEEE
Q psy1095         251 LGEVVTSACLIV  262 (325)
Q Consensus       251 ~~~~~~~~~l~v  262 (325)
                      .+.....+...+
T Consensus        75 ~~~~~~~~t~t~   86 (92)
T cd05757          75 HNGKQYNVTRTI   86 (92)
T ss_pred             CCCEEEEEEEEE
Confidence            887776655554

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.15  E-value=6.9e-10  Score=75.33  Aligned_cols=82  Identities=21%  Similarity=0.306  Sum_probs=57.8

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC--------CCCCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA--------TPNARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      +....+.+|++++|.|.+.+.+.+.+.|++.+..+        ....++.+.. .+....|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            34567899999999999988888899998632211        1224555432 23456799999999999999999986


Q ss_pred             CCeeEEEEEEEE
Q psy1095         143 NYGSVEATARLE  154 (325)
Q Consensus       143 ~~~~~~~~~~l~  154 (325)
                      ... ..+.+.|.
T Consensus        84 ~~~-~~~~~~~~   94 (95)
T cd05717          84 MPV-QTAKATVT   94 (95)
T ss_pred             CCC-ceEEEEEE
Confidence            543 34455544

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.14  E-value=5.7e-10  Score=75.35  Aligned_cols=83  Identities=19%  Similarity=0.330  Sum_probs=56.3

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEec--------cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--------LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      ....+.+|+.+.|.|.+.+.|.  +.+.|++.+..+.        ...++..  ...   ......|.|.+++.+|+|.|
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~--~~v~W~~~~~~~l~~~~~~~~~~~r~~~--~~~---~~~~~sL~I~~v~~~DsG~Y   77 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDN--TSLQWSNPAQQTLYFDDKKALRDNRIEL--VRA---SWHELSISISDVSLSDEGQY   77 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCc--eEEEEeCCCCeEEEEcCcccccCCCEEE--EEC---CCCcEEEEECcCCcccCEEE
Confidence            3567889999999999998887  8899987433211        1112111  011   01336899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIV  262 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v  262 (325)
                      .|.+.+..+ ....+.|+|
T Consensus        78 ~C~~~t~~~-~~~~~~l~v   95 (95)
T cd07701          78 TCSLFTMPV-KTSKAYLTV   95 (95)
T ss_pred             EEEeEeecC-ccEEEEEEC
Confidence            999988433 355555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.14  E-value=5.5e-10  Score=73.27  Aligned_cols=78  Identities=32%  Similarity=0.637  Sum_probs=58.2

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      |.+...+  ..+.+|+++.|.|.+.+.|.+.+.|++++..+....       +   .+.+..+..+|.|.|+|.+.+..+
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~---~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------N---GLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------S---EEEESSEEGGGTEEEEEEEEETTE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------e---eeeeeeeccccCEEEEEEEEeCCC
Confidence            5565554  558899999999999988889999999887665221       1   167788899999999999998654


Q ss_pred             -eEEEEEEEEE
Q psy1095         146 -SVEATARLEI  155 (325)
Q Consensus       146 -~~~~~~~l~v  155 (325)
                       .....+.|.|
T Consensus        70 ~~~s~~~~v~V   80 (80)
T PF13895_consen   70 SNTSTSVNVTV   80 (80)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CeEeeeEEeeC
Confidence             3445555544

...

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.13  E-value=5.8e-10  Score=74.68  Aligned_cols=81  Identities=21%  Similarity=0.385  Sum_probs=56.6

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC-
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL-  251 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-  251 (325)
                      ...+.+|+.+.|.|.+.+ |.  +.+.|++++..+..............      ..|.|.+++.+|+|.|.|.+.+.. 
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~--~~i~W~k~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~~~   75 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NL--ASVVWLFQGGPLQRKEEPEERLLVTE------DGLLIRSVSPADAGVYTCQSVEHGF   75 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CC--ceEEEEECCcccccccCcCceEEEcC------CCEEEccCCHHHCEEEEEEEecCcc
Confidence            456788999999999876 55  78999999887654321011111111      359999999999999999998754 


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                      +....+..|.|
T Consensus        76 ~~~~~~~~l~V   86 (89)
T cd04979          76 KQTLATYSLNV   86 (89)
T ss_pred             ceeEeEEEEEE
Confidence            34444555555

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.13  E-value=3.4e-10  Score=74.39  Aligned_cols=68  Identities=16%  Similarity=0.333  Sum_probs=52.6

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+.+|+.++|.|.+.+..+. ..+.|++++..+....              ....|.|.+++.+|+|.|+|.+.+..+
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~-~~~~w~k~g~~~~~~~--------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPV-YKVTYYRDGKAKKYSH--------------SNSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcc-eEEEEEECCeEccccC--------------CCceEEECccCHHHCEEEEEEEEeCCc
Confidence            4468899999999998543332 6899999997664211              124799999999999999999999887


Q ss_pred             cEE
Q psy1095         253 EVV  255 (325)
Q Consensus       253 ~~~  255 (325)
                      ...
T Consensus        73 ~~~   75 (83)
T cd05753          73 DYS   75 (83)
T ss_pred             eec
Confidence            543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.12  E-value=1.9e-10  Score=76.64  Aligned_cols=71  Identities=20%  Similarity=0.206  Sum_probs=54.3

Q ss_pred             CceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeC--CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          73 HNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPA--TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      ....+.+|+.+.|.|.. .+.|.+.+.|++++.++  ....+..+..  ..+.|.|.+++..|+|.|+|.++|...
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEeccc
Confidence            34568899999999986 56899999999998754  2223333332  224699999999999999999988653

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.11  E-value=5.7e-10  Score=74.56  Aligned_cols=70  Identities=21%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             EecCCCeEEEEEEEEecCCCeeEEeeCCeeC-C-------------CCCcEEEEe---cCCeEEEEEccCCCCCCeEEEE
Q psy1095          76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA-T-------------PNARVTIRE---KEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~-~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      .+.+|++|+|+|.+.+.+.+.+.|++++... .             ..+++....   ..+...|.|.+++.+|+|.|+|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4678999999999988889999999765321 1             112222222   3345679999999999999999


Q ss_pred             EEEeCCe
Q psy1095         139 KVENNYG  145 (325)
Q Consensus       139 ~~~~~~~  145 (325)
                      .+.+..+
T Consensus        83 ~v~~~~~   89 (94)
T cd07690          83 EVEDKKE   89 (94)
T ss_pred             EECCccc
Confidence            9977654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.10  E-value=1.5e-09  Score=72.57  Aligned_cols=78  Identities=18%  Similarity=0.279  Sum_probs=55.9

Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCe--eC----CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE-eCCeeE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGK--PA----TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE-NNYGSV  147 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~--~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~  147 (325)
                      +.+.+|+++.|.|.. +.|.|.+.||+++.  ..    ....++...  +  ..|.|.+++.+|+|.|+|.+. +..+..
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--E--RGLLLRSLQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe--c--CeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence            457889999999996 47889999998432  11    112233322  1  349999999999999999997 455556


Q ss_pred             EEEEEEEEEC
Q psy1095         148 EATARLEIMD  157 (325)
Q Consensus       148 ~~~~~l~v~~  157 (325)
                      ...+.|+|..
T Consensus        81 ~~~~~l~v~~   90 (91)
T cd05871          81 LAKYTLHVIE   90 (91)
T ss_pred             EEEEEEEEec
Confidence            6677777753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.10  E-value=3e-09  Score=71.03  Aligned_cols=71  Identities=14%  Similarity=0.246  Sum_probs=55.6

Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC--------CCCCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA--------TPNARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .++++.+|+++.|.|.+.+.....+.|++.+..+        ....|+.... .+...+|.|.+++.+|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            4577899999999999988766678888765332        2455777665 455678999999999999999999653

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.09  E-value=5.8e-10  Score=69.27  Aligned_cols=62  Identities=37%  Similarity=0.629  Sum_probs=49.6

Q ss_pred             CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      +|++++|.|.+.+.+.+.+.|++++..+..  .....  .....|.|.+++..|+|.|+|.+.+..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            588999999988888899999999988762  22211  233479999999999999999998754

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.07  E-value=7e-10  Score=69.27  Aligned_cols=61  Identities=36%  Similarity=0.577  Sum_probs=46.9

Q ss_pred             CCeEEEEEEE-EecCCCeeEEeeCCeeCCCCCcEEEEecCCeE--EEEEccCCCCCCeEEEEEE
Q psy1095          80 GDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIREKEDLR--FLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        80 g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~  140 (325)
                      |++++|.|.+ .+.+.+.+.|++++..................  .|.|.+++.+|+|.|+|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 66778899999998876554433333333221  3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.06  E-value=2.1e-09  Score=71.13  Aligned_cols=77  Identities=19%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             CCeEEEEEEEEecC--CCeeEEeeCCeeCCCC---Cc---EEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          80 GDTVRFQCSVTGQP--APWTSWSKDGKPATPN---AR---VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        80 g~~v~l~C~~~~~p--~~~v~W~~~~~~~~~~---~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      |+++.|.|.+.+.+  ...+.|..++......   ..   ..........+|.|.+++..|+|.|+|.+.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78999999998755  4577998877543211   11   0001122346799999999999999999999888877778


Q ss_pred             EEEEE
Q psy1095         152 RLEIM  156 (325)
Q Consensus       152 ~l~v~  156 (325)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.04  E-value=1.7e-09  Score=72.20  Aligned_cols=70  Identities=21%  Similarity=0.294  Sum_probs=51.9

Q ss_pred             eEecCCCeEEEEEEE-E----ecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          75 KICDLGDTVRFQCSV-T----GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~-~----~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      ..+.+|.+..|.|.- .    ..+.+.++|||++.++...........+ ...|.|.++..+|+|.|+|.+.+..+
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~-~~~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG-STYLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC-CCEEEEEEcChhhCEEEEEEEEEeeC
Confidence            457789999999972 2    2356799999999998754422222122 23599999999999999999988654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.03  E-value=6e-10  Score=74.07  Aligned_cols=70  Identities=17%  Similarity=0.196  Sum_probs=55.5

Q ss_pred             CCceEecCCCeEEEEEE-EEecCCCeeEEeeCCee-CCCCCcEEEEecCCeEEEEEccCCCCCCe-EEEEEEEeCC
Q psy1095          72 PHNKICDLGDTVRFQCS-VTGQPAPWTSWSKDGKP-ATPNARVTIREKEDLRFLEISEVTLEDAG-LYTIKVENNY  144 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~-~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~  144 (325)
                      .....+.+|+.+.|.|. ..|.|.|.+.|++++.. +....+..+..+   +.|.|.+++..|.| .|.|.+.+..
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~---GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN---GNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC---ceEEEEEEehhhCCCCeEEEEEccc
Confidence            45677999999999997 58899999999987644 333445544433   46999999999999 8999998765

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.03  E-value=9e-10  Score=73.40  Aligned_cols=74  Identities=20%  Similarity=0.299  Sum_probs=53.3

Q ss_pred             CeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...+.+|+.+.|.|... +.|.  +.+.|++++..+......+......      .+.|.|.+++.+|+|.|.|.|+|..
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~~d~r~~~~~~------~G~L~fs~v~~~D~g~Y~C~A~n~~   83 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIPEDGRRFVSQT------NGNLYIAKVEASDRGNYSCFVSSPS   83 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCC--CEEEEEECCcccccccCCCeEEeCC------CCcEEEeecCHhhCceeEEEEEecc
Confidence            45688899999999764 5555  8999999986542211112222221      2489999999999999999999976


Q ss_pred             CcE
Q psy1095         252 GEV  254 (325)
Q Consensus       252 ~~~  254 (325)
                      ...
T Consensus        84 ~~~   86 (96)
T cd05727          84 STK   86 (96)
T ss_pred             cCC
Confidence            543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.03  E-value=2.7e-09  Score=69.53  Aligned_cols=78  Identities=19%  Similarity=0.343  Sum_probs=58.7

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE-eCCeeEEEEEE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE-NNYGSVEATAR  152 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~  152 (325)
                      ..++.+|+++.|.|...+. .+.+.|++++..+....++.....+    |.|..++..|+|.|.|.+. +.+...-.+..
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~   79 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEEEGFQQLVASYS   79 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEecCCCeEEEEEEE
Confidence            5678899999999998764 5689999999998766666554443    8899999999999999986 33333344555


Q ss_pred             EEEE
Q psy1095         153 LEIM  156 (325)
Q Consensus       153 l~v~  156 (325)
                      |.|.
T Consensus        80 l~v~   83 (85)
T cd05872          80 LNVV   83 (85)
T ss_pred             EEEe
Confidence            5543

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.02  E-value=3.7e-09  Score=69.24  Aligned_cols=70  Identities=39%  Similarity=0.712  Sum_probs=54.0

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC-
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG-  252 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-  252 (325)
                      ..+.+|+.+.|.|.+.+.|.  ..+.|++++..+....         +       .+.+.++..+|.|.|+|.+.+..+ 
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~---------~-------~~~~~~~~~~~~g~y~C~~~~~~~~   70 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPP--PQVQWYKNGSPINSSQ---------N-------GLFIPNVSPEDSGNYTCRASNGSGS   70 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSS--SEEEEEETTEEEEEES---------S-------EEEESSEEGGGTEEEEEEEEETTEE
T ss_pred             eEEeCCCcEEEEEEEEcccc--eeeeeeeeeeeeeeee---------e-------eeeeeeeccccCEEEEEEEEeCCCC
Confidence            56889999999999997777  8999999987776221         1       277788999999999999999654 


Q ss_pred             cEEeEEEEE
Q psy1095         253 EVVTSACLI  261 (325)
Q Consensus       253 ~~~~~~~l~  261 (325)
                      ..+..+.|.
T Consensus        71 ~~s~~~~v~   79 (80)
T PF13895_consen   71 NTSTSVNVT   79 (80)
T ss_dssp             EEEEEEEEE
T ss_pred             eEeeeEEee
Confidence            333444444

...

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.01  E-value=2.8e-09  Score=66.13  Aligned_cols=63  Identities=30%  Similarity=0.605  Sum_probs=48.8

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +|+.+.|.|.+.+.+.  +.+.|++++..+. . ..  ....      ....|.|.++...|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~-~-~~--~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPV--PNITWLKDGKPLP-E-SN--RLSA------SGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCC--CeEEEEECCEECC-C-CC--EEec------CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            4789999999877777  7899999988776 1 11  1111      225899999999999999999988754

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.01  E-value=1.2e-08  Score=68.02  Aligned_cols=83  Identities=16%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             ceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCCcEEEEecC-----CeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKE-----DLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      ...+.+|+++.|.|.+.++|.|. +.|.+++..+...........+     -...|.+.++..+|.|.|+|.+.|.....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            45689999999999999999997 9999988766433221122211     13569999999999999999999998877


Q ss_pred             EEEEEEEEE
Q psy1095         148 EATARLEIM  156 (325)
Q Consensus       148 ~~~~~l~v~  156 (325)
                      ...+.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            777777653

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PHA03376 BARF1; Provisional

Probab=99.00  E-value=8.1e-09  Score=75.47  Aligned_cols=123  Identities=19%  Similarity=0.269  Sum_probs=74.4

Q ss_pred             ceEecCCCeEEEEEEEEe---cCCCeeEEeeCCe----eC-------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          74 NKICDLGDTVRFQCSVTG---QPAPWTSWSKDGK----PA-------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~---~p~~~v~W~~~~~----~~-------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      ++.+..|+.+.|+|....   .+.-.|.|+|.+.    -+             ....++.+..+.++.+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            455778999999999752   2445789999431    10             011233333445778899999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC
Q psy1095         134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN  204 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~  204 (325)
                      |.|+|.++.......+.-.|.+..+      ..............-+...+.|.+.|+|.  |.+.|..+.
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~~------~~Lsv~a~~~dFp~~~~~~i~C~sggfP~--P~~~Wle~~  162 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVKP------LTLSVHSERSQFPDFSVLTVTCTVNAFPH--PHVQWLMPE  162 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeeec------ceEEEEeccccCCCCCeeEEEEecCCcCC--chheecccc
Confidence            9999999754432222223332221      01111110011112456789999777887  899998654

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.98  E-value=6.8e-09  Score=69.38  Aligned_cols=79  Identities=16%  Similarity=0.291  Sum_probs=53.4

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeCCE--EeccC--CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE-
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNR--LIKLD--SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA-  248 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-  248 (325)
                      +.+.+|+.+.|.|.. +.|.  +.+.|++.+.  .....  ......  .      ....|.|.+++.+|+|.|.|.+. 
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~--p~v~Wykq~~g~~~~~~~~~~~r~~--~------~~~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQ--ASVKWLFQRGGDQRKEEVKTEERLI--H------TERGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCC--ceEEEEEECCCCCccccccccccEE--E------ecCeEEEeeCChhHCEEEEEEEEc
Confidence            356789999999986 3555  8999998432  21110  011111  1      22469999999999999999998 


Q ss_pred             eCCCcEEeEEEEEEE
Q psy1095         249 NELGEVVTSACLIVD  263 (325)
Q Consensus       249 ~~~~~~~~~~~l~v~  263 (325)
                      +..+.....+.|.|+
T Consensus        75 ~~~~~~~~~~~l~v~   89 (91)
T cd05871          75 HSFSQTLAKYTLHVI   89 (91)
T ss_pred             cCCeEEEEEEEEEEe
Confidence            466666667777764

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.97  E-value=3.9e-09  Score=70.54  Aligned_cols=77  Identities=18%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCce------------EEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP------------EVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+.+|+.|+|.|.+.+.+.  +.+.|++++.....+.....            ..... ........|.|.+++.+|+|.
T Consensus         3 ~~~~G~~VtL~C~~s~~~~--~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           3 LGKKGDTAELPCTASQKKS--IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCC--cEEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEE
Confidence            4678999999999987776  88999976643211111110            00010 001134679999999999999


Q ss_pred             EEEEEEeCCCcE
Q psy1095         243 FTCRVANELGEV  254 (325)
Q Consensus       243 Y~C~~~~~~~~~  254 (325)
                      |.|.+.|..++.
T Consensus        80 Y~C~v~~~~~~~   91 (94)
T cd07690          80 YICEVEDKKEEV   91 (94)
T ss_pred             EEEEECCccceE
Confidence            999998876654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.97  E-value=5.1e-09  Score=70.05  Aligned_cols=80  Identities=20%  Similarity=0.341  Sum_probs=56.2

Q ss_pred             ceEecCCCeEEEEEEEE-----------ecCCCeeEEeeCCeeCCCCCc-----EEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095          74 NKICDLGDTVRFQCSVT-----------GQPAPWTSWSKDGKPATPNAR-----VTIREKEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~-----------~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      ...+.+|+.+.|.|...           ..+...+.|||++..+.....     .++...+  ..|.|.++..+|+|.|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~eDSG~Y~   86 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAELQDSGLYT   86 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCChhhCeEEE
Confidence            35688999999999961           122347999999755433221     1222222  36999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEE
Q psy1095         138 IKVENNYGSVEATARLEI  155 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v  155 (325)
                      |.+.|......-++.|+|
T Consensus        87 C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          87 CVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEECCCCcceEEEEEEEC
Confidence            999998776666665553

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.96  E-value=7.7e-09  Score=66.40  Aligned_cols=69  Identities=17%  Similarity=0.316  Sum_probs=51.0

Q ss_pred             cEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       181 ~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      .++|+|...+..|+ +.++||+++.++.....    ....+..+...+.|.+.....+|.+.|+|.|.|..+..
T Consensus         1 ~~~L~C~s~~skP~-a~i~W~k~~~~l~~~~~----~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPA-ATLRWYRDRKELKGVIS----QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCC-CeEEEEECCEECCCCcc----cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            37899998754443 89999999999864321    11233334456789999999999999999999987643

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>smart00409 IG Immunoglobulin

Probab=98.95  E-value=2.5e-08  Score=66.02  Aligned_cols=82  Identities=28%  Similarity=0.621  Sum_probs=61.2

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeC-CEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...+..|+.+.|.|.+.+.+.  +.+.|+++ +..+.........  ...    ....|.|.+++..|+|.|.|.+.+..
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v~~~~~~~~~--~~~----~~~~l~i~~~~~~d~G~Y~C~v~~~~   74 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLLAESGRFSVS--RSG----SNSTLTISNVTPEDSGTYTCAATNSS   74 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEcCCCCcEEEE--EcC----CeeEEEEEeeccccCeEEEEEEEcCC
Confidence            345678999999999988755  89999998 7666533332221  221    14689999999999999999999888


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                      +.....+.|.|
T Consensus        75 ~~~~~~~~l~V   85 (86)
T smart00409       75 GSASSTTTLTV   85 (86)
T ss_pred             CeEEEEEEEEE
Confidence            87776666654

>smart00410 IG_like Immunoglobulin like

Probab=98.95  E-value=2.5e-08  Score=66.02  Aligned_cols=82  Identities=28%  Similarity=0.621  Sum_probs=61.2

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeC-CEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...+..|+.+.|.|.+.+.+.  +.+.|+++ +..+.........  ...    ....|.|.+++..|+|.|.|.+.+..
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v~~~~~~~~~--~~~----~~~~l~i~~~~~~d~G~Y~C~v~~~~   74 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLLAESGRFSVS--RSG----SNSTLTISNVTPEDSGTYTCAATNSS   74 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEcCCCCcEEEE--EcC----CeeEEEEEeeccccCeEEEEEEEcCC
Confidence            345678999999999988755  89999998 7666533332221  221    14689999999999999999999888


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                      +.....+.|.|
T Consensus        75 ~~~~~~~~l~V   85 (86)
T smart00410       75 GSASSTTTLTV   85 (86)
T ss_pred             CeEEEEEEEEE
Confidence            87776666654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.95  E-value=5.7e-09  Score=69.66  Aligned_cols=75  Identities=17%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             eeEecCCcEEEEEEE-Eec--CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         174 LRCCDGDSVTFECQV-QVV--PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~-~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      ..+.+|....|.|.- .++  +...+.+.|+|++.++.........  ..+     ...|.|.++..+|+|.|+|.+.+.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~--~~~-----~~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS--LKG-----STYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe--cCC-----CCEEEEEEcChhhCEEEEEEEEEe
Confidence            345678899999963 223  2233789999999987644321111  111     136999999999999999999998


Q ss_pred             CCcEE
Q psy1095         251 LGEVV  255 (325)
Q Consensus       251 ~~~~~  255 (325)
                      .+...
T Consensus        78 ~~g~~   82 (95)
T cd05897          78 HEGKK   82 (95)
T ss_pred             eCCEE
Confidence            76554

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>KOG3515|consensus

Probab=98.93  E-value=2.5e-08  Score=89.15  Aligned_cols=299  Identities=12%  Similarity=0.056  Sum_probs=162.8

Q ss_pred             eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCcc------cccccccccc--cccCCCC-eeEecCCceEecCCCe
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFT------PYSLNSAIRT--RRLTSSP-RFYAVPHNKICDLGDT   82 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~------c~~~~~~~~~--~~~~~~p-~~~~~~~~~~v~~g~~   82 (325)
                      .+.|.++.....-.+-..-.+..-.+.+....+.|.+.      |.+.+.....  ..+..+| ...+.+....+..|..
T Consensus       238 ~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s  317 (741)
T KOG3515|consen  238 QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRS  317 (741)
T ss_pred             hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccc
Confidence            34555555544443333333444455555555666665      9988722221  2222223 2223344445778999


Q ss_pred             EEEEEEEE-ecCCCeeEEeeCCeeCCCCCcE----EEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE--EEEEEE
Q psy1095          83 VRFQCSVT-GQPAPWTSWSKDGKPATPNARV----TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA--TARLEI  155 (325)
Q Consensus        83 v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~v  155 (325)
                      ..+.|... ++|...+.|+++..........    ..........+.+......|.|.|+|.+.+.......  ...+.+
T Consensus       318 ~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~  397 (741)
T KOG3515|consen  318 ARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPV  397 (741)
T ss_pred             cccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccc
Confidence            99999865 4677889999965433221111    1011111233556777889999999999776543322  233344


Q ss_pred             ECCCcccCCCeeeecCcC-eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         156 MDPRAIISRPKVLNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       156 ~~~~~~~~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ...      |.++..... ....+.+.....-.+.++|.. ..+.|.+.+.++.............+      ....+-+
T Consensus       398 l~~------p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~-~~~~w~~~~~~~~~~~g~~~~v~~~~------~~~s~~~  464 (741)
T KOG3515|consen  398 LPS------PAFLVRHKTAVVAMEQDHQAAPLPVRGAPAE-RTFYWTFRLYKLSQVDGGVVRVGAGA------GLGSGVN  464 (741)
T ss_pred             cCC------chhhhhcccceeeccCccccccCcccCCCcc-cchhheecceecccccCceEEeeccc------cccccce
Confidence            333      333322222 222334444444444455543 78999998887765544333322222      3344667


Q ss_pred             CCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCe------ecC-CCCce-------------------------------
Q psy1095         235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK------DLT-SDGRL-------------------------------  276 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~------~~~-~~~~~-------------------------------  276 (325)
                      +...|.|.|.|.++|..|.......+.+-..+..      .+. .++..                               
T Consensus       465 v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~  544 (741)
T KOG3515|consen  465 VSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQ  544 (741)
T ss_pred             eeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccc
Confidence            8999999999999999998877666444221110      000 00000                               


Q ss_pred             --EEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         277 --NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       277 --~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                        ..........+.+.......+|.|.|.+.|..--+.....|++...+
T Consensus       545 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~  593 (741)
T KOG3515|consen  545 DAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSAL  593 (741)
T ss_pred             cccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccc
Confidence              00011112356777777777899999999933344455566665544

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.92  E-value=1.8e-09  Score=67.38  Aligned_cols=63  Identities=37%  Similarity=0.658  Sum_probs=42.7

Q ss_pred             CCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         179 GDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       179 g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      |+.++|.|.+ .+.++  ..+.|++++............  ..+  ......|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~--~~~--~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPP--TTVTWSKNGQSLPEGSTTNRS--TNS--VSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSST--SEEEEEETTTTTSEEEEEEEE--ETT--TEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCC--cEEEEEECCccccCcceeEee--ccc--ceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 44444  899999987755432211111  111  111124999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.91  E-value=1.3e-08  Score=71.04  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=56.8

Q ss_pred             EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCee---C-----------CCCCcEEEEec--CCeEEEEEccCCCCC
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP---A-----------TPNARVTIREK--EDLRFLEISEVTLED  132 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~---~-----------~~~~~~~~~~~--~~~~~l~i~~~~~~d  132 (325)
                      ...|....+.+|++|+|.|.+.+.+...+.||+....   .           ....++.+...  .....|.|.+++.+|
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD   81 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence            3456677899999999999998777788999985321   0           12345554432  356789999999999


Q ss_pred             CeEEEEEEEeCC
Q psy1095         133 AGLYTIKVENNY  144 (325)
Q Consensus       133 ~G~Y~C~~~~~~  144 (325)
                      +|.|.|.+.+..
T Consensus        82 sG~Y~C~~~~~~   93 (109)
T cd04983          82 SAVYFCALSESG   93 (109)
T ss_pred             CEEEEEEEecCC
Confidence            999999997643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.91  E-value=2e-08  Score=68.13  Aligned_cols=83  Identities=18%  Similarity=0.314  Sum_probs=53.6

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEecc-C-----CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL-D-----SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR  246 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  246 (325)
                      ...+.+|+.+.|.|.+.+.+.  +.+.|++.+..+.. .     ...+......   ......|.|.+++.+|+|.|.|.
T Consensus         6 ~~~v~~G~~v~L~C~~~~~~~--~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           6 DVTVVEGGTATLKCRVKNNDN--SSLQWSNPNQQTLYFNDKRALRDNRIQLVNF---SANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             cEEEcCCCCEEEEEEECCCCC--ceEEEeCCCCcEEEeccccccccCcEEEEcC---CCCeeEEEEccCCcccCEEEEEE
Confidence            556889999999999987665  78999864332110 0     0011111000   01235799999999999999999


Q ss_pred             EEeCCCcEEeEEEEE
Q psy1095         247 VANELGEVVTSACLI  261 (325)
Q Consensus       247 ~~~~~~~~~~~~~l~  261 (325)
                      +..... ....+.|.
T Consensus        81 ~~~~~~-~~~~~~~~   94 (95)
T cd05717          81 LYTMPV-QTAKATVT   94 (95)
T ss_pred             EecCCC-ceEEEEEE
Confidence            987653 34455454

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.90  E-value=7.4e-09  Score=66.50  Aligned_cols=62  Identities=15%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             EEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEecC----CeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          83 VRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKE----DLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        83 v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      +.|+|... +.|.+.++||++++++......  ...+    ...+|.|.....+|.+.|+|++.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~--~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ--QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCccc--ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            78999985 4899999999999999653211  1111    1246889899999999999999997653

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.89  E-value=2.3e-08  Score=68.41  Aligned_cols=83  Identities=22%  Similarity=0.176  Sum_probs=54.9

Q ss_pred             EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCee-----C----CC----------CCcEEEEecCCeEEEEEccCC
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-----A----TP----------NARVTIREKEDLRFLEISEVT  129 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~-----~----~~----------~~~~~~~~~~~~~~l~i~~~~  129 (325)
                      ++++.+..+.+|++|.|.|.....+...++|||....     +    ..          ..|..+..   ..+|.|.+++
T Consensus         2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~---ngSL~I~~v~   78 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP---NGSLLIQNVT   78 (105)
T ss_pred             eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC---CCcEEEecCC
Confidence            3455666788999999999754333448999996321     1    00          12222222   2469999999


Q ss_pred             CCCCeEEEEEEEeCC-eeEEEEEEEE
Q psy1095         130 LEDAGLYTIKVENNY-GSVEATARLE  154 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~-~~~~~~~~l~  154 (325)
                      ..|+|.|+|.+.+.. ......+.|.
T Consensus        79 ~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          79 QKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             cccCEEEEEEEEeCCccEEEEEEEEE
Confidence            999999999998866 3444454443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.88  E-value=5.7e-09  Score=69.44  Aligned_cols=72  Identities=19%  Similarity=0.349  Sum_probs=54.0

Q ss_pred             cCeeEecCCcEEEEEE-EEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe-EEEEEEEe
Q psy1095         172 ENLRCCDGDSVTFECQ-VQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG-EFTCRVAN  249 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~-~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~  249 (325)
                      ....+.+|+.+.|.|. ..|.|.  +.+.|++++...... ..+.....+       +.|.|.+++.+|+| .|.|.|.|
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~--P~i~W~~~~~~~i~~-~~Ri~~~~~-------GnL~fs~v~~~D~g~~Y~C~a~~   80 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVP--LRIYWMNSDLLHITQ-DERVSMGQN-------GNLYFANVEEQDSHPDYICHAHF   80 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCC--CEEEEECCCCccccc-cccEEECCC-------ceEEEEEEehhhCCCCeEEEEEc
Confidence            4567899999999997 578887  899999876543222 222222233       48999999999999 89999998


Q ss_pred             CCCc
Q psy1095         250 ELGE  253 (325)
Q Consensus       250 ~~~~  253 (325)
                      ....
T Consensus        81 ~~~~   84 (95)
T cd05845          81 PGLR   84 (95)
T ss_pred             cccc
Confidence            7643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.87  E-value=1.9e-08  Score=70.18  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=54.6

Q ss_pred             EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe--eC----------------CCCCcEEEEecC-CeEEEEEccCC
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK--PA----------------TPNARVTIREKE-DLRFLEISEVT  129 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~--~~----------------~~~~~~~~~~~~-~~~~l~i~~~~  129 (325)
                      .+.|....+.+|++++|.|...+ +.+.+.|||...  ..                ....++...... ....|.|.+++
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~   80 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE   80 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence            45677788999999999999977 677899998532  11                012344443332 45789999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy1095         130 LEDAGLYTIKVENN  143 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~  143 (325)
                      .+|+|.|.|.+.+.
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          81 PEDSAVYLCASSLG   94 (110)
T ss_pred             hhhCEEEEEEeeCC
Confidence            99999999998654

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.86  E-value=1.7e-08  Score=67.70  Aligned_cols=74  Identities=20%  Similarity=0.304  Sum_probs=55.6

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .|.+...|.. .|.+|++|+|.|... .+...+.|+|+|...... .  .........+.|.+++.+|+|.|+|...+.
T Consensus         2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4677777754 588999999999875 567789999998754321 1  111233456999999999999999999775

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.85  E-value=4.3e-08  Score=64.40  Aligned_cols=76  Identities=22%  Similarity=0.404  Sum_probs=51.0

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC  259 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  259 (325)
                      +.|.|.+.+..|. +.+.|++++..+..... ......++......+.|.+.....+|.|.|+|.|.|..........
T Consensus         2 ~~L~C~v~g~~P~-~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s   77 (82)
T cd05759           2 YNLTCRARGAKPA-AEIIWFRDGEVLDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETS   77 (82)
T ss_pred             EEEEEEEeCccCC-CEEEEEECCEEccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEE
Confidence            6899999885333 79999999988754321 1111122333334568888888888999999999987654443333

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.84  E-value=3.3e-08  Score=68.52  Aligned_cols=75  Identities=17%  Similarity=0.260  Sum_probs=54.9

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecC-CCeeEEeeCC--ee---C---------CCCCcEEEEecCCeEEEEEccCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSKDG--KP---A---------TPNARVTIREKEDLRFLEISEVTLED  132 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d  132 (325)
                      +.+.|....+.+|++|+|.|.+.+.. ...+.|||..  +.   +         ....++..........|.|.+++.+|
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            45667778899999999999987654 5679999743  11   0         01134554444456779999999999


Q ss_pred             CeEEEEEEEe
Q psy1095         133 AGLYTIKVEN  142 (325)
Q Consensus       133 ~G~Y~C~~~~  142 (325)
                      +|.|.|.+.+
T Consensus        83 sg~Y~Ca~~~   92 (106)
T cd04980          83 AAVYYCQQYG   92 (106)
T ss_pred             CEEEEEEEeC
Confidence            9999999854

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.83  E-value=3.2e-08  Score=66.33  Aligned_cols=73  Identities=18%  Similarity=0.271  Sum_probs=52.2

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.+...+ ...|..|+.|+|.|... .+.  ..+.|+++|.........     ..+    ..+.+.|.+++.+|+|.|+
T Consensus         3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~--~~f~l~k~g~~~~~~~~~-----~~~----~~~~f~i~~v~~~~~G~Y~   69 (91)
T cd05751           3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGA--VEYRLYREGSTFAVKKPP-----EPQ----NKAKFFIPSMKREHAGRYR   69 (91)
T ss_pred             CEEEecC-CCccCCCCcEEEEEecC-CCC--CEEEEEECCCCccccccC-----CCc----eeEEEEccCCChhHCEEEE
Confidence            4444444 34678999999999885 333  689999998754321110     111    3468999999999999999


Q ss_pred             EEEEeC
Q psy1095         245 CRVANE  250 (325)
Q Consensus       245 C~~~~~  250 (325)
                      |.+.+.
T Consensus        70 C~~~~~   75 (91)
T cd05751          70 CYYRSG   75 (91)
T ss_pred             EEEECC
Confidence            999876

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.81  E-value=4.3e-08  Score=69.19  Aligned_cols=73  Identities=15%  Similarity=0.270  Sum_probs=54.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEe--cCCCeeEEeeCC--eeC-----------------CCCCcEEEEecC--CeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTG--QPAPWTSWSKDG--KPA-----------------TPNARVTIREKE--DLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~--~~~-----------------~~~~~~~~~~~~--~~~~l~i~  126 (325)
                      +.|..+.+.+|++|+|.|.+.+  .+.+.+.||+..  ...                 ....++.+....  ....|.|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            4456677889999999999877  567789999842  110                 012355554444  56789999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy1095         127 EVTLEDAGLYTIKVEN  142 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~  142 (325)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999854

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.81  E-value=1.2e-07  Score=66.21  Aligned_cols=82  Identities=20%  Similarity=0.246  Sum_probs=52.4

Q ss_pred             CeeEecCCcEEEEEEEEecCC--CCCeeEEee---------------CCEEec-cCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPP--NDHDISWFR---------------NNRLIK-LDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~--~~~~~~W~~---------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ...+..|+.+.|.|.......  ....+.|.+               ++.... ....++.+....+.......++.|.+
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            456788999999999976431  236899943               222211 01111112222222233568999999


Q ss_pred             CCCCCCeEEEEEEEeCCCcE
Q psy1095         235 VYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      ++.+|.|.|+|.+.|.....
T Consensus        87 v~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          87 LDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             CCcccCEEEEEEEEcCCCcC
Confidence            99999999999999876533

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.79  E-value=4.9e-08  Score=65.39  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=57.2

Q ss_pred             CeeEecCCcEEEEEEEEe------cC---CCCCeeEEeeCCEEeccCCCCc---eEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQV------VP---PNDHDISWFRNNRLIKLDSDMK---PEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~------~~---~~~~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      ...+.+|+.+.|.|....      ++   .+...+.|+|++..+.......   .+....+      ..|.|.++..+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~------~~Lwf~Pa~~eDS   82 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE------DSIWFRPAELQDS   82 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC------CEEEEEeCChhhC
Confidence            356788999999998621      11   1115799999975554333111   1212222      5899999999999


Q ss_pred             eEEEEEEEeCCCcEEeEEEEEE
Q psy1095         241 GEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |.|+|.+.|........+.|+|
T Consensus        83 G~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          83 GLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             eEEEEEECCCCcceEEEEEEEC
Confidence            9999999998877776666653

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.79  E-value=6.7e-08  Score=63.50  Aligned_cols=64  Identities=17%  Similarity=0.311  Sum_probs=45.4

Q ss_pred             eEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEE-EEecCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          82 TVRFQCSVTG-QPAPWTSWSKDGKPATPNARVT-IREKED----LRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        82 ~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      .+.|.|.+.| .|.+.++|++++..+....... ....+.    ...|.+.....+|.|.|+|.+.|...
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l   70 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL   70 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence            3689999987 6888999999999875432111 111111    23577877777888999999988654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.79  E-value=8.7e-08  Score=66.38  Aligned_cols=78  Identities=23%  Similarity=0.341  Sum_probs=53.2

Q ss_pred             CCCeEEEEEEEEecC------------CCeeEEeeCCe--e---C---------CC--CCcEEEEe---cCCeEEEEEcc
Q psy1095          79 LGDTVRFQCSVTGQP------------APWTSWSKDGK--P---A---------TP--NARVTIRE---KEDLRFLEISE  127 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p------------~~~v~W~~~~~--~---~---------~~--~~~~~~~~---~~~~~~l~i~~  127 (325)
                      .|++|+|.|.+....            .+.|.|+|...  .   +         ..  ..|+.+..   ..+..+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999986432            46899998421  0   0         00  12444432   33567899999


Q ss_pred             CCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095         128 VTLEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      ++.+|+|.|.|.+.+........+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999998765555555666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.77  E-value=1.1e-08  Score=66.09  Aligned_cols=74  Identities=31%  Similarity=0.476  Sum_probs=50.7

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecC-CCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      +|.|...+.......+. +.|.|.+.+.+ .+.++|+ .......  ............|.|.++..+|.|.|+|.+.|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            47777777776555444 99999998866 8899999 1111100  11111122345799999999999999999976

...

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.76  E-value=6.9e-08  Score=62.94  Aligned_cols=64  Identities=23%  Similarity=0.379  Sum_probs=49.7

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      ...+..|+++.|.|...+. .  +.+.|++++..+..+.+  ......        .|.|..++.+|+|.|.|.+.-
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~--A~v~W~~ng~~l~~~~r--~~~~~~--------GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-L--ASPVWLFNGTPLNAQFS--YRVGTD--------GLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-C--ccEEEEECCcccCCCcc--eEEeCC--------CCEEEECCHhhCEEEEEEEec
Confidence            4568889999999998764 3  68999999998865432  222233        388999999999999999873

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.76  E-value=1.5e-07  Score=64.48  Aligned_cols=76  Identities=22%  Similarity=0.303  Sum_probs=50.9

Q ss_pred             CCeEEEEEEEEecC---CCeeEEeeCCe--e---------CCC------CCcEEEEe---cCCeEEEEEccCCCCCCeEE
Q psy1095          80 GDTVRFQCSVTGQP---APWTSWSKDGK--P---------ATP------NARVTIRE---KEDLRFLEISEVTLEDAGLY  136 (325)
Q Consensus        80 g~~v~l~C~~~~~p---~~~v~W~~~~~--~---------~~~------~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y  136 (325)
                      |++|+|+|.+....   ...+.|++...  .         ...      ..++.+..   ..+..+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78899999986321   23678887541  1         110      02333221   13457899999999999999


Q ss_pred             EEEEEeCCeeEEEEEEEEE
Q psy1095         137 TIKVENNYGSVEATARLEI  155 (325)
Q Consensus       137 ~C~~~~~~~~~~~~~~l~v  155 (325)
                      +|.+.+..+..+..+.|+|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776677777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.75  E-value=1.7e-07  Score=65.00  Aligned_cols=79  Identities=27%  Similarity=0.441  Sum_probs=54.7

Q ss_pred             CCCeEEEEEEEEecC------CCeeEEeeCC---e---eC--CCC--------CcEEEE---ecCCeEEEEEccCCCCCC
Q psy1095          79 LGDTVRFQCSVTGQP------APWTSWSKDG---K---PA--TPN--------ARVTIR---EKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p------~~~v~W~~~~---~---~~--~~~--------~~~~~~---~~~~~~~l~i~~~~~~d~  133 (325)
                      .|++|+|.|.+...+      ...+.|++..   .   .+  ...        .+.++.   ...+..+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            389999999987643      4689999862   1   01  001        111111   123457899999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095         134 GLYTIKVENNYGSVEATARLEIMD  157 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~~  157 (325)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998766667777777754

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.75  E-value=5.9e-08  Score=65.85  Aligned_cols=77  Identities=22%  Similarity=0.334  Sum_probs=56.2

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ..|+.+.|.|.+.++.+..+.+.|+++|..+.............+..+...+.|.+......|.|.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            35889999999999855447899999999886544311222233344556678888887778999999999987653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.74  E-value=7.8e-08  Score=64.77  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      |.+...|.. .+.+|++|+|.|.... +...+.|+|++...................+.|..++.+|+|.|.|...
T Consensus         2 P~l~a~p~~-vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSAHPSP-VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CEEEecCCC-ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            666666644 4889999999998764 5567999998865332110000111224468999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.74  E-value=1.6e-07  Score=65.52  Aligned_cols=75  Identities=19%  Similarity=0.274  Sum_probs=51.4

Q ss_pred             cCCceEecCCCeEEEEEEEEec----CCCeeEEee---------------CCeeCC-CC----CcEEEEe--cCCeEEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQ----PAPWTSWSK---------------DGKPAT-PN----ARVTIRE--KEDLRFLE  124 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~----p~~~v~W~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~  124 (325)
                      .+..+.+..|++++|.|.+...    +...+.|.+               ++.... ..    .|.....  ..+..+|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            4556678899999999998653    345889932               233222 11    1333222  23456899


Q ss_pred             EccCCCCCCeEEEEEEEeCCe
Q psy1095         125 ISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      |.+++.+|+|.|+|.+.|...
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCC
Confidence            999999999999999988654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.72  E-value=4e-07  Score=60.85  Aligned_cols=70  Identities=21%  Similarity=0.385  Sum_probs=50.3

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEec--------cCCCCceEEEe-cCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--------LDSDMKPEVQV-DSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      ...+.+|+++.|.|.+.....  ..+.|++.+..+.        .+.++  .... .+    ....|.|.+++.+|+|.|
T Consensus         6 nvtv~~G~ta~L~C~v~~~~~--~~v~w~~~~~~~i~~~~~~~~~d~Rf--~~~~~~~----~~~tL~I~~vq~~D~G~Y   77 (95)
T cd05881           6 DVTVVEGEVAIISCRVKNNDD--SVIQLLNPNRQTIYFRDVRPLKDSRF--QLVNFSS----NELRVSLSNVSLSDEGRY   77 (95)
T ss_pred             ceEEcCCCcEEEEEEEccCCc--cEEEEEecCCcEEEecCccccCCcCE--EEEeCCC----CEEEEEECcCCcccCEEE
Confidence            567889999999999987665  6788887664431        12222  2111 22    356799999999999999


Q ss_pred             EEEEEeC
Q psy1095         244 TCRVANE  250 (325)
Q Consensus       244 ~C~~~~~  250 (325)
                      .|.+...
T Consensus        78 ~Cqv~t~   84 (95)
T cd05881          78 FCQLYTD   84 (95)
T ss_pred             EEEEEcc
Confidence            9999764

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.72  E-value=2.9e-07  Score=63.75  Aligned_cols=85  Identities=22%  Similarity=0.384  Sum_probs=56.0

Q ss_pred             cCCcEEEEEEEEecC----CCCCeeEEeeCC-----E-Eec--cCC------CCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         178 DGDSVTFECQVQVVP----PNDHDISWFRNN-----R-LIK--LDS------DMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~----~~~~~~~W~~~~-----~-~~~--~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      .|++|+|.|.....+    .....+.|++..     . .+.  ...      ..+.+.... ......+.|.|.+++.+|
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD   79 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED   79 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence            388999999987653    123789999862     1 111  111      111111100 012256899999999999


Q ss_pred             CeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         240 EGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|.+.+..+.....+.|.|.
T Consensus        80 ~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          80 SGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CEEEEEEEEcCCCceEEEEEEEEE
Confidence            999999999987777777777774

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.71  E-value=1e-07  Score=65.95  Aligned_cols=70  Identities=20%  Similarity=0.320  Sum_probs=51.2

Q ss_pred             EecCCCeEEEEEEEEec-CCCeeEEeeCCee-----C------------CCCCcEEEEecC--CeEEEEEccCCCCCCeE
Q psy1095          76 ICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKP-----A------------TPNARVTIREKE--DLRFLEISEVTLEDAGL  135 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~-----~------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~  135 (325)
                      .+.+|++++|.|.+... +...+.|++....     +            ....++.+....  ...+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            47789999999999875 6678999985321     0            012344443332  56789999999999999


Q ss_pred             EEEEEEeCCe
Q psy1095         136 YTIKVENNYG  145 (325)
Q Consensus       136 Y~C~~~~~~~  145 (325)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999976553

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.70  E-value=2.1e-07  Score=64.62  Aligned_cols=79  Identities=29%  Similarity=0.454  Sum_probs=54.6

Q ss_pred             CCCeEEEEEEEEecC----------CCeeEEeeCC--eeC------------CC--CCcEEEE---ecCCeEEEEEccCC
Q psy1095          79 LGDTVRFQCSVTGQP----------APWTSWSKDG--KPA------------TP--NARVTIR---EKEDLRFLEISEVT  129 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p----------~~~v~W~~~~--~~~------------~~--~~~~~~~---~~~~~~~l~i~~~~  129 (325)
                      .|++|+|+|.+...+          ...+.|+|..  ...            ..  ..|+.+.   ...+..+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            489999999986543          3578999852  110            00  1233332   12345779999999


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095         130 LEDAGLYTIKVENNYGSVEATARLEIMD  157 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  157 (325)
                      .+|+|.|.|.+.......++.+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999987666667777777754

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.70  E-value=4.9e-08  Score=62.90  Aligned_cols=74  Identities=26%  Similarity=0.432  Sum_probs=47.0

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.+...........+ .+.|.|.+.+.++. +.+.|+ +.......        .........+.|.|.++..+|.|.|+
T Consensus         2 P~I~~~~~~~~~~~~-~~~l~C~~~~~~~~-~~~~W~-~~~~~~~~--------~~~~~~~~~~~L~i~~v~~~~~g~y~   70 (75)
T PF13927_consen    2 PQISVPPPPVVTSGG-SVTLTCSAEGGPPP-PSISWY-DSNPSFNS--------NSRGSSSSNSTLTISNVTRSDNGTYT   70 (75)
T ss_dssp             SEEEEESTSEEETTE-EEEEEEEESSEESS-EEEEEE-TEEEEEEE--------EEEEEEEEEEEEEESSCCGGGTEEEE
T ss_pred             CEEEEcCCCcEeece-eEEEEEEEccccCC-eEEEEE-ecCCceee--------eeeeccceeeEEEEccCCHHhCcEEE
Confidence            444444444333333 39999999888742 899999 11111000        11111224578999999999999999


Q ss_pred             EEEEe
Q psy1095         245 CRVAN  249 (325)
Q Consensus       245 C~~~~  249 (325)
                      |.|.|
T Consensus        71 C~a~N   75 (75)
T PF13927_consen   71 CIASN   75 (75)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99986

...

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.69  E-value=2.6e-07  Score=63.08  Aligned_cols=75  Identities=23%  Similarity=0.389  Sum_probs=50.3

Q ss_pred             CeEEEEEEEEecC---CCeeEEeeCCee---------------CCCC--CcEEEEecC-CeEEEEEccCCCCCCeEEEEE
Q psy1095          81 DTVRFQCSVTGQP---APWTSWSKDGKP---------------ATPN--ARVTIREKE-DLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        81 ~~v~l~C~~~~~p---~~~v~W~~~~~~---------------~~~~--~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                      ++|+|.|.+...+   ...|.|+|....               +...  .+..+.... ...+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4799999987643   346899985421               0111  122211111 456899999999999999999


Q ss_pred             EEe-CCeeEEEEEEEEE
Q psy1095         140 VEN-NYGSVEATARLEI  155 (325)
Q Consensus       140 ~~~-~~~~~~~~~~l~v  155 (325)
                      +.. ..|...+.+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            864 5567777777776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.69  E-value=3e-07  Score=63.72  Aligned_cols=78  Identities=23%  Similarity=0.346  Sum_probs=54.4

Q ss_pred             CCCeEEEEEEEEecC------CCeeEEeeCCee--------CC--------C--CCcEEEEe-cCCeEEEEEccCCCCCC
Q psy1095          79 LGDTVRFQCSVTGQP------APWTSWSKDGKP--------AT--------P--NARVTIRE-KEDLRFLEISEVTLEDA  133 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p------~~~v~W~~~~~~--------~~--------~--~~~~~~~~-~~~~~~l~i~~~~~~d~  133 (325)
                      .|++|+|.|.+...|      ...+.|+|....        +.        .  ..++.+.. ..+..+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999987653      346999985310        00        0  12333321 12346799999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEE
Q psy1095         134 GLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      |.|.|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999998877777777777765

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.66  E-value=1.7e-07  Score=65.35  Aligned_cols=77  Identities=17%  Similarity=0.304  Sum_probs=50.9

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEE------ecc------CCCCceEEEecCCcceeEEEEEeCCCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRL------IKL------DSDMKPEVQVDSKENLVIARLKIPHVYPE  238 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  238 (325)
                      +....+.+|++++|.|.+.+.+.  ..+.|++....      +..      ....+......  .......|.|.+++.+
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~--~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~~~~~   80 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTF--YYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD--KSRKSSSLHISAAQLS   80 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCc--cEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc--ccCCEEEEEECCCCHH
Confidence            34567889999999999986644  78999984321      000      00111111111  1124578999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy1095         239 DEGEFTCRVANEL  251 (325)
Q Consensus       239 d~G~Y~C~~~~~~  251 (325)
                      |+|.|.|.+.+..
T Consensus        81 DsG~Y~C~~~~~~   93 (109)
T cd04983          81 DSAVYFCALSESG   93 (109)
T ss_pred             HCEEEEEEEecCC
Confidence            9999999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.66  E-value=6.4e-07  Score=62.92  Aligned_cols=88  Identities=18%  Similarity=0.299  Sum_probs=59.7

Q ss_pred             eEecCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCe-----eCC----C----------CCcEEEEec--CCeEEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGK-----PAT----P----------NARVTIREK--EDLRFLEI  125 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~-----~~~----~----------~~~~~~~~~--~~~~~l~i  125 (325)
                      +...|..+.+.+|+++.|.|... ......+.|++...     .+.    .          ..++.+...  ....+|.|
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i   83 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI   83 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence            44557778899999999999998 44566899998322     111    0          123332222  34678999


Q ss_pred             ccCCCCCCeEEEEEEEeCC-eeEEEEEEEEE
Q psy1095         126 SEVTLEDAGLYTIKVENNY-GSVEATARLEI  155 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v  155 (325)
                      .+++.+|+|.|.|.+.... ......+.|.|
T Consensus        84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            9999999999999998762 33344455543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.64  E-value=1.5e-07  Score=63.81  Aligned_cols=78  Identities=23%  Similarity=0.376  Sum_probs=52.2

Q ss_pred             cCCCeEEEEEEEEe-cCCCeeEEeeCCeeCC--C-----------CCcE--EEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          78 DLGDTVRFQCSVTG-QPAPWTSWSKDGKPAT--P-----------NARV--TIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        78 ~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~--~-----------~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      ..|++|+|+|.... .....+.|++....+.  .           ..++  +........+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            46999999998754 4445789998642210  0           0111  22223445789999999999999999998


Q ss_pred             eCCee-EEEEEEEEE
Q psy1095         142 NNYGS-VEATARLEI  155 (325)
Q Consensus       142 ~~~~~-~~~~~~l~v  155 (325)
                      ...+. ....+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            76553 355666655

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.63  E-value=6.9e-07  Score=61.89  Aligned_cols=85  Identities=21%  Similarity=0.391  Sum_probs=55.1

Q ss_pred             cCCcEEEEEEEEecC----CCCCeeEEeeCCE------E-e-ccC------CCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         178 DGDSVTFECQVQVVP----PNDHDISWFRNNR------L-I-KLD------SDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~----~~~~~~~W~~~~~------~-~-~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      .|++++|.|.....|    .....+.|++...      . + ...      ..+..+..... .....+.|.|.+++.+|
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D   79 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLED   79 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHH
Confidence            388999999987653    2226799998531      1 0 100      00111111110 01134689999999999


Q ss_pred             CeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         240 EGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|.+.+..+.....+.|.|.
T Consensus        80 sG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          80 YGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             CEEEEEEEEecccceEEEEEEEEE
Confidence            999999999988888888777773

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.63  E-value=2.8e-07  Score=61.98  Aligned_cols=79  Identities=11%  Similarity=0.120  Sum_probs=53.2

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEe-cCCCe--eEEeeCCeeCCCCCcEEE--EecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTG-QPAPW--TSWSKDGKPATPNARVTI--REKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+.+.+.+..+.+|+.++|.|.+.+ .|.+.  ++||+++..+........  .......+|.+.....+|...|+|++.
T Consensus         3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~   82 (100)
T cd05755           3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETE   82 (100)
T ss_pred             eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence            4555666666889999999999976 67776  699999998864321110  111223457766555555559999998


Q ss_pred             eCCe
Q psy1095         142 NNYG  145 (325)
Q Consensus       142 ~~~~  145 (325)
                      +...
T Consensus        83 l~l~   86 (100)
T cd05755          83 LDLR   86 (100)
T ss_pred             eccC
Confidence            7654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.62  E-value=2.8e-07  Score=62.06  Aligned_cols=72  Identities=26%  Similarity=0.336  Sum_probs=48.8

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCCeeCCC------------------CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDGKPATP------------------NARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      |++|+|.|.....+...+.|+++......                  ..++.+.  . ..+|.|.+++.+|+|.|+|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~-~~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--P-NGSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--C-CceEEEccCCchhcEEEEEEEE
Confidence            78999999987656668999986533211                  0122221  2 2679999999999999999997


Q ss_pred             eCCe-eEEEEEEEE
Q psy1095         142 NNYG-SVEATARLE  154 (325)
Q Consensus       142 ~~~~-~~~~~~~l~  154 (325)
                      ...+ .....+.|.
T Consensus        78 ~~~~~~~~~~~~l~   91 (92)
T cd05741          78 STNGVTENAKFFLR   91 (92)
T ss_pred             cCCCcEEEEEEEEE
Confidence            7653 333444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.62  E-value=8.6e-07  Score=61.59  Aligned_cols=86  Identities=21%  Similarity=0.371  Sum_probs=54.8

Q ss_pred             cCCcEEEEEEEEecCC--------CCCeeEEeeCC--EEec----------cCCCCceEEEecC-CcceeEEEEEeCCCC
Q psy1095         178 DGDSVTFECQVQVVPP--------NDHDISWFRNN--RLIK----------LDSDMKPEVQVDS-KENLVIARLKIPHVY  236 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~--------~~~~~~W~~~~--~~~~----------~~~~~~~~~~~~~-~~~~~~~~l~i~~~~  236 (325)
                      .|++++|+|.....+.        ....+.|++..  ....          ....+..+....+ ......+.|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3889999999875442        12679999852  1110          0111111111110 111245789999999


Q ss_pred             CCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         237 PEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      .+|+|.|.|.+..........+.|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999999877777777777663

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.62  E-value=3.7e-07  Score=62.45  Aligned_cols=87  Identities=16%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE-----Eec-cCCCCceEE---EecCC-cceeEEEEEeCCCCCCCCe
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR-----LIK-LDSDMKPEV---QVDSK-ENLVIARLKIPHVYPEDEG  241 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~-----~~~-~~~~~~~~~---~~~~~-~~~~~~~l~i~~~~~~d~G  241 (325)
                      .+..+.+|+++.|.|...  |.....+.|+|...     .+. .........   ...++ .-..+++|.|.+++.+|+|
T Consensus         6 ~p~~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G   83 (105)
T cd05774           6 VPPQVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG   83 (105)
T ss_pred             cCCcccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence            345677899999999653  44335899999522     110 000000000   00111 0112358999999999999


Q ss_pred             EEEEEEEeCCC-cEEeEEEE
Q psy1095         242 EFTCRVANELG-EVVTSACL  260 (325)
Q Consensus       242 ~Y~C~~~~~~~-~~~~~~~l  260 (325)
                      .|+|.+.+... .......|
T Consensus        84 ~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          84 FYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEEEEeCCccEEEEEEEE
Confidence            99999998773 33333333

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.61  E-value=7.4e-07  Score=62.49  Aligned_cols=81  Identities=25%  Similarity=0.404  Sum_probs=49.9

Q ss_pred             cCeeEecCCcEEEEEEEEecCC-C-CCeeEEeeC----CEE--ec-c--------CCCCceEEEecCCcceeEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPP-N-DHDISWFRN----NRL--IK-L--------DSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~-~-~~~~~W~~~----~~~--~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ..+.+.+|+.++|.|.....++ . ...+.|++.    +..  +. .        ..++..+....+......+.|.|.+
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~   85 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ   85 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence            3567889999999999865432 1 146999751    111  10 0        1111111111111122457899999


Q ss_pred             CCCCCCeEEEEEEEeCCC
Q psy1095         235 VYPEDEGEFTCRVANELG  252 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~  252 (325)
                      ++.+|+|.|.|.+.|...
T Consensus        86 v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          86 LQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             CChhhCEEEEEEEEeCCC
Confidence            999999999999998654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.61  E-value=5.5e-07  Score=62.39  Aligned_cols=85  Identities=18%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             cCCcEEEEEEEEecCC----------CCCeeEEeeCC--EE---ec-c------CCCCceEEEecC-CcceeEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPP----------NDHDISWFRNN--RL---IK-L------DSDMKPEVQVDS-KENLVIARLKIPH  234 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~----------~~~~~~W~~~~--~~---~~-~------~~~~~~~~~~~~-~~~~~~~~l~i~~  234 (325)
                      .|++++|.|.......          ..+.+.|+|..  .+   +. .      ...++.+..... ......+.|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            4889999999874331          12689999842  11   10 0      111111111110 0112458999999


Q ss_pred             CCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         235 VYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      ++.+|+|.|+|.+.+........+.|.|
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEE
Confidence            9999999999999987777777766666

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.59  E-value=1e-06  Score=56.78  Aligned_cols=74  Identities=18%  Similarity=0.207  Sum_probs=49.8

Q ss_pred             EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCee-EEEEEEEEEE
Q psy1095          83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIM  156 (325)
Q Consensus        83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~  156 (325)
                      +.|.|.+.| .|.+.|+||+++.++...........+   ...+|.|..-..+|...|+|++.|..-. ......|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999876 789999999999998764322111111   2346777766677777999999876532 3444555554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.58  E-value=4.9e-07  Score=61.61  Aligned_cols=67  Identities=19%  Similarity=0.284  Sum_probs=49.5

Q ss_pred             EecCCCeEEEEEEEEec--CCCeeEEeeCCe--eC------------CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEE
Q psy1095          76 ICDLGDTVRFQCSVTGQ--PAPWTSWSKDGK--PA------------TPNARVTIREKEDLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~--p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                      .+.+|++|+|.|...+.  ....+.||+...  ..            ....++..........|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998664  456799998432  11            012356655555667899999999999999998


Q ss_pred             EEe
Q psy1095         140 VEN  142 (325)
Q Consensus       140 ~~~  142 (325)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            854

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.56  E-value=1.9e-06  Score=55.57  Aligned_cols=77  Identities=21%  Similarity=0.326  Sum_probs=52.5

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC-cEEeEEEE
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG-EVVTSACL  260 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l  260 (325)
                      ++|.|.+.|..|+ +.++|++++.++......   ....+......+.|.|..-..+|...|+|.|.|..- .......|
T Consensus         2 ~~L~C~s~gSkP~-A~I~W~k~~~~l~~~~~~---~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L   77 (82)
T cd05883           2 IELNCTAMASKPA-ATIRWFKGNKELTGKSTV---EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYL   77 (82)
T ss_pred             EEEEEEecCCCCC-CEEEEEECCEECcCcccc---eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence            6899999876655 899999999988643221   112223345668899977777777799999998653 23334445


Q ss_pred             EE
Q psy1095         261 IV  262 (325)
Q Consensus       261 ~v  262 (325)
                      .|
T Consensus        78 ~V   79 (82)
T cd05883          78 EV   79 (82)
T ss_pred             EE
Confidence            44

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.56  E-value=1e-06  Score=61.83  Aligned_cols=75  Identities=21%  Similarity=0.339  Sum_probs=49.6

Q ss_pred             cCCceEecCCCeEEEEEEEEecC----CCeeEEeeC----Cee--C---C------CCC----cEEEEe--cCCeEEEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP----APWTSWSKD----GKP--A---T------PNA----RVTIRE--KEDLRFLEI  125 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~~----~~~--~---~------~~~----~~~~~~--~~~~~~l~i  125 (325)
                      .|..+.+.+|++++|.|.+...+    ...+.|++.    +.+  +   .      ...    ++....  ..+..+|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            45567789999999999986533    236899852    111  1   0      011    211111  123567999


Q ss_pred             ccCCCCCCeEEEEEEEeCCe
Q psy1095         126 SEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      .+++.+|+|.|.|.+.+...
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCC
Confidence            99999999999999987654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.56  E-value=1.1e-06  Score=59.85  Aligned_cols=82  Identities=27%  Similarity=0.431  Sum_probs=51.2

Q ss_pred             CcEEEEEEEEecCC-CCCeeEEeeCCEE----e---cc------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         180 DSVTFECQVQVVPP-NDHDISWFRNNRL----I---KL------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       180 ~~v~l~C~~~~~~~-~~~~~~W~~~~~~----~---~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      ++|+|.|.....+. ....+.|+|....    +   ..      ...+..+....+. ......|.|.+++.+|+|.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS-SLEDATISISNLRLEDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC-CCCceEEEEccCCcccCEEEEE
Confidence            46899999876541 1157999995431    0   00      0111111111110 0135789999999999999999


Q ss_pred             EEEe-CCCcEEeEEEEEE
Q psy1095         246 RVAN-ELGEVVTSACLIV  262 (325)
Q Consensus       246 ~~~~-~~~~~~~~~~l~v  262 (325)
                      .+.. ..|.......|.|
T Consensus        80 ~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEeCCCCcEEEEEEEEe
Confidence            9875 6677777777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.55  E-value=1.7e-06  Score=55.64  Aligned_cols=76  Identities=14%  Similarity=0.234  Sum_probs=53.3

Q ss_pred             eEecCCCeEEEEEEEEec--CCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQ--PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR  152 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  152 (325)
                      ..+..|++++|+|.....  |.+.++|+..+...-.      ....+..+|.+..+...|+|.++|.+....-.....+.
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~   82 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD   82 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence            357789999999998553  4459999965433211      11123457999999999999999999765444555666


Q ss_pred             EEEE
Q psy1095         153 LEIM  156 (325)
Q Consensus       153 l~v~  156 (325)
                      +.|.
T Consensus        83 V~Vl   86 (88)
T cd07694          83 IKVL   86 (88)
T ss_pred             EEEE
Confidence            6554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.55  E-value=4.6e-07  Score=61.67  Aligned_cols=77  Identities=13%  Similarity=0.163  Sum_probs=53.1

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...++.++|.|.+.++.+.+..+.|+++|..+..+..........+..+...+.|.+..-...+...|+|.+.+...
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            34567899999999977766899999999988543221111112233455567787876665567799999988653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.54  E-value=1.3e-06  Score=56.07  Aligned_cols=70  Identities=20%  Similarity=0.356  Sum_probs=48.1

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ++|.|.+.++.|+...+.|+++|.++..+..........+..+...+.|.|.....++...|+|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999998665579999999987543321111111233355566778887767777789999998764

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.52  E-value=1.5e-06  Score=59.52  Aligned_cols=84  Identities=19%  Similarity=0.322  Sum_probs=50.6

Q ss_pred             CCcEEEEEEEEecCC-CCCeeEEeeCCE--Eec--cC---------CCCceEEEec-CCcceeEEEEEeCCCCCCCCeEE
Q psy1095         179 GDSVTFECQVQVVPP-NDHDISWFRNNR--LIK--LD---------SDMKPEVQVD-SKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       179 g~~v~l~C~~~~~~~-~~~~~~W~~~~~--~~~--~~---------~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      |+++.|.|....... ....+.|++...  .+.  ..         ..+..+.... +........|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            678999999863221 124688988542  110  00         0011111110 00112347899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIV  262 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v  262 (325)
                      +|.+.+..+.....+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776666666654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.52  E-value=1.1e-06  Score=61.92  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=49.6

Q ss_pred             cCCceEecCCCeEEEEEEEEecC----CCeeEEeeCCe------eC---------C-CCC----cEEEEe--cCCeEEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP----APWTSWSKDGK------PA---------T-PNA----RVTIRE--KEDLRFLE  124 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~~~~------~~---------~-~~~----~~~~~~--~~~~~~l~  124 (325)
                      .|..+.+.+|++++|.|.+....    ...+.|++...      .+         . ...    |+.+..  ..+..+|.
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            45667788999999999986432    24689986321      00         0 011    122211  12346799


Q ss_pred             EccCCCCCCeEEEEEEEeCCe
Q psy1095         125 ISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      |.+++.+|+|.|.|.+.+...
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCC
Confidence            999999999999999987544

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.52  E-value=1.4e-06  Score=58.37  Aligned_cols=76  Identities=11%  Similarity=0.294  Sum_probs=51.6

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      .++.++|.|.+.++.|....+.|.++|..+.............+..+...+.|.+..-...+...|+|.+.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            3566999999999877668999999998864332111111233335555677777755555667999999987544

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.52  E-value=1.1e-06  Score=59.20  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=52.1

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  248 (325)
                      .+....+.+|+.++|.|.+.+..|. ...+.|++++..+.......    ..........+|.+..-+.+|...|+|.|.
T Consensus         7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~----~~~~~~~~~stlt~~~~r~D~g~~~sC~A~   82 (100)
T cd05755           7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD----NTKSPVNAPATITITVDREDHGANFSCETE   82 (100)
T ss_pred             ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc----ccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence            3344557899999999999875553 22479999999886432211    001112234677776555555559999999


Q ss_pred             eCCCc
Q psy1095         249 NELGE  253 (325)
Q Consensus       249 ~~~~~  253 (325)
                      +..+.
T Consensus        83 l~l~~   87 (100)
T cd05755          83 LDLRP   87 (100)
T ss_pred             eccCc
Confidence            87654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.51  E-value=2.5e-06  Score=57.36  Aligned_cols=71  Identities=21%  Similarity=0.405  Sum_probs=45.9

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ++.++|.|.+.|+.+....+.|.+++..+.............+..+...+.|.+..   .+.+.|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence            67899999999987655799999998643322221111112222334455666654   377899999988654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.50  E-value=1.1e-06  Score=61.89  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCC--ee---C---------CCCCcEEEEe--cCCeEEEEEccCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDG--KP---A---------TPNARVTIRE--KEDLRFLEISEVTL  130 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~  130 (325)
                      +.+.|..+.+.+|++|+|.|..... ....+.|||..  ..   +         ....++.+..  .....+|.|.+++.
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   81 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL   81 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence            3456777789999999999998653 45678999842  11   0         1124555542  24467899999999


Q ss_pred             CCCeEEEEEEEe
Q psy1095         131 EDAGLYTIKVEN  142 (325)
Q Consensus       131 ~d~G~Y~C~~~~  142 (325)
                      +|+|.|.|.+..
T Consensus        82 ~Dsg~Y~C~~~~   93 (116)
T cd07706          82 EDSAKYFCALST   93 (116)
T ss_pred             HHCEEEEEEEEC
Confidence            999999999864

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.50  E-value=2.1e-06  Score=60.43  Aligned_cols=81  Identities=22%  Similarity=0.400  Sum_probs=49.5

Q ss_pred             cCeeEecCCcEEEEEEEEecCC--CCCeeEEeeCCE------Ee-cc---------CCCCceEEEecCCcceeEEEEEeC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPP--NDHDISWFRNNR------LI-KL---------DSDMKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~--~~~~~~W~~~~~------~~-~~---------~~~~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      ....+..|+.++|.|.......  ....+.|++...      .+ ..         ..++..+....+......+.|.|.
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH   85 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence            3456789999999998864331  125699986321      11 00         111111111111112234789999


Q ss_pred             CCCCCCCeEEEEEEEeCCC
Q psy1095         234 HVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +++.+|+|.|.|.+.+...
T Consensus        86 ~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          86 NLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eCCcccCEEEEEEEEeCCC
Confidence            9999999999999997654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.49  E-value=2.1e-06  Score=59.22  Aligned_cols=84  Identities=19%  Similarity=0.314  Sum_probs=53.6

Q ss_pred             CCcEEEEEEEEecCC-----CCCeeEEeeCC-----EEe--c--c------CCCCceEEEecC-CcceeEEEEEeCCCCC
Q psy1095         179 GDSVTFECQVQVVPP-----NDHDISWFRNN-----RLI--K--L------DSDMKPEVQVDS-KENLVIARLKIPHVYP  237 (325)
Q Consensus       179 g~~v~l~C~~~~~~~-----~~~~~~W~~~~-----~~~--~--~------~~~~~~~~~~~~-~~~~~~~~l~i~~~~~  237 (325)
                      |+.++|.|...-.|.     ..+.+.|.+..     ...  .  .      ...++.+....+ ......+.|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            778999999764332     13789998741     111  0  0      111111111111 1122568999999999


Q ss_pred             CCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         238 EDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       238 ~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      +|+|.|.|.+..........+.|.|
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V  106 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEV  106 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEE
Confidence            9999999999997766777777766

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.48  E-value=2.5e-06  Score=58.89  Aligned_cols=78  Identities=26%  Similarity=0.385  Sum_probs=53.1

Q ss_pred             CCCeEEEEEEEEecC-------CCeeEEeeCC-----eeC----CC----------CCcEEEEe---cCCeEEEEEccCC
Q psy1095          79 LGDTVRFQCSVTGQP-------APWTSWSKDG-----KPA----TP----------NARVTIRE---KEDLRFLEISEVT  129 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p-------~~~v~W~~~~-----~~~----~~----------~~~~~~~~---~~~~~~l~i~~~~  129 (325)
                      .|++|+|+|.+.-.|       .+.+.|.+..     ...    ..          ..|..+..   ..+..+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            378999999976332       3688999741     110    00          12333322   1245789999999


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095         130 LEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      .+|+|.|.|.+.......+..+.|.|.
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999998866566777777775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.47  E-value=9.4e-07  Score=61.13  Aligned_cols=76  Identities=22%  Similarity=0.362  Sum_probs=48.4

Q ss_pred             eEecCCcEEEEEEEEec-CCCCCeeEEeeCCEE-----ecc--------CCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         175 RCCDGDSVTFECQVQVV-PPNDHDISWFRNNRL-----IKL--------DSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      .+.+|+.++|.|.+... +.  ..+.|++....     +..        ....................|.|.+++.+|+
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~--~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~   79 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSS--YYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS   79 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCc--ceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence            46789999999999865 33  78999984321     100        0001111111111111356899999999999


Q ss_pred             eEEEEEEEeCCC
Q psy1095         241 GEFTCRVANELG  252 (325)
Q Consensus       241 G~Y~C~~~~~~~  252 (325)
                      |.|.|.+.+..+
T Consensus        80 G~Y~C~v~~~~~   91 (105)
T cd00099          80 AVYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEEecCCC
Confidence            999999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.46  E-value=2.7e-06  Score=58.07  Aligned_cols=74  Identities=19%  Similarity=0.263  Sum_probs=49.3

Q ss_pred             eEEEEEEEEecC---CCeeEEeeCCee-----C---C--------C--CCcEEEEe--cCCeEEEEEccCCCCCCeEEEE
Q psy1095          82 TVRFQCSVTGQP---APWTSWSKDGKP-----A---T--------P--NARVTIRE--KEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        82 ~v~l~C~~~~~p---~~~v~W~~~~~~-----~---~--------~--~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      +|+|+|.....+   ...|.|+|....     +   .        .  ..+.....  .....+|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999986543   347899984211     1   0        0  02333332  2235679999999999999999


Q ss_pred             EEEe-CCeeEEEEEEEEE
Q psy1095         139 KVEN-NYGSVEATARLEI  155 (325)
Q Consensus       139 ~~~~-~~~~~~~~~~l~v  155 (325)
                      .+.+ ..|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9976 5565667777766

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.46  E-value=1.4e-06  Score=57.12  Aligned_cols=69  Identities=22%  Similarity=0.351  Sum_probs=47.3

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      +.|.|.+.+..|+ +.+.|++++..+....  .......+..+...+.|.+.....++.+.|+|.|.+....
T Consensus         2 ~~L~C~~~~~~P~-~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPA-ATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcC-CeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6899999887444 7999999998886322  1111122333445567777766667778999999987653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.45  E-value=3.4e-06  Score=57.52  Aligned_cols=83  Identities=20%  Similarity=0.386  Sum_probs=50.7

Q ss_pred             cEEEEEEEEecCC-CCCeeEEeeCCE-----Eec---c--CC----CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         181 SVTFECQVQVVPP-NDHDISWFRNNR-----LIK---L--DS----DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       181 ~v~l~C~~~~~~~-~~~~~~W~~~~~-----~~~---~--~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      ++.|.|....... ....+.|++...     .+.   .  +.    .++.+...........+.|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            6899998864431 124899998321     111   0  00    0000111111112245789999999999999999


Q ss_pred             EEEe-CCCcEEeEEEEEEE
Q psy1095         246 RVAN-ELGEVVTSACLIVD  263 (325)
Q Consensus       246 ~~~~-~~~~~~~~~~l~v~  263 (325)
                      .+.+ +.|..+..+.|.||
T Consensus        82 ~v~~~p~g~~~~~~~L~V~  100 (100)
T cd05888          82 RVITFPAGNFEAELVLTVW  100 (100)
T ss_pred             EEEeCCCCCeeeEEEEEeC
Confidence            9987 66777777777764

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.44  E-value=1.1e-06  Score=61.26  Aligned_cols=77  Identities=22%  Similarity=0.356  Sum_probs=49.4

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE--Eec----cC--------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR--LIK----LD--------SDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~--~~~----~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      +....+.+|+.++|.|.+.+ +.  ..+.|+|...  .+.    ..        ......+..... ......|.|.+++
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~--~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~~~   80 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GH--DNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP-SLTRSSLTIKSAE   80 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CC--CEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc-CCCccEEEECCCC
Confidence            34567889999999999976 44  7899998532  110    00        000001111110 1135689999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy1095         237 PEDEGEFTCRVANEL  251 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~  251 (325)
                      .+|+|.|.|.+.+..
T Consensus        81 ~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          81 PEDSAVYLCASSLGG   95 (110)
T ss_pred             hhhCEEEEEEeeCCC
Confidence            999999999997653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.44  E-value=1.8e-06  Score=59.70  Aligned_cols=77  Identities=18%  Similarity=0.318  Sum_probs=49.0

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EE---ecc-CC------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RL---IKL-DS------DMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~---~~~-~~------~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ..+....+.+|++++|.|.+.+... ...+.|+|..  ..   +.. ..      ..+.....    ......|.|.+++
T Consensus         5 Q~p~~~~v~~G~~v~L~C~~~~~~~-~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~~~   79 (106)
T cd04980           5 QSPATLSVSPGESATISCKASQSVS-SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG----SGTDFTLTISRVE   79 (106)
T ss_pred             ECCCcEEECCCCCEEEEEEECCCCC-CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec----cCCEEEEEECCCC
Confidence            3344567889999999999875541 2679999742  11   110 00      00111111    1134679999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy1095         237 PEDEGEFTCRVANE  250 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~  250 (325)
                      .+|+|.|.|.+.+.
T Consensus        80 ~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          80 PEDAAVYYCQQYGT   93 (106)
T ss_pred             hHHCEEEEEEEeCC
Confidence            99999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.44  E-value=3.3e-06  Score=54.36  Aligned_cols=77  Identities=16%  Similarity=0.172  Sum_probs=53.1

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ..+..|++++|+|.....+.+.+.++|+..+........      .      ...+|.+..+...|+|.++|.+.....+
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~------~------~~ktL~~~qv~~qdSG~WtC~V~~~~k~   76 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN------Q------DKKTLNLVQLGPNDSGTWDCIVSVNSSE   76 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc------C------CccEEEeceeCcccCCEEEEEEEECceE
Confidence            357789999999999654442258999976654321110      1      1248999999999999999999876555


Q ss_pred             EEeEEEEEE
Q psy1095         254 VVTSACLIV  262 (325)
Q Consensus       254 ~~~~~~l~v  262 (325)
                      ....+.+.|
T Consensus        77 ~~~~~~V~V   85 (88)
T cd07694          77 KTLKLDIKV   85 (88)
T ss_pred             EEEEeeEEE
Confidence            544545544

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.43  E-value=6.7e-06  Score=56.93  Aligned_cols=78  Identities=23%  Similarity=0.390  Sum_probs=53.4

Q ss_pred             CCeEEEEEEEEecC-----------CCeeEEeeC-----CeeCC---------------C--CCcEEEEe---cCCeEEE
Q psy1095          80 GDTVRFQCSVTGQP-----------APWTSWSKD-----GKPAT---------------P--NARVTIRE---KEDLRFL  123 (325)
Q Consensus        80 g~~v~l~C~~~~~p-----------~~~v~W~~~-----~~~~~---------------~--~~~~~~~~---~~~~~~l  123 (325)
                      |++++|+|.+.-.|           ...|.|++-     +....               .  ..|..+..   ..+..+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            78899999997433           238899874     11100               0  11333221   1245789


Q ss_pred             EEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095         124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMD  157 (325)
Q Consensus       124 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  157 (325)
                      .|.+++.+|+|.|.|.+.+........+.|.|..
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999988777777777777753

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.43  E-value=2e-06  Score=57.91  Aligned_cols=68  Identities=15%  Similarity=0.264  Sum_probs=46.9

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      ...+..|++|+|.|.... ..  ..+.|+|++........      .........+.+.|.+++.+|+|.|.|....
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~--~~f~l~k~g~~~~~~~~------~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RF--DRFILYKEGRSKPVLHL------YEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CC--CEEEEEECCCCCCceec------ccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            456778999999997754 23  67999998865321100      0000011346899999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.43  E-value=4.9e-06  Score=55.68  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=46.9

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .++..+|.|.+.|+.|.+..+.|.++|..+..+..........+..+...+.|.+..   .+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence            356689999999987766899999999987543222111112222344456666654   35569999998864

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.42  E-value=1.4e-05  Score=65.91  Aligned_cols=193  Identities=15%  Similarity=0.222  Sum_probs=106.8

Q ss_pred             CCchhcccceeeecccCCCCcccCCC----------CCCCCCCCCCcccCCCCCCCcccccccccccc--------cccC
Q psy1095           2 AIPEEKENSLSVKLTRPSGLMSGHST----------PRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT--------RRLT   63 (325)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~--------~~~~   63 (325)
                      +||-..|-.-+++.+-|+.-|...+.          .....-++.|++|.-.|+|.|.-+..+...+.        ...+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~  245 (490)
T PHA03271        166 AYPRPSELISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ  245 (490)
T ss_pred             cCCCHHHHhHHhhcCCCCccccCCCCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe
Confidence            45655555556677777777766542          11122356699999999996654443322222        1222


Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cCC--CeeEEeeCCeeCCCCCcEEE----Eec-CC---eEEEEEccCCCCC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA--PWTSWSKDGKPATPNARVTI----REK-ED---LRFLEISEVTLED  132 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~~----~~~-~~---~~~l~i~~~~~~d  132 (325)
                      -||.+.+.+.+  +.+|+...-.|.+.. +|.  ..++||++|.++........    ... ++   ..+|.+.+...+.
T Consensus       246 RPPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~  323 (490)
T PHA03271        246 RPASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDP  323 (490)
T ss_pred             cCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCC
Confidence            67777776665  778999999999976 443  47899999988754321111    111 11   1233343333333


Q ss_pred             CeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEe
Q psy1095         133 AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI  207 (325)
Q Consensus       133 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~  207 (325)
                      .=+.+|.+.-..+....+.  .....|.+..+|.+...     ...|+   ..|.+.=-|.. ..+.|.-++...
T Consensus       324 PPsLRCeV~W~rd~v~s~r--nAaatP~VY~~P~ISv~-----FedG~---AVCtA~CVP~g-V~lrWlVgD~p~  387 (490)
T PHA03271        324 PPKISCLVAWKQGDMISTT--NATAIPTVYHHPRISLA-----FKDGY---AICTIECVPSG-ITVRWLVHDEPQ  387 (490)
T ss_pred             CCCceEEEEEccCCceeee--ecccCCccccCCeEEEE-----EeCCE---EEEeccccCCC-cEEEEEecCCCC
Confidence            3478999854332111111  22333444445655433     33343   34555433432 789998876554

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.42  E-value=2.7e-06  Score=60.13  Aligned_cols=74  Identities=23%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC------CCeeEEeeCCee------C---CC--------CCcEEEE--ecCCeEEEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP------APWTSWSKDGKP------A---TP--------NARVTIR--EKEDLRFLE  124 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p------~~~v~W~~~~~~------~---~~--------~~~~~~~--~~~~~~~l~  124 (325)
                      ..|..+.+.+|++|+|.|......      ...+.||+....      +   ..        ..|+.+.  ...+..+|.
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~   83 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL   83 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence            346667889999999999875321      245899985321      0   00        1244442  234567899


Q ss_pred             EccCCCCCCeEEEEEEEeC
Q psy1095         125 ISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~  143 (325)
                      |.+++.+|+|.|.|.+...
T Consensus        84 I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          84 ISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EccCChhhCeEEEEEEEcC
Confidence            9999999999999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.42  E-value=6.3e-06  Score=55.76  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=32.5

Q ss_pred             eEEEEEeCCCCCCCCeEEEEEEEe-CCCcEEeEEEEEE
Q psy1095         226 VIARLKIPHVYPEDEGEFTCRVAN-ELGEVVTSACLIV  262 (325)
Q Consensus       226 ~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v  262 (325)
                      ..++|.|.+++.+|.|.|.|.+.+ +.|..+..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            457899999999999999999998 6787888888876

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.41  E-value=5.1e-06  Score=61.47  Aligned_cols=84  Identities=17%  Similarity=0.262  Sum_probs=59.2

Q ss_pred             eEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCC----------C--CCcEE-EEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          75 KICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPAT----------P--NARVT-IREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~----------~--~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      ..|.+|++|+|.|... +...+.+.|+|....+.          +  ..++. +.......+|+|.+++.+|+|.|.|.+
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            4588999999999984 55677899999643221          1  12443 223334567999999999999999998


Q ss_pred             Ee-CCe-eEEEEEEEEEECC
Q psy1095         141 EN-NYG-SVEATARLEIMDP  158 (325)
Q Consensus       141 ~~-~~~-~~~~~~~l~v~~~  158 (325)
                      .. ..| ..+...-|.|...
T Consensus       105 ~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EecCCCCCceeEEEEEEEch
Confidence            53 334 5667777787654

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.41  E-value=1.4e-06  Score=59.11  Aligned_cols=79  Identities=22%  Similarity=0.294  Sum_probs=50.7

Q ss_pred             cCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCC-------------CCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         178 DGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDS-------------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       178 ~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      .|++|+|.|.... ...  ..+.|++....+....             .++.+.....    ....|.|.+++.+|+|.|
T Consensus         3 ~G~sVtL~c~~~~~~~~--~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~----~~~sL~I~~~~~~DsG~Y   76 (97)
T cd05775           3 LGGSVTLPLNIPDGTEI--ESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQ----NDYSLQISNLKMEDAGSY   76 (97)
T ss_pred             cCCeEEEeCCCCCCcEE--EEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecC----CceeEEECCCchHHCEEE
Confidence            5999999998753 222  5799998654332111             1111111111    347899999999999999


Q ss_pred             EEEEEeCCCcE-EeEEEEEE
Q psy1095         244 TCRVANELGEV-VTSACLIV  262 (325)
Q Consensus       244 ~C~~~~~~~~~-~~~~~l~v  262 (325)
                      .|.+....+.. ...+.|.|
T Consensus        77 ~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          77 RAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEEEcCCCCeEEEEEEEEe
Confidence            99999876544 44555544

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.41  E-value=5.2e-06  Score=54.35  Aligned_cols=63  Identities=16%  Similarity=0.300  Sum_probs=42.7

Q ss_pred             EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCC-e----EEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKED-L----RFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~----~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +.|.|.+.+ +|.+.|+|+++++++...........++ .    ..|.+.....+|...|+|++.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            689999987 5888999999999886543222222121 1    2344545556677899999987653

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.38  E-value=2.4e-06  Score=57.43  Aligned_cols=67  Identities=19%  Similarity=0.302  Sum_probs=44.8

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccC--------------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLD--------------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |++|+|.|.......  ..+.|++........              ..+..+....     ....|.|.+++.+|+|.|.
T Consensus         1 G~~VtL~c~~~~~~~--~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~l~~~DsG~Y~   73 (92)
T cd05741           1 GESVTLPVSNLPENL--QEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-----PNGSLLIQNLTKEDSGTYT   73 (92)
T ss_pred             CCcEEEEcccCCCCC--EEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-----CCceEEEccCCchhcEEEE
Confidence            789999998865333  689999865332110              1111111111     2368999999999999999


Q ss_pred             EEEEeCCC
Q psy1095         245 CRVANELG  252 (325)
Q Consensus       245 C~~~~~~~  252 (325)
                      |.+....+
T Consensus        74 c~v~~~~~   81 (92)
T cd05741          74 LQIISTNG   81 (92)
T ss_pred             EEEEcCCC
Confidence            99988764

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.38  E-value=1e-05  Score=56.06  Aligned_cols=38  Identities=24%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             eEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         226 VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       226 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      ....|.|.+++.+|+|.|.|.+.+........+.|.|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            46899999999999999999999988888888777773

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.37  E-value=3.8e-06  Score=55.04  Aligned_cols=69  Identities=17%  Similarity=0.282  Sum_probs=47.2

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +.|.|.+.++.|+ +.+.|+++|..+..... ......++..+...+.|.+.....+|...|+|.+.+...
T Consensus         2 ~~LtC~a~g~~P~-~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPA-ANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCC-CEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            6899999887554 79999999988764321 111111222333456788877777778899999998764

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.36  E-value=4.9e-06  Score=54.46  Aligned_cols=63  Identities=19%  Similarity=0.226  Sum_probs=41.4

Q ss_pred             EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +.|.|.+.+ +|.+.++|+++++++...........++    ...|.+.....++.+.|+|.+.+...
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence            689999976 5888999999999886433111111221    12344444445566799999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.36  E-value=3.2e-06  Score=57.43  Aligned_cols=76  Identities=26%  Similarity=0.318  Sum_probs=49.1

Q ss_pred             CCeEEEEEEEEecCC-CeeEEeeCCee----C---CC----------CCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          80 GDTVRFQCSVTGQPA-PWTSWSKDGKP----A---TP----------NARVTIR-EKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        80 g~~v~l~C~~~~~p~-~~v~W~~~~~~----~---~~----------~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      |++|+|.|....... -.+.|+|....    +   ..          ..++.+. ......+|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999999754332 26899984321    0   00          1122221 1234567999999999999999998


Q ss_pred             Ee-CCeeEEEEEEEEE
Q psy1095         141 EN-NYGSVEATARLEI  155 (325)
Q Consensus       141 ~~-~~~~~~~~~~l~v  155 (325)
                      .. ..|.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            64 4456666666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.36  E-value=2.7e-06  Score=58.05  Aligned_cols=76  Identities=17%  Similarity=0.312  Sum_probs=50.3

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec---CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD---SKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ..|+.++|.|.+.|+.+....+.|+++|..+............+   +..+...+.|.+..-...+...|+|.+.+...
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            34678999999999887768899999998875432111111111   23444556777755444556689999988653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.35  E-value=1.2e-05  Score=53.55  Aligned_cols=71  Identities=18%  Similarity=0.319  Sum_probs=47.7

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ..|...+|.|.+.++.|....+.|.++|..+. +..........+..+...+.|.+.   ..+...|+|.+.+..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence            34667799999999887778999999999876 432222222222233344556555   456668999998854

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.33  E-value=4.5e-06  Score=54.57  Aligned_cols=70  Identities=27%  Similarity=0.414  Sum_probs=47.9

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ++|.|.+.++.|+ +.++|+++|..+....... .....+..+...+.|.+..-..++...|+|.|.+..-.
T Consensus         2 ~~LtC~a~gf~P~-~~itW~kng~~l~~~~~~~-~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPA-ADIRWFKNDKEIKDVKYLK-EEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCC-CEEEEEECCEECcCceeeE-eeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            6899999987665 8999999999875332111 11122223445677888766667777999999886543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.32  E-value=1.6e-05  Score=53.37  Aligned_cols=74  Identities=14%  Similarity=0.197  Sum_probs=48.8

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ..|+.++|.|.+.++.+....+.|+++|..+.............+..+...+.|.+..   .+...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence            3578899999999987776899999999987654211111111222344455666543   4556999999986543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.32  E-value=4e-06  Score=57.11  Aligned_cols=70  Identities=21%  Similarity=0.358  Sum_probs=49.3

Q ss_pred             eEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeC-------------CCCCcEEEEe--cCCeEEEEEccCCCCCCeEEEE
Q psy1095          75 KICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPA-------------TPNARVTIRE--KEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~-------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      +.+.+|++|+|.|.... .....+.|+|.....             ....++.+..  ......|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            35778999999999764 345678999864211             1123444432  2446789999999999999999


Q ss_pred             EEEeCC
Q psy1095         139 KVENNY  144 (325)
Q Consensus       139 ~~~~~~  144 (325)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            986543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.32  E-value=3.2e-06  Score=57.20  Aligned_cols=68  Identities=25%  Similarity=0.343  Sum_probs=47.5

Q ss_pred             cCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCc-EEEE-ecCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          78 DLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNAR-VTIR-EKED----LRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        78 ~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~-~~~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      ..|+.+.|.|.+.|. | ...++|++++..+..... .... ..++    ...|.+......|.+.|+|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            468999999999986 6 468999999998865542 1111 2222    12355655556699999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.31  E-value=7e-06  Score=55.72  Aligned_cols=82  Identities=22%  Similarity=0.349  Sum_probs=51.1

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCE----Eec-c--------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNR----LIK-L--------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~----~~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      |++++|.|........ ..+.|++...    .+. .        ...+..+.... ......+.|.|.+++.+|+|.|.|
T Consensus         1 G~~vtL~C~~~~~~~~-~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C   78 (97)
T cd05846           1 GGNVTLSCNLTLPEEV-LQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKC   78 (97)
T ss_pred             CCcEEEEEEeCCCCee-EEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEE
Confidence            7899999987543321 3699998432    110 0        00111111110 111245789999999999999999


Q ss_pred             EEE-eCCCcEEeEEEEEE
Q psy1095         246 RVA-NELGEVVTSACLIV  262 (325)
Q Consensus       246 ~~~-~~~~~~~~~~~l~v  262 (325)
                      .+. .+.|.....+.|+|
T Consensus        79 ~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          79 IFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEEeCCCCCeeeEEEEEE
Confidence            976 46677777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.30  E-value=4.5e-06  Score=58.53  Aligned_cols=79  Identities=23%  Similarity=0.453  Sum_probs=49.0

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE-----Eec-cCCCCceEEE---------ecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR-----LIK-LDSDMKPEVQ---------VDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~-----~~~-~~~~~~~~~~---------~~~~~~~~~~~l~i~~~  235 (325)
                      +....+.+|+.+.|.|... .......+.|++...     .+. ..........         ...........|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             CCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            3456788999999999998 222226899998322     111 0000000000         00001124578999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy1095         236 YPEDEGEFTCRVANE  250 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~~  250 (325)
                      +.+|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SGGGEEEEEEEEEES
T ss_pred             CcCcCEEEEEEEEEC
Confidence            999999999999886

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.30  E-value=1.6e-05  Score=53.87  Aligned_cols=74  Identities=26%  Similarity=0.459  Sum_probs=48.5

Q ss_pred             eEEEEEEEEec-CC---CeeEEeeCCe----eC-----------CC--CCcEEEE-ecCCeEEEEEccCCCCCCeEEEEE
Q psy1095          82 TVRFQCSVTGQ-PA---PWTSWSKDGK----PA-----------TP--NARVTIR-EKEDLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        82 ~v~l~C~~~~~-p~---~~v~W~~~~~----~~-----------~~--~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                      .|+|.|.+... |.   ..|.|.+...    .+           ..  ..|.... ......+|.|.+++.+|+|.|.|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            58999998742 21   1689987421    11           00  1122222 122346799999999999999999


Q ss_pred             EEe-CCeeEEEEEEEEE
Q psy1095         140 VEN-NYGSVEATARLEI  155 (325)
Q Consensus       140 ~~~-~~~~~~~~~~l~v  155 (325)
                      +.+ ..|..+..+.|.|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            988 5667777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.30  E-value=7.3e-06  Score=53.60  Aligned_cols=63  Identities=16%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCC-----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKED-----LRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      ++|.|.+.+ +|...++|+|+|..+...........++     ...|.+.....++...|+|++.+...
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            689999977 6788999999999986543222222121     23455655555667799999987543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.29  E-value=7.1e-06  Score=53.88  Aligned_cols=72  Identities=25%  Similarity=0.439  Sum_probs=51.5

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      .++.++|.|.+.++.+....+.|++++..+.............+..+...+.|.+.   ..+...|+|.+.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            37899999999998776689999999998865443332222234455556677776   4556689999988654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.28  E-value=6.2e-06  Score=57.12  Aligned_cols=66  Identities=21%  Similarity=0.384  Sum_probs=45.8

Q ss_pred             EecCCCeEEEEEEEEec-CCCeeEEeeCCee---C--------C-----------CCCcEEEE--ecCCeEEEEEccCCC
Q psy1095          76 ICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKP---A--------T-----------PNARVTIR--EKEDLRFLEISEVTL  130 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~---~--------~-----------~~~~~~~~--~~~~~~~l~i~~~~~  130 (325)
                      .+.+|++|+|.|...+. ....+.||+....   .        .           ...++...  .......|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            47789999999998653 3457999985321   0        0           01244332  223456799999999


Q ss_pred             CCCeEEEEEEE
Q psy1095         131 EDAGLYTIKVE  141 (325)
Q Consensus       131 ~d~G~Y~C~~~  141 (325)
                      +|+|.|.|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999874

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.28  E-value=1e-05  Score=56.23  Aligned_cols=80  Identities=18%  Similarity=0.244  Sum_probs=53.8

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec-CCcceeEEEEEeCCCCCCC-CeEEEEEEEeCCCc
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD-SKENLVIARLKIPHVYPED-EGEFTCRVANELGE  253 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  253 (325)
                      +..++.++|.|.+.++.|....+.|++++..+..+.......... +..+...+.|.+......+ ...|+|.+.+....
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            335677999999999887667999999998876443211111122 2345566778887655444 45999999987554


Q ss_pred             EE
Q psy1095         254 VV  255 (325)
Q Consensus       254 ~~  255 (325)
                      ..
T Consensus        95 ~~   96 (115)
T cd05769          95 DT   96 (115)
T ss_pred             cc
Confidence            44

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.27  E-value=2.5e-05  Score=54.08  Aligned_cols=76  Identities=22%  Similarity=0.412  Sum_probs=50.4

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe-EEEEEEEeCCC
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG-EFTCRVANELG  252 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~  252 (325)
                      ....|+.++|.|.+.++.+....++|++||..+..... ......++..+...+.|.+..- ..|.| .|+|.+.+...
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCC
Confidence            34568889999999998776689999999999864321 1111112224445567777654 34434 69999998653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.27  E-value=5.4e-06  Score=57.00  Aligned_cols=66  Identities=20%  Similarity=0.321  Sum_probs=46.3

Q ss_pred             EecCCCeEEEEEEEEecCCCeeEEeeCCee----C------CC------------CCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKP----A------TP------------NARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~----~------~~------------~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      .+.+|++|+|.|.........+.||+....    .      ..            ..++..........|.|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            367899999999986544556899985321    0      00            1233333334566799999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|.+.
T Consensus        82 gtY~Ca~~   89 (104)
T cd05720          82 GYYFCSVA   89 (104)
T ss_pred             EEEEEEEc
Confidence            99999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.27  E-value=4.8e-06  Score=58.67  Aligned_cols=76  Identities=20%  Similarity=0.361  Sum_probs=47.3

Q ss_pred             cCeeEecCCcEEEEEEEEe--cCCCCCeeEEeeCC--EEe----ccCC-C--------CceEEEecCCcceeEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQV--VPPNDHDISWFRNN--RLI----KLDS-D--------MKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~--~~~~~~~~~W~~~~--~~~----~~~~-~--------~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ....+.+|+.++|.|.+.+  .+.  ..+.|++..  ...    .... .        ....+............|.|.+
T Consensus         6 ~~~~~~~G~~v~l~C~~~~~~~~~--~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           6 LSITREESKSVTISCKVSGIDFST--TYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             CeEEeCCCCCEEEEEEEeCCCccc--cEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            3456778999999999876  344  789999842  111    0000 0        0001111100011356899999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|+|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.27  E-value=1.1e-05  Score=54.16  Aligned_cols=81  Identities=23%  Similarity=0.370  Sum_probs=50.8

Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeCC----EEec-c----C----CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRNN----RLIK-L----D----SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR  246 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~~----~~~~-~----~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  246 (325)
                      ++++|.|....... ...+.|.|-.    ..+. .    +    ..+..+.... ......++|.|.+++.+|.|.|+|.
T Consensus         1 ~~vtL~C~~~~~~~-~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~   78 (96)
T cd05887           1 KNVTLKCRIQVNET-ITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICK   78 (96)
T ss_pred             CCEEEEEEecCCCc-EEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEE
Confidence            36899999864332 2589998732    1111 0    0    0111111111 0112357999999999999999999


Q ss_pred             EE-eCCCcEEeEEEEEE
Q psy1095         247 VA-NELGEVVTSACLIV  262 (325)
Q Consensus       247 ~~-~~~~~~~~~~~l~v  262 (325)
                      +. .+.|+...+..|.|
T Consensus        79 v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          79 AVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEeCCCCCeeEEEEEEE
Confidence            75 57788888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.25  E-value=0.00027  Score=59.88  Aligned_cols=124  Identities=17%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCC---eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCC
Q psy1095         121 RFLEISEVTLEDAGLYTIKVENNY---GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDH  196 (325)
Q Consensus       121 ~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~  196 (325)
                      ..|.|..++..++|.|+-.+.+..   ......+.+.+...      |.+...  ...+.+|+...-.|.+..+ |+...
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~------PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~Sv  360 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKR------PNITVI--GDPVLLGNPYAAYCKVNKYYPPHSV  360 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecC------CCcccc--CCccccCCCceEEEEeeeecCCCce
Confidence            449999999999999987765322   23345555665554      444333  3357889999999998765 44456


Q ss_pred             eeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCC--CeEEEEEEEeCCC
Q psy1095         197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED--EGEFTCRVANELG  252 (325)
Q Consensus       197 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d--~G~Y~C~~~~~~~  252 (325)
                      .++||+|+..+..............+..+..++|.+......|  .-..+|.+.....
T Consensus       361 rlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RD  418 (566)
T PHA03269        361 IVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRD  418 (566)
T ss_pred             EEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccC
Confidence            8999999888764221111111122233455677775433223  3478999876443

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.22  E-value=3.2e-05  Score=53.51  Aligned_cols=67  Identities=22%  Similarity=0.386  Sum_probs=42.1

Q ss_pred             ecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEEEEecCC-e----EEEEEccCCCCCCe-EEEEEEEeCC
Q psy1095          77 CDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVTIREKED-L----RFLEISEVTLEDAG-LYTIKVENNY  144 (325)
Q Consensus        77 v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~-~----~~l~i~~~~~~d~G-~Y~C~~~~~~  144 (325)
                      ...|+.++|.|.+.+ +|. ..++|++||+.+...........++ .    ..|.+.. ...|.| .|+|.+.+..
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            557888999999988 464 5899999999986432211111121 1    2244443 444444 6999998764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.22  E-value=1.9e-05  Score=52.98  Aligned_cols=73  Identities=19%  Similarity=0.297  Sum_probs=47.5

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .++.++|.|.+.++.+....+.|.++|.. ..+..........+..+...+.|.+..........|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999998777789999999987 32211111111223345555677766543333558999998865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=98.20  E-value=1.7e-05  Score=53.22  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=47.5

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +..+..++|.|.+.++.|....+.|.++|..+..+...... ..+++.+...+.|.+..-.  ....|+|.+.+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~-~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEK-DKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccE-ecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            33466799999999987766899999999987543221111 1233344455667665432  2336999998843

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.20  E-value=9.6e-06  Score=55.20  Aligned_cols=71  Identities=18%  Similarity=0.304  Sum_probs=44.8

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCE--Ee---cc-------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNR--LI---KL-------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+.+|++++|.|...........+.|++...  ..   ..       ....+......+    ....|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~----~~~~L~I~~~~~~Dsg~   77 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG----NTASLTISGAQTEDEAD   77 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC----CEEEEEECCCChhhCEE
Confidence            3568999999999865411115799998322  11   00       000111111111    45789999999999999


Q ss_pred             EEEEEEe
Q psy1095         243 FTCRVAN  249 (325)
Q Consensus       243 Y~C~~~~  249 (325)
                      |.|.+.+
T Consensus        78 Y~C~~~~   84 (98)
T cd04984          78 YYCQVWD   84 (98)
T ss_pred             EEEEEcc
Confidence            9999865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.19  E-value=1.3e-05  Score=56.50  Aligned_cols=79  Identities=18%  Similarity=0.284  Sum_probs=48.7

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EEe---cc-----CCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RLI---KL-----DSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~~---~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      +....+..|++|+|.|........ ..+.|++..  ..+   ..     ......+.............|.|.+++.+|+
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~-~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   84 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTN-YYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS   84 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCc-eEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence            345678899999999998653221 679999832  111   00     0010111111111112357899999999999


Q ss_pred             eEEEEEEEeC
Q psy1095         241 GEFTCRVANE  250 (325)
Q Consensus       241 G~Y~C~~~~~  250 (325)
                      |.|.|.+...
T Consensus        85 g~Y~C~~~~~   94 (116)
T cd07706          85 AKYFCALSTL   94 (116)
T ss_pred             EEEEEEEECC
Confidence            9999999753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.18  E-value=2.2e-05  Score=52.64  Aligned_cols=75  Identities=19%  Similarity=0.351  Sum_probs=50.0

Q ss_pred             CeEEEEEEEEec-CCCeeEEeeCCe----eCC-----------C--CCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          81 DTVRFQCSVTGQ-PAPWTSWSKDGK----PAT-----------P--NARVTIR-EKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        81 ~~v~l~C~~~~~-p~~~v~W~~~~~----~~~-----------~--~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      ++|+|.|..... ....|.|.|...    .+.           .  ..|.... ......+|.|.+++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            468999998642 334789987421    110           0  1233332 12234689999999999999999985


Q ss_pred             -eCCeeEEEEEEEEE
Q psy1095         142 -NNYGSVEATARLEI  155 (325)
Q Consensus       142 -~~~~~~~~~~~l~v  155 (325)
                       ...|...++..|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             56677888888776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.18  E-value=1.7e-05  Score=56.02  Aligned_cols=79  Identities=16%  Similarity=0.290  Sum_probs=48.8

Q ss_pred             cCeeEecCCcEEEEEEEEecC----CCCCeeEEeeCCEE------ec-cC------CCCceEEEecCCcceeEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVP----PNDHDISWFRNNRL------IK-LD------SDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~----~~~~~~~W~~~~~~------~~-~~------~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ....+.+|+.|+|.|......    .....+.|++....      +. ..      ..+..+....++.....+.|.|.+
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~   86 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD   86 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence            456788999999999875322    11256899985321      11 00      111111112112233567899999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy1095         235 VYPEDEGEFTCRVANE  250 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~  250 (325)
                      ++.+|+|.|.|.+...
T Consensus        87 l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          87 AQPEDSGKYFFRVELG  102 (119)
T ss_pred             CChhhCeEEEEEEEcC
Confidence            9999999999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.17  E-value=3e-05  Score=52.07  Aligned_cols=78  Identities=21%  Similarity=0.333  Sum_probs=45.7

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeEEeeCCeeCCCCC-cEEEEec-CCeE-EEEEccCCCCCCeEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTSWSKDGKPATPNA-RVTIREK-EDLR-FLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~-~~~~~~~-~~~~-~l~i~~~~~~d~G~Y~C~  139 (325)
                      ||.+.+.+....   ++.++|.|.+.|+ |.. .++|++++..+.... ....... ++.. ......+...+.+.|+|.
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~   78 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR   78 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence            566655544332   7889999999994 544 889999986432221 1111112 2211 112223444578899999


Q ss_pred             EEeCCe
Q psy1095         140 VENNYG  145 (325)
Q Consensus       140 ~~~~~~  145 (325)
                      +.+...
T Consensus        79 V~H~~~   84 (93)
T cd07698          79 VEHSGL   84 (93)
T ss_pred             EEeCCC
Confidence            977543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.17  E-value=1.3e-05  Score=56.40  Aligned_cols=72  Identities=17%  Similarity=0.340  Sum_probs=49.6

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeCCe---e--C---C-----------CCCcEEEEecC--CeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDGK---P--A---T-----------PNARVTIREKE--DLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~~---~--~---~-----------~~~~~~~~~~~--~~~~l~i~~  127 (325)
                      .|....+.+|++|+|.|......  ...+.|||...   +  +   .           ...++......  ....|.|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            46677789999999999876432  45689998421   1  0   0           01344444332  335799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         128 VTLEDAGLYTIKVEN  142 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~  142 (325)
                      ++.+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998754

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.15  E-value=0.0005  Score=58.01  Aligned_cols=124  Identities=17%  Similarity=0.240  Sum_probs=77.4

Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCe
Q psy1095         121 RFLEISEVTLEDAGLYTIKVENNYGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHD  197 (325)
Q Consensus       121 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~  197 (325)
                      ..|.|..++...+|.|+-...+..+..  ...+.+.....      |.+...  ...+.+|+...-.|.+..+ |+....
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~------Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~  269 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNA------PLVDLS--VHPSLKGENYRAVCVVASYFPHSSVK  269 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecC------Cccccc--CCccccCCCceEEEEeeeecCCCceE
Confidence            348999999999999987765543332  23333333443      444443  3357889999999998765 444568


Q ss_pred             eEEeeCCEEeccCCCCceEEE-ecCCcceeEEEEEeCCCCC-CCCeEEEEEEEeCCC
Q psy1095         198 ISWFRNNRLIKLDSDMKPEVQ-VDSKENLVIARLKIPHVYP-EDEGEFTCRVANELG  252 (325)
Q Consensus       198 ~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~  252 (325)
                      ++||+|+.++........... .........++|.+..... +..=..+|.+.....
T Consensus       270 ~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd  326 (486)
T PHA03273        270 LRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRD  326 (486)
T ss_pred             EEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccC
Confidence            999999998873222222111 1122334556777776543 344489999876443

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.14  E-value=2.9e-05  Score=51.76  Aligned_cols=78  Identities=18%  Similarity=0.287  Sum_probs=47.3

Q ss_pred             eeEecCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEE-EEecCC----eEEEEEccCCCCCCeEEEEEE
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVT-IREKED----LRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      .|...+..... .|+.+.|.|.+. ++|.|.++|+.++..+....... ....++    ...|.+..-..++...++|.+
T Consensus         2 ~I~~~~~~~~~-~~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~   80 (89)
T PF08205_consen    2 EITPNPSLLEG-EGEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRA   80 (89)
T ss_dssp             EEEEECSEEES-STEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEE
T ss_pred             EeeCCCeeEcc-cceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEE
Confidence            44444433323 278999999875 58999999999987762111111 111121    234666655556777999999


Q ss_pred             EeCCe
Q psy1095         141 ENNYG  145 (325)
Q Consensus       141 ~~~~~  145 (325)
                      .+...
T Consensus        81 ~~~~~   85 (89)
T PF08205_consen   81 SHPAL   85 (89)
T ss_dssp             EETTC
T ss_pred             ECCcc
Confidence            88654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.13  E-value=1.8e-05  Score=53.84  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=46.7

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCEE-----ecc----CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRL-----IKL----DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      .+.+|++++|.|....... ...+.|++....     +..    ......+.............|.|.+++.+|+|.|.|
T Consensus         3 ~~~~G~~vtl~C~~~~~~~-~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNR-SYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCC-CcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            4678999999998764322 267899985321     100    000001111111111245789999999999999999


Q ss_pred             EEEeCC
Q psy1095         246 RVANEL  251 (325)
Q Consensus       246 ~~~~~~  251 (325)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            987654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.12  E-value=1.7e-05  Score=53.43  Aligned_cols=77  Identities=18%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             eEecCCcEEEEEEEEec-CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         175 RCCDGDSVTFECQVQVV-PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      .+..|+.++|.|.+.++ .+....+.|.|++........ .......+..+...+.|.+..-...+.-.|+|.+.+...
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~-~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASI-QPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEe-cccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            35568899999999999 665689999998753321111 111112233444556777765544445589999988654

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.08  E-value=8.1e-05  Score=49.95  Aligned_cols=69  Identities=25%  Similarity=0.314  Sum_probs=41.7

Q ss_pred             ecCCCeEEEEEEEEe-cCCC-eeEEeeCCeeCCCCC-cEEEEecCC-eE-EEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          77 CDLGDTVRFQCSVTG-QPAP-WTSWSKDGKPATPNA-RVTIREKED-LR-FLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        77 v~~g~~v~l~C~~~~-~p~~-~v~W~~~~~~~~~~~-~~~~~~~~~-~~-~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +.+|+.++|.|.+.| +|.. .++|+++|+.+.... .......++ .. ......+...+...|+|.+.+...
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l   84 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL   84 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence            346889999999998 4544 789999999876531 111111221 11 111122334556699999987543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.08  E-value=2.7e-05  Score=57.74  Aligned_cols=88  Identities=20%  Similarity=0.319  Sum_probs=56.5

Q ss_pred             CeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEec-cCCCCceEEE--ecCCc-----ceeEEEEEeCCCCCCCCeEE
Q psy1095         173 NLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIK-LDSDMKPEVQ--VDSKE-----NLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~-~~~~~~~~~~--~~~~~-----~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      ...|.+|++++|.|... +...  +.+.|+|....+. .... .....  ..++.     ....+.|.|.+++.+|+|.|
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~--~qVtWkK~~~~IatY~~~-g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY  100 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNS--ILITWKKNNKTIAGYGPC-GPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCY  100 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCcc--ceEEEEEcCCCEEEEecC-CcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEE
Confidence            45678899999999974 3333  7899999643221 1100 00000  00111     11457899999999999999


Q ss_pred             EEEEEe-CCC-cEEeEEEEEEE
Q psy1095         244 TCRVAN-ELG-EVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~-~~~-~~~~~~~l~v~  263 (325)
                      .|...- +.| ..+....|.|.
T Consensus       101 ~C~F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        101 TCIFNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEEEEecCCCCCceeEEEEEEE
Confidence            998764 456 67777788874

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.07  E-value=2.4e-05  Score=54.15  Aligned_cols=72  Identities=24%  Similarity=0.398  Sum_probs=44.2

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCEE---------ec-cCCC----------CceEEEecCCcceeEEEEEeCC
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRL---------IK-LDSD----------MKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~---------~~-~~~~----------~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      .+.+|+.++|.|.+...... ..+.|++....         +. ....          .+.....  ........|.|.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~-~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~~   78 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISEN-TRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV--TSDSSRYRLHINR   78 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCC-CeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE--ECCCCEEEEEECC
Confidence            46789999999998753321 57999984321         00 0000          0111000  0011346799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|+|.|.|...+
T Consensus        79 ~~~~Dsg~YyCa~~~   93 (107)
T cd07700          79 VKPEDSGTYFCMTVG   93 (107)
T ss_pred             CCHHHCEEEEEeEcC
Confidence            999999999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.07  E-value=0.00097  Score=55.83  Aligned_cols=124  Identities=15%  Similarity=0.193  Sum_probs=78.8

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCe--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCee
Q psy1095         122 FLEISEVTLEDAGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHDI  198 (325)
Q Consensus       122 ~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~~  198 (325)
                      .|.|..++...+|.|+-...+..+  ...+.+.+..+..      |.+...+  ..+..|+...-.|.+..+ |+....+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~------Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~l  254 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRR------PSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAF  254 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecC------CcccccC--CccccCCCceEEEEeeeecCCCceEE
Confidence            389999999999999998766444  2334455555443      4444333  347789999999998665 4445689


Q ss_pred             EEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCC-CCeEEEEEEEeCCCc
Q psy1095         199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE-DEGEFTCRVANELGE  253 (325)
Q Consensus       199 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~  253 (325)
                      +||+|+..+..............+.....+++.+...... ..=..+|.+......
T Consensus       255 rWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~  310 (466)
T PHA03270        255 RWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDS  310 (466)
T ss_pred             EEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCC
Confidence            9999999875433222222233333445566766654332 223889998765443

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.06  E-value=3.2e-05  Score=51.56  Aligned_cols=73  Identities=19%  Similarity=0.370  Sum_probs=47.4

Q ss_pred             CCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         179 GDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       179 g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      |+.+.|.|.+.+ +|+  +.+.|+.++..+... .........+......+.|.+..-..++...++|.|.+.....
T Consensus        14 ~~~~~~~C~s~~~~P~--~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPP--PQITWYLDGGPVVAS-NTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS---EEEEEEETTCEECEE-EEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECC--eEEEEEECCCceeee-eeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            679999998765 555  899999998877111 0011111222333455788887666667779999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd00096 Ig Immunoglobulin domain

Probab=98.05  E-value=3.5e-05  Score=48.38  Aligned_cols=62  Identities=35%  Similarity=0.583  Sum_probs=45.2

Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcE----EEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARV----TIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      +.|.|.+.+.+...+.|++++.........    ..........|.+.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999988778899999988766443211    11112334679999999999999999997754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03376 BARF1; Provisional

Probab=98.05  E-value=1e-05  Score=59.62  Aligned_cols=74  Identities=7%  Similarity=0.016  Sum_probs=50.9

Q ss_pred             CCCCCCCcccCCCCCCCcccccccccccccccC-----CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe
Q psy1095          31 TPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLT-----SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK  104 (325)
Q Consensus        31 ~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~-----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~  104 (325)
                      ..-+|.|.+++++|.|.|+|..+..........     .|-.+.+..+......-+...+.|.+.|+|.|.++|.-+..
T Consensus        85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376         85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            345677999999999999999977665443333     23334443322222335668899998889999999997643

>cd00096 Ig Immunoglobulin domain

Probab=98.04  E-value=6.3e-05  Score=47.13  Aligned_cols=66  Identities=27%  Similarity=0.476  Sum_probs=46.1

Q ss_pred             EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +.|.|.+.+.+.  ..+.|++++.........  ..............|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPP--PTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCC--CcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            478999987444  889999988765433221  001112223356789999999999999999998865

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.03  E-value=6.1e-05  Score=50.56  Aligned_cols=80  Identities=16%  Similarity=0.251  Sum_probs=46.4

Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeCCE----Eecc-----C----CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRNNR----LIKL-----D----SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR  246 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~~~----~~~~-----~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  246 (325)
                      +.++|.|....... ...+.|.|-..    .+..     +    ..+..+....+ ......+|.|.+++.+|.|.|+|.
T Consensus         1 ~~vtL~C~~~~~~~-~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~   78 (96)
T cd05889           1 EKMKLECVYPKTGV-LIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCS   78 (96)
T ss_pred             CCEEEEeEcCCCCc-EEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEE
Confidence            36889998853222 26788988422    1110     0    11111111111 011347899999999999999999


Q ss_pred             EEe-CCCcEEeEEEEE
Q psy1095         247 VAN-ELGEVVTSACLI  261 (325)
Q Consensus       247 ~~~-~~~~~~~~~~l~  261 (325)
                      +.. +.|.....+.|.
T Consensus        79 ~~t~P~g~~~~~i~~~   94 (96)
T cd05889          79 LVTYPQGSWEKVIEVV   94 (96)
T ss_pred             EEeCCCCCeEEEEEEE
Confidence            865 566666555543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.02  E-value=2.4e-05  Score=52.52  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=48.8

Q ss_pred             EecCCcEEEEEEEEecC-CCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         176 CCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+..++|.|.+.++. +.+..|.|.+++.. . . .........+..+...+.|.+..-.......|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-A-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-c-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            44678899999999977 65689999999875 1 1 11111112233455667787775444444579999988654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.02  E-value=4.6e-05  Score=51.87  Aligned_cols=80  Identities=15%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             CCeeEecCC-ceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCc-EE-EEecCCe----EEEEEccCCCCCCeE
Q psy1095          65 SPRFYAVPH-NKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNAR-VT-IREKEDL----RFLEISEVTLEDAGL  135 (325)
Q Consensus        65 ~p~~~~~~~-~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~-~~~~~~~----~~l~i~~~~~~d~G~  135 (325)
                      ||.+.+.+. ......++.++|.|.+.| +| ...|+|+++|+.+..... .. ....++.    ..|.+......+...
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   80 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV   80 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            455544433 334556788999999988 55 567899999998853211 01 1111221    224444443345679


Q ss_pred             EEEEEEeCC
Q psy1095         136 YTIKVENNY  144 (325)
Q Consensus       136 Y~C~~~~~~  144 (325)
                      |+|.+.+..
T Consensus        81 ~sC~V~H~~   89 (100)
T cd07699          81 YTCEVTHEG   89 (100)
T ss_pred             EEEEEEecC
Confidence            999997654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.01  E-value=0.00042  Score=58.74  Aligned_cols=165  Identities=17%  Similarity=0.160  Sum_probs=90.5

Q ss_pred             CCCCCCcccCCCCCCCcccccccccc--------cccccCCCCeeEecCCceEecCCCeEEEEEEEEe-cCC--CeeEEe
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAI--------RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA--PWTSWS  100 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~--------~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~--~~v~W~  100 (325)
                      .-.|.|+++...++|.|+=...+...        ..+.+..+|.+.+.+.+  +.+|+...-.|.+.. +|.  ..+.||
T Consensus       288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf  365 (566)
T PHA03269        288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWT  365 (566)
T ss_pred             ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEE
Confidence            35688999999999999744322211        12333467777776665  778999999999976 443  478999


Q ss_pred             eCCeeCCCCC---cEEEEecCC---eEEEEEccCCCCC--CeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCc
Q psy1095         101 KDGKPATPNA---RVTIREKED---LRFLEISEVTLED--AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLE  172 (325)
Q Consensus       101 ~~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d--~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~  172 (325)
                      +|+.++....   .+....++.   .++|.+......|  --+.+|.+.-..+... ...+.-...+.+..+|.+...  
T Consensus       366 ~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS-~tRfnAaatP~VY~~PtISm~--  442 (566)
T PHA03269        366 SNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVS-HMKYSAAVTPDVYPFPNVSIE--  442 (566)
T ss_pred             eCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCch-heecccccCCccccCCeEEEE--
Confidence            9998887421   112222221   1233332221222  2366999853322111 111122233333444554433  


Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEe
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI  207 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~  207 (325)
                         ...|.   ..|.+.=-|.....+.|+-++...
T Consensus       443 ---FedG~---AVCtA~CVP~~~V~l~WlVgD~p~  471 (566)
T PHA03269        443 ---IIDGH---IVCLAKCVPRGVVHFNWWINDIPI  471 (566)
T ss_pred             ---EeCCE---EEEecccccCCCceEEEEecCCCC
Confidence               33343   345554333332589998876653

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.97  E-value=0.0074  Score=50.45  Aligned_cols=125  Identities=15%  Similarity=0.254  Sum_probs=76.2

Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCe--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCe
Q psy1095         121 RFLEISEVTLEDAGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHD  197 (325)
Q Consensus       121 ~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~  197 (325)
                      -.+.|.++...++|.|.-...+...  ...+.+.+.+...     +|.+...+  ..+..|+...-.|.+..+ |+....
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~R-----PPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~Svr  279 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQR-----PASVDVLA--PPVLSGENYKASCIVRHFYPPGSVY  279 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEec-----CCCccccC--CccccCCCceEEEEeeeecCCCceE
Confidence            3588999999999966554444332  2344555555543     34444433  346789999999998765 444568


Q ss_pred             eEEeeCCEEeccCCCCceEE--EecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         198 ISWFRNNRLIKLDSDMKPEV--QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       198 ~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ++|+++|.............  ..........++|.+.+...+..=..+|.+.....
T Consensus       280 lrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd  336 (490)
T PHA03271        280 VSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG  336 (490)
T ss_pred             EEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence            99999998875443222211  11222334456676765544445589999876544

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.93  E-value=0.00019  Score=48.05  Aligned_cols=76  Identities=22%  Similarity=0.388  Sum_probs=44.1

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCc-EEEEec-CCe----EEEEEccCCCCCCeEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNAR-VTIREK-EDL----RFLEISEVTLEDAGLY  136 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~-~~~----~~l~i~~~~~~d~G~Y  136 (325)
                      ||.+.+.+... ...++..+|.|.+.| +| ...++|.++|..+..... ...... ++.    ..|.+   ...+...|
T Consensus         1 ~P~V~v~~~~~-~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~y   76 (94)
T cd05767           1 PPEVTVFSLKP-VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIY   76 (94)
T ss_pred             CCEEEEEeCCc-ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeE
Confidence            45554333221 334666899999999 45 357899999998754321 111112 121    22433   34456699


Q ss_pred             EEEEEeCC
Q psy1095         137 TIKVENNY  144 (325)
Q Consensus       137 ~C~~~~~~  144 (325)
                      +|.+....
T Consensus        77 tC~V~H~~   84 (94)
T cd05767          77 SCIVEHWG   84 (94)
T ss_pred             EEEEEeCC
Confidence            99997654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.93  E-value=0.00013  Score=48.98  Aligned_cols=72  Identities=22%  Similarity=0.319  Sum_probs=44.7

Q ss_pred             CeEEEEEEEEe-cCCCeeEEeeCCe----eC-----------CC--CCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          81 DTVRFQCSVTG-QPAPWTSWSKDGK----PA-----------TP--NARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        81 ~~v~l~C~~~~-~p~~~v~W~~~~~----~~-----------~~--~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      ++++|.|.... .....|+|.|...    .+           ..  ..|..... .....+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            46899999853 2345678987421    11           00  12332221 1234679999999999999999996


Q ss_pred             e-CCeeEEEEEE
Q psy1095         142 N-NYGSVEATAR  152 (325)
Q Consensus       142 ~-~~~~~~~~~~  152 (325)
                      . ..|...+.+.
T Consensus        81 t~P~g~~~~~i~   92 (96)
T cd05889          81 TYPQGSWEKVIE   92 (96)
T ss_pred             eCCCCCeEEEEE
Confidence            5 4555555444

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.92  E-value=4.9e-05  Score=49.53  Aligned_cols=59  Identities=29%  Similarity=0.494  Sum_probs=40.0

Q ss_pred             eEEEEEEEEecCCC--eeEEeeCCe--e---C-------------CCCCcEEEEec--CCeEEEEEccCCCCCCeEEEEE
Q psy1095          82 TVRFQCSVTGQPAP--WTSWSKDGK--P---A-------------TPNARVTIREK--EDLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        82 ~v~l~C~~~~~p~~--~v~W~~~~~--~---~-------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                      +|.|.|.+.....+  .+.|++...  .   +             ....++.....  .+..+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899998764443  789998531  0   0             01234444433  4567899999999999999996


Q ss_pred             E
Q psy1095         140 V  140 (325)
Q Consensus       140 ~  140 (325)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.92  E-value=7.1e-05  Score=52.63  Aligned_cols=79  Identities=16%  Similarity=0.320  Sum_probs=46.1

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--E-E--ec-c---CC------CCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--R-L--IK-L---DS------DMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~-~--~~-~---~~------~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+.+|+.++|.|...........+.|++..  . +  +. .   ..      .....+............|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            3456788999999999876433112569999832  1 1  10 0   00      000011111000012346999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.91  E-value=0.00018  Score=48.14  Aligned_cols=68  Identities=24%  Similarity=0.382  Sum_probs=41.4

Q ss_pred             CCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCC-cE-EEEecCCe----EEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          79 LGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNA-RV-TIREKEDL----RFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        79 ~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~-~~-~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      .++.++|.|.+.| +|. ..|+|+++|..+.... .. .....++.    ..|.+......+...|+|.+.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            4567999999998 454 5789999998863321 11 11112221    22444433334567999999876543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.90  E-value=0.00091  Score=56.53  Aligned_cols=161  Identities=19%  Similarity=0.171  Sum_probs=90.6

Q ss_pred             CCCCCcccCCCCCCCcccccccccc-------cccccCCCCeeEecCCceEecCCCeEEEEEEEEe-cC--CCeeEEeeC
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI-------RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QP--APWTSWSKD  102 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~-------~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p--~~~v~W~~~  102 (325)
                      ..|.|+.+...++|.|+=...+.++       ..+....+|.+.+.+.+  +.+|+...-.|.+.. +|  ...+.||+|
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            4588999999999999844323221       12233478888777665  788999999999976 44  347899999


Q ss_pred             CeeCCCCC----cEEEEecCC---eEEEEEccCCC-CCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCe
Q psy1095         103 GKPATPNA----RVTIREKED---LRFLEISEVTL-EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENL  174 (325)
Q Consensus       103 ~~~~~~~~----~~~~~~~~~---~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~  174 (325)
                      +.++....    ......++.   .++|.+..... +..=+.+|.+.-..... ....+.-...|.+..+|.+...    
T Consensus       276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~v-S~~RfsAt~~P~Vy~~P~Is~~----  350 (486)
T PHA03273        276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEV-SFARIAKAGTPSVFVAPTVSVT----  350 (486)
T ss_pred             CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCc-ceeeccccccCccccCCeEEEE----
Confidence            99887321    111111221   23344444322 33347899985332221 1111122233333444555433    


Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCC
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNN  204 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~  204 (325)
                       ...|+   ..|.+.=-|.....+.|+-++
T Consensus       351 -F~~G~---AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        351 -VEDGD---AVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             -EeCCE---EEEecccccCCCeeEEEEccC
Confidence             33332   345554333322789998766

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.87  E-value=0.001  Score=55.68  Aligned_cols=162  Identities=13%  Similarity=0.160  Sum_probs=90.8

Q ss_pred             CCCCcccCCCCCCCcccccccccc-------cccccCCCCeeEecCCceEecCCCeEEEEEEEEe-cC--CCeeEEeeCC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI-------RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QP--APWTSWSKDG  103 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~-------~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p--~~~v~W~~~~  103 (325)
                      .|.|+.+....+|.|+=...+...       ..+....+|.+.+.+.+  +.+|+...-.|.+.. +|  ...+.||+|+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            478999999999999966433222       22344477887777665  778999999999976 44  3478999999


Q ss_pred             eeCCCCCcEE--EEe-cCC---eEEEEEccCCCC-CCeEEEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCee
Q psy1095         104 KPATPNARVT--IRE-KED---LRFLEISEVTLE-DAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLR  175 (325)
Q Consensus       104 ~~~~~~~~~~--~~~-~~~---~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~  175 (325)
                      .++.......  ... .++   .+++++...... ..=+.+|.+.-..... ...  +.-...|.+..+|.+...     
T Consensus       261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR--~nAa~~P~VY~~P~Isv~-----  333 (466)
T PHA03270        261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSR--RNATGAPTVLPRPTIEME-----  333 (466)
T ss_pred             ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCcccee--ecccccCccccCCeEEEE-----
Confidence            9885422111  111 111   122333222211 1137799985332211 111  122233333444555433     


Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEec
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK  208 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~  208 (325)
                      ...|   ...|.+.=-|.. ..+.|.-++....
T Consensus       334 F~dG---~AVCtA~CVPeg-V~l~W~V~D~~~p  362 (466)
T PHA03270        334 FGGD---EAVCTAACVPEG-VTLAWLLGADPAP  362 (466)
T ss_pred             EeCC---EEEEeccccCCC-CEEEEEecCCCCC
Confidence            2233   334655434433 7899988765543

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.85  E-value=0.00028  Score=47.06  Aligned_cols=68  Identities=21%  Similarity=0.264  Sum_probs=41.5

Q ss_pred             ecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcEEEEec-CCeEE-EEEccCCCCCCeEEEEEEEeCC
Q psy1095          77 CDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARVTIREK-EDLRF-LEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        77 v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~-l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      +..|+..+|.|.+.| +| ...++|+++|..+........... +.... .....+...+...|+|.+....
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            345777899999998 44 447799999998762211112222 22111 1122345667779999997753

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.83  E-value=0.00026  Score=45.36  Aligned_cols=62  Identities=23%  Similarity=0.418  Sum_probs=39.1

Q ss_pred             EEEEEEEEec-CC-CeeEEeeCCeeCCCCCc-EEEEe-cCC----eEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          83 VRFQCSVTGQ-PA-PWTSWSKDGKPATPNAR-VTIRE-KED----LRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        83 v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      ++|.|.+.+. |. ..++|+|+++++..... ..... .++    ...|.+.....++...|+|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999884 54 58999999987543211 11111 122    2235555555667789999997653

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.80  E-value=0.00011  Score=50.53  Aligned_cols=70  Identities=21%  Similarity=0.347  Sum_probs=43.7

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEE-------ec-cCC--CC--------ceEEEecCCcceeEEEEEeCCCCC
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRL-------IK-LDS--DM--------KPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~-------~~-~~~--~~--------~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      +.+|++|+|.|.......  ..+.|++....       +. ...  ..        .......  .......|.|.+++.
T Consensus         3 v~~G~~vtL~C~~~~~~~--~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~--~~~~~~~L~I~~~~~   78 (104)
T cd05720           3 AELGQKVELKCEVLNSSP--TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS--RSSNSFVLTLKNFQK   78 (104)
T ss_pred             ccCCCeEEEEEEecCCCC--CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE--ecCCEEEEEECCCCH
Confidence            567999999998854433  57999984321       11 100  00        0111110  111456799999999


Q ss_pred             CCCeEEEEEEEe
Q psy1095         238 EDEGEFTCRVAN  249 (325)
Q Consensus       238 ~d~G~Y~C~~~~  249 (325)
                      +|+|.|.|.+.+
T Consensus        79 sDsgtY~Ca~~~   90 (104)
T cd05720          79 ENEGYYFCSVAS   90 (104)
T ss_pred             HHCEEEEEEEcc
Confidence            999999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>KOG1480|consensus

Probab=97.77  E-value=1.4e-05  Score=71.03  Aligned_cols=199  Identities=19%  Similarity=0.284  Sum_probs=111.4

Q ss_pred             CCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCC----eeEEeeCCeeCCC-----CCcEE
Q psy1095          43 LSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP----WTSWSKDGKPATP-----NARVT  113 (325)
Q Consensus        43 ~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~----~v~W~~~~~~~~~-----~~~~~  113 (325)
                      .|-|.|...+..+...     ..|.|+..|.+..+..+..+.|.|.+...+..    .=.|..+.+....     .+-..
T Consensus         7 ~~~~~~~~~~~~~a~g-----~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~   81 (909)
T KOG1480|consen    7 TDNGEALPESIPSAPG-----DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG   81 (909)
T ss_pred             CCchhhccccCCCCCC-----CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee
Confidence            4555555544332221     56788999999999999999999997533321    1134433221110     00000


Q ss_pred             EEecCCeEEEEEccCCCCCC---eEEEEEE--EeCCeeEEEE-EEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEE
Q psy1095         114 IREKEDLRFLEISEVTLEDA---GLYTIKV--ENNYGSVEAT-ARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQ  187 (325)
Q Consensus       114 ~~~~~~~~~l~i~~~~~~d~---G~Y~C~~--~~~~~~~~~~-~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~  187 (325)
                      ..    .....|.....++.   .-|.|+-  ....|..... ..+.+.     ...-.+...+....|..+..+++.|.
T Consensus        82 ~~----~~si~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~a-----y~rk~f~~~p~~q~V~~~s~~~l~cr  152 (909)
T KOG1480|consen   82 VR----EVSIDISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIA-----YLRKHFEQSPVGQEVQEETTLQLPCR  152 (909)
T ss_pred             EE----eeeeeeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHH-----HHHHhhccChhhheeccccccccccc
Confidence            00    01133333332222   3677664  3334411110 011111     11223445555667888899999997


Q ss_pred             EE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE-eEEEEEEEee
Q psy1095         188 VQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV-TSACLIVDVV  265 (325)
Q Consensus       188 ~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~  265 (325)
                      .. +.|.  ..+.|++++..+.........         ....+.+..++..|.|.|+|.|.|-.+... ..+.+.|+..
T Consensus       153 ~pe~~pa--ae~~w~k~e~~~~pd~n~~~~---------~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~  221 (909)
T KOG1480|consen  153 PPEGDPK--AEVEWLKNEVVIDPDANVIRA---------SDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVN  221 (909)
T ss_pred             Ccccchh--hhhhccccCCCCCccccchhh---------hcCCccccchhhhhcccceeeeehhhccccccceEEEEEEc
Confidence            74 4444  789999998877663332222         224799999999999999999999766443 3455555444


Q ss_pred             C
Q psy1095         266 K  266 (325)
Q Consensus       266 ~  266 (325)
                      .
T Consensus       222 g  222 (909)
T KOG1480|consen  222 G  222 (909)
T ss_pred             C
Confidence            3

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.76  E-value=0.00031  Score=48.87  Aligned_cols=83  Identities=22%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             CCeeEec-CCceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCc---EEEEecCCe----EEEEEccCCCCC-C
Q psy1095          65 SPRFYAV-PHNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNAR---VTIREKEDL----RFLEISEVTLED-A  133 (325)
Q Consensus        65 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d-~  133 (325)
                      +|.+.+. |....+.+++.++|.|.+.+ +|. ..|+|++++..+.....   ......++.    ..|.+......+ .
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~   81 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR   81 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence            4555443 33333456778999999998 454 47899999988764321   111111121    234444333323 5


Q ss_pred             eEEEEEEEeCCeeE
Q psy1095         134 GLYTIKVENNYGSV  147 (325)
Q Consensus       134 G~Y~C~~~~~~~~~  147 (325)
                      ..|+|.+.+.....
T Consensus        82 ~~ytC~V~H~g~~~   95 (115)
T cd05769          82 NTFTCIVQFYGGTD   95 (115)
T ss_pred             CeEEEEEEEeCCcc
Confidence            69999998765443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.75  E-value=0.00014  Score=49.61  Aligned_cols=69  Identities=22%  Similarity=0.421  Sum_probs=41.1

Q ss_pred             EecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEEE--Eec---CCe----EEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          76 ICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVTI--REK---EDL----RFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~--~~~---~~~----~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      .+..|+.++|.|.+.| +|. ..++|+++++++........  ...   ++.    ..|.+..-...+...|+|.+.+..
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            3456789999999998 453 36799999998754321111  111   121    224443322234568999997654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.62  E-value=0.00042  Score=47.52  Aligned_cols=76  Identities=5%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCC-CeeEEeeCCE-Eec------c-CC---CCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPND-HDISWFRNNR-LIK------L-DS---DMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~-~~~~W~~~~~-~~~------~-~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      ....+..|..++|.|.++++.... ..+.|.|... .+.      . +.   ..+......++.......|.|.+++.+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            345677889999999998766543 6788988321 110      0 00   0111111222223356789999999999


Q ss_pred             CeEEEEEE
Q psy1095         240 EGEFTCRV  247 (325)
Q Consensus       240 ~G~Y~C~~  247 (325)
                      .+.|.|..
T Consensus        86 Ta~Y~Ca~   93 (115)
T cd05721          86 TDIYFCKI   93 (115)
T ss_pred             CeEEEEEe
Confidence            99999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA02633 hypothetical protein; Provisional

Probab=97.60  E-value=0.00027  Score=41.94  Aligned_cols=39  Identities=26%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             EEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095         284 TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR  322 (325)
Q Consensus       284 ~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  322 (325)
                      ...|.|.++..+|+|.|.|...|..-..+.++.|.|...
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            346999999999999999999999989999999998654

>smart00406 IGv Immunoglobulin V-Type

Probab=97.60  E-value=0.00023  Score=46.22  Aligned_cols=67  Identities=24%  Similarity=0.397  Sum_probs=37.9

Q ss_pred             cEEEEEEEEecCCCCCeeEEeeCCE--E---ec-cC--C------CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095         181 SVTFECQVQVVPPNDHDISWFRNNR--L---IK-LD--S------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR  246 (325)
Q Consensus       181 ~v~l~C~~~~~~~~~~~~~W~~~~~--~---~~-~~--~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  246 (325)
                      .++|.|.+.........+.|++...  .   +. ..  .      ....+.............|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            3789998875443113789988432  1   11 00  0      00111111111112457899999999999999996


Q ss_pred             E
Q psy1095         247 V  247 (325)
Q Consensus       247 ~  247 (325)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.59  E-value=0.00053  Score=46.13  Aligned_cols=74  Identities=18%  Similarity=0.252  Sum_probs=41.0

Q ss_pred             cCCceEecCCCeEEEEEEEEec--C-CCeeEEeeCCeeCCC-CCcEEEEecCCe----EEEEEccCCCCCCeEEEEEEEe
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQ--P-APWTSWSKDGKPATP-NARVTIREKEDL----RFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~--p-~~~v~W~~~~~~~~~-~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .|....+..|+.++|.|.+.|.  | ...++|.|++..... .........++.    ..|.+......+...|+|.+.+
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            3444446678999999999987  4 346799998743211 111111111111    1233433222344589999977


Q ss_pred             CC
Q psy1095         143 NY  144 (325)
Q Consensus       143 ~~  144 (325)
                      ..
T Consensus        85 ~~   86 (96)
T cd07696          85 PD   86 (96)
T ss_pred             CC
Confidence            54

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.58  E-value=0.00065  Score=45.58  Aligned_cols=68  Identities=10%  Similarity=0.136  Sum_probs=38.6

Q ss_pred             ecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCc-EEEEecCCeEEEE-EccCCCC-CCeEEEEEEEeCC
Q psy1095          77 CDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNAR-VTIREKEDLRFLE-ISEVTLE-DAGLYTIKVENNY  144 (325)
Q Consensus        77 v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~l~-i~~~~~~-d~G~Y~C~~~~~~  144 (325)
                      +..+..++|.|.+.+ +| ...++|.++|..+..... ......++...+. -..+..+ ....|+|.+.+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g   85 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence            444677999999998 45 346799999998754321 1111222222111 1122333 2346999997743

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.52  E-value=0.0013  Score=45.23  Aligned_cols=71  Identities=8%  Similarity=0.065  Sum_probs=48.4

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC---CeeEEeeCCe-eC------------C--CCCcEEEE--ecCCeEEEEEccCC
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPA---PWTSWSKDGK-PA------------T--PNARVTIR--EKEDLRFLEISEVT  129 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~---~~v~W~~~~~-~~------------~--~~~~~~~~--~~~~~~~l~i~~~~  129 (325)
                      .++....+..|+.++|.|.+++...   -.+.|+|... .+            .  ...++...  ..++..+|.+.+++
T Consensus         3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            4456667888999999999976442   3578987421 10            0  11233222  23456789999999


Q ss_pred             CCCCeEEEEEE
Q psy1095         130 LEDAGLYTIKV  140 (325)
Q Consensus       130 ~~d~G~Y~C~~  140 (325)
                      .+|++.|.|..
T Consensus        83 a~DTa~Y~Ca~   93 (115)
T cd05721          83 ANQTDIYFCKI   93 (115)
T ss_pred             HHHCeEEEEEe
Confidence            99999999965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.51  E-value=0.0012  Score=44.25  Aligned_cols=71  Identities=15%  Similarity=0.189  Sum_probs=43.1

Q ss_pred             CCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         179 GDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       179 g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      .....+.|.+. |.|.  +.+.|+++...   .... ......++.....+.|.+.....+|...|+|.+.+..-...
T Consensus        15 ~~~~va~C~s~~gkP~--a~ItW~~~~~~---~~~~-~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~   86 (95)
T cd05719          15 EPVTVATCVSANGKPP--ATISWETTLGG---EAET-QSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP   86 (95)
T ss_pred             CccEEEEEECCCCcCC--CEEEEEeCCCC---ccee-EeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence            34678999986 4555  89999997111   0000 01011122344557888876666667799999998764433

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.51  E-value=0.0019  Score=43.32  Aligned_cols=65  Identities=20%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             CCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCc--EEEEecCCe----EEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          79 LGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNAR--VTIREKEDL----RFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        79 ~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      .++.++|.|.+.+ +| ...|+|+++|.. .....  ......++.    ..|.+....-.....|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4677999999998 45 347899999997 32210  011111221    223433322123558999997754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.45  E-value=0.001  Score=43.55  Aligned_cols=65  Identities=25%  Similarity=0.450  Sum_probs=42.6

Q ss_pred             cCCCeEEEEEEEEe-cCCC-eeEEeeCCeeCCCCCcEEEE--ecCCeE----EEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          78 DLGDTVRFQCSVTG-QPAP-WTSWSKDGKPATPNARVTIR--EKEDLR----FLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        78 ~~g~~v~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~--~~~~~~----~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      ..++.++|.|.+.+ +|.. .|.|++++..+.........  ..++..    .|.+.   ..+...|+|.+.+...
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            34899999999988 5544 78999999987654322211  223322    24444   5556689999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.44  E-value=0.0014  Score=43.89  Aligned_cols=75  Identities=15%  Similarity=0.100  Sum_probs=45.1

Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEe-cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV-DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      ....+.|.+.+..|+ +.+.|+++....     ....... .+......+.|.+..-..+|...|+|++.+..-.....+
T Consensus        16 ~~~va~C~s~~gkPa-a~IsW~~~~~g~-----~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~   89 (95)
T cd07703          16 PVPVAKCVSANGRPP-ARISWSSTLGGN-----ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL   89 (95)
T ss_pred             ccEEEEEEcCCCCCC-cEEEEEcCCCCC-----eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence            357899988754443 899999872111     1111111 122234557888876666677799999999764444333


Q ss_pred             EE
Q psy1095         259 CL  260 (325)
Q Consensus       259 ~l  260 (325)
                      .+
T Consensus        90 ~~   91 (95)
T cd07703          90 PV   91 (95)
T ss_pred             EE
Confidence            33

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.43  E-value=0.0021  Score=43.18  Aligned_cols=64  Identities=13%  Similarity=0.097  Sum_probs=39.2

Q ss_pred             CCeEEEEEEE-EecCCCeeEEeeCCeeCCCCCcEEE-EecCC----eEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          80 GDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTI-REKED----LRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        80 g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      .....+.|.+ .|.|.+.|+|+++.   ........ ...++    ...|.+.....+|...|+|++.+....
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            3457789998 56899999999971   11111111 11111    234666555566666999999886543

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.42  E-value=0.00041  Score=42.03  Aligned_cols=51  Identities=20%  Similarity=0.339  Sum_probs=35.1

Q ss_pred             cCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          78 DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        78 ~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..|.+|+|+|...+.   .+.|++++..+.....          .+.+.+-. ++.|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCC
Confidence            468999999985422   3899999866554222          13333444 889999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02633 hypothetical protein; Provisional

Probab=97.36  E-value=0.00081  Score=39.92  Aligned_cols=37  Identities=24%  Similarity=0.106  Sum_probs=32.4

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095         122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       122 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      .|.|.++..+|+|.|.|.+.|.......++.|.|...
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            4999999999999999999988877788888888764

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.35  E-value=0.0011  Score=40.47  Aligned_cols=60  Identities=18%  Similarity=0.318  Sum_probs=41.1

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      ...|.|.|.+    .  ..+.|++ |..+....               ..+|.|.....+-.|.|.|.+.+    .....
T Consensus         6 ~~~V~L~C~~----~--tsi~W~k-G~~~~~~~---------------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~   59 (69)
T cd07691           6 EGKVFLKCNG----A--TNITWKK-GKEILEVS---------------NTLLDLGSRINDPRGTYSCKESE----PNKEK   59 (69)
T ss_pred             CceEEEEecC----C--CcEEEec-Cccccccc---------------ccEEeccCcccCCCcceEecCcc----CCCcE
Confidence            4579999965    2  4699999 54433211               14799999999999999998876    22344


Q ss_pred             EEEEEe
Q psy1095         259 CLIVDV  264 (325)
Q Consensus       259 ~l~v~~  264 (325)
                      .|.|++
T Consensus        60 ~LQVyY   65 (69)
T cd07691          60 TLQVYY   65 (69)
T ss_pred             EEEEEE
Confidence            555543

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.33  E-value=0.0016  Score=43.31  Aligned_cols=63  Identities=14%  Similarity=0.175  Sum_probs=39.2

Q ss_pred             ecCCCeEEEEEEEEe-cCC--CeeEEeeCCeeCCCCCcEEEE-----ecCCeEEEEEccCCCCCCe-EEEEEEE
Q psy1095          77 CDLGDTVRFQCSVTG-QPA--PWTSWSKDGKPATPNARVTIR-----EKEDLRFLEISEVTLEDAG-LYTIKVE  141 (325)
Q Consensus        77 v~~g~~v~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G-~Y~C~~~  141 (325)
                      +.+|..+++.|.+.+ .|.  ..+.|++....+.... +.-.     .......+++... .+|.| +|+|.+.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~   83 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAK   83 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEE
Confidence            478999999999975 554  6789998766554332 1110     0111233555444 55555 9999985

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.31  E-value=0.00093  Score=40.78  Aligned_cols=50  Identities=22%  Similarity=0.359  Sum_probs=36.4

Q ss_pred             CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..+.|.|+|.+    ...|.|++ |..+....         ..+|.+.....+-.|.|.|.+.+
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            34679999965    24599999 55544321         23588888889999999998865

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.30  E-value=0.0024  Score=42.73  Aligned_cols=70  Identities=14%  Similarity=0.095  Sum_probs=41.2

Q ss_pred             CeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEecCC---eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          81 DTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKED---LRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        81 ~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      ..+.+.|.+. +.|.+.|+|+++...... .......++.   ...|.+.....+|...|+|++.+........+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~   89 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL   89 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence            3478999875 589999999987211110 0111111111   23466666566667799999988654433333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.22  E-value=0.0013  Score=44.22  Aligned_cols=78  Identities=14%  Similarity=0.257  Sum_probs=42.7

Q ss_pred             CeeE-ecCCceEecCCCeEEEEEEEEe-c-C-CCeeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEE
Q psy1095          66 PRFY-AVPHNKICDLGDTVRFQCSVTG-Q-P-APWTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        66 p~~~-~~~~~~~v~~g~~v~l~C~~~~-~-p-~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~  137 (325)
                      |.+. ..|....+..+..++|.|.+.+ + | ...|+|.+++.. ...........++    ...|.+..-.-.....|+
T Consensus         4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt   82 (99)
T cd04986           4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA   82 (99)
T ss_pred             CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence            4443 3344444557889999999998 4 4 347899999875 1111111111122    123444322222334799


Q ss_pred             EEEEeCC
Q psy1095         138 IKVENNY  144 (325)
Q Consensus       138 C~~~~~~  144 (325)
                      |.+.+..
T Consensus        83 C~V~H~~   89 (99)
T cd04986          83 CTVTHPE   89 (99)
T ss_pred             EEEECCC
Confidence            9997654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.13  E-value=0.091  Score=44.00  Aligned_cols=80  Identities=14%  Similarity=0.155  Sum_probs=48.4

Q ss_pred             CeeEecCCcEEEEEEEEe--cCCCCCeeEEeeCCEEecc---------------CCCCceEEEecCC--cceeEEEEEeC
Q psy1095         173 NLRCCDGDSVTFECQVQV--VPPNDHDISWFRNNRLIKL---------------DSDMKPEVQVDSK--ENLVIARLKIP  233 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~--~~~~~~~~~W~~~~~~~~~---------------~~~~~~~~~~~~~--~~~~~~~l~i~  233 (325)
                      ...+..|..|.|.|..+-  +.. -....|..-+-++..               ...-.+......+  .-...++|+|.
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~-i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNEN-ISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcc-cccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            345677999999998864  222 146789764433320               0011111111100  11256899999


Q ss_pred             CCCCCCCeEEEEEEEeCCCc
Q psy1095         234 HVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ++..+..|=|+|.|......
T Consensus       352 ka~I~N~GCY~~~a~~g~~~  371 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFK  371 (500)
T ss_pred             eEEEEcCCceEEEEecCcch
Confidence            99999999999999876443

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.04  E-value=0.0022  Score=38.91  Aligned_cols=51  Identities=22%  Similarity=0.523  Sum_probs=34.6

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      .|..|+|+|...   .  ..+.|.+++..+..+.                ..+.+.+-. ++.|.|.|.+.+.
T Consensus         6 sGTtVtlTCP~~---~--~~i~W~~n~~~~~g~~----------------~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLS---G--DDIKWKKNDQVSQGSD----------------EKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCC---C--CCceEEeCCccCCCCC----------------ceEEeeccC-CCCceEEEEeCCC
Confidence            589999999753   1  3489999985544211                134444444 8899999998543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.85  E-value=0.0097  Score=39.83  Aligned_cols=69  Identities=13%  Similarity=0.151  Sum_probs=42.4

Q ss_pred             eEecCCCeEEE-EEEE-EecCCCeeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          75 KICDLGDTVRF-QCSV-TGQPAPWTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        75 ~~v~~g~~v~l-~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      ..+.+|+.+.+ .|.+ .|.|.+.|+|+.+...... .. .....++    ...+.+.....+|.-.++|.+.+..-
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~-~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SH-SQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-ee-eecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            34678888988 8987 5689999999976332211 00 0111111    12355555556677799999977543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.82  E-value=0.0088  Score=39.85  Aligned_cols=73  Identities=22%  Similarity=0.323  Sum_probs=43.4

Q ss_pred             EecCCcEEEEEEEEecC-CCCCeeEEeeCCEEeccCCCCceEEEecCC-cceeEEEEEeCCCCCCCCe-EEEEEEEeCCC
Q psy1095         176 CCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSK-ENLVIARLKIPHVYPEDEG-EFTCRVANELG  252 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~  252 (325)
                      +.+|..+++.|.+.+.. .....+.|+++...+........   .+.+ .......+.+... .+|.| .|.|.|.-...
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~---~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLED---MDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccc---cccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence            47899999999997543 33478999987766553321110   0000 0112245555554 55555 99999976544

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.78  E-value=0.018  Score=38.50  Aligned_cols=74  Identities=16%  Similarity=0.159  Sum_probs=48.1

Q ss_pred             eeEecCCcEEE-EEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         174 LRCCDGDSVTF-ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       174 ~~v~~g~~v~l-~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ..+.+|+.+.+ .|.+.+..|+ +.+.|+.+......   ... ....++.....+.|.+...+.+|...++|.+.+..-
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPa-a~IsW~~~~~G~~~---~~~-~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPA-ADVTWETNVYGTSE---SHS-QEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eEeecCcceeEEEEEccCCccC-CEeEEeCCCCCccc---eee-ecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            45667888898 9988655444 89999986432211   111 111122444567888877777777899999988754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>KOG0613|consensus

Probab=96.74  E-value=0.0075  Score=57.64  Aligned_cols=168  Identities=10%  Similarity=-0.038  Sum_probs=97.8

Q ss_pred             ecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095          77 CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus        77 v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      ..+++...|.|.+.+...+.+.|+.+.......       .-+..+..+.+....+.+.|+|...+..+.....+.-.+.
T Consensus       241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~  313 (1205)
T KOG0613|consen  241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAP  313 (1205)
T ss_pred             ccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeeeEEee
Confidence            344555666666666555555555443322211       1112346667777788888888887766654443332222


Q ss_pred             CCCcc----------c---CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCc
Q psy1095         157 DPRAI----------I---SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE  223 (325)
Q Consensus       157 ~~~~~----------~---~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  223 (325)
                      ..+..          .   ..+.............+..+++.|...+.+.+ -.+.|+.+......+..........   
T Consensus       314 i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~---  389 (1205)
T KOG0613|consen  314 IGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKP-DEAQGYHGEEVSSESLGALPCPVGT---  389 (1205)
T ss_pred             ccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCC-chheeeccccccccccccccccccc---
Confidence            11110          0   11222222334456678889999999988873 3599998766554433221111111   


Q ss_pred             ceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095         224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       224 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  256 (325)
                       .+...+.|..+...+.+.|.|.|.|..|....
T Consensus       390 -~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~  421 (1205)
T KOG0613|consen  390 -VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT  421 (1205)
T ss_pred             -ccCcchhhhhcCcccccccccceeccCCcccc
Confidence             13457888899999999999999998886554

>PHA02982 hypothetical protein; Provisional

Probab=96.70  E-value=0.026  Score=42.69  Aligned_cols=117  Identities=13%  Similarity=0.217  Sum_probs=69.8

Q ss_pred             eEecCCCeEEEEEEEEe-cCCCeeEEeeCCe-eCC----------C--------CCcEEEEecCCeEEEEEccCCCCCCe
Q psy1095          75 KICDLGDTVRFQCSVTG-QPAPWTSWSKDGK-PAT----------P--------NARVTIREKEDLRFLEISEVTLEDAG  134 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~-~~~----------~--------~~~~~~~~~~~~~~l~i~~~~~~d~G  134 (325)
                      .....+++|.|+|.... ..-....|+++.. .+.          .        ...+.+.-.+..++|+|.++..++.|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            34567999999999643 2334678987532 111          0        12344455667789999999999999


Q ss_pred             EEEEEEEeCCeeEEE-EEEEEEECCCcccCCCeeeecCcCeeEec-CCcEEEEEEEEecCCCCCeeEEeeCCE
Q psy1095         135 LYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCD-GDSVTFECQVQVVPPNDHDISWFRNNR  205 (325)
Q Consensus       135 ~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~p~~~~~~~~~~v~~-g~~v~l~C~~~~~~~~~~~~~W~~~~~  205 (325)
                      -|+|.+....+..+. ..-|.|+..       .+.     ..+.+ ...-.+.|-+-....  .-..|.-+|.
T Consensus       114 CYtc~~ks~~~k~E~c~kCl~V~~~-------~V~-----~~W~e~nNeT~V~CyVgS~~~--dvp~W~V~GV  172 (251)
T PHA02982        114 CFTCEAKDAEGKEETCEKCLEIQKE-------DIL-----YVVEEHNNETIITCFVGSKHG--DVPRFIVAGI  172 (251)
T ss_pred             ceEEEEecCCCchheeheeeeEecc-------eEE-----EEEEecCCeEEEEEEEEeccC--CCccEEEeeE
Confidence            999999875543322 333444221       110     01122 334568897754443  2237887665

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.63  E-value=0.00095  Score=46.90  Aligned_cols=78  Identities=22%  Similarity=0.231  Sum_probs=43.8

Q ss_pred             ecCCCeEEEEEEEEe---c--CCCeeEEeeCCeeCCC---C-CcEE--------E-EecCCeEEEEEccCCCCCCeEEEE
Q psy1095          77 CDLGDTVRFQCSVTG---Q--PAPWTSWSKDGKPATP---N-ARVT--------I-REKEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        77 v~~g~~v~l~C~~~~---~--p~~~v~W~~~~~~~~~---~-~~~~--------~-~~~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      ..-+++|.|+|.+..   .  +...|.|..++..+-.   . .+..        + ....+..+|.+.....- .|+|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            446899999999854   1  2346899998876521   1 1110        1 01123445776654433 799999


Q ss_pred             EEEeCCeeEEEEEEEEE
Q psy1095         139 KVENNYGSVEATARLEI  155 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v  155 (325)
                      .+.......+..+.|..
T Consensus       103 eVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  103 EVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEecCCCceEEEEEEE
Confidence            99887776666666665

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG1480|consensus

Probab=95.90  E-value=0.0037  Score=56.34  Aligned_cols=77  Identities=26%  Similarity=0.392  Sum_probs=58.4

Q ss_pred             eeEecCCceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      .+...|.-..|..+..+.+.|.. .+.|...+.|++++..+.+.........   +.+.+..++..|.|+|+|++.|-.+
T Consensus       131 ~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d---~~li~~~arlsd~~nytc~a~ni~~  207 (909)
T KOG1480|consen  131 HFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD---HNLIISQARLSDSGNYTCEATNIVA  207 (909)
T ss_pred             hhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc---CCccccchhhhhcccceeeeehhhc
Confidence            34455666668888999999996 5678889999999988876444333333   2389999999999999999988665


Q ss_pred             e
Q psy1095         146 S  146 (325)
Q Consensus       146 ~  146 (325)
                      .
T Consensus       208 ~  208 (909)
T KOG1480|consen  208 K  208 (909)
T ss_pred             c
Confidence            3

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.90  E-value=0.0089  Score=42.12  Aligned_cols=85  Identities=24%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             ecCCcEEEEEEEEecC---CCCCeeEEeeCCEEeccCCCCceEEEec-------CCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095         177 CDGDSVTFECQVQVVP---PNDHDISWFRNNRLIKLDSDMKPEVQVD-------SKENLVIARLKIPHVYPEDEGEFTCR  246 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~---~~~~~~~W~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~  246 (325)
                      .-+++|.|+|.+....   .....+.|..++..+-.-..........       .....+.++|.+.....- .|.|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            3578999999985311   1125699999887763221111110000       111123466777764443 8999999


Q ss_pred             EEeCCCcEEeEEEEEE
Q psy1095         247 VANELGEVVTSACLIV  262 (325)
Q Consensus       247 ~~~~~~~~~~~~~l~v  262 (325)
                      +.....+....+.|..
T Consensus       104 Vt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  104 VTELSREGETTIELKY  119 (130)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEecCCCceEEEEEEE
Confidence            9998887777777665

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.51  E-value=0.026  Score=44.48  Aligned_cols=48  Identities=27%  Similarity=0.365  Sum_probs=36.8

Q ss_pred             CCCeeEEeeC-CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          93 PAPWTSWSKD-GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        93 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      ..|.+.|... ++.+....+..+...+   .|.+.+.+.+++|.|+|.....
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence            4678999975 5556655566665544   4999999999999999998654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG4597|consensus

Probab=95.26  E-value=0.029  Score=47.88  Aligned_cols=90  Identities=18%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC---CeeC--CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD---GKPA--TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~---~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+..-|....+-.+++..++|-+.|.+.+.|+|.+.   +..+  .+...+..........|.|-+..+.|+|-|+|.+.
T Consensus       198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~r  277 (560)
T KOG4597|consen  198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSAR  277 (560)
T ss_pred             ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccc
Confidence            444445566678899999999999999999999863   2222  11111111111234569999999999999999999


Q ss_pred             eCCeeEEEEEEEEEE
Q psy1095         142 NNYGSVEATARLEIM  156 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~  156 (325)
                      +..|...+.+.+.+.
T Consensus       278 cg~g~~~rdv~c~s~  292 (560)
T KOG4597|consen  278 CGAGFLRRDVPCSSV  292 (560)
T ss_pred             cccceeeccceeeee
Confidence            998877777766654

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=95.19  E-value=1.1  Score=34.67  Aligned_cols=62  Identities=13%  Similarity=0.202  Sum_probs=36.5

Q ss_pred             cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC-CCCCCCCeEEEEEEEeCCC
Q psy1095         191 VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP-HVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       191 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +|+....++||.|+..+..............+.....++|.+. +...+..-..+|.+.....
T Consensus         2 YPp~S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~   64 (211)
T PF02124_consen    2 YPPRSVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRD   64 (211)
T ss_pred             CCCCcEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccC
Confidence            3444478999999998763322221111112245566788883 4444445589999876544

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03042 CD47-like protein; Provisional

Probab=95.17  E-value=0.13  Score=40.89  Aligned_cols=71  Identities=18%  Similarity=0.396  Sum_probs=45.0

Q ss_pred             cCCcEEEEEEEEec---CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         178 DGDSVTFECQVQVV---PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       178 ~g~~v~l~C~~~~~---~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      -.+++.++|.+...   .-....++|..++..+-..+...            .++|.+... ..-.|+|+|.|.+...+.
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn------------~aSL~~~f~-~~l~GNYTCEv~~l~n~g   96 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN------------TSSLKFNFS-KNLSGNYTCEAINKFNKI   96 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc------------ceEEEEecc-ccCCCceeEEEeecccCc
Confidence            47889999998642   11126799999998775433321            145666433 334899999999866655


Q ss_pred             EeEEEEE
Q psy1095         255 VTSACLI  261 (325)
Q Consensus       255 ~~~~~l~  261 (325)
                      .....|.
T Consensus        97 k~~IeLk  103 (286)
T PHA03042         97 KNTIELQ  103 (286)
T ss_pred             cEEEEEE
Confidence            5444433

>KOG0613|consensus

Probab=95.13  E-value=0.041  Score=52.92  Aligned_cols=227  Identities=11%  Similarity=0.062  Sum_probs=129.6

Q ss_pred             eeeecccCCCCcccCC------CC-CCCCCCCCCcccCCCCCCCccccccccccccc---------------------cc
Q psy1095          11 LSVKLTRPSGLMSGHS------TP-RSTPRSTPPRSISPLSSRTFTPYSLNSAIRTR---------------------RL   62 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~------~~-~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~---------------------~~   62 (325)
                      |...|+.+.+.+..+.      +. .....+..|.+-.+.+.+.|+|...+...+..                     .+
T Consensus       249 i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aa  328 (1205)
T KOG0613|consen  249 IQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAA  328 (1205)
T ss_pred             eeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhc
Confidence            4455566555554432      11 12334667899999999999988765544221                     01


Q ss_pred             CCCCeeEec---CCceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCC--cEEEEecCCeEEEEEccCCCCCCeEE
Q psy1095          63 TSSPRFYAV---PHNKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNA--RVTIREKEDLRFLEISEVTLEDAGLY  136 (325)
Q Consensus        63 ~~~p~~~~~---~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y  136 (325)
                      ..+|.+...   -.......+..+.+.|...+.+.|. +.|+.+......+.  .+..........+.+..+...+.+.|
T Consensus       329 a~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~  408 (1205)
T KOG0613|consen  329 ARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFT  408 (1205)
T ss_pred             cCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCccccccc
Confidence            122222111   1233455677799999998887776 89998776654443  22222333455688889999999999


Q ss_pred             EEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEec--CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCc
Q psy1095         137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD--GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK  214 (325)
Q Consensus       137 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~--g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~  214 (325)
                      .|.+.|..+.........+...... ..+.............  -+.+.+.|...+++.+...++|.+++-.......  
T Consensus       409 ~~~a~n~~g~~~~~~~~~vs~~~~g-t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~--  485 (1205)
T KOG0613|consen  409 RVPAVNKGGTEQTIAESTVSEEMPG-TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSV--  485 (1205)
T ss_pred             ccceeccCCcccccchhhcccccCC-CCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccc--
Confidence            9999998886554444444433222 2222222222233333  3778889988877752245666665443321110  


Q ss_pred             eEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095         215 PEVQVDSKENLVIARLKIPHVYPEDEGEFTCR  246 (325)
Q Consensus       215 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  246 (325)
                      ..  ...    ....|.+.-....|.|.|.-.
T Consensus       486 ~l--~r~----~~tslLlk~~~~~~~A~~~~a  511 (1205)
T KOG0613|consen  486 TL--TRD----VLTSLLLKVASLSDGAQYTRA  511 (1205)
T ss_pred             cc--ccc----chhhheeeccCCCccchhhhh
Confidence            00  111    224566666777888888543

>TIGR00864 PCC polycystin cation channel protein

Probab=95.09  E-value=6  Score=42.62  Aligned_cols=251  Identities=17%  Similarity=0.125  Sum_probs=132.0

Q ss_pred             ccCCCCCCCcccccccccc-------cccccCCCC-eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC-eeCC--
Q psy1095          39 SISPLSSRTFTPYSLNSAI-------RTRRLTSSP-RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG-KPAT--  107 (325)
Q Consensus        39 ~v~~~d~G~Y~c~~~~~~~-------~~~~~~~~p-~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~-~~~~--  107 (325)
                      .++..++|.|.-.....+.       ....++.++ .+.+......+..|+.++|.+.+...+...+.|...+ ....  
T Consensus      1833 ~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t 1912 (2740)
T TIGR00864      1833 CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ 1912 (2740)
T ss_pred             EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec
Confidence            3788899999866432222       122333333 4445556667889999999999876667788887653 2221  


Q ss_pred             CCCcEEEEecCCeEEEEEccCCCCCCeEEEEE--EEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEE
Q psy1095         108 PNARVTIREKEDLRFLEISEVTLEDAGLYTIK--VENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE  185 (325)
Q Consensus       108 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~  185 (325)
                      ....+.              -.-..-|.|...  +.|..+...+...+.|+.+-   ....+. ......+..|+..+|.
T Consensus      1913 ~~~t~~--------------HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V---~gL~I~-~~c~~~~~~g~~~tF~ 1974 (2740)
T TIGR00864      1913 PGPRFS--------------HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAV---RGLQIP-DCCAAGIATGEEKNFT 1974 (2740)
T ss_pred             CCCeEE--------------eecCCCCcEEEEEEEEeccceeeeeEEEEEEEec---cceEec-CCcccceecCceEEEE
Confidence            111111              122234566544  46777776777777776541   111111 1112226789999999


Q ss_pred             EEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE--EEeCCCcEEeEEEEEEE
Q psy1095         186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR--VANELGEVVTSACLIVD  263 (325)
Q Consensus       186 C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~v~  263 (325)
                      -.+....+  ..+.|+.+-..+.-+..  ..  ..+    ...+...     ...|.|.-.  |.|..+.......+.|+
T Consensus      1975 A~v~~g~~--V~f~W~f~~~~~~g~~~--~~--~~G----~~vty~~-----~~~G~~~I~v~A~N~l~s~n~t~~i~VQ 2039 (2740)
T TIGR00864      1975 ANVQRGKP--VAFAWTFDLHHLHGDSL--VI--HMG----KDVSYTA-----EAAGLLEIQLGAFNALGAENITLQLEAQ 2039 (2740)
T ss_pred             EEEecCCc--eEEEEEeeecccCCCcc--ee--ecC----CceEEcc-----CCCcEEEEEEEEEcccCcccccEEEEEE
Confidence            98876666  78999865332221111  00  111    0112222     357777764  55666665544444443


Q ss_pred             eeCC---------eecC-----------CCC---ceEEEEeCCEEEEEEcCC----CCCCCeEEE--EEEECCCeeEEeE
Q psy1095         264 VVKG---------KDLT-----------SDG---RLNIITVGGTSVLTIEDI----TGDDSGKYQ--VHVSNQHGSDSCY  314 (325)
Q Consensus       264 ~~~~---------~~~~-----------~~~---~~~~~~~~~~~~l~i~~v----~~~d~G~Y~--C~a~n~~g~~~~~  314 (325)
                      ..-.         ..+.           ..+   .+...+.++...+.-..-    +....|.|.  -.|.|.+....+.
T Consensus      2040 ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~sHtY~r~G~Y~V~V~a~N~VS~~~a~ 2119 (2740)
T TIGR00864      2040 DALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAEHEYLHPGDYRVQVNASNLVSFFSAH 2119 (2740)
T ss_pred             eheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeEEEecCCccEEEEEEEEcceeeeeeE
Confidence            2110         0000           111   112223333222211111    133468885  4578999998888


Q ss_pred             EEEEEecc
Q psy1095         315 ASVAVEGR  322 (325)
Q Consensus       315 ~~l~V~~~  322 (325)
                      ++|.|...
T Consensus      2120 ~~i~V~vl 2127 (2740)
T TIGR00864      2120 AEINVQVL 2127 (2740)
T ss_pred             EEEEEEEe
Confidence            88888754

Note: this model has been restricted to the amino half because for technical reasons.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=95.08  E-value=0.18  Score=41.95  Aligned_cols=23  Identities=17%  Similarity=0.499  Sum_probs=21.0

Q ss_pred             cEEEEEEEEecCCCCCeeEEeeC
Q psy1095         181 SVTFECQVQVVPPNDHDISWFRN  203 (325)
Q Consensus       181 ~v~l~C~~~~~~~~~~~~~W~~~  203 (325)
                      .++|.|.+.|+.|....+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999999887789999999

>PHA02982 hypothetical protein; Provisional

Probab=94.88  E-value=0.096  Score=39.78  Aligned_cols=76  Identities=14%  Similarity=0.292  Sum_probs=48.7

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCC-----------------CCceEEEecCCcceeEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDS-----------------DMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      ++....++.|.|.|.......- ....|+.+......+.                 ......+.++    ..++|+|.++
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i-~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g----~~STLTIkk~  107 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEI-SRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG----NSSTFTMKKP  107 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchh-hhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec----cceeEEeccC
Confidence            3455679999999985322221 4688988543322100                 1111222233    5689999999


Q ss_pred             CCCCCeEEEEEEEeCCCc
Q psy1095         236 YPEDEGEFTCRVANELGE  253 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~~~~~  253 (325)
                      ..+..|=|+|.+....+.
T Consensus       108 ~i~N~GCYtc~~ks~~~k  125 (251)
T PHA02982        108 DPQNLGCFTCEAKDAEGK  125 (251)
T ss_pred             CcccCCceEEEEecCCCc
Confidence            999999999999886543

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.73  E-value=0.052  Score=42.86  Aligned_cols=49  Identities=14%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       195 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +|.+.|.-++.....+.. ....+..       +.|.+.+...+++|.|+|......
T Consensus        12 DP~y~W~GP~g~~l~gn~-~~nIT~T-------G~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNS-YVNITET-------GKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCceEEECCCCcccCCCC-eEEEccC-------ceEEeeccccccCCceEEEEEEEe
Confidence            378999986555443332 2222233       489999999999999999988765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=94.60  E-value=0.38  Score=31.71  Aligned_cols=69  Identities=16%  Similarity=0.338  Sum_probs=43.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEe-----cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTG-----QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      +.|+...+..|.+++..|....     .....+.|..++..++.+ ++....+ ....+++.+.....+-.|-|..
T Consensus         8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~in~-~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVIND-TVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEEST-TEEEEEESS--SSEEEEEEEEE
T ss_pred             EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-HcceeCC-eEEEEEEccCCCCCceEEEEEE
Confidence            3455566889999999999853     245578999988866644 4444433 3366777777766666666654

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>KOG4597|consensus

Probab=94.22  E-value=0.12  Score=44.29  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=64.7

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee---CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR---NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      +....+..+++..++|.+.|.+.  +.|.|.+   ++..+......    ..++-.......|.|-+....|+|-|+|.+
T Consensus       203 pa~w~vg~wetcS~tCg~~G~q~--r~V~c~qv~anr~~vv~~~nq----~~e~p~vtstcql~ic~ewq~~a~w~tCs~  276 (560)
T KOG4597|consen  203 PAEWFVGDWETCSSTCGVQGRQY--RVVTCEQVFANRENVVMRPNQ----TVENPVVTSTCQLVICNEWQADAGWYTCSA  276 (560)
T ss_pred             cchhhcccchhhcccccccCCcC--ceeeeehhhccccceeecCcc----ccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence            34456778999999999999888  8899975   33222211110    011222335678999999999999999999


Q ss_pred             EeCCCcEEeEEEEEEEee
Q psy1095         248 ANELGEVVTSACLIVDVV  265 (325)
Q Consensus       248 ~~~~~~~~~~~~l~v~~~  265 (325)
                      .+..|...+.+.+.+...
T Consensus       277 rcg~g~~~rdv~c~s~~g  294 (560)
T KOG4597|consen  277 RCGAGFLRRDVPCSSVKG  294 (560)
T ss_pred             ccccceeeccceeeeecc
Confidence            999999999888887544

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.81  E-value=0.5  Score=39.34  Aligned_cols=38  Identities=11%  Similarity=0.234  Sum_probs=24.8

Q ss_pred             ccCCCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeC
Q psy1095          61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKD  102 (325)
Q Consensus        61 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~  102 (325)
                      ....||.+.+.-..   ..+ .++|+|.+.|. | ...+.|.|+
T Consensus       199 ~R~vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        199 PKPVTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CCCCCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence            34467776553221   123 68999999994 5 346799999

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=93.79  E-value=3.8  Score=34.86  Aligned_cols=164  Identities=14%  Similarity=0.196  Sum_probs=87.9

Q ss_pred             ceEecCCCeEEEEEEEEe---cCCCeeEEeeCCeeCCC-----------------CCcEEEEec------CCeEEEEEcc
Q psy1095          74 NKICDLGDTVRFQCSVTG---QPAPWTSWSKDGKPATP-----------------NARVTIREK------EDLRFLEISE  127 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~---~p~~~v~W~~~~~~~~~-----------------~~~~~~~~~------~~~~~l~i~~  127 (325)
                      ...+..|..|.|.|.++-   .......|+-.+-++.+                 ...+.+...      -..++|+|..
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            345667999999999853   23346789876544321                 122222221      1246799999


Q ss_pred             CCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCC-cEEEEEEEEecCCCCCeeEEeeCCEE
Q psy1095         128 VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD-SVTFECQVQVVPPNDHDISWFRNNRL  206 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~-~v~l~C~~~~~~~~~~~~~W~~~~~~  206 (325)
                      +...++|-|.|++....-..+...-|.|...       .+     -....+|. .-...|-+-......+.+.|.-+|..
T Consensus       353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-------V~-----f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~  420 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEECRHCFKVADH-------VF-----FKWNTEGDNETKVACYAAQYDMQPFSILWKSNGVS  420 (500)
T ss_pred             EEEEcCCceEEEEecCcchhhhhhheEeccE-------EE-----EEEEeccCceEEEEEEEEecccCCceeEEEEccEE
Confidence            9999999999999765433333333333221       11     01222333 45578877554222278999987765


Q ss_pred             eccCCCCceEEEecCC--cceeEEEEEeCCCCCCC-CeEEEEEEEeC
Q psy1095         207 IKLDSDMKPEVQVDSK--ENLVIARLKIPHVYPED-EGEFTCRVANE  250 (325)
Q Consensus       207 ~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~  250 (325)
                      ..-....... ...+.  .....+.+.|.+-...| --.-.|+..-.
T Consensus       421 ~~G~~~~~l~-~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg  466 (500)
T PHA02914        421 FGGEIADALD-EHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITG  466 (500)
T ss_pred             ecCeecCccc-ccccccccccceEEEEEecccCccccccceEEEecC
Confidence            4311110000 00000  01233567777666556 44566765443

>PHA03042 CD47-like protein; Provisional

Probab=93.60  E-value=0.37  Score=38.42  Aligned_cols=75  Identities=12%  Similarity=0.070  Sum_probs=51.4

Q ss_pred             CCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEE
Q psy1095         238 EDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV  317 (325)
Q Consensus       238 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  317 (325)
                      .|.=.-.|.+.|.....-.+..+.|.+.+......++. +      ..+|.++. +..-.|+|+|+|.+........++|
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n------~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeL  102 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-N------TSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIEL  102 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-c------ceEEEEec-cccCCCceeEEEeecccCccEEEEE
Confidence            34556778888877666678889997776666555544 1      24566543 4445899999999877766666666


Q ss_pred             EEe
Q psy1095         318 AVE  320 (325)
Q Consensus       318 ~V~  320 (325)
                      +-+
T Consensus       103 k~~  105 (286)
T PHA03042        103 QYV  105 (286)
T ss_pred             EEE
Confidence            654

>TIGR00864 PCC polycystin cation channel protein

Probab=93.25  E-value=15  Score=39.99  Aligned_cols=189  Identities=13%  Similarity=0.199  Sum_probs=101.0

Q ss_pred             CcccCCCCCCCcccccccccc--cc-----cccC-CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCee-CC
Q psy1095          37 PRSISPLSSRTFTPYSLNSAI--RT-----RRLT-SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-AT  107 (325)
Q Consensus        37 i~~v~~~d~G~Y~c~~~~~~~--~~-----~~~~-~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~-~~  107 (325)
                      .-.+...+.|.|.-.....+.  ..     ..+. ....+.+......+..|+.|.|.-...+.....++|...+.. ..
T Consensus      1661 ~~~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~ 1740 (2740)
T TIGR00864      1661 GAKLNPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE 1740 (2740)
T ss_pred             eeEEecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc
Confidence            335666788888755322221  11     1111 222333344445567799999987666666678899865532 11


Q ss_pred             CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE--EeCCeeEEEEEEEEEECCCcccCCCeeeecCc-C-eeEecCCcEE
Q psy1095         108 PNARVTIREKEDLRFLEISEVTLEDAGLYTIKV--ENNYGSVEATARLEIMDPRAIISRPKVLNGLE-N-LRCCDGDSVT  183 (325)
Q Consensus       108 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~-~-~~v~~g~~v~  183 (325)
                      ....+.             .-+-...|.|...+  .|..+....+..+.|..+.   ....+..... . ..+..|..+.
T Consensus      1741 ~s~p~~-------------tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV---~GL~i~~~~~~~~~~~~ag~~v~ 1804 (2740)
T TIGR00864      1741 TSEPFM-------------SHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPI---SGLKIRAADAGEQNFFAADSSVC 1804 (2740)
T ss_pred             cCCCce-------------EEEccCCceEEEEEEEEccccccceeEEEEEEecc---ccceEecCCCCcccceecCcEEE
Confidence            111100             01234567887654  5777777777777777652   2233332221 1 1455677787


Q ss_pred             EEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE--EEeCCCcEEeEEEEE
Q psy1095         184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR--VANELGEVVTSACLI  261 (325)
Q Consensus       184 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~  261 (325)
                      |.-.+....+  ..+.|..++..-..+..               ..     .+..++|.|+-.  |.|..+....+..+.
T Consensus      1805 F~a~vstGsn--Vsw~W~f~~g~s~~gk~---------------v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~ 1862 (2740)
T TIGR00864      1805 FQGELATGTN--VSWCWAIDGGSSKMGKH---------------AC-----MTFPDAGTFAIRLNASNAVSGKSASREFF 1862 (2740)
T ss_pred             EEEEccCCCe--eEEEEEeCCCCccccce---------------eE-----EecCCCeEEEEEEEEEcccCcceeeeeEE
Confidence            7766543334  67788776432111111               11     334567888764  557666665555555


Q ss_pred             EE
Q psy1095         262 VD  263 (325)
Q Consensus       262 v~  263 (325)
                      |+
T Consensus      1863 VQ 1864 (2740)
T TIGR00864      1863 AE 1864 (2740)
T ss_pred             EE
Confidence            53

Note: this model has been restricted to the amino half because for technical reasons.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.14  E-value=1.3  Score=28.46  Aligned_cols=52  Identities=15%  Similarity=0.132  Sum_probs=33.3

Q ss_pred             CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE-EeCCCcEEeEEEEEE
Q psy1095         195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV-ANELGEVVTSACLIV  262 (325)
Q Consensus       195 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~-~~~~~~~~~~~~l~v  262 (325)
                      .+.+.|...+.......                ..+.....+..|+|.+.|.| .+..........+.+
T Consensus        26 ~~~~~l~~~~~k~~~~~----------------~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKSLETK----------------KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEEEEES----------------SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCccccccc----------------eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            36777776655443221                24556677789999999999 565555555555544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.59  E-value=0.46  Score=32.10  Aligned_cols=35  Identities=29%  Similarity=0.463  Sum_probs=25.9

Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEEEE
Q psy1095         121 RFLEISEVTLEDAGLYTIKVENNYGSV-EATARLEI  155 (325)
Q Consensus       121 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v  155 (325)
                      -+|.|..+++.|+|.|.-++++..|.. .+.+.+.|
T Consensus        71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   71 LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            469999999999999999999988854 34444444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG1026|consensus

Probab=92.24  E-value=0.45  Score=44.17  Aligned_cols=202  Identities=12%  Similarity=0.081  Sum_probs=101.8

Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      ..+..|..+++.|...+.|.|...|+.++............-. . ....+.        ++.|...+..+.....+.+.
T Consensus       202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~-~~~~~~--------~~~c~~E~~~~~~~~~v~~~  271 (774)
T KOG1026|consen  202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-S-ECEVLE--------NDLCIAENAVARSNPSILLV  271 (774)
T ss_pred             hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-c-cceeee--------chhhHHHHhhhhcCceeeeE
Confidence            4467789999999999999999999987655443221110000 0 011111        17888887776655555555


Q ss_pred             EECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecC-CCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC
Q psy1095         155 IMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       155 v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      +..++.....    ..+.      ++  .-.|...+.+ ++.+...|..++..+.............      ..-+...
T Consensus       272 ~~~p~~~~~~----~~~~------~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~------~~C~~~~  333 (774)
T KOG1026|consen  272 VDLPKAEVLL----CSPL------SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGK------EQCLPWN  333 (774)
T ss_pred             EecccccccC----CCCc------cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccC------cCCcccC
Confidence            4433111000    0000      00  2234433322 2226778888776654433322221111      0122333


Q ss_pred             CCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC-eecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEE
Q psy1095         234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG-KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS  305 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~  305 (325)
                      ..+-.+.|.|+|.+.+..|.........+...+. ..+..+..+.....+ .....++....++...++|.+-
T Consensus       334 ~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P~~~~~~~~~~~~~~~~~-~ps~~~~~~~~~~~~~~~~i~g  405 (774)
T KOG1026|consen  334 DPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRPWMYCFDNDKTFEPSLCD-IPSCDIKDKKSEDPTGISAIVG  405 (774)
T ss_pred             cCcccccCcceeeecccCccccccCcCccccCCCccccccccccCcccCC-CCCcccccccccCCcceEEEec
Confidence            3356678999999999888776655554433332 111111111111111 2235555666666666766664

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=91.60  E-value=0.67  Score=31.34  Aligned_cols=42  Identities=26%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             EEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEE-eEEEEEE
Q psy1095         278 IITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS-CYASVAV  319 (325)
Q Consensus       278 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V  319 (325)
                      +.+......|.|+.+...|+|.|.-+++|..|... ..+.+.|
T Consensus        64 ~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   64 FNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             EEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             EeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            34455555899999999999999999999999763 3466665

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=91.15  E-value=3.1  Score=27.51  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      .+.+.|....|..|+++.+.|...- +.| .+-|.-.      -.+..+.....=..+.+.+++. | ..-.|.+.-...
T Consensus         5 ~v~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~------L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~   75 (91)
T PF03921_consen    5 EVRVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETS------LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGE   75 (91)
T ss_dssp             -EEEESSEEEEETTEEEEEEEEESS-SS-SEEEEESS------SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTE
T ss_pred             EEEEECCccEECCCCCEEEEEcCCC-CCCCcceEEEe------cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCe
Confidence            3556788888999999999999742 333 3344321      0111122222234577788886 4 466899877655


Q ss_pred             eEEEEEEEEEECCC
Q psy1095         146 SVEATARLEIMDPR  159 (325)
Q Consensus       146 ~~~~~~~l~v~~~~  159 (325)
                      ...++..|+|+..|
T Consensus        76 Q~~~~~~ItVY~~P   89 (91)
T PF03921_consen   76 QSSASANITVYKPP   89 (91)
T ss_dssp             EEEEEEEEEEEB--
T ss_pred             EEEeEEeeEEeCCC
Confidence            66778888988764

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.00  E-value=2.9  Score=26.93  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=20.6

Q ss_pred             EEEccCCCCCCeEEEEEEE-eCCeeEEEEEEEE
Q psy1095         123 LEISEVTLEDAGLYTIKVE-NNYGSVEATARLE  154 (325)
Q Consensus       123 l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~  154 (325)
                      ..+...+..|+|.+.|.+. +..-.......+.
T Consensus        45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~   77 (80)
T PF05790_consen   45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEIL   77 (80)
T ss_dssp             EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred             EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence            4556677899999999994 4433333344443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=90.89  E-value=6.3  Score=30.62  Aligned_cols=103  Identities=16%  Similarity=0.244  Sum_probs=51.7

Q ss_pred             CeeEEeeCCeeCCCCC---cEEEEecCC---eEEEEE-ccCCCCCCeEEEEEEEeCCe-eEEEEEEEEEECCCcccCCCe
Q psy1095          95 PWTSWSKDGKPATPNA---RVTIREKED---LRFLEI-SEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPK  166 (325)
Q Consensus        95 ~~v~W~~~~~~~~~~~---~~~~~~~~~---~~~l~i-~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~p~  166 (325)
                      ..++||.|+.++....   ......++.   .++|.+ .+...+..-+.+|.+.-... ......  .....|.+..+|.
T Consensus         7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~--~a~~~P~Vy~~P~   84 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRF--NATATPSVYPKPR   84 (211)
T ss_pred             EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEe--ecccccceecCCE
Confidence            3679999999886432   222222221   234555 22333444588999854322 122221  2223333344455


Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEe
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI  207 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~  207 (325)
                      +....     ..|   ...|.+.=-|.....+.|.-++...
T Consensus        85 vsv~F-----~~g---~AVC~A~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   85 VSVRF-----EDG---YAVCTARCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             EEEEe-----cCC---EEEEEcceeeCCCeEEEEEECCccC
Confidence            54322     223   4457665444333789999877653

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=88.89  E-value=5  Score=26.54  Aligned_cols=82  Identities=16%  Similarity=0.100  Sum_probs=48.8

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE--EeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR--LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      ...+....|..|+.+.+.|..+=..+  ..+.|.-.-.  .+..+..              =..+.|.+++. | ....|
T Consensus         7 ~v~P~~~vV~~G~Sv~VNCStsC~~p--~~~GLET~L~k~~~~~g~~--------------W~~f~LsnV~~-d-s~~~C   68 (91)
T PF03921_consen    7 RVSPEEPVVPPGGSVWVNCSTSCPQP--EKIGLETSLSKTELDSGPQ--------------WKAFQLSNVTE-D-SSPLC   68 (91)
T ss_dssp             EEESSEEEEETTEEEEEEEEESSSS---SEEEEESSSEEEEEEEETT--------------EEEEEEEEE-S-C-EEEEE
T ss_pred             EEECCccEECCCCCEEEEEcCCCCCC--CcceEEEecCCcccCCCCc--------------EEEEEEEcccc-C-CeEEE
Confidence            34445667889999999998742222  3455643211  1111111              13577788875 4 47789


Q ss_pred             EEEeCCCcEEeEEEEEEEeeCC
Q psy1095         246 RVANELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       246 ~~~~~~~~~~~~~~l~v~~~~~  267 (325)
                      .+.-.......++.++|+..+.
T Consensus        69 ~~~C~g~Q~~~~~~ItVY~~Pe   90 (91)
T PF03921_consen   69 FFNCSGEQSSASANITVYKPPE   90 (91)
T ss_dssp             EEEETTEEEEEEEEEEEEB--S
T ss_pred             EEEcCCeEEEeEEeeEEeCCCC
Confidence            9987666667788888866543

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=87.71  E-value=6  Score=26.00  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=41.4

Q ss_pred             CCCCeeEecCCceEe--cCC--CeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEE
Q psy1095          63 TSSPRFYAVPHNKIC--DLG--DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v--~~g--~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      ..++.|+.++....+  ..+  +...|.+.+.+. ...+.||-|+..+......        ..+.+   .....|.|+-
T Consensus         8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~---~~~~~G~h~l   75 (89)
T PF06832_consen    8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFW---QPDRPGEHTL   75 (89)
T ss_pred             CCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEe---CCCCCeeEEE
Confidence            345666655554332  222  245555566554 4489999999998332211        11222   3356788888


Q ss_pred             EEEeCCeeE
Q psy1095         139 KVENNYGSV  147 (325)
Q Consensus       139 ~~~~~~~~~  147 (325)
                      .+.+..|..
T Consensus        76 ~vvD~~G~~   84 (89)
T PF06832_consen   76 TVVDAQGRS   84 (89)
T ss_pred             EEEcCCCCE
Confidence            887766643

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03283 envelope glycoprotein E; Provisional

Probab=87.64  E-value=15  Score=32.77  Aligned_cols=82  Identities=18%  Similarity=0.265  Sum_probs=50.3

Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCC--C------------eee-ecCcCeeEecCCcEEEE
Q psy1095         121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR--P------------KVL-NGLENLRCCDGDSVTFE  185 (325)
Q Consensus       121 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~--p------------~~~-~~~~~~~v~~g~~v~l~  185 (325)
                      ..|.|.+++..++|.|+-...+..+.....+.|.|..+.....+  |            .|. ..-......+|+++.+.
T Consensus       134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls  213 (542)
T PHA03283        134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS  213 (542)
T ss_pred             CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence            45999999999999999998877664555566677653222111  1            111 11122344579988887


Q ss_pred             EEEEecC---CCCCeeEEee
Q psy1095         186 CQVQVVP---PNDHDISWFR  202 (325)
Q Consensus       186 C~~~~~~---~~~~~~~W~~  202 (325)
                      -......   +-...+.|+.
T Consensus       214 i~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        214 VHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             EEEeeccCCCCceEEEEEEE
Confidence            6664322   1125788986

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=87.62  E-value=3.8  Score=27.04  Aligned_cols=68  Identities=19%  Similarity=0.357  Sum_probs=40.9

Q ss_pred             cCeeEecCCcEEEEEEEEecCC---CCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPP---NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      +...+..|+.++..|.....-.   ....+.|..++..++.+... .   ...    ..+.+++.+.....+-.|-|..
T Consensus        11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~-~---in~----~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYR-V---IND----TVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEE-E---EST----TEEEEEESS--SSEEEEEEEEE
T ss_pred             CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcc-e---eCC----eEEEEEEccCCCCCceEEEEEE
Confidence            3556889999999999863211   22578899988866543321 1   122    2367888887766666666664

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03052 Hypothetical protein; Provisional

Probab=87.08  E-value=1.3  Score=26.99  Aligned_cols=35  Identities=20%  Similarity=0.435  Sum_probs=26.5

Q ss_pred             CCceEecCCCeEEEEEEEE-ec--CCCeeEEeeCCeeC
Q psy1095          72 PHNKICDLGDTVRFQCSVT-GQ--PAPWTSWSKDGKPA  106 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~-~~--p~~~v~W~~~~~~~  106 (325)
                      |..+.+..|..++|.|.+. +.  ..+.|.|.-|+..+
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            4566788999999999984 32  24578898888766

>PHA03052 Hypothetical protein; Provisional

Probab=86.19  E-value=4.6  Score=24.74  Aligned_cols=40  Identities=30%  Similarity=0.625  Sum_probs=29.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCC-CCCeeEEeeCCEEeccCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPP-NDHDISWFRNNRLIKLDS  211 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~-~~~~~~W~~~~~~~~~~~  211 (325)
                      ....+..|..++|.|.+.-.++ ..+-+.|..|+..+...+
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d   45 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD   45 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence            3456778999999999975443 346789999988875443

>PHA03189 UL14 tegument protein; Provisional

Probab=85.76  E-value=12  Score=30.69  Aligned_cols=74  Identities=19%  Similarity=0.291  Sum_probs=40.4

Q ss_pred             cCCceEecCCCeEEEEEEEEe--cCCCeeE-----Eee----------CCeeCCC-------CCcEEEEecCCeEEEEEc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTG--QPAPWTS-----WSK----------DGKPATP-------NARVTIREKEDLRFLEIS  126 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~--~p~~~v~-----W~~----------~~~~~~~-------~~~~~~~~~~~~~~l~i~  126 (325)
                      .|.+..+.+|+.+++.|.+..  .|...|.     |--          .|..+..       ..+......+-...|+++
T Consensus        58 spAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLt  137 (348)
T PHA03189         58 SPAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLT  137 (348)
T ss_pred             CCCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEE
Confidence            355666889999999999854  3443332     211          1111211       112222222223334332


Q ss_pred             -cCCCCCCeEEEEEEEeCC
Q psy1095         127 -EVTLEDAGLYTIKVENNY  144 (325)
Q Consensus       127 -~~~~~d~G~Y~C~~~~~~  144 (325)
                       ++..+-+|.|.|...|..
T Consensus       138 F~v~t~taG~Y~CvLrN~t  156 (348)
T PHA03189        138 FRVSTSTAGMYECVLRNET  156 (348)
T ss_pred             EEEEecccceEEEEecccc
Confidence             566677999999998764

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=81.72  E-value=5.8  Score=35.02  Aligned_cols=31  Identities=13%  Similarity=0.004  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCcccCCCCCCCcccccccccc
Q psy1095          27 TPRSTPRSTPPRSISPLSSRTFTPYSLNSAI   57 (325)
Q Consensus        27 ~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~   57 (325)
                      ....+.+.|.|.+++.+|+|.|+=+..+...
T Consensus        83 ~~~~~~~~l~i~~a~~~~~GvY~l~~~~~~~  113 (439)
T PF02480_consen   83 RLTFNKGGLSILNATEQDSGVYTLYVRNDSG  113 (439)
T ss_dssp             -------------------------------
T ss_pred             ceeecCCceEEeccccccCeeEEEEecCCCC
Confidence            3344457899999999999999988765443

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03283 envelope glycoprotein E; Provisional

Probab=80.37  E-value=5.8  Score=35.11  Aligned_cols=39  Identities=31%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       283 ~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                      ....|.|.+++.+++|.|+-...|..+.....+.|+|++
T Consensus       132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~  170 (542)
T PHA03283        132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK  170 (542)
T ss_pred             CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence            345699999999999999999999888777778899987

>KOG1026|consensus

Probab=80.35  E-value=0.59  Score=43.42  Aligned_cols=71  Identities=7%  Similarity=-0.035  Sum_probs=43.1

Q ss_pred             CCCcccCCCCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCC
Q psy1095          35 TPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT  107 (325)
Q Consensus        35 l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~  107 (325)
                      .....+.+.+.+-|.|............ . +.+.....+.+...+++..+.|.+.+.+...+.|.++...+.
T Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   94 (774)
T KOG1026|consen   24 FKGEALATPAECVCSLSENGCSEPTKGV-Y-LPLLEPLNNITEIFIENGQLLCIVSGNDVENYTGLRNLTIVV   94 (774)
T ss_pred             cccccCCCCcccccccccccCcCccccc-c-cccccchhhHHHHHHhhhhhcccccCCCcccchhhhccCccc
Confidence            3455777888888877654443333333 1 222222334445567888889998877666888888765443

>PHA03189 UL14 tegument protein; Provisional

Probab=80.21  E-value=13  Score=30.44  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=17.4

Q ss_pred             EEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         228 ARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       228 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      .+|++. +..+-+|.|.|...|.....
T Consensus       134 ltLtF~-v~t~taG~Y~CvLrN~tHgl  159 (348)
T PHA03189        134 LTLTFR-VSTSTAGMYECVLRNETHGL  159 (348)
T ss_pred             EEEEEE-EEecccceEEEEecccccee
Confidence            344443 44567999999998865433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-17
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-13
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		2e-13
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		2e-13
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-13
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		1e-12
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		2e-12
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		2e-12
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		2e-12
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		2e-12
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		3e-12
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		3e-12
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		3e-12
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		3e-12
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		3e-12
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		2e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		3e-12
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		4e-12
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		7e-12
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		8e-12
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		5e-10
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		9e-10
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		9e-10
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-09
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		2e-05
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		1e-09
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		1e-09
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		2e-09
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		3e-09
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		3e-09
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		7e-09
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-08
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		9e-08
3kld_A	384	Ptprg Cntn4 Complex Length = 384		9e-08
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-07
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		3e-07
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		3e-07
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		4e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		4e-07
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		6e-07
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		1e-06
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		1e-06
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-06
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-06
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		5e-04
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-06
3caf_A	100	Crystal Structure Of Hfgfr2 D2 Domain Length = 100		1e-06
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		1e-06
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		1e-06
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		1e-06
1wvz_A	104	Solution Structure Of The D2 Domain Of The Fibrobla		2e-06
3dar_A	105	Crystal Structure Of D2 Domain From Human Fgfr2 Len		2e-06
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		2e-06
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		2e-06
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		3e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		6e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		1e-05
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-05
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-05
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		2e-05
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-05
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		3e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		4e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		5e-05
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		4e-05
3r4d_A	208	Crystal Structure Of Mouse Coronavirus Receptor-Bin		4e-05
2kkq_A	116	Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom		4e-05
2kkq_A	116	Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom		9e-05
1l6z_A	216	Crystal Structure Of Murine Ceacam1a[1,4]: A Corona		4e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		6e-05
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		7e-05
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		7e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		8e-05
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		5e-04
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		8e-04

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 130/311 (41%), Gaps = 56/311 (18%)
Query: 53  LNSAIRTRRLTSS-----PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT 107
           L +A  + +LT S     P F   P +    LG++  F+C VTG      +W+KD +   
Sbjct: 180 LGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR 239
Query: 108 PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
           P     +   E+   L + +VT  DAG YT    N  G    +A+L + +P      P+ 
Sbjct: 240 PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------PRF 293
Query: 168 LNGLENLRCCDGDSVT-FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
           +  LE  R    D  T +EC++   P  +  + W+++   I+  S  +    V+S     
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIGGSP--EIKVLWYKDETEIQESSKFRMSF-VES----- 345
Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI-------------VDVVKGKD---- 269
           +A L++ ++  ED G++TC   N  G   +S  L              V+ +KG D    
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 405
Query: 270 -------------------LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS 310
                              L S  +  I++    + + I ++   D G+YQ   SN  GS
Sbjct: 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 465
Query: 311 DSCYASVAVEG 321
           D+C  S+ ++ 
Sbjct: 466 DTCVGSITLKA 476

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 67  RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEI 125
           + +AVP  K      TV+F+C  +G P P   W K+GK   P+ R+   + +     + +
Sbjct: 25  KLHAVPAAK------TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 78
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTF 184
             V   D G YT  VEN YGS+  T +L++++      RP +  GL  N     G +V F
Sbjct: 79  DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSP--HRPILQAGLPANKTVALGSNVEF 136
Query: 185 ECQVQVVPPNDHDISWFRNNRL--IKLDSDMKPEVQV--DSKENLVIARLKIPH---VYP 237
            C+V   P     I W ++  +   K+  D  P VQ+   +  N     +++ H   V  
Sbjct: 137 MCKVYSDP--QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 194
Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
           ED GE+TC   N +G    SA L V
Sbjct: 195 EDAGEYTCLAGNSIGLSHHSAWLTV 219

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 67  RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEI 125
           + +AVP  K      TV+F+C  +G P P   W K+GK   P+ R+   + +     + +
Sbjct: 24  KLHAVPAAK------TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 77
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTF 184
             V   D G YT  VEN YGS+  T +L++++      RP +  GL  N     G +V F
Sbjct: 78  DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSP--HRPILQAGLPANKTVALGSNVEF 135
Query: 185 ECQVQVVPPNDHDISWFRNNRL--IKLDSDMKPEVQV--DSKENLVIARLKIPH---VYP 237
            C+V   P     I W ++  +   K+  D  P VQ+   +  N     +++ H   V  
Sbjct: 136 MCKVYSDP--QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 193
Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
           ED GE+TC   N +G    SA L V
Sbjct: 194 EDAGEYTCLAGNSIGLSHHSAWLTV 218

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 67  RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEI 125
           + +AVP  K      TV+F+C  +G P P   W K+GK   P+ R+   + +     + +
Sbjct: 24  KLHAVPAAK------TVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 77
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTF 184
             V   D G YT  VEN YGS+  T +L++++      RP +  GL  N     G +V F
Sbjct: 78  DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSP--HRPILQAGLPANKTVALGSNVEF 135
Query: 185 ECQVQVVPPNDHDISWFRNNRL--IKLDSDMKPEVQV--DSKENLVIARLKIPH---VYP 237
            C+V   P     I W ++  +   K+  D  P VQ+   +  N     +++ H   V  
Sbjct: 136 MCKVYSDP--QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 193
Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
           ED GE+TC   N +G    SA L V
Sbjct: 194 EDAGEYTCLAGNSIGLSHHSAWLTV 218

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 25/222 (11%)
Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
            PY  N+    +RL + P F            +TV+F+C   G P P   W K+GK    
Sbjct: 15  APYWTNTEKMEKRLHAVPAF------------NTVKFRCPAGGNPMPTMRWLKNGKEFKQ 62
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             R+   +  +  +  I E V   D G YT  VEN YGS+  T  L++++      RP +
Sbjct: 63  EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 120
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
             GL  N     G  V F C+V     P+   I W ++      K   D  P ++V    
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 224 NLVIAR---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            +  +    L + +V   D GE+ C+V+N +G+   SA L V
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 13/191 (6%)
Query: 81  DTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTIK 139
           +TVRF+C   G P P  SW K+G+      R+  I+ +     L +  V   D G YT  
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 198
Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTFECQVQVVPPNDHDI 198
           VEN +GS+  T  L++++      RP +  GL  N     G  V F C  +V       I
Sbjct: 199 VENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHC--KVYSDAQPHI 254
Query: 199 SWFRNNRL--IKLDSDMKPEVQV-----DSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251
            W ++  +   K+  D  P V V      +  +  +  L + +V  ED GE+TC   N +
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Query: 252 GEVVTSACLIV 262
           G    SA L+V
Sbjct: 315 GFSHHSAWLVV 325

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 97/222 (43%), Gaps = 25/222 (11%)
Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
            PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK    
Sbjct: 14  APYWTNTEKXEKRL------HAVP------AANTVKFRCPAGGNPXPTXRWLKNGKEFKQ 61
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             R+   +  +  +  I E V   D G YT  VEN YGS+  T  L++++      RP +
Sbjct: 62  EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 119
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
             GL  N     G  V F C+V     P+   I W ++      K   D  P ++V    
Sbjct: 120 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKHS 176
Query: 224 NLVIAR---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            +  +    L + +V   D GE+ C+V+N +G+   SA L V
Sbjct: 177 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
            PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK    
Sbjct: 7   APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 54
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             R+   +  +  +  I E V   D G YT  VEN YGS+  T  L++++      RP +
Sbjct: 55  EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 112
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
             GL  N     G  V F C+V     P+   I W ++      K   D  P ++V    
Sbjct: 113 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
            +      I  L I +V  ED GE+TC   N +G    SA L V    G++
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 220

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
            PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK    
Sbjct: 6   APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 53
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             R+   +  +  +  I E V   D G YT  VEN YGS+  T  L++++      RP +
Sbjct: 54  EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 111
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
             GL  N     G  V F C+V     P+   I W ++      K   D  P ++V    
Sbjct: 112 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 168
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
            +      I  L I +V  ED GE+TC   N +G    SA L V    G++
Sbjct: 169 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 219

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
            PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK    
Sbjct: 7   APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 54
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             R+   +  +  +  I E V   D G YT  VEN YGS+  T  L++++      RP +
Sbjct: 55  EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRPIL 112
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
             GL  N     G  V F C+V     P+   I W ++      K   D  P ++V    
Sbjct: 113 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
            +      I  L I +V  ED GE+TC   N +G    SA L V    G++
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 220

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
            PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK    
Sbjct: 5   APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 52
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             R+   +  +  +  I E V   D G YT  VEN YGS+  T  L++++      RP +
Sbjct: 53  EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRPIL 110
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
             GL  N     G  V F C+V     P+   I W ++      K   D  P ++V    
Sbjct: 111 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 167
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
            +      I  L I +V  ED GE+TC   N +G    SA L V    G++
Sbjct: 168 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 218

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR--VTIREKEDL 120
           T +P F     + +   G T  F+  ++G P P  SW +DG+  + +    V I   +  
Sbjct: 3   TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
             L I  VT  ++G Y++K  N  G   +TA L +   +A  + P  +  L+++    G 
Sbjct: 63  AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQGS 119
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
            V  + +V  +P     + ++R+   I+   D     Q+  + +L    L I   YPED 
Sbjct: 120 QVRLQVRVTGIP--TPVVKFYRDGAEIQSSLDF----QISQEGDLY--SLLIAEAYPEDS 171
Query: 241 GEFTCRVANELGEVVTSACLIVD 263
           G ++    N +G   ++A L+V 
Sbjct: 172 GTYSVNATNSVGRATSTAELLVQ 194

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
            PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK    
Sbjct: 7   APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 54
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             R+   +  +  +  I E V   D G YT  VEN YGS+  T  L++++      RP +
Sbjct: 55  EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE--RWPHRPIL 112
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
             GL  N     G  V F C+V     P+   I W ++      K   D  P ++V    
Sbjct: 113 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
            +      I  L I +V  ED GE+TC   N +G    SA L V    G++
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 220

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
            PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK    
Sbjct: 7   APYWTNTEKXEKRL------HAVP------AANTVKFRCPAGGNPXPTXRWLKNGKEFKQ 54
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             R+   +  +  +  I E V   D G YT  VEN YGS+  T  L++++      RP +
Sbjct: 55  EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 112
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
             GL  N     G  V F C+V     P+   I W ++      K   D  P ++V    
Sbjct: 113 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            +      I  L I +V  ED GE+TC   N +G    SA L V
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR--VTIREKEDL 120
           T +P F     + +   G T  F+  ++G P P  SW +DG+  + +    V I   +  
Sbjct: 3   TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
             L I  VT  ++G Y++K  N  G   +TA L +   +A  + P  +  L+++    G 
Sbjct: 63  AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQGS 119
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
            V  + +V  +P     + ++R+   I+   D     Q+  + +L    L I   YPED 
Sbjct: 120 QVRLQVRVTGIP--TPVVKFYRDGAEIQSSLDF----QISQEGDLY--SLLIAEAYPEDS 171
Query: 241 GEFTCRVANELGEVVTSACLIVD 263
           G ++    N +G   ++A L+V 
Sbjct: 172 GTYSVNATNSVGRATSTAELLVQ 194

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 45/196 (22%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P     L+++   +G + TFE  +   P    ++SWFR+ ++I   +   P VQ+   + 
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFP--VPEVSWFRDGQVI--STSTLPGVQISFSDG 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD--------------------- 263
              A+L IP V   + G ++ +  N  G+  ++A L+V                      
Sbjct: 62  R--AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS 119
Query: 264 --------------VVK----GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
                         VVK    G ++ S     I   G    L I +   +DSG Y V+ +
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179
Query: 306 NQHGSDSCYASVAVEG 321
           N  G  +  A + V+G
Sbjct: 180 NSVGRATSTAELLVQG 195

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 51/293 (17%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P F   P +    LG++  F+C VTG      +W+KD +   P     +   E+   L +
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT-F 184
            +VT  DAG YT    N  G    +A+L + +P      P+ +  LE  R    D  T +
Sbjct: 66  LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------PRFIKKLEPSRIVKQDEHTRY 119
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
           EC++   P  +  + W+++   I+  S  +    V+S     +A L++ ++  ED G++T
Sbjct: 120 ECKIGGSP--EIKVLWYKDETEIQESSKFRMSF-VES-----VAVLEMYNLSVEDSGDYT 171
Query: 245 CRVANELGEVVTSACLI-------------VDVVKGKD---------------------- 269
           C   N  G   +S  L              V+ +KG D                      
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 231
Query: 270 -LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
            L S  +  I++    + + I ++   D G+YQ   SN  GS +C  S+ ++ 
Sbjct: 232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 97/222 (43%), Gaps = 25/222 (11%)
Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
            PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK    
Sbjct: 15  APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 62
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             R+   +  +  +  I E V   D G YT  VEN YGS+  T  L++++      RP +
Sbjct: 63  EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRPIL 120
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
             GL  N     G  V F C+V     P+   I W ++      K   D  P ++V    
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 224 NLVIAR---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            +  +    L + +V   D GE+ C+V+N +G+   SA L V
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 51/280 (18%)
Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           LG++  F+C VTG      +W+KD +   P     +   E+   L + +VT  DAG YT 
Sbjct: 19  LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 78
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT-FECQVQVVPPNDHD 197
              N  G    +A+L +  P      P+ +  LE  R    D  T +EC++   P  +  
Sbjct: 79  YASNVAGKDSCSAQLGVQAP------PRFIKKLEPSRIVKQDEHTRYECKIGGSP--EIK 130
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
           + W+++   I+  S  +    V+S     +A L++ ++  ED G++TC   N  G   +S
Sbjct: 131 VLWYKDETEIQESSKFRMSF-VES-----VAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 258 ACLI-------------VDVVKGKD-----------------------LTSDGRLNIITV 281
             L              V+ +KG D                       L S  +  I++ 
Sbjct: 185 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE 244
Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
              + + I ++   D G+YQ   SN  GS +C  S+ ++ 
Sbjct: 245 NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTI 138
            +TVRF+C   G P P  SW K+G+      R+  I+ +     L +  V   D G YT 
Sbjct: 30  ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTFECQVQV-VPPNDH 196
            VEN +GS+  T  L++++      RP +  GL  N     G  V F C+V     P+  
Sbjct: 90  VVENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH-- 145
Query: 197 DISWFRNNRL--IKLDSDMKPEVQV------DSKENLVIARLKIPHVYPEDEGEFTCRVA 248
            I W ++  +   K+  D  P V V      +S E  V  RL++ +V   D GE+ CR  
Sbjct: 146 -IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADV--RLRLANVSERDGGEYLCRAT 202
Query: 249 NELG 252
           N +G
Sbjct: 203 NFIG 206

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 17/202 (8%)
Query: 67  RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK---DGKPATPNARVTIREKEDLRFL 123
           RF +   +    +GDTV  +C V G P P   W K   D  P   ++RV +        L
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---L 179
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEAT-ARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
           +IS +   D+G+Y     N   +     A + I+    +  +   L    N+   +G   
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
             EC V   PP     +W R   +I+L S    +  +    NL+I+     +V  +D G 
Sbjct: 240 VLECCVSGYPP--PSFTWLRGEEVIQLRSK---KYSLLGGSNLLIS-----NVTDDDSGT 289
Query: 243 FTCRVANELGEVVTSACLIVDV 264
           +TC V  +   +  SA L V V
Sbjct: 290 YTCVVTYKNENISASAELTVLV 311

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 72  PHNKICDLGDTVRFQ------CSVTGQPAPWTSWSKDGKPATPNA-RVTIRE-KEDLRFL 123
           PH K       VR+Q      C VTG P P   W + GK    +  +  I+E K     L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
            I+ VT +DA +Y ++  N  GSV  TA LE+  P A I  PK L G+  +    G+ V+
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEVVS 123
Query: 184 FECQVQVVPPNDHDISWFRNNRLI 207
            +      P  D  I+W +   LI
Sbjct: 124 IKIPFSGKP--DPVITWQKGQDLI 145

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 72  PHNKICDLGDTVRFQ------CSVTGQPAPWTSWSKDGKPATPNA-RVTIRE-KEDLRFL 123
           PH K       VR+Q      C VTG P P   W + GK    +  +  I+E K     L
Sbjct: 3   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
            I+ VT +DA +Y ++  N  GSV  TA LE+  P A I  PK L G+  +    G+ V+
Sbjct: 63  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEVVS 121
Query: 184 FECQVQVVPPNDHDISWFRNNRLI 207
            +      P  D  I+W +   LI
Sbjct: 122 IKIPFSGKP--DPVITWQKGQDLI 143

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 62  LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
           + + P +  V  +   D+G  +R+ C+  G+P P   W ++G+P     RV +    DLR
Sbjct: 290 VQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAG-DLR 348
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           F   S+++LED+G+Y    EN +G++ A+A L +
Sbjct: 349 F---SKLSLEDSGMYQCVAENKHGTIYASAELAV 379

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 80/215 (37%), Gaps = 30/215 (13%)
Query: 53  LNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGK--PATPN 109
           LN A    RL +       P      +G  V  +C   G P P   W K DG   P    
Sbjct: 194 LNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTT 253
Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN 169
           A  T         L+I  V+ ED G Y  + EN+ G      R+ +       ++P+ L 
Sbjct: 254 AEPT---------LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQ------AQPEWLK 298
Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR 229
            + +     G ++ + C     P     + W RN     L S  + EV      +L  ++
Sbjct: 299 VISDTEADIGSNLRWGCAAAGKP--RPTVRWLRNGE--PLASQNRVEVLAG---DLRFSK 351
Query: 230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
           L +     ED G + C   N+ G +  SA L V  
Sbjct: 352 LSL-----EDSGMYQCVAENKHGTIYASAELAVQA 381

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 83  VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142
            +F    TG+P P   W+KDGK  T   +  + E +   FLEI +    D+GLYT  V+N
Sbjct: 24  AKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN 83
Query: 143 NYGSVEATARLEI 155
           + GSV ++ +L I
Sbjct: 84  SAGSVSSSCKLTI 96

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 72  PHNKICDLGDTVRFQ------CSVTGQPAPWTSWSKDGKPATPNA-RVTIRE-KEDLRFL 123
           PH K       VR+Q      C VTG P P   W + GK    +  +  I+E K     L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
            I+ VT +DA +Y ++  N  GSV  TA LE+  P A I  PK L G+  +    G+ V+
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEVVS 123
Query: 184 FECQVQVVPPNDHDISWFRNNRLI 207
            +      P  D  I+W +   LI
Sbjct: 124 IKIPFSGKP--DPVITWQKGQDLI 145

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFL 123
           P+  A+P +   D G  +   C+ TG+P P  +WS  G+   +    R  I   +DL  L
Sbjct: 8   PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 67
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
            I +V  +D GLYT+ + N +GS  AT  + I
Sbjct: 68  IIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFL 123
           P+  A+P +   D G  +   C+ TG+P P  +WS  G+   +    R  I   +DL  L
Sbjct: 6   PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
            I +V  +D GLYT+ + N +GS  AT  + I
Sbjct: 66  IIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 77  CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
            D+G  +R+ C  +G+P P   W +DG+P     R+ +   E LRF   S++ LED+G+Y
Sbjct: 306 ADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE-LRF---SKLVLEDSGMY 361
Query: 137 TIKVENNYGSVEATARLEIM 156
               EN +G+V A+A L + 
Sbjct: 362 QCVAENKHGTVYASAELTVQ 381

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 13/193 (6%)
Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED--LR 121
           S P F  VP ++    G    F C  TG+P P  +W K GK  + + R  + E +D    
Sbjct: 6   SKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDDGAGS 64
Query: 122 FLEISEVTLE-DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD-G 179
            L I  + ++ D  +Y     N+ G +  +A+L +++   + S    ++    L+  + G
Sbjct: 65  VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKG 124
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
            + T  C     P  D +ISWF++   + +D    P       + L    L+I      D
Sbjct: 125 RTATMLCAAGGNP--DPEISWFKD--FLPVD----PAASNGRIKQLRSGALQIESSEESD 176
Query: 240 EGEFTCRVANELG 252
           +G++ C   N  G
Sbjct: 177 QGKYECVATNSAG 189

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 22/194 (11%)
Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
           P  +  D G    F C  TG P    SW KDGK         I   E +  L I  V  E
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRIESVKKE 399
Query: 132 DAGLYTIKVENNYGSVEATARLEI---MDPRAIISRPKVLNGLENLRCCDGDSVTFECQV 188
           D G+Y   V N+  S EA+A L++    DP      P +    +      G SV  +C  
Sbjct: 400 DKGMYQCFVRNDRESAEASAELKLGGRFDP------PVIRQAFQEETMEPGPSVFLKCVA 453
Query: 189 QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
              P    +ISW  + + I  ++D     Q  +    V++ L I  V+  D G + C   
Sbjct: 454 GGNP--TPEISWELDGKKIA-NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Query: 249 NELGEVVTSACLIV 262
           +++G    SA L V
Sbjct: 511 SKVGVAEHSAKLNV 524

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 25/193 (12%)
Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTL 130
           P     + G TV+ +C   G P P   W + DGKP    AR   R K +   LEI     
Sbjct: 211 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR---RHKSN-GILEIPNFQQ 266
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
           EDAG Y    EN+ G   A  +L         ++P  +  + ++     +SV +EC+   
Sbjct: 267 EDAGSYECVAENSRGKNVAKGQL------TFYAQPNWVQIINDIHVAMEESVFWECKANG 320
Query: 191 VPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
            P   +   W +N + L+  D      +Q++         L I  V   D G + C   N
Sbjct: 321 RPKPTY--RWLKNGDPLLTRD-----RIQIEQ------GTLNITIVNLSDAGMYQCVAEN 367
Query: 250 ELGEVVTSACLIV 262
           + G + +SA L V
Sbjct: 368 KHGVIFSSAELSV 380

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 25/193 (12%)
Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTL 130
           P     + G TV+ +C   G P P   W + DGKP    AR   R K +   LEI     
Sbjct: 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR---RHKSN-GILEIPNFQQ 267
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
           EDAG Y    EN+ G   A  +L         ++P  +  + ++     +SV +EC+   
Sbjct: 268 EDAGSYECVAENSRGKNVAKGQL------TFYAQPNWVQIINDIHVAMEESVFWECKANG 321
Query: 191 VPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
            P   +   W +N + L+  D      +Q++         L I  V   D G + C   N
Sbjct: 322 RPKPTY--RWLKNGDPLLTRD-----RIQIEQ------GTLNITIVNLSDAGMYQCVAEN 368
Query: 250 ELGEVVTSACLIV 262
           + G + +SA L V
Sbjct: 369 KHGVIFSSAELSV 381

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-----L 120
           PRF   P ++    G    F C  TG P P   W+K GK  + N R  + E +D     L
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSVL 65
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD----PRAI--ISRPKVLNGLENL 174
           R   +   T  D  +Y     NN G +  + RL ++     PR    I     L  +E  
Sbjct: 66  RIQPLR--TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
           R     + T  C     P  D +I+WF++   +   ++     Q+ S+    I  L+I  
Sbjct: 124 R-----TATMLCAASGNP--DPEITWFKDFLPVDTSNNNGRIKQLRSES---IGALQIEQ 173
Query: 235 VYPEDEGEFTCRVANELG 252
               D+G++ C   N  G
Sbjct: 174 SEESDQGKYECVATNSAG 191

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED--LR 121
           S P F  VP ++    G    F C  TG+P P  +W K GK  + + R  + E +D    
Sbjct: 5   SKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDDGAGS 63
Query: 122 FLEISEVTLE-DAGLYTIKVENNYGSVEATARLEIMDPRAI-ISRPKVLNGLENLRCCDG 179
            L I  + ++ D  +Y     N+ G +  +A+L +++   +    P +  G +       
Sbjct: 64  VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKA 123
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
            + T  C     P  D +ISWF++   + +D    P       + L    L+I      D
Sbjct: 124 RTATMLCAAGGNP--DPEISWFKD--FLPVD----PATSNGRIKQLRSGALQIESSEESD 175
Query: 240 EGEFTCRVANELG 252
           +G++ C   N  G
Sbjct: 176 QGKYECVATNSAG 188

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFL 123
           P F   P +     G   R  C V+G P P  SW  DGKP  P++  ++ +RE   +  L
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN-GVHSL 68
Query: 124 EISEVTLEDAGLYTIKVENNYG 145
            I  VT  DAG+YT    N  G
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAG 90

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           S R    P +     G++ RF C   G+P P  +W + G+  + +AR  +   +     E
Sbjct: 8   SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           IS V   D G Y++ VEN+ G  EA   L I
Sbjct: 68  ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
           + T + R    P +     G++ RF C   G+P P  +W + G+  + +AR  +   +  
Sbjct: 10  KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
              EIS V   D G Y++ VEN+ G  EA   L I
Sbjct: 70  STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 16/162 (9%)
Query: 109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR--PK 166
           NA +      D+  +E+   +L+D G Y    ++     +   R  ++    ++ R  P 
Sbjct: 613 NATMFSNSTNDILIMELKNASLQDQGDYVCLAQDR----KTKKRHCVVRQLTVLERVAPT 668
Query: 167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
           +   LEN     G+S+   C     PP    I WF++N  +  DS +   V  D   NL 
Sbjct: 669 ITGNLENQTTSIGESIEVSCTASGNPP--PQIMWFKDNETLVEDSGI---VLKDGNRNLT 723
Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
           I R++      EDEG +TC+  + LG     A  I++  + K
Sbjct: 724 IRRVR-----KEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 81  DTVRFQCSVTGQPAPWTSWSKDG-KPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           +   F C+V   P P  SW+++       + R +IRE   L  L I  V   D G+Y   
Sbjct: 23  EVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL--LTILSVEDSDDGIYCCT 80
Query: 140 VENNYG-SVEATARLEI-MDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
             N  G +VE+   L++ M P+  I+RP +     N++  +G      C     P     
Sbjct: 81  ANNGVGGAVESCGALQVKMKPK--ITRPPI-----NVKIIEGLKAVLPCTTMGNP--KPS 131
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252
           +SW      IK DS ++   ++   E+     L+I +V  ED G++ C   N LG
Sbjct: 132 VSW------IKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLG 177

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL-RFLE 124
           PRF   P ++I   G    F C  TG P P  +W+K GK        TI   E     L 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GDSV 182
           I  + T  D  +Y    +N+ G +   A+L ++    + S    ++    L+  +   + 
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
           T  C     P  D +I+WF++   + +D    P       + L    L+I      D+G+
Sbjct: 127 TMLCAASGNP--DPEITWFKD--FLPVD----PSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 243 FTCRVANELG 252
           + C   N  G
Sbjct: 179 YECVATNSAG 188

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 73  HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTI-REKEDLRFLEISEVTL 130
           H KI + G  V F C V G P P   W KDGK  +P +   TI R+ +    L  +  TL
Sbjct: 17  HYKIFE-GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 75
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
           +D G YTI   N  G +  T RL +   +A+ S P
Sbjct: 76  DDDGNYTIMAANPQGRISCTGRLMV---QAVNSGP 107

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL-RFLE 124
           PRF   P ++I   G    F C  TG P P  +W+K GK        TI   E     L 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GDSV 182
           I  + T  D  +Y    +N+ G +   A+L ++    + S    ++    L+  +   + 
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
           T  C     P  D +I+WF++   + +D    P       + L    L+I      D+G+
Sbjct: 127 TMLCAASGNP--DPEITWFKD--FLPVD----PSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 243 FTCRVANELG 252
           + C   N  G
Sbjct: 179 YECVATNSAG 188

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 14/181 (7%)
Query: 74  NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDA 133
           N   + G+ + F C  +G P P  SW ++GK    N +  ++       L +  +   D 
Sbjct: 13  NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDG 70
Query: 134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP- 192
           G Y  +  N  G  E  A L++     II        L+N    +   VT  C  +  P 
Sbjct: 71  GPYVCRATNKAGEDEKQAFLQVFVQPHIIQ-------LKNETTYENGQVTLVCDAEGEPI 123
Query: 193 PNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251
           P   +I+W R  +     + D   + +++ K     + L I  V   D G + C  A+ +
Sbjct: 124 P---EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 252 G 252
           G
Sbjct: 181 G 181

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 26/152 (17%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G+ +TF C+    P  +  ISWFRN +LI+ +     E  +    N     L + ++   
Sbjct: 19  GEEMTFSCRASGSP--EPAISWFRNGKLIEEN-----EKYILKGSN---TELTVRNIINS 68
Query: 239 DEGEFTCRVANELGEVVTSACLIV----DVVKGKDLTSDGRLNIITVGGTSVLTIEDIT- 293
           D G + CR  N+ GE    A L V     +++ K+ T+     +  V       I +IT 
Sbjct: 69  DGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITW 128
Query: 294 -----------GDDSGKYQVHVSNQHGSDSCY 314
                      GD S   ++ V  QHGS S +
Sbjct: 129 KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 160

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL-RFLE 124
           PRF   P ++I   G    F C  TG P P  +W+K GK        TI   E     L 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GDSV 182
           I  + T  D  +Y    +N+ G +   A+L ++    + S    ++    L+  +   + 
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
           T  C     P  D +I+WF++   + +D    P       + L    L+I      D+G+
Sbjct: 127 TMLCAASGNP--DPEITWFKD--FLPVD----PSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 243 FTCRVANELG 252
           + C   N  G
Sbjct: 179 YECVATNSAG 188

>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain Length = 100

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 50  PYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
           PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK     
Sbjct: 5   PYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 52
Query: 110 ARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIM 156
            R+   +  +  +  I E V   D G YT  VEN YGS+  T  L+++
Sbjct: 53  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 21/211 (9%)
Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----RVTIREKED 119
            SPR    P + +    +     C V G+P P   W KDG+P + N     RV  ++   
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 120 LRFLEISEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
             +  +     +D G Y    +N  G +V   A L+I      + R       ++ R   
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA-----VLRDDFRVEPKDTRVAK 122
Query: 179 GDSVTFECQVQVVPPN---DHDISWFRNNRLIKLDSDMKPEVQVDSKENLV-IARLKIPH 234
           G++   EC     PP    +  + W ++   + LD          S+  +V    L I +
Sbjct: 123 GETALLECG----PPKGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISN 176
Query: 235 VYPEDEGEFTCRVANELGEVVTS-ACLIVDV 264
           V P DEG + C   N +G   +S A LIV V
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 21/211 (9%)
Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----RVTIREKED 119
            SPR    P + +    +     C V G+P P   W KDG+P + N     RV  ++   
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 120 LRFLEISEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
             +  +     +D G Y    +N  G +V   A L+I      + R       ++ R   
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA-----VLRDDFRVEPKDTRVAK 122
Query: 179 GDSVTFECQVQVVPPN---DHDISWFRNNRLIKLDSDMKPEVQVDSKENLV-IARLKIPH 234
           G++   EC     PP    +  + W ++   + LD          S+  +V    L I +
Sbjct: 123 GETALLECG----PPKGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISN 176
Query: 235 VYPEDEGEFTCRVANELGEVVTS-ACLIVDV 264
           V P DEG + C   N +G   +S A LIV V
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 73  HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTI-REKEDLRFLEISEVTL 130
           H KI + G  V F C V G P P   W KDGK  +P +   TI R+ +    L  +  TL
Sbjct: 16  HYKIFE-GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 74
Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
           +D G YTI   N  G V  T RL +
Sbjct: 75  DDDGNYTIMAANPQGRVSCTGRLMV 99

>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast Growth Factor Length = 104

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 50  PYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
           PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK     
Sbjct: 9   PYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 56
Query: 110 ARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIM 156
            R+   +  +  +  I E V   D G YT  VEN YGS+  T  L+++
Sbjct: 57  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 104

>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2 Length = 105

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 50  PYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
           PY  N+    +RL      +AVP        +TV+F+C   G P P   W K+GK     
Sbjct: 10  PYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 57
Query: 110 ARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIM 156
            R+   +  +  +  I E V   D G YT  VEN YGS+  T  L+++
Sbjct: 58  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 105

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 51  YSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA 110
           YS+  A   R   + PRF   P+      G +  F C V     P  +W KD +    + 
Sbjct: 363 YSIRDAFWDRS-EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV 421
Query: 111 RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           +   R   +   L I+ V  +D G YT++ +N+YG+ E    L +
Sbjct: 422 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 51  YSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA 110
           YS+  A   R   + PRF   P+      G +  F C V     P  +W KD +    + 
Sbjct: 469 YSIRDAFWDRS-EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV 527
Query: 111 RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           +   R   +   L I+ V  +D G YT++ +N+YG+ E    L +
Sbjct: 528 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLEISEVTLEDAGLYTI 138
           G  V     V G+P P  SW ++ +P  P+ R    E E  L  L I      DAG YT 
Sbjct: 20  GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTC 79
Query: 139 KVENNYGSVEATARLEI 155
           K  N YG+ +  ARLE+
Sbjct: 80  KAVNEYGARQCEARLEV 96

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 33/195 (16%)
Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL-------ED 132
           G+     C V+  PAP  SW    +  T     TI    D RF  ++   L        D
Sbjct: 17  GEDAEVVCRVSSSPAPAVSWLYHNEEVT-----TI---SDNRFAMLANNNLQILNINKSD 68
Query: 133 AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLE---NLRCCDGDSVTFECQVQ 189
            G+Y  +     G VEA   ++  D   I++ P  ++  +   N     G+ +TF C+  
Sbjct: 69  EGIYRCE-----GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
             P  +  ISWFRN +LI+ +     E  +    N     L + ++   D G + CR  N
Sbjct: 124 GSP--EPAISWFRNGKLIEEN-----EKYILKGSN---TELTVRNIINSDGGPYVCRATN 173
Query: 250 ELGEVVTSACLIVDV 264
           + GE    A L V V
Sbjct: 174 KAGEDEKQAFLQVFV 188

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 23/198 (11%)
Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
           S P F   P ++I   G    F C  TG P P  +W+K GK      +V  +  E + F 
Sbjct: 5   SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGK------KVNSQRFETIEFD 58
Query: 124 EISEVTL--------EDAGLYTIKVENNYGSVEATARLEIM-DPRAIISRPKVLNGLENL 174
           E +   L         D  +Y    +N +G V   A+L ++ + +     P +  G +  
Sbjct: 59  ESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK 118
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
                 + T  C     P  D +I+WF++   + +D    P       + L    L+I  
Sbjct: 119 VVERTRTATMLCAASGNP--DPEITWFKD--FLPVD----PSTSNGRIKQLRSGGLQIES 170
Query: 235 VYPEDEGEFTCRVANELG 252
               D+G++ C  +N  G
Sbjct: 171 SEETDQGKYECVASNSAG 188

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
           P  +  D G    F C  TG P    SW KDGK         I   E +  L I  V  E
Sbjct: 314 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRIESVKKE 363
Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
           D G+Y   V N+  S EA+A L++
Sbjct: 364 DKGMYQCFVRNDRESAEASAELKL 387

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
           P  +  D G    F C  TG P    SW KDGK         I   E +  L I  V  E
Sbjct: 320 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRIESVKKE 369
Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
           D G+Y   V N+  S EA+A L++
Sbjct: 370 DKGMYQCFVRNDRESAEASAELKL 393

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
           P  +  D G    F C  TG P    SW KDGK         I   E +  L I  V  E
Sbjct: 317 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRIESVKKE 366
Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
           D G+Y   V N+  S EA+A L++
Sbjct: 367 DKGMYQCFVRNDRESAEASAELKL 390

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 18/193 (9%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-PNARVTIREKE-DLRFL 123
           P     P N+   +G    F C+  G P P   W K+GK  +   +R T+ E+   +  L
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 124 EISEVTL-EDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GD 180
            I  V    D   Y    EN  G +V A A L I +     +   V+      R  + G 
Sbjct: 67  RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 181 SVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
           +V   C+    P PN   I W +N   + +          + + +L    L+I +   ED
Sbjct: 127 TVLMTCKAIGNPTPN---IYWIKNQTKVDMS---------NPRYSLKDGFLQIENSREED 174
Query: 240 EGEFTCRVANELG 252
           +G++ C   N +G
Sbjct: 175 QGKYECVAENSMG 187

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA-TPNARVTIREKEDLRFLE 124
           PRF  VP N   D G   R    V+G PAP  SW  +G+   + +    I  ++ L  L 
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
              V   DAG Y    +N  G    T +L+++
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 18/193 (9%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-PNARVTIREKE-DLRFL 123
           P     P N+   +G    F C+  G P P   W K+GK  +   +R T+ E+   +  L
Sbjct: 9   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 124 EISEVTL-EDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GD 180
            I  V    D   Y    EN  G +V A A L I +     +   V+      R  + G 
Sbjct: 69  RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 128
Query: 181 SVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
           +V   C+    P PN   I W +N   + +          + + +L    L+I +   ED
Sbjct: 129 TVLMTCKAIGNPTPN---IYWIKNQTKVDMS---------NPRYSLKDGFLQIENSREED 176
Query: 240 EGEFTCRVANELG 252
           +G++ C   N +G
Sbjct: 177 QGKYECVAENSMG 189

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           +P     + ++   +G +  F+C+V+  P  D ++ WF+++  +K       ++  D + 
Sbjct: 41  KPYFTKTILDMEVVEGSAARFDCKVEGYP--DPEVMWFKDDNPVKESRHF--QIDYDEEG 96
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
           N     L I  V  +D+ ++TC+  N LGE   +A L+V+ +
Sbjct: 97  N---CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYTI 138
           G   RF C V G P P   W KD  P   +    I   E+    L ISEV  +D   YT 
Sbjct: 56  GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 139 KVENNYGSVEATARL 153
           K  N+ G    TA L
Sbjct: 116 KAVNSLGEATCTAEL 130

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           +P     + ++   +G +  F+C+V+  P  D ++ WF+++  +K       ++  D + 
Sbjct: 41  KPYFTKTILDMDVVEGSAARFDCKVEGYP--DPEVMWFKDDNPVKESRHF--QIDYDEEG 96
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
           N     L I  V  +D+ ++TC+  N LGE   +A L+V+ +
Sbjct: 97  N---CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 70/199 (35%), Gaps = 29/199 (14%)
Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-----PNARVTIREKEDL 120
           PR    P + I   G+     C   G+P P   W K G+        P +   +     L
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 121 RFLEI--SEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCC 177
            FL I     +  D G+Y     N  G +V   A LE+      I R        ++   
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA-----ILRDDFRQNPSDVMVA 124
Query: 178 DGDSVTFECQVQVVPPNDHD---ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
            G+    ECQ    PP  H    ISW +         D  P    D +  +   +L I +
Sbjct: 125 VGEPAVMECQ----PPRGHPEPTISWKK---------DGSPLDDKDERITIRGGKLMITY 171
Query: 235 VYPEDEGEFTCRVANELGE 253
               D G++ C   N +GE
Sbjct: 172 TRKSDAGKYVCVGTNMVGE 190

>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding Domain Complexed With Its Murine Receptor Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 123 LEISEVTLEDAGLYTIKV-ENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
           L    +T++D G+YT+ + + NY   +AT R  +  P   +++P +   + N    + DS
Sbjct: 73  LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP---VTQPFL--QVTNTTVKELDS 127
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
           VT  C    +  N   I W  N++ ++L   M       S+ N +   L+I  +  ED G
Sbjct: 128 VTLTCLSNDIGAN---IQWLFNSQSLQLTERMTL-----SQNNSI---LRIDPIKREDAG 176
Query: 242 EFTCRVAN 249
           E+ C ++N
Sbjct: 177 EYQCEISN 184

>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRF- 122
           +P F   P +K    GD+V+ +C ++  P P   W ++ +    N  R+++ +    R  
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           L I +V  +DAG YT+   N  G      RL++
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107

>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P  +   ++ +  +GDSV  ECQ+  +PP    + W RNN +++ ++D     Q    +N
Sbjct: 16  PMFIYKPQSKKVLEGDSVKLECQISAIPP--PKLFWKRNNEMVQFNTDRISLYQ----DN 69
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
                L I  V  +D G +T    NE G  VT+    +DV
Sbjct: 70  TGRVTLLIKDVNKKDAGWYTVSAVNEAG--VTTCNTRLDV 107

>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus Receptor And Cell Adhesion Molecule In The Cea Family Length = 216

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 123 LEISEVTLEDAGLYTIKV-ENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
           L    +T++D G+YT+ + + NY   +AT R  +  P   +++P +   + N    + DS
Sbjct: 73  LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP---VTQPFL--QVTNTTVKELDS 127
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
           VT  C    +  N   I W  N++ ++L   M       S+ N +   L+I  +  ED G
Sbjct: 128 VTLTCLSNDIGAN---IQWLFNSQSLQLTERMTL-----SQNNSI---LRIDPIKREDAG 176
Query: 242 EFTCRVAN 249
           E+ C ++N
Sbjct: 177 EYQCEISN 184

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P +   LEN     G+S+   C     PP    I WF++N  +  DS +   V  D   N
Sbjct: 11  PTITGNLENQTTSIGESIEVSCTASGNPP--PQIMWFKDNETLVEDSGI---VLKDGNRN 65
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
           L I R++      EDEG +TC+  + LG     A  I++  + K
Sbjct: 66  LTIRRVR-----KEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 105/307 (34%), Gaps = 69/307 (22%)
Query: 56  AIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNA---- 110
           + R   L +SP   A  H K    G   +  C +    P P  +W K    A PNA    
Sbjct: 94  SFRKTYLIASP---AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD 150
Query: 111 ---RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-----VEATARLEIMDPRAII 162
              R+T     +L F  +++  + D   Y    +N         VE   +    D     
Sbjct: 151 FDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK 210
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP---PNDHDISWFRNNRLIKLDSDMKPEVQV 219
             P      +++    GD     C     P   PN     +F+N +    D +  PE ++
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPN-----YFKNGK----DVNGNPEDRI 261
Query: 220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGE--------VVTSAC-------LIVDV 264
                    RL      PEDEG +TC V N +G+         V SA         ++ V
Sbjct: 262 TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVV 321
Query: 265 VKGKDLT----------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQV 302
            +G+D+T                      S GR  +   G    L I+ +   D G Y  
Sbjct: 322 KQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG----LVIKGVKNGDKGYYGC 377
Query: 303 HVSNQHG 309
             +N+HG
Sbjct: 378 RATNEHG 384

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 107/294 (36%), Gaps = 77/294 (26%)
Query: 80  GDTVRFQCSVT-GQPAPWTSW-SKDGKPATPNARVTIREKEDLRFLEIS----------- 126
           G  +  QC+   G P+P   W S   +P T + RV+     DL F  +            
Sbjct: 131 GAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCN 190
Query: 127 -----EVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
                  T++    +T+KV    G  E T     M P+   S   VL G++ L       
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVAERTP--SFMYPQGTASSQMVLRGMDLL------- 241
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
              EC    VP    DI+W++    +  D            EN   A L+I +V  ED G
Sbjct: 242 --LECIASGVP--TPDIAWYKKGGDLPSDKA--------KFENFNKA-LRITNVSEEDSG 288
Query: 242 EFTCRVANELGEV-------VTSACLIVDVVKGKDLT--SDGRLNIITVGGTSVLTIE-- 290
           E+ C  +N++G +       V +A   +D  K   L    DGRL +    G    T++  
Sbjct: 289 EYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRL-VCRANGNPKPTVQWM 347
Query: 291 ---------------DITGD----------DSGKYQVHVSNQHGSDSCYASVAV 319
                          ++ GD              YQ + SN+HG     A V+V
Sbjct: 348 VNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 62  LTSSPRF---YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE 118
           L ++P+F   Y +       +G T+R      G+P P  +W    K    +  +TI   E
Sbjct: 97  LQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE 156
Query: 119 DLRFLEISEVTLE-DAGLYTIKVENNYGSVEATARLEIMD 157
               L +  V  +  AG Y +++ N +G+V+A   +EI D
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           +G+ VR      G P P   W K+G P   N   TI+    L  +E+SE    D G YT+
Sbjct: 214 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNH--TIKAGHVLTIMEVSE---RDTGNYTV 268
Query: 139 KVENNYGSVEAT--ARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
            + N     + +    L +  P   I    +++ +++ +   G + T  C V  +PP  H
Sbjct: 269 ILTNPISKEKQSHVVSLVVYVPPQ-IGEKSLISPVDSYQY--GTTQTLTCTVYAIPP-PH 324
Query: 197 DISWF 201
            I W+
Sbjct: 325 HIHWY 329

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           +P F +V  +     G     QCSV G P P  +W  +G+P    AR T   +  +  L 
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQP-IQYARSTC--EAGVAELH 67
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATA 151
           I +   ED G YT   EN  G V  +A
Sbjct: 68  IQDALPEDHGTYTCLAENALGQVSCSA 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-60
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-27
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-53
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-52
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-50
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-50
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-23
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-20
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-50
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-30
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-07
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-48
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-27
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-23
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-48
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-35
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-23
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-22
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-47
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-19
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-47
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-30
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-22
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-46
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-16
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-09
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-44
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-23
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-18
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-44
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-37
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-20
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-44
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-18
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-16
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-43
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-37
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-34
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-22
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-43
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-41
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-40
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-35
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-35
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-35
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-43
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-19
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-07
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-41
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-18
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	8e-07
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-41
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-22
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-40
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-37
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-40
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-22
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-20
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-06
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-39
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-22
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-38
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-33
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-29
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-38
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-21
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-20
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-38
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-19
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-14
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-38
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-38
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	9e-18
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-37
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-31
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-23
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-09
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-36
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-36
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-29
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-26
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-23
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	6e-36
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-19
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-35
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-15
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-35
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-18
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-35
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-34
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-33
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-32
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-29
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-28
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-20
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-18
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-34
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-34
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-16
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-33
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-30
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-25
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-33
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-32
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-29
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-33
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-32
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-22
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-33
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-32
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-27
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-20
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-32
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-17
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-31
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-30
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-14
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-30
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-19
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-30
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-15
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-14
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-29
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-28
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-29
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-29
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-18
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-11
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-29
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-10
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-29
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-20
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	7e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-25
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-28
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-27
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-15
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	8e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-28
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-13
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	5e-28
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	9e-20
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-09
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	7e-28
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-18
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-10
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-27
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-12
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-26
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-16
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-12
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-26
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	5e-20
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-26
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-18
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-26
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-19
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-25
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-19
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-09
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-25
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	5e-20
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-07
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-25
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	6e-21
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-25
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-25
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-22
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	5e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	9e-25
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-13
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-06
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-24
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-10
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-09
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-24
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-24
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-24
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-22
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-12
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-11
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	7e-24
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-20
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	9e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-23
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-16
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-13
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-23
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	6e-21
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-23
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-21
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-07
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-23
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-15
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-12
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-22
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-22
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-21
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	5e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-22
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-16
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-21
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-08
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-21
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-21
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-12
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-21
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-16
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-21
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-10
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-21
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-05
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	4e-21
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-15
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	7e-07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-21
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-12
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-21
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-16
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-20
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-20
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-07
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-20
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-05
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-20
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-11
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-20
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-17
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	7e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	6e-20
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-19
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-19
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-13
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-19
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	8e-15
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-07
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-19
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	8e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-19
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-15
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	6e-19
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-18
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-18
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-18
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-17
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-18
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-06
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-18
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-16
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-18
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-18
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-06
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-18
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-11
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-06
2ens_A	96	Advanced glycosylation END product-specific recept	5e-18
2ens_A	96	Advanced glycosylation END product-specific recept	9e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-18
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	7e-12
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-18
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-16
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-08
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-17
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-15
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-17
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-17
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	4e-15
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-05
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-17
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	8e-17
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-15
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-06
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	9e-17
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-13
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-16
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-16
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-13
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-07
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-16
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-04
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-16
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	9e-13
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-06
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-16
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-14
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	8e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	7e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-12
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-06
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-15
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-14
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-15
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-15
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-10
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-15
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-08
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-15
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-07
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-15
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-07
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-14
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	9e-11
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	4e-14
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-13
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-13
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-11
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-10
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	5e-14
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-13
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	5e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-11
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-13
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	7e-13
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-12
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-12
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	3e-12
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	2e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	4e-04
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-05
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	3e-11
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	6e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-05
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	7e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-10
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	5e-10
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-09
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-09
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	8e-06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-09
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	3e-09
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	3e-09
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	2e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	4e-09
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	4e-09
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	5e-09
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	5e-09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	6e-09
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	6e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	6e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	5e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-08
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-06
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	2e-08
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-08
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	6e-08
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-04
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	2e-07
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	2e-07
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	4e-07
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	6e-07
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	7e-07
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	8e-07
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	8e-07
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	1e-06
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	1e-06
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	2e-06
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	2e-06
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	2e-06
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	4e-05
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	5e-06
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	5e-06
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	8e-06
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	8e-06
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	3e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	4e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	8e-04
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	4e-05
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	2e-04
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	5e-05
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	6e-05
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	1e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	2e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	1e-04
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	1e-04
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	2e-04
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	2e-04
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	2e-04
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	2e-04
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	6e-04
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	8e-04

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  194 bits (494), Expect = 1e-60
 Identities = 64/293 (21%), Positives = 114/293 (38%), Gaps = 51/293 (17%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P F   P +    LG++  F+C VTG      +W+KD +   P     +   E+   L +
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
            +VT  DAG YT    N  G    +A+L + +P   I + +    ++       +   +E
Sbjct: 66  LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVK-----QDEHTRYE 120

Query: 186 CQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
           C++   P      + W+++   I+  S  +             A L++ ++  ED G++T
Sbjct: 121 CKIGGSPEI---KVLWYKDETEIQESSKFRMSFVESV------AVLEMYNLSVEDSGDYT 171

Query: 245 CRVANELGEVVTSACLIVDV------------------------VKG---------KD-- 269
           C   N  G   +S  L V                          ++G         KD  
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 231

Query: 270 -LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
            L S  +  I++    + + I ++   D G+YQ   SN  GS +C  S+ ++ 
Sbjct: 232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  107 bits (270), Expect = 1e-27
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 45/196 (22%)

Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
           ++ P       ++    G+S TF+C V    P    I+W ++NR I+   + K  +  ++
Sbjct: 3   MAPPFFDLKPVSVDLALGESGTFKCHVTGTAP--IKITWAKDNREIRPGGNYKMTLVENT 60

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV----------------- 264
                 A L +  V   D G++TC  +N  G+   SA L V                   
Sbjct: 61  ------ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQD 114

Query: 265 --------VKG------------KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHV 304
                   + G             ++    +  +  V   +VL + +++ +DSG Y    
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 174

Query: 305 SNQHGSDSCYASVAVE 320
            N  GS S   S+ V+
Sbjct: 175 HNAAGSASSSTSLKVK 190

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 94.0 bits (234), Expect = 2e-22
 Identities = 24/92 (26%), Positives = 33/92 (35%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
             P F   PH      G  V  +C + G P    SW KD +      +  I  +  L  +
Sbjct: 191 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 250

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
            I  V   D G Y  K  N+ GS      + +
Sbjct: 251 HILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  183 bits (467), Expect = 1e-53
 Identities = 57/305 (18%), Positives = 113/305 (37%), Gaps = 54/305 (17%)

Query: 55  SAIRTRRLT--SSPRFYAVPH-NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR 111
               + +L     PRF      ++I    +  R++C + G P     W KD      +++
Sbjct: 278 KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 337

Query: 112 VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL 171
             +   E +  LE+  +++ED+G YT +  N  GS  ++  L++ +P      P      
Sbjct: 338 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP------PVFRKKP 391

Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK 231
             +    G  V  EC++Q  PP    +SW ++ R ++     K            +  + 
Sbjct: 392 HPVETLKGADVHLECELQGTPPF--QVSWHKDKRELRSGKKYKIM------SENFLTSIH 443

Query: 232 IPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT------- 271
           I +V   D GE+ C+ +N++G       + +               V G+++        
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEG 503

Query: 272 -----------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY 314
                                + I      + L        ++GKY   + N+ G+  C+
Sbjct: 504 AEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF 563

Query: 315 ASVAV 319
           A+++V
Sbjct: 564 ATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  180 bits (459), Expect = 2e-52
 Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 50/295 (16%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P F     +    +G+ +  QC V G P    +W K+           ++ K ++  L I
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
           ++V   D G YT K EN+ G+V ++A L I   +     P     L+++    G  V FE
Sbjct: 66  NKVDHSDVGEYTCKAENSVGAVASSAVLVI---KERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
           C++    P    +SW+++  L+K D++++     +       A L+I        G++ C
Sbjct: 123 CRINGSEP--LQVSWYKDGELLKDDANLQTSFIHNV------ATLQILQTDQSHVGQYNC 174

Query: 246 RVANELGEVVTSACLIVDVVK--------------------------------------- 266
             +N LG   +SA L +   +                                       
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD 234

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
            +++   G   +  V  T+ LT+  +T  D+G+Y  + SN  G DSC A + V+ 
Sbjct: 235 NREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  175 bits (446), Expect = 1e-50
 Identities = 61/297 (20%), Positives = 107/297 (36%), Gaps = 48/297 (16%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P F     +    LG  V F+C + G      SW KDG+    +A +      ++  L+I
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI 161

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
            +      G Y     N  G+  ++A+L + +       P       ++    G+S TF+
Sbjct: 162 LQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV---PPFFDLKPVSVDLALGESGTFK 218

Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
           C V    P    I+W ++NR I+   + K  +  ++        L +  V   D G++TC
Sbjct: 219 CHVTGTAP--IKITWAKDNREIRPGGNYKMTLVENTA------TLTVLKVTKGDAGQYTC 270

Query: 246 RVANELGEVVTSACLIVDV-------------------------------------VKGK 268
             +N  G+   SA L V                                           
Sbjct: 271 YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET 330

Query: 269 DLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
           ++    +  +  V   +VL + +++ +DSG Y     N  GS S   S+ V+   + 
Sbjct: 331 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 387

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  173 bits (440), Expect = 9e-50
 Identities = 63/291 (21%), Positives = 114/291 (39%), Gaps = 49/291 (16%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P F   P +    LG++  F+C VTG      +W+KD +   P     +   E+   L +
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
            +VT  DAG YT    N  G    +A+L + +P   I + +      +      +   +E
Sbjct: 258 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLE-----PSRIVKQDEHTRYE 312

Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
           C++   P     + W+++   I+  S  +             A L++ ++  ED G++TC
Sbjct: 313 CKIGGSPEI--KVLWYKDETEIQESSKFRMSFVESV------AVLEMYNLSVEDSGDYTC 364

Query: 246 RVANELGEVVTSACLIVDV------------------------VKG------------KD 269
              N  G   +S  L V                          ++G            ++
Sbjct: 365 EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE 424

Query: 270 LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
           L S  +  I++    + + I ++   D G+YQ   SN  GSD+C  S+ ++
Sbjct: 425 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  100 bits (250), Expect = 1e-23
 Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 47/199 (23%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P  +  LE++    G+ +T +C+V   P     I+W++ +  ++     K + + +    
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPE--IRIAWYKEHTKLRSAPAYKMQFKNNV--- 60

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
              A L I  V   D GE+TC+  N +G V +SA L++   K                  
Sbjct: 61  ---ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGF 117

Query: 267 ---------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
                                G+ L  D  L    +   + L I        G+Y    S
Sbjct: 118 PVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSAS 177

Query: 306 NQHGSDSCYASVAVEGRKI 324
           N  G+ S  A + +   ++
Sbjct: 178 NPLGTASSSAKLTLSEHEV 196

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 90.6 bits (225), Expect = 2e-20
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-ATPNARVTIREKEDLR 121
            + PRF     +    +G+ V+ Q ++ G      +W KD       +  + I   E++ 
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA 534

Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
            L+ S     +AG YT +++N  G+ E  A L +++
Sbjct: 535 TLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  165 bits (420), Expect = 1e-50
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 13/202 (6%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR--EKEDL 120
           T +P F     + +   G T  F+  ++G P P  SW +DG+  + +    ++    +  
Sbjct: 3   TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62

Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
             L I  VT  ++G Y++K  N  G   +TA L +    A    P  +  L+++    G 
Sbjct: 63  AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA---PPNFVQRLQSMTVRQGS 119

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
            V  + +V  +P     + ++R+   I+   D     Q+  + +L    L I   YPED 
Sbjct: 120 QVRLQVRVTGIPTP--VVKFYRDGAEIQSSLD----FQISQEGDL--YSLLIAEAYPEDS 171

Query: 241 GEFTCRVANELGEVVTSACLIV 262
           G ++    N +G   ++A L+V
Sbjct: 172 GTYSVNATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  112 bits (282), Expect = 3e-30
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 45/195 (23%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P     L+++   +G + TFE  +   P    ++SWFR+ ++I   +    ++       
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPV--PEVSWFRDGQVISTSTLPGVQISFSDG-- 61

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
              A+L IP V   + G ++ +  N  G+  ++A L+V                      
Sbjct: 62  --RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS 119

Query: 267 ---------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
                                G ++ S     I   G    L I +   +DSG Y V+ +
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179

Query: 306 NQHGSDSCYASVAVE 320
           N  G  +  A + V+
Sbjct: 180 NSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 267 GKDLTSDGR--LNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           G+ +++     + I    G + LTI  +T  +SG+Y +  +N  G  +  A + V+  
Sbjct: 43  GQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE 100

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  160 bits (406), Expect = 2e-48
 Identities = 53/201 (26%), Positives = 78/201 (38%), Gaps = 12/201 (5%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKED-LRF 122
           +P F     N            C VTG P P   W + GK    +  +  I+E +     
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
           L I+ VT +DA +Y ++  N  GSV  TA LE+  P A I  PK L G+  +    G+ V
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEVV 122

Query: 183 TFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
           + +      P P    I+W +   LI  +       QV    +     +    V  +D G
Sbjct: 123 SIKIPFSGKPDP---VITWQKGQDLIDNNGH----YQVIVTRSFTS-LVFPNGVERKDAG 174

Query: 242 EFTCRVANELGEVVTSACLIV 262
            +     N  G    +  L V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  104 bits (260), Expect = 6e-27
 Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 48/198 (24%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P     L NL      + T  C+V   P     + W+R  + I  D   K  +Q      
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPK--PIVKWYRQGKEIIADGL-KYRIQEFKGGY 61

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV-------------------- 264
               +L I  V  +D   +  R  N+ G V  +A L V+V                    
Sbjct: 62  ---HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118

Query: 265 ---------VKG---------KD---LTSDGRLNIITVG-GTSVLTIEDITGDDSGKYQV 302
                      G         K    + ++G   +I     TS++    +   D+G Y V
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178

Query: 303 HVSNQHGSDSCYASVAVE 320
              N+ G D     + V 
Sbjct: 179 CAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 94.4 bits (235), Expect = 2e-23
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
              P+            G+ V  +   +G+P P  +W K       N    +        
Sbjct: 102 IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS 161

Query: 123 LE-ISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
           L   + V  +DAG Y +  +N +G  + T  L++ D
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  163 bits (414), Expect = 2e-48
 Identities = 54/318 (16%), Positives = 110/318 (34%), Gaps = 72/318 (22%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
           + P F      ++      V  +C V   +      W KD +  + + +     K+ +  
Sbjct: 6   TGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICT 62

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP--KVLNGLENLRC-CDG 179
           L I+E + +DAG+Y + ++++ G  ++  +L     + ++     K+     +L+     
Sbjct: 63  LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122

Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
           + +     V      D  ++W  N   I+    +K  V  +         L+I    P D
Sbjct: 123 EGIQLYSFVTYYVE-DLKVNWSHNGSAIRYSDRVKTGVTGE------QIWLQINEPTPND 175

Query: 240 EGEFTCRVANELGEVVTSACLIVD----------------------------------VV 265
           +G++   + +       +  L                                     + 
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 235

Query: 266 KGKDLT-----------------------SDGRLNI-ITVGGTSVLTIEDITGDDSGKYQ 301
           +GK L                        SD   N+    G T+  TI  ++  DSGKY 
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295

Query: 302 VHVSNQHGSDSCYASVAV 319
           + V N++GS++   +V+V
Sbjct: 296 LVVKNKYGSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  130 bits (327), Expect = 2e-35
 Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 32/224 (14%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQ----------PAPWTSWSKDGKPATPNARVTIR 115
                    KI      ++ Q +  G                +WS +G     + RV   
Sbjct: 99  KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG 158

Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI--------------MDPRAI 161
              +  +L+I+E T  D G Y +++ +     + T  L                    A 
Sbjct: 159 VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE 218

Query: 162 ISRPKVLNGL-ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD 220
            +R +VL GL + +   +G ++   C V   PP   ++SW +N + +  D     + +  
Sbjct: 219 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKALASDDHCNLKFEAG 276

Query: 221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
                  A   I  V   D G++   V N+ G   +   + V +
Sbjct: 277 R-----TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 97.7 bits (243), Expect = 1e-23
 Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 55/190 (28%)

Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
              +V  +C+V  +   +  I W+++ R I +D     +  +          L I     
Sbjct: 20  GECNVLLKCKVANIKK-ETHIVWYKDEREISVDEKHDFKDGI--------CTLLITEFSK 70

Query: 238 EDEGEFTCRVANELGEVVTSACLIVDVVK------------------------------- 266
           +D G +   + ++ G+  +   L+ +  K                               
Sbjct: 71  KDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSF 130

Query: 267 ---------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSD 311
                          G  +    R+     G    L I + T +D GKY + + +     
Sbjct: 131 VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH 190

Query: 312 SCYASVAVEG 321
                ++ + 
Sbjct: 191 QKTVDLSGQA 200

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 93.8 bits (233), Expect = 4e-22
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LE 124
                +P       G  +   C+V G P P  SW K+ K    +    ++ +        
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFT 282

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
           I+ V+  D+G Y + V+N YGS  +   + +  P
Sbjct: 283 INGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 15/95 (15%)

Query: 233 PHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLT 288
             V  E      C+VAN   +  T        +      ++++ D + +     G   L 
Sbjct: 16  WEVTGECNVLLKCKVAN--IKKETH-------IVWYKDEREISVDEKHDF--KDGICTLL 64

Query: 289 IEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
           I + +  D+G Y+V + +  G D     +  E  K
Sbjct: 65  ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFK 99

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  160 bits (407), Expect = 2e-47
 Identities = 54/301 (17%), Positives = 97/301 (32%), Gaps = 58/301 (19%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
            +  +           +G++  F C+  G+P     ++  G+      RV ++++     
Sbjct: 2   MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61

Query: 123 LEISEVTLEDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
           L I    +EDAG+Y  +  +  G   EAT  LEI                       G+ 
Sbjct: 62  LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVV------SPQEFKQGED 115

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
               C+V   P     +SW  +N  +   SD +  +  ++        L+I ++   DEG
Sbjct: 116 AEVVCRVSSSPA--PAVSWLYHNEEVTTISDNRFAMLANN-------NLQILNINKSDEG 166

Query: 242 EFTCRVANELGEVVTSACLIVDVVK----------------------------------- 266
            + C    E    +    +IV V                                     
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI 226

Query: 267 -----GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
                GK +  + +  +        LT+ +I   D G Y    +N+ G D   A + V  
Sbjct: 227 SWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284

Query: 322 R 322
           +
Sbjct: 285 Q 285

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 86.0 bits (213), Expect = 2e-19
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 52  SLNSAIRTRRLTSSPRFYAV--PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
            ++       +   P         N   + G+ + F C  +G P P  SW ++GK    N
Sbjct: 179 EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN 238

Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
            +  ++       L +  +   D G Y  +  N  G  E  A L++   
Sbjct: 239 EKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  156 bits (395), Expect = 7e-47
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 12/200 (6%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
            +P       +    LG+  +  C + G+P P   W + GK    + +  +        L
Sbjct: 6   EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
            +     ED G+YT    N  G VE +++L +           +    E      G ++ 
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPL---KEKYYGAVGSTLR 122

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV-YPEDEGE 242
                   P     ++WF   +L++   +    + +++ E+     L + +V      G+
Sbjct: 123 LHVMYIGRPVP--AMTWFHGQKLLQNSEN----ITIENTEHY--THLVMKNVQRKTHAGK 174

Query: 243 FTCRVANELGEVVTSACLIV 262
           +  +++N  G V     + +
Sbjct: 175 YKVQLSNVFGTVDAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  111 bits (279), Expect = 9e-30
 Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 50/201 (24%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
             P +   ++++    G++    CQ+   P P   DI W+R  + +      K       
Sbjct: 6   EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLP---DIKWYRFGKELIQSRKYKMSSDGR- 61

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD----------------VV 265
                   L +     EDEG +TC   NE+GEV TS+ L++                   
Sbjct: 62  -----THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGA 116

Query: 266 KGKD-----------------------LTSDGRLNIITVGGTSVLTIEDIT-GDDSGKYQ 301
            G                         L +   + I      + L ++++     +GKY+
Sbjct: 117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176

Query: 302 VHVSNQHGSDSCYASVAVEGR 322
           V +SN  G+      V ++ +
Sbjct: 177 VQLSNVFGTVDAILDVEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 90.5 bits (225), Expect = 6e-22
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 64  SSPRFYA---VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
           ++P+F+    +       +G T+R      G+P P  +W    K    +  +TI   E  
Sbjct: 99  ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHY 158

Query: 121 RFLEISEVTLE-DAGLYTIKVENNYGSVEATARLEIMD 157
             L +  V  +  AG Y +++ N +G+V+A   +EI D
Sbjct: 159 THLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  157 bits (397), Expect = 8e-46
 Identities = 49/315 (15%), Positives = 100/315 (31%), Gaps = 65/315 (20%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P    V  N   D   ++ F+C     P    SWSKD      + R+ +  K +   +  
Sbjct: 4   PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTF 62

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR------PKVLNGLENLRCCDG 179
            ++ ++D G+Y+  V +  G   +    E    R +            +     +   + 
Sbjct: 63  KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEK 122

Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
             V F  Q + +   +  +++  N + I          ++    N  I  + +  +  ED
Sbjct: 123 GQVRFWMQAEKLSG-NAKVNYIFNEKEIFEGPK----YKMHIDRNTGIIEMFMEKLQDED 177

Query: 240 EGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGR---------------LNIITVGGT 284
           EG +T ++ +      ++  L+ DV K     ++ +               L+    G  
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 237

Query: 285 SV--------------------------------------LTIEDITGDDSGKYQVHVSN 306
           +V                                      L I + +  D+G Y+V + +
Sbjct: 238 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKD 297

Query: 307 QHGSDSCYASVAVEG 321
             G D     +  E 
Sbjct: 298 DRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 76.2 bits (187), Expect = 5e-16
 Identities = 21/210 (10%), Positives = 57/210 (27%), Gaps = 60/210 (28%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P     + N+      S+ FEC          + SW ++    +    ++  V+      
Sbjct: 4   PFTKEVVVNVDDDGVISLNFECDKMTPKS---EFSWSKDYVSTEDSPRLE--VESKGN-- 56

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
               ++    +  +D G ++C V +  G   +      ++ +                  
Sbjct: 57  --KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSE 114

Query: 267 -------------------------------GKDLTSDGRLNIITVGGTSV--LTIEDIT 293
                                           K++    +  +     T +  + +E + 
Sbjct: 115 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 174

Query: 294 GDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
            +D G Y   + +   ++     +  +  K
Sbjct: 175 DEDEGTYTFQLQDGKATNHSTVVLVGDVFK 204

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 231 KIPHVYPEDEGE---FTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVL 287
           ++     +D      F C       E   S                 RL + + G  + +
Sbjct: 8   EVVVNVDDDGVISLNFECDKMTPKSEFSWS-------KDYVSTEDSPRLEVESKGNKTKM 60

Query: 288 TIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
           T +D+  DD G Y   V++  G  S Y     E ++++
Sbjct: 61  TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLL 98

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  149 bits (378), Expect = 4e-44
 Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 11/202 (5%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE-DLRFLE 124
           PRF   P ++    G    F C  TG P P   W+K GK  +      I   +     L 
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66

Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAII-SRPKVLNGLENLRCCDGDSV 182
           I  + T  D  +Y     NN G +  + RL ++    I    P +  G +        + 
Sbjct: 67  IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126

Query: 183 TFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
           T  C     P P   +I+WF++   +   ++     Q+ S+       L+I      D+G
Sbjct: 127 TMLCAASGNPDP---EITWFKDFLPVDTSNNNGRIKQLRSESI---GALQIEQSEESDQG 180

Query: 242 EFTCRVANELGEVVTSAC-LIV 262
           ++ C   N  G   ++   L V
Sbjct: 181 KYECVATNSAGTRYSAPANLYV 202

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 94.5 bits (235), Expect = 3e-23
 Identities = 42/209 (20%), Positives = 65/209 (31%), Gaps = 55/209 (26%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
           + P+      +     G   +F CQ    P P    I W +  + +        E    S
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRP---KIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD------------------ 263
              L I  L+     P DE  + C  +N +GE+  S  L V                   
Sbjct: 62  GSVLRIQPLRT----PRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117

Query: 264 --VVKGKDLT--------------------------SDGRLNIITVGGTSVLTIEDITGD 295
             V + +  T                          ++GR+  +       L IE     
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177

Query: 296 DSGKYQVHVSNQHGSD-SCYASVAVEGRK 323
           D GKY+   +N  G+  S  A++ V G K
Sbjct: 178 DQGKYECVATNSAGTRYSAPANLYVRGTK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 80.6 bits (199), Expect = 3e-18
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 52  SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP---ATP 108
            L      +     P     P  K+ +   T    C+ +G P P  +W KD  P   +  
Sbjct: 95  RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNN 154

Query: 109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPR 159
           N R+     E +  L+I +    D G Y     N+ G+   A A L +   +
Sbjct: 155 NGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  152 bits (385), Expect = 5e-44
 Identities = 64/300 (21%), Positives = 102/300 (34%), Gaps = 57/300 (19%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
           PRF   P ++I   G    F C  TG P P  +W+K GK        TI   E     L 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66

Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS-RPKVLNGLENLRCCDGDSV 182
           I  + T  D  +Y    +N+ G +   A+L ++    + S  P +  G +        + 
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
           T  C     P    +I+WF++   +   +      Q+ S        L+I      D+G+
Sbjct: 127 TMLCAASGNPD--PEITWFKDFLPVDPSASNGRIKQLRS------GALQIESSEETDQGK 178

Query: 243 FTCRVANELGEVVTS-ACLIVDVVK----------------------------------- 266
           + C   N  G   +S A L V V                                     
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVK 238

Query: 267 ----GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
                +DLT +  + +    G +VL + D+   DS  Y     +  G     A + V+  
Sbjct: 239 WMQGAEDLTPEDDMPV----GRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSL 292

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  133 bits (336), Expect = 5e-37
 Identities = 41/212 (19%), Positives = 69/212 (32%), Gaps = 18/212 (8%)

Query: 52  SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR 111
            L      +  +  P     P  K+ +   T    C+ +G P P  +W KD  P  P+A 
Sbjct: 95  KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSAS 154

Query: 112 VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNG 170
               ++     L+I      D G Y     N+ G    + A L +   R     P+    
Sbjct: 155 NGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV---RVQNVAPRFSIL 211

Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
             +     G +V   C     P     + W +    +  + DM             + R 
Sbjct: 212 PMSHEIMPGGNVNITCVAVGSPM--PYVKWMQGAEDLTPEDDMP------------VGRN 257

Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            +     +D   +TC   + LG +   A + V
Sbjct: 258 VLELTDVKDSANYTCVAMSSLGVIEAVAQITV 289

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 91.0 bits (226), Expect = 3e-21
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
             YS  + +  R    +PRF  +P +     G  V   C   G P P+  W +  +  TP
Sbjct: 189 VRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP 248

Query: 109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
              + +          +    ++D+  YT    ++ G +EA A++ +       ++ 
Sbjct: 249 EDDMPVGR------NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 87.6 bits (217), Expect = 5e-20
 Identities = 34/204 (16%), Positives = 56/204 (27%), Gaps = 50/204 (24%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
             P+ +   ++     G   +F CQ    P     ++W +  + +        E    + 
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPK--PRVTWNKKGKKVNSQRFETIEFDESAG 62

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK---------------- 266
             L I  L+     P DE  + C   N +GE+   A L V                    
Sbjct: 63  AVLRIQPLRT----PRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118

Query: 267 ---------------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGK 299
                                         +        I    +  L IE     D GK
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGK 178

Query: 300 YQVHVSNQHGS-DSCYASVAVEGR 322
           Y+   +N  G   S  A++ V  +
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQ 202

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  152 bits (386), Expect = 2e-43
 Identities = 62/295 (21%), Positives = 100/295 (33%), Gaps = 56/295 (18%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP---ATPNARVTIREKEDLRF 122
            RF +   +    +GDTV  +C V G P P   W K+ +       ++RV +        
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS---GA 178

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
           L+IS +   D+G+Y     N   +     A + I+    +  +   L    N+   +G  
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
              EC V   PP     +W R   +I+L S    +  +    NL+     I +V  +D G
Sbjct: 239 AVLECCVSGYPP--PSFTWLRGEEVIQLRSK---KYSLLGGSNLL-----ISNVTDDDSG 288

Query: 242 EFTCRVANELGEVVTSACLIV-------------DVVKGKD------------------- 269
            +TC V  +   +  SA L V                +  D                   
Sbjct: 289 TYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK 348

Query: 270 ----LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
               +       I+       L I  +   D G YQ    N+ G+    A + V 
Sbjct: 349 NGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  137 bits (347), Expect = 1e-37
 Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 19/202 (9%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
            L     F   P N I   G     +C V+G P P  +W +  +     ++         
Sbjct: 217 GLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN 276

Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
             L IS VT +D+G YT  V     ++ A+A L ++ P      P  LN   NL   +  
Sbjct: 277 --LLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP------PWFLNHPSNLYAYESM 328

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
            + FEC V   P     ++W +N  ++          Q+    NL I       V   DE
Sbjct: 329 DIEFECAVSGKPV--PTVNWMKNGDVVIPSDYF----QIVGGSNLRIL-----GVVKSDE 377

Query: 241 GEFTCRVANELGEVVTSACLIV 262
           G + C   NE G   +SA LIV
Sbjct: 378 GFYQCVAENEAGNAQSSAQLIV 399

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  129 bits (325), Expect = 1e-34
 Identities = 64/318 (20%), Positives = 102/318 (32%), Gaps = 64/318 (20%)

Query: 52  SLNSAIRTRRLT--SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKP--A 106
            L S+          S  F + P + +   G  V   CS    +  P   W KDG     
Sbjct: 6   ELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILAL 65

Query: 107 TPNARVTIREKEDLRF--LEISEVTLEDAGLYTIKVENNYGS--VEATARLEIMDPRAII 162
             + R        L    +  S     D GLY  +         +  TA++ +  P   +
Sbjct: 66  GMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFL 125

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
           S+ + +          GD+V  +C+V   P     I W +N + +         V V   
Sbjct: 126 SQTESITAFM------GDTVLLKCEVIGDPMP--TIHWQKNQQDLNPIPG-DSRVVVLPS 176

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVD------------------ 263
             L I+RL+     P D G + C   N         A + +                   
Sbjct: 177 GALQISRLQ-----PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231

Query: 264 -VVKGKDLT---------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQ 301
             ++GKD                          R    ++ G S L I ++T DDSG Y 
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291

Query: 302 VHVSNQHGSDSCYASVAV 319
             V+ ++ + S  A + V
Sbjct: 292 CVVTYKNENISASAELTV 309

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 95.3 bits (237), Expect = 3e-22
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P F   P N        + F+C+V+G+P P  +W K+G    P+    I    +LR   I
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLR---I 369

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
             V   D G Y    EN  G+ +++A+L +  P
Sbjct: 370 LGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 79.1 bits (195), Expect = 1e-16
 Identities = 32/221 (14%), Positives = 57/221 (25%), Gaps = 48/221 (21%)

Query: 141 ENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISW 200
            +   S               +S P     +       G +V   C  +        I W
Sbjct: 4   GSELESSHHHHHHGGRRSLHFVSEPSDAVTMR------GGNVLLNCSAESDRGV-PVIKW 56

Query: 201 FRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL 260
            ++  ++ L  D +   Q     +L+I  +     +  DEG + C  +      + S   
Sbjct: 57  KKDGLILALGMDDR--KQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTA 114

Query: 261 IVDV--------------------------------------VKGKDLTSDGRLNIITVG 282
            V V                                         +DL      + + V 
Sbjct: 115 KVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL 174

Query: 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSD-SCYASVAVEGR 322
            +  L I  +   DSG Y+    N   +     A V +   
Sbjct: 175 PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSD 215

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  157 bits (397), Expect = 6e-43
 Identities = 64/300 (21%), Positives = 102/300 (34%), Gaps = 62/300 (20%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-----EDL 120
           P        +  + G +V  +C   G P P  SW  DGK    N R  + +      + +
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489

Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
            +L I+ V   D GLY    ++  G  E +A+L +     I         +E      G+
Sbjct: 490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ-------MEKKAIVAGE 542

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
           ++   C V   P     I W R+NR + ++       +V     L+I  ++       D+
Sbjct: 543 TLIVTCPVAGYPI--DSIVWERDNRALPINRK----QKVFPNGTLIIENVERNS----DQ 592

Query: 241 GEFTCRVANELGEVVT-SACLIVDV-------------------------VKGKD----- 269
             +TC   N+ G     S  + V V                         V G D     
Sbjct: 593 ATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNI 652

Query: 270 --------LTSDGRLNIITVG-GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
                   ++ D  +    VG   SVLTIE +    +G +  H  N  G       + V 
Sbjct: 653 DWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  152 bits (386), Expect = 2e-41
 Identities = 58/300 (19%), Positives = 88/300 (29%), Gaps = 70/300 (23%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI--REKEDLRFLEISEVT 129
              K      T+   C   G P P   W K  +  T    V +  R K+    L I +  
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314

Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
           +ED+G Y   V N+ G       L +  P +    P             G    F CQ  
Sbjct: 315 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF------GRPAVFTCQYT 368

Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
             P     +SW ++ + I                      L+I  V  ED+G + C V N
Sbjct: 369 GNPI--KTVSWMKDGKAIGHSES----------------VLRIESVKKEDKGMYQCFVRN 410

Query: 250 ELGEVVTSACLIVDVVK---------------------------------------GKDL 270
           +      SA L +                                           GK +
Sbjct: 411 DRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI 470

Query: 271 TSDGRLNI-----ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
            ++ R  +     +     S L I  +  +D G Y+    ++ G     A + V G   I
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI 530

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  148 bits (374), Expect = 7e-40
 Identities = 68/296 (22%), Positives = 99/296 (33%), Gaps = 56/296 (18%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
           T+       P  +  D G    F C  TG P    SW KDGK    +  V          
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV---------- 390

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
           L I  V  ED G+Y   V N+  S EA+A L++         P +    +      G SV
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGG---RFDPPVIRQAFQEETMEPGPSV 447

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
             +C     P    +ISW  + + I  +   +   Q  +    V++ L I  V+  D G 
Sbjct: 448 FLKCVAGGNPTP--EISWELDGKKIANNDRYQVG-QYVTVNGDVVSYLNITSVHANDGGL 504

Query: 243 FTCRVANELGEVVTSACLIV------------DVVKGKD--------------------- 269
           + C   +++G    SA L V             +V G+                      
Sbjct: 505 YKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN 564

Query: 270 --LTSDGRLNIITVGGTSVLTIEDIT-GDDSGKYQVHVSNQHG-SDSCYASVAVEG 321
             L  + +  +   G    L IE++    D   Y     NQ G S      V V  
Sbjct: 565 RALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  135 bits (340), Expect = 2e-35
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 16/214 (7%)

Query: 54  NSAIRTRRLT--SSPRFYAVPHNKIC-DLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPN 109
            SA  +  +     PR       +    +G  +   CSV G   P    W+ DG+  + +
Sbjct: 605 YSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISED 664

Query: 110 ARVTI-REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVL 168
             +T  R       L I  V    AG +T    N  G  + T  L +  P      P+ +
Sbjct: 665 LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP------PRWI 718

Query: 169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIA 228
               +     G     EC+    P     ++W +       +     +      E     
Sbjct: 719 LEPTDKAFAQGSDAKVECKADGFPK--PQVTWKKAVGDTPGEYKDLKKSDNIRVEE---G 773

Query: 229 RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            L + ++   +EG + C   N +G  +++  +I 
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  135 bits (340), Expect = 2e-35
 Identities = 55/305 (18%), Positives = 94/305 (30%), Gaps = 55/305 (18%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSV---TGQPAPWTSWSKDGKP-----ATPNARV 112
           R   +  + A  + +    G++   +C +           SW  D +      A  + + 
Sbjct: 134 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 193

Query: 113 TIREKEDLRFLEISEVTLEDA-GLYTIKVENNYGS---VEATARLEIMDPRAIISRPKVL 168
            +    +L    I EV  ED    Y  + ++       + AT    ++      + PKV+
Sbjct: 194 LVLPSGEL---HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVV 250

Query: 169 N--GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
           +    +        ++   C  Q  P       W++              V ++ +   V
Sbjct: 251 SLAKFDMKTYSGSSTMALLCPAQGYPV--PVFRWYKFIEGTTRKQA----VVLNDRVKQV 304

Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT-- 271
              L I     ED G++ C V N +G       L V              V  G+     
Sbjct: 305 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 364

Query: 272 --------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
                          DG+  I        L IE +  +D G YQ  V N   S    A +
Sbjct: 365 CQYTGNPIKTVSWMKDGKA-IGHSESV--LRIESVKKEDKGMYQCFVRNDRESAEASAEL 421

Query: 318 AVEGR 322
            + GR
Sbjct: 422 KLGGR 426

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  135 bits (340), Expect = 3e-35
 Identities = 52/292 (17%), Positives = 78/292 (26%), Gaps = 55/292 (18%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
              +      K    G+T+   C V G P     W +D +    N +  +     L    
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLI--- 582

Query: 125 ISEVTL-EDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
           I  V    D   YT   +N  G S   +  +++M    II         E      G  +
Sbjct: 583 IENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFA-----FEEGPAQVGQYL 637

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
           T  C V        +I W  + + I  D  +              + L I  V     G 
Sbjct: 638 TLHCSVPGGDL-PLNIDWTLDGQAISEDLGITTSRVGRR-----GSVLTIEAVEASHAGN 691

Query: 243 FTCRVANELGEVVTSACLIV-------------DVVKGKDLT------------------ 271
           FTC   N  G    +  L V                +G D                    
Sbjct: 692 FTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKA 751

Query: 272 --------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYA 315
                    D + +         L +++I   + G Y     N  GS     
Sbjct: 752 VGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAV 803

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  108 bits (272), Expect = 2e-26
 Identities = 52/326 (15%), Positives = 88/326 (26%), Gaps = 72/326 (22%)

Query: 55  SAIRTRRLTSSPRFYAVPHNKIC-DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT 113
           +A         P F   P N+I          +C  +G P P   W +    A  +    
Sbjct: 28  AANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-G 86

Query: 114 IREKEDLRFLEISEVTLED------AGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPK 166
           +R+      L       ED      A +Y     N +GS+ +    +  +  +   +   
Sbjct: 87  LRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVN 146

Query: 167 VLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMKPE-VQVDSKEN 224
             + +       G+S   +C +     +    +SW  +                V     
Sbjct: 147 KEHVIR------GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 200

Query: 225 LVIARLKIPHVYPED-EGEFTCRVANELGE---VVTSACLIVD----------------- 263
           L I       V PED    + CR  + L     +  +   +V                  
Sbjct: 201 LHIR-----EVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255

Query: 264 ----VVKGKDLT-------------------------SDGRLNIITVGGTSVLTIEDITG 294
                     +                              LN      +  L I+D   
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 315

Query: 295 DDSGKYQVHVSNQHGSDSCYASVAVE 320
           +DSGKY   V+N  G +S    + V 
Sbjct: 316 EDSGKYLCVVNNSVGGESVETVLTVT 341

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 83.4 bits (206), Expect = 7e-18
 Identities = 32/243 (13%), Positives = 65/243 (26%), Gaps = 55/243 (22%)

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA--IISRPKVLNGLENLRCCDGD 180
           + +    L+   L+        GS    A     D +    +  P        +   +  
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEP-----TNRIDFSNST 55

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE-D 239
               EC+    P    +I W R++       D+    Q+ S   LV    +      E  
Sbjct: 56  GAEIECKASGNPM--PEIIWIRSDG--TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 111

Query: 240 EGEFTCRVANELGEVVTSACLI--------------VDVVKGKDLT-------------- 271
              + C   N+ G +++    +                V++G                  
Sbjct: 112 AQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 171

Query: 272 -----SDGRLNI---------ITVGGTSVLTIEDIT-GDDSGKYQVHVSNQHGSDSCYAS 316
                +D   N            V  +  L I ++   D    YQ    ++   ++  ++
Sbjct: 172 VVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 231

Query: 317 VAV 319
              
Sbjct: 232 TKG 234

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  146 bits (370), Expect = 8e-43
 Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 15/220 (6%)

Query: 54  NSAIRTRRLTSSPRF----YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
           +          +P +                +TV+F+C   G P P   W K+GK     
Sbjct: 4   DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63

Query: 110 ARVTIREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVL 168
            R+   +  +  + L +  V   D G YT  VEN YGS+  T  L++++ R+        
Sbjct: 64  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE-RSRHRPILQA 122

Query: 169 NGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLI--KLDSDMKPEVQVDSKENL 225
               N     G  V F C+V     P    I W ++      K   D  P ++V     +
Sbjct: 123 GLPANASTVVGGDVEFVCKVYSDAQP---HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179

Query: 226 VIA---RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
             +    L + +V   D GE+ C+V+N +G+   SA L V
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 84.2 bits (208), Expect = 2e-19
 Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 11/112 (9%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-----------DGKPATPNARVTI 114
                +P N    +G  V F C V     P   W K           DG P     + + 
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178

Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
               +   L +  VT  DAG Y  KV N  G    +A L ++  +    R K
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           GK+   + R+    V      L +E +   D G Y   V N++GS +    + V  R
Sbjct: 57  GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  142 bits (360), Expect = 3e-41
 Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 14/211 (6%)

Query: 63  TSSPRF----YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE-K 117
           T +P +                +TVRF+C   G P P  SW K+G+      R+   + +
Sbjct: 9   TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 68

Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCC 177
                L +  V   D G YT  VEN +GS+  T  L++++ R+            N    
Sbjct: 69  HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-RSPHRPILQAGLPANQTAV 127

Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLI--KLDSDMKPEVQVD----SKENLVIARLK 231
            G  V F C+V         I W ++  +   K+  D  P V V     S+      RL+
Sbjct: 128 LGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185

Query: 232 IPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           + +V   D GE+ CR  N +G    +  L V
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLSV 216

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 81.1 bits (200), Expect = 4e-18
 Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 22/136 (16%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-----------DGKPATPNARVTI 114
                +P N+   LG  V F C V     P   W K           DG P     +  I
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174

Query: 115 REK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLEN 173
            E  E    L ++ V+  D G Y  +  N  G  E    L +  PRA     +++     
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA--EEELVEA--- 229

Query: 174 LRCCDGDSVTFECQVQ 189
                 ++ +      
Sbjct: 230 -----DEAGSVHHHHH 240

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           G++   + R+  I +      L +E +   D G Y   V N+ GS     ++ V  R
Sbjct: 53  GREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER 109

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  142 bits (359), Expect = 5e-40
 Identities = 66/255 (25%), Positives = 97/255 (38%), Gaps = 19/255 (7%)

Query: 17  RPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKI 76
           R +  +  H + R T   +             T     +   TR      +  AVP    
Sbjct: 81  RLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP---- 136

Query: 77  CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-IREKEDLRFLEISEVTLEDAGL 135
               +TVRF+C   G P P  SW K+G+      R+  I+ +     L +  V   D G 
Sbjct: 137 --AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 194

Query: 136 YTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-VVPPN 194
           YT  VEN +GS+  T  L++++ R+            N     G  V F C+V     P 
Sbjct: 195 YTCVVENKFGSIRQTYTLDVLE-RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP- 252

Query: 195 DHDISWFRNNRL--IKLDSDMKPEVQVDSKENLVIAR-----LKIPHVYPEDEGEFTCRV 247
              I W ++  +   K+  D  P V V               L + +V  ED GE+TC  
Sbjct: 253 --HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310

Query: 248 ANELGEVVTSACLIV 262
            N +G    SA L+V
Sbjct: 311 GNSIGFSHHSAWLVV 325

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  134 bits (339), Expect = 4e-37
 Identities = 59/328 (17%), Positives = 96/328 (29%), Gaps = 85/328 (25%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
                     +   GD V   C    G P   T W KDG    P+ RV +  +     L+
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQR----LQ 64

Query: 125 ISEVTLEDAGLYTIKVENNYGSV---------------EATARLEIMDPRAIISRPKVLN 169
           +   + ED+G Y+ +       +               +     E  D       P    
Sbjct: 65  VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124

Query: 170 ----GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL 225
                 + L     ++V F C     P     ISW +N R  + +  +        + +L
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPT--PSISWLKNGREFRGEHRIGGIKLRHQQWSL 182

Query: 226 VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV----------------------- 262
           V+  +      P D G +TC V N+ G +  +  L V                       
Sbjct: 183 VMESVV-----PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 237

Query: 263 ----------------------DVVKGKDLTSDGRLNI---------ITVGGTSVLTIED 291
                                   V G  +  DG   +          T     VL++ +
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHN 297

Query: 292 ITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           +T +D+G+Y     N  G     A + V
Sbjct: 298 VTFEDAGEYTCLAGNSIGFSHHSAWLVV 325

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 76.6 bits (188), Expect = 6e-16
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK----DGKPATPNARVTIR------ 115
                +P N+   LG  V F C V     P   W K    +G    P+    +       
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282

Query: 116 ---EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
                ++L  L +  VT EDAG YT    N+ G    +A L ++  
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 17/112 (15%)

Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
           P     + + L          GD+V   C      P      W ++   +     +    
Sbjct: 8   PGPEPGQQEQLVFGS------GDAVELSCPPPGGGPM-GPTVWVKDGTGLVPSERVL--- 57

Query: 218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
                  +   RL++ +   ED G ++CR       +   +  + D     D
Sbjct: 58  -------VGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGD 102

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  141 bits (356), Expect = 8e-40
 Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 10/201 (4%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRF 122
            +P F     N            C VTG P P   W + GK    +  +  I+E +    
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 123 -LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
            L I+ VT +DA +Y ++  N  GSV  TA LE+  P A I  PK L G+  +    G+ 
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEV 121

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
           V+ +      P     I+W +   LI  +   +  V          + +    V  +D G
Sbjct: 122 VSIKIPFSGKPDP--VITWQKGQDLIDNNGHYQVIVTRS-----FTSLVFPNGVERKDAG 174

Query: 242 EFTCRVANELGEVVTSACLIV 262
            +     N  G    +  L V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDV 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 95.2 bits (237), Expect = 1e-22
 Identities = 38/200 (19%), Positives = 60/200 (30%), Gaps = 48/200 (24%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P     L NL      + T  C+V   P     + W+R  + I  D   K  +Q      
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPI--VKWYRQGKEIIADGL-KYRIQEFKGGY 61

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
               +L I  V  +D   +  R  N+ G V  +A L V+V                    
Sbjct: 62  ---HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118

Query: 267 -----------------------GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQV 302
                                     + ++G   +I     TS++    +   D+G Y V
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178

Query: 303 HVSNQHGSDSCYASVAVEGR 322
              N+ G D     + V   
Sbjct: 179 CAKNRFGIDQKTVELDVADV 198

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 87.5 bits (217), Expect = 5e-20
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
           P+            G+ V  +   +G+P P  +W K       N    +         + 
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVF 164

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
            + V  +DAG Y +  +N +G  + T  L++ D 
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 267 GKDLTSDGRLNIITV--GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI 324
           GK++ +DG    I    GG   L I  +T DD+  YQV  +NQ GS S  AS+ VE    
Sbjct: 42  GKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK 101

Query: 325 I 325
           I
Sbjct: 102 I 102

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  137 bits (347), Expect = 2e-39
 Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 23/201 (11%)

Query: 80  GDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            + ++    VT        +WS +G     + RV      +  +L+I+E T  D G Y +
Sbjct: 17  AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76

Query: 139 KVENNYGSVEATARLEIMDPRAIISR---------------PKVLNGLENLRCCDGDSVT 183
           ++ +     + T  L         +                  +    + +   +G ++ 
Sbjct: 77  ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
             C V   PP   ++SW +N + +        + +         A   I  V   D G++
Sbjct: 137 LTCNVWGDPPP--EVSWLKNEKALAQTDHCNLKFEAGR-----TAYFTINGVSTADSGKY 189

Query: 244 TCRVANELGEVVTSACLIVDV 264
              V N+ G   +   + V +
Sbjct: 190 GLVVKNKYGSETSDFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 94.9 bits (236), Expect = 2e-23
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LE 124
                +P       G  +   C+V G P P  SW K+ K         ++ +        
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFT 177

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
           I+ V+  D+G Y + V+N YGS  +   + +  P
Sbjct: 178 INGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 91.1 bits (226), Expect = 5e-22
 Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 65/202 (32%)

Query: 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
              + +     V      D  ++W  N   I+    +K    V  +       L+I    
Sbjct: 15  STAEGIQLYSFVTYYVE-DLKVNWSHNGSAIRYSDRVK--TGVTGE----QIWLQINEPT 67

Query: 237 PEDEGEFTCRVANELGEVVTSACLIVD--------------------------------- 263
           P D+G++   + +       +  L                                    
Sbjct: 68  PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 127

Query: 264 -VVKGKDLT-----------------------SDGRLNIITV-GGTSVLTIEDITGDDSG 298
            + +GK L                             N+    G T+  TI  ++  DSG
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187

Query: 299 KYQVHVSNQHGSDSCYASVAVE 320
           KY + V N++GS++   +V+V 
Sbjct: 188 KYGLVVKNKYGSETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 10/56 (17%), Positives = 20/56 (35%)

Query: 266 KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
            G  +    R+     G    L I + T +D GKY + + +          ++ + 
Sbjct: 40  NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 95

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  139 bits (351), Expect = 3e-38
 Identities = 65/309 (21%), Positives = 99/309 (32%), Gaps = 60/309 (19%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNA-------RV 112
           R T      A  H K    G   +  C +    P P  +W K    A PNA       R+
Sbjct: 96  RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRI 155

Query: 113 TIREKEDLRFLEISEVTLEDAGLYTIKVENNYG-----SVEATARLEIMDPRAIISRPKV 167
           T     +L F  +++  + D   Y    +N         VE   +    D       P  
Sbjct: 156 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVP 215

Query: 168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI 227
               +++    GD     C     P      ++F+N + +  + + +      +      
Sbjct: 216 QYVSKDMMAKAGDVTMIYCMYGSNPM--GYPNYFKNGKDVNGNPEDRITRHNRTSGK--- 270

Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV--------------DVVKGKDLT- 271
            RL      PEDEG +TC V N +G+    S  L V               V +G+D+T 
Sbjct: 271 -RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTI 329

Query: 272 ---------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS 310
                                S GR  +      S L I+ +   D G Y    +N+HG 
Sbjct: 330 PCKVTGLPAPNVVWSHNAKPLSGGRATVT----DSGLVIKGVKNGDKGYYGCRATNEHGD 385

Query: 311 DSCYASVAV 319
                 V V
Sbjct: 386 KYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  125 bits (315), Expect = 4e-33
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFL 123
           P    V  + +   GD     C     P  + ++ K+GK     P  R+T   +   + L
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 272

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
                  ED G+YT +V+N  G  +  + +L ++       +P+     + +    G  V
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE-----KVIVVKQGQDV 327

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
           T  C+V  +P    ++ W  N + +   S  +  V            L I  V   D+G 
Sbjct: 328 TIPCKVTGLPA--PNVVWSHNAKPL---SGGRATVTDSG--------LVIKGVKNGDKGY 374

Query: 243 FTCRVANELGEVVTSACLIVD 263
           + CR  NE G+      + V+
Sbjct: 375 YGCRATNEHGDKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  115 bits (289), Expect = 2e-29
 Identities = 40/312 (12%), Positives = 67/312 (21%), Gaps = 65/312 (20%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRF 122
             P     P   +    +    +C + G       SW KDGK            ++D   
Sbjct: 5   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRKDEGS 63

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
           L        D G Y    E   G               A  ++      +E      G  
Sbjct: 64  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIE------GRP 117

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE---VQVDSKENLVIARLKIPHVYPE 238
              +C +    P    I+W +       ++D+      +      NL    +        
Sbjct: 118 FQLDCVLPNAYP-KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKED--VS 174

Query: 239 DEGEFTCRVANELGEVVTSACLI------------------------VDVVKGKDLT--- 271
           D  ++ C   N   +                                +    G       
Sbjct: 175 DIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYC 234

Query: 272 ----------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
                                  + R+          L  +    +D G Y   V N  G
Sbjct: 235 MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG 294

Query: 310 SD-SCYASVAVE 320
                   + V 
Sbjct: 295 KPQKHSLKLTVV 306

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  138 bits (349), Expect = 5e-38
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 19/198 (9%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-------PNARVTIREKEDLRFLE 124
             N+       V   C   G+P P  +W +     T        + R+ ++ +     L 
Sbjct: 7   LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 66

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
           I +V L D+G Y  +  +  G  + +  L+I         PK ++        +G+ +  
Sbjct: 67  IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA------PKFISNQTIYYSWEGNPINI 120

Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
            C V+  PP    I W R+  ++   +    +     ++ +    L+I      D G + 
Sbjct: 121 SCDVKSNPP--ASIHWRRDKLVLPAKNTTNLKTYSTGRKMI----LEIAPTSDNDFGRYN 174

Query: 245 CRVANELGEVVTSACLIV 262
           C   N +G       L +
Sbjct: 175 CTATNHIGTRFQEYILAL 192

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 92.2 bits (229), Expect = 3e-21
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 42/198 (21%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK-PEVQVDSK 222
           +P ++  L+N    +   VT  C  +  P    +I+W R           K  + +++ K
Sbjct: 1   QPHII-QLKNETTYENGQVTLVCDAEGEPI--PEITWKRAVDGFTFTEGDKSLDGRIEVK 57

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKD 269
                + L I  V   D G + C  A+ +G    S  L +                +G  
Sbjct: 58  GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNP 117

Query: 270 LT-------------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHV 304
           +                          +   L   + G   +L I   + +D G+Y    
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177

Query: 305 SNQHGSDSCYASVAVEGR 322
           +N  G+      +A+   
Sbjct: 178 TNHIGTRFQEYILALADV 195

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 88.7 bits (220), Expect = 6e-20
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN--ARVTIREKEDLRFL 123
           P+F +         G+ +   C V   P     W +D           +          L
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
           EI+  +  D G Y     N+ G+      L + D  +     K++            +  
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIE-------LSQTTAK 213

Query: 184 FECQVQVVPPNDHDISWFRNNRLI--------KLDSDMKPEVQVDSKENLVIARLKIPHV 235
               V    P+ H          I        ++ S++   V+    +      + + ++
Sbjct: 214 ----VSFNKPDSH------GGVPIHHYQVDVKEVASEIWKIVRSHGVQT----MVVLNNL 259

Query: 236 YPEDEGEFTCRVANELGE 253
            P    E      N  G+
Sbjct: 260 EPNTTYEIRVAAVNGKGQ 277

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  133 bits (336), Expect = 5e-38
 Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 17/205 (8%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFL 123
           P     P N+   +G    F C+  G P P   W K+GK    T +    + +   +  L
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66

Query: 124 EISEVTL-EDAGLYTIKVENNYG-SVEATARLEIMDPRAIISR-PKVLNGLENLRCCDGD 180
            I  V    D   Y    EN  G +V A A L I +     +  P +  G        G 
Sbjct: 67  RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
           +V   C+    P    +I W +N   + + +       +          L+I +   ED+
Sbjct: 127 TVLMTCKAIGNPTP--NIYWIKNQTKVDMSNPR---YSLKD------GFLQIENSREEDQ 175

Query: 241 GEFTCRVANELGEVVTSAC-LIVDV 264
           G++ C   N +G   + A  L V V
Sbjct: 176 GKYECVAENSMGTEHSKATNLYVKV 200

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 52  SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR 111
           +L      +     P     P  ++ ++G TV   C   G P P   W K+      +  
Sbjct: 97  TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNP 156

Query: 112 VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA-RLEIMDPRAIISRPK 166
               +   L+   I     ED G Y    EN+ G+  + A  L +   R       
Sbjct: 157 RYSLKDGFLQ---IENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHHH 209

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 53/208 (25%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
             P+++   +N     G   +F C  +  PP    I W +N + +           ++  
Sbjct: 5   HPPEIIRKPQNQGVRVGGVASFYCAARGDPP--PSIVWRKNGKKVSGTQS--RYTVLEQP 60

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVD------------------ 263
             + I R++ P     D+  + C   N +G+ V+  A L +                   
Sbjct: 61  GGISILRIE-PVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT 119

Query: 264 --VVKGKD-----------------------LTSDGRLNIITVGGTSVLTIEDITGDDSG 298
             +  G                         +        +  G    L IE+   +D G
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQG 176

Query: 299 KYQVHVSNQHGSDSCYAS-VAVEGRKII 325
           KY+    N  G++   A+ + V+ R++ 
Sbjct: 177 KYECVAENSMGTEHSKATNLYVKVRRVG 204

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  132 bits (334), Expect = 7e-38
 Identities = 49/204 (24%), Positives = 75/204 (36%), Gaps = 19/204 (9%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
           S   F  V   +    G+     C V+  PAP  SW    +  T  +        +   L
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNL 59

Query: 124 EISEVTLEDAGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
           +I  +   D G+Y  +               + +  P AI    K      N     G+ 
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK----SFNATAERGEE 115

Query: 182 VTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
           +TF C+    P P    ISWFRN +LI+ +      ++  + E      L + ++   D 
Sbjct: 116 MTFSCRASGSPEPA---ISWFRNGKLIEENEKYI--LKGSNTE------LTVRNIINSDG 164

Query: 241 GEFTCRVANELGEVVTSACLIVDV 264
           G + CR  N+ GE    A L V V
Sbjct: 165 GPYVCRATNKAGEDEKQAFLQVFV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 82.1 bits (203), Expect = 5e-19
 Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 53/198 (26%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
           S       +       G+     C+V   P P    +SW  +N  +   SD +  +  ++
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAP---AVSWLYHNEEVTTISDNRFAMLANN 57

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK--------------- 266
                   L+I ++   DEG + C    E    +    +IV V                 
Sbjct: 58  N-------LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA 110

Query: 267 -------------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQ 301
                                    GK +  + +   I  G  + LT+ +I   D G Y 
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK--YILKGSNTELTVRNIINSDGGPYV 168

Query: 302 VHVSNQHGSDSCYASVAV 319
              +N+ G D   A + V
Sbjct: 169 CRATNKAGEDEKQAFLQV 186

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  132 bits (334), Expect = 7e-38
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 24/208 (11%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-ATPNARVTIREKED 119
           +L  +P            + +   F C+V   P P  SW+++       + R +IRE   
Sbjct: 3   KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62

Query: 120 LRFLEISEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
           L  L I  V   D G+Y     N  G +VE+   L++         PK+     N++  +
Sbjct: 63  L--LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK------PKITRPPINVKIIE 114

Query: 179 GDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
           G      C     P P+   +SW + +  ++ +S     + V    +L I       V  
Sbjct: 115 GLKAVLPCTTMGNPKPS---VSWIKGDSALRENSR----IAVLESGSLRIHN-----VQK 162

Query: 238 EDEGEFTCRVANELGEVVTS-ACLIVDV 264
           ED G++ C   N LG   +    L V+V
Sbjct: 163 EDAGQYRCVAKNSLGTAYSKLVKLEVEV 190

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 82.9 bits (205), Expect = 4e-19
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 55  SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
            +    ++   P+    P N     G      C+  G P P  SW K       N+R+ +
Sbjct: 90  ESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAV 149

Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT-ARLEIM 156
            E   LR   I  V  EDAG Y    +N+ G+  +   +LE+ 
Sbjct: 150 LESGSLR---IHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 79.0 bits (195), Expect = 9e-18
 Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 52/197 (26%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
             P +   LE +     +  TF C V+  P P    ISW RN  LIKL  D +  ++ + 
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPE---ISWTRNKILIKL-FDTRYSIRENG 61

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS-ACLIVDV---------------- 264
                   L I  V   D+G + C   N +G  V S   L V +                
Sbjct: 62  ------QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEG 115

Query: 265 --------VKG---------KD---LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHV 304
                     G         K    L  + R+ ++  G    L I ++  +D+G+Y+   
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDAGQYRCVA 172

Query: 305 SNQHGSDSC-YASVAVE 320
            N  G+       + VE
Sbjct: 173 KNSLGTAYSKLVKLEVE 189

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  137 bits (347), Expect = 6e-37
 Identities = 44/305 (14%), Positives = 91/305 (29%), Gaps = 53/305 (17%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRF-- 122
           P       + +   G+     C++    +    +W ++        +       D  +  
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYER 271

Query: 123 ---LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDG 179
              L IS   + D+G++     N +GS   T  LE++D   I   P +      +   DG
Sbjct: 272 QATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMI---NTTVFVNDG 328

Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
           ++V    + +  P  +H   W   NR      +  P+   +      ++ L +  +   +
Sbjct: 329 ENVDLIVEYEAFPKPEH-QQWIYMNRTFTDKWEDYPK-SENESNIRYVSELHLTRLKGTE 386

Query: 240 EGEFTCRVANELGEVVTSACLIVDV------------------VKG-------------- 267
            G +T  V+N       +  + V+                     G              
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446

Query: 268 -----KDLTSDGRLNIITVGG-----TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
                  +       + + G          +I+      +G  +    N  G  S Y + 
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506

Query: 318 AVEGR 322
           A +G 
Sbjct: 507 AFKGN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  120 bits (303), Expect = 7e-31
 Identities = 48/301 (15%), Positives = 80/301 (26%), Gaps = 51/301 (16%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLE 124
            + + V  +      +    +C +T       S     GKP   + R     K  +    
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI-- 172

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
            S             V+   G    + +  +    A  + P V     +    +G+  T 
Sbjct: 173 KSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV 231

Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
            C ++ V  +    +W R N   KL  +               A L I      D G F 
Sbjct: 232 TCTIKDVSSS-VYSTWKRENSQTKL-QEKYNSWHHGDFNYERQATLTISSARVNDSGVFM 289

Query: 245 CRVANELGEVVTSACLIV----------------DVVKGKDLT----------------- 271
           C   N  G    +  L V                 V  G+++                  
Sbjct: 290 CYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI 349

Query: 272 ------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
                            N   +   S L +  + G + G Y   VSN   + +   +V V
Sbjct: 350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409

Query: 320 E 320
            
Sbjct: 410 N 410

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 97.8 bits (243), Expect = 7e-23
 Identities = 46/310 (14%), Positives = 85/310 (27%), Gaps = 79/310 (25%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
           S P  +    + I  +GD +R  C+  G       W+ +    T   +            
Sbjct: 35  SPPSIHPGKSDLIVRVGDEIRLLCTDPGFV----KWTFEILDETNENKQNE--------W 82

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
              +    + G YT   ++    +  +  + + DP  +    + L G E       +   
Sbjct: 83  ITEKAEATNTGKYTCTNKH---GLSNSIYVFVRDPAKLFLVDRSLYGKE------DNDTL 133

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
             C +             +  +   L  D++     D K  ++I  +K            
Sbjct: 134 VRCPLTDPEVT---NYSLKGCQGKPLPKDLR--FIPDPKAGIMIKSVKRA----YHRLCL 184

Query: 244 TCRVANELGEVVTSACLIVDVVK------------------------------------- 266
            C V  E G+ V S   I+ V                                       
Sbjct: 185 HCSVDQE-GKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243

Query: 267 ------GKDLTSDGRLNIITVGGT-----SVLTIEDITGDDSGKYQVHVSNQHGSDSCYA 315
                         + N    G       + LTI     +DSG +  + +N  GS +   
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303

Query: 316 SVAVEGRKII 325
           ++ V  +  I
Sbjct: 304 TLEVVDKGFI 313

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 57.4 bits (138), Expect = 2e-09
 Identities = 16/112 (14%), Positives = 19/112 (16%), Gaps = 18/112 (16%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-------DGKPATPNARVTIREKE 118
           P                   QC   G P P   W               P    T+    
Sbjct: 413 PEILTYDR------LVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466

Query: 119 DLR-----FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
                      I     +  G    K  N+ G   A               P
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 56.2 bits (135), Expect = 5e-09
 Identities = 21/226 (9%), Positives = 45/226 (19%), Gaps = 63/226 (27%)

Query: 131 EDAGLYT----IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFEC 186
             A  +     + +    GS + +       P +I      L          GD +   C
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRV------GDEIRLLC 58

Query: 187 QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
                      + W         ++                           + G++TC 
Sbjct: 59  TDP------GFVKWTFEILDETNENKQN--------------EWITEKAEATNTGKYTCT 98

Query: 247 VANELGEVV----------TSACLIVDVVKGKDLT-----------------SDGRL--- 276
             + L   +                +   +  D                     G+    
Sbjct: 99  NKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPK 158

Query: 277 -NIITVGGTSVLTIEDIT-GDDSGKYQVHVSNQHGS-DSCYASVAV 319
                    + + I+ +            V  +  S  S    + V
Sbjct: 159 DLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV 204

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  132 bits (333), Expect = 1e-36
 Identities = 56/304 (18%), Positives = 92/304 (30%), Gaps = 62/304 (20%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPA--TPNARVTI-REKEDLR 121
            +   VP      +G++  F C V G       SW             R+++    +D  
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 122 FLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
            L I    ++DAG+Y   V    G+  EAT  ++I       + P      E      G+
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE------GE 116

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
                C V    P    I W    R + L  D++    V S   L I  +K       DE
Sbjct: 117 DAVIVCDVVSSLP--PTIIWKHKGRDVILKKDVR--FIVLSNNYLQIRGIK-----KTDE 167

Query: 241 GEFTCRVANELGEVVTSACLIVDVV----------------------------------- 265
           G + C         +    + V V                                    
Sbjct: 168 GTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT 227

Query: 266 -----KGKDLTSDGRLNI--ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVA 318
                 G+ + ++   +   I    +S LTI ++  +D  +Y     N+ G       + 
Sbjct: 228 MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287

Query: 319 VEGR 322
           V  +
Sbjct: 288 VFAK 291

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  137 bits (346), Expect = 2e-36
 Identities = 60/305 (19%), Positives = 95/305 (31%), Gaps = 57/305 (18%)

Query: 42  PLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK 101
            LS     P  LN        T SP +           G  +   C     P    SW  
Sbjct: 364 ELSVDHSDPVILNVLYGPDDPTISPSYTYY------RPGVNLSLSCHAASNPPAQYSWLI 417

Query: 102 DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
           DG                   L IS +T +++GLYT +  N+      T    I     +
Sbjct: 418 DGNIQQHTQE-----------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL 466

Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
                  N  + +   D D+V F C+ +          W+ N + + +   ++      S
Sbjct: 467 PKPSISSNNSKPVE--DKDAVAFTCEPEAQNTT---YLWWVNGQSLPVSPRLQL-----S 516

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV--------------DVVK 266
             N     L + +V   D   + C + N +    +    L V                + 
Sbjct: 517 NGN---RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLS 573

Query: 267 GKDLT----SDG--------RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY 314
           G +L     S          R+N I    T VL I  IT +++G Y   VSN     +  
Sbjct: 574 GANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNS 633

Query: 315 ASVAV 319
              ++
Sbjct: 634 IVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  121 bits (304), Expect = 8e-31
 Identities = 45/286 (15%), Positives = 84/286 (29%), Gaps = 59/286 (20%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
                 P N     G+ +   C     P    SW  +G                   L I
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFI 252

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIM----DPRAIISRPKVLNGLENLRCCDGDS 181
             +T+ ++G YT +  N+   +  T    I      P+  I+        +       D+
Sbjct: 253 PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVED------EDA 306

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
           V   C+ ++         W+ NN+ + +   ++      +        L +  V   D G
Sbjct: 307 VALTCEPEIQNTT---YLWWVNNQSLPVSPRLQLSNDNRT--------LTLLSVTRNDVG 355

Query: 242 EFTCRVANELGEVVTSACLIV---------------DVVKGKDLT----SDG-------- 274
            + C + NEL    +   ++                    G +L+    +          
Sbjct: 356 PYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSW 415

Query: 275 RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
            ++      T  L I +IT  +SG Y    +N     S      + 
Sbjct: 416 LIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  118 bits (296), Expect = 1e-29
 Identities = 46/298 (15%), Positives = 84/298 (28%), Gaps = 69/298 (23%)

Query: 55  SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
           +              +  ++K  +  D V F C    Q A    W  + +    + R+ +
Sbjct: 101 TGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDAT-YLWWVNNQSLPVSPRLQL 159

Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLEN 173
                 R L +  VT  D   Y  + +N   +    +  L ++      +         N
Sbjct: 160 SNGN--RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTIS-----PLN 212

Query: 174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233
                G+++   C     PP     SWF N    +                     L IP
Sbjct: 213 TSYRSGENLNLSCHAASNPP--AQYSWFVNGTFQQSTQ-----------------ELFIP 253

Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVV---------------------------- 265
           ++   + G +TC+  N    +  +    + V                             
Sbjct: 254 NITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP 313

Query: 266 -----------KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
                        + L    RL +     T  LT+  +T +D G Y+  + N+   D 
Sbjct: 314 EIQNTTYLWWVNNQSLPVSPRLQLSNDNRT--LTLLSVTRNDVGPYECGIQNELSVDH 369

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  109 bits (273), Expect = 1e-26
 Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 28/200 (14%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
               +  ++K  +  D V F C    Q      W  +G+    + R+ +      R L +
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQL--SNGNRTLTL 524

Query: 126 SEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
             VT  DA  Y   ++N+  +  +    L+++                +     G ++  
Sbjct: 525 FNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS-----PPDSSYLSGANLNL 579

Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
            C     P      SW  N    +                     L I  + P + G + 
Sbjct: 580 SCHSASNPS--PQYSWRINGIPQQHTQ-----------------VLFIAKITPNNNGTYA 620

Query: 245 CRVANELGEVVTSACLIVDV 264
           C V+N       S    + V
Sbjct: 621 CFVSNLATGRNNSIVKSITV 640

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  100 bits (250), Expect = 1e-23
 Identities = 48/287 (16%), Positives = 78/287 (27%), Gaps = 63/287 (21%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKP---------ATPNARVTIREKEDLRF-------L 123
           G  V        Q     SW K  +               + T       R        L
Sbjct: 14  GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73

Query: 124 EISEVTLEDAGLYTIKVENNYG---SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
            I  +   D G YT+ V  +           R+    P+  IS        +       D
Sbjct: 74  LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVED------KD 127

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
           +V F C+ +          W+ NN+ + +   ++      S  N     L + +V   D 
Sbjct: 128 AVAFTCEPETQDA---TYLWWVNNQSLPVSPRLQ-----LSNGNRT---LTLFNVTRNDT 176

Query: 241 GEFTCRVANELGEVV-TSACLIV--------------DVVKGKDLT----SDG------- 274
             + C   N +      S  L V                  G++L     +         
Sbjct: 177 ASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYS 236

Query: 275 -RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
             +N      T  L I +IT ++SG Y     N     +      + 
Sbjct: 237 WFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  128 bits (323), Expect = 6e-36
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 36/209 (17%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
              +    P +K    G  V+  C  TG P     W K  K         I        L
Sbjct: 17  RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE--------IPNGNTSE-L 67

Query: 124 EISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAII---------SRPKVLNGLEN 173
             + V ++DAG Y  +V NN+       ++L++ D              S+ ++     +
Sbjct: 68  IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127

Query: 174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233
            +   G ++  +C     P       WF+N   +  ++                    +P
Sbjct: 128 QKLMPGSTLVLQCVAVGSPI--PHYQWFKNELPLTHETK---------------KLYMVP 170

Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIV 262
           +V  E +G + C V N+     +    I+
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVEII 199

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 83.8 bits (207), Expect = 3e-19
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
            S  +    P ++    G T+  QC   G P P   W K+  P T   +         + 
Sbjct: 116 ESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KL 166

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
             +  V LE  G Y   V N+  S ++     I+D    +  P
Sbjct: 167 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHP 209

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 33/207 (15%), Positives = 57/207 (27%), Gaps = 61/207 (29%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
              K+    E+     G  V   C+    P       WF+ N+ I   +           
Sbjct: 17  RGSKITVNPESKAVLAGQFVKLCCRATGHPF--VQYQWFKMNKEIPNGNT---------- 64

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS-ACLIV-----DVVKGKDLTSDGRL 276
                + L    V+ +D G + CRV N      +  + L V        +  D  S+ +L
Sbjct: 65  -----SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKL 119

Query: 277 NI-------------------------------------ITVGGTSVLTIEDITGDDSGK 299
            I                                     +T     +  +  +  +  G 
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGT 179

Query: 300 YQVHVSNQHGS-DSCYASVAVEGRKII 325
           Y  HV N   S DS    + ++    +
Sbjct: 180 YWCHVYNDRDSQDSKKVEIIIDELNNL 206

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  125 bits (316), Expect = 2e-35
 Identities = 38/204 (18%), Positives = 59/204 (28%), Gaps = 26/204 (12%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR-- 121
           +  +    P       G  V+  CSV G   P   W KDG       ++ I   E     
Sbjct: 1   AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 122 FLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
           FL +  V   DAG Y  +VE+   + +     L +         P      ++L      
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP------KDLAVPPNA 114

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
                C+    P     I W+R    I   +                    +        
Sbjct: 115 PFQLSCEAVGPPEPVT-IVWWRGTTKIGGPAPS---------------PSVLNVTGVTQS 158

Query: 241 GEFTCRVANELGEVVTSACLIVDV 264
             F+C   N  G + +S    V +
Sbjct: 159 TMFSCEAHNLKG-LASSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 71.4 bits (175), Expect = 4e-15
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 36/188 (19%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
           +  K++     L    G  V   C V+ +   D  I W ++  ++        ++ +   
Sbjct: 1   AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPD--IQWVKDGAVV----QNLDQLYIPVS 54

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDV-----VKGKDLT----S 272
           E   I  L +  V   D G + C+V +     ++    L V+      V+ KDL     +
Sbjct: 55  EQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNA 114

Query: 273 DGRL-------------------NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
             +L                     I     S   +       S  +     N  G  S 
Sbjct: 115 PFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASS 174

Query: 314 Y-ASVAVE 320
             A+V ++
Sbjct: 175 RTATVHLQ 182

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  124 bits (314), Expect = 6e-35
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 18/202 (8%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTS--WSKDGKPATPNARVTIREKEDLRFL 123
           PR        I D    V  QC++T          W+K+G   T   +            
Sbjct: 4   PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-----ASNMEY 58

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
            I++   ED+G Y   V +   + +A A +E+         P +     +    +G    
Sbjct: 59  RINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAA------PDITGHKRSENKNEGQDAM 111

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV-YPEDEGE 242
             C+    P    +  W +    +  +       +           L I ++   ED GE
Sbjct: 112 MYCKSVGYPHP--EWMWRKKENGV-FEEISNSSGRFFIINKENYTELNIVNLQITEDPGE 168

Query: 243 FTCRVANELGEVVTSACLIVDV 264
           + C   N +G    S  L V V
Sbjct: 169 YECNATNSIGSASVSTVLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 81.0 bits (200), Expect = 2e-18
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 54/199 (27%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
           + P+++   E +       VT +C +           W +N   +             ++
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT-----------ATR 50

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV------------------ 264
           +N      +I     ED GE+ C V + +     +A + V                    
Sbjct: 51  KNASNMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQD 109

Query: 265 ------VKGK-----------------DLTSDGRLNIITVGGTSVLTIEDITG-DDSGKY 300
                   G                     S GR  II     + L I ++   +D G+Y
Sbjct: 110 AMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEY 169

Query: 301 QVHVSNQHGSDSCYASVAV 319
           + + +N  GS S    + V
Sbjct: 170 ECNATNSIGSASVSTVLRV 188

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  124 bits (313), Expect = 8e-35
 Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 20/204 (9%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSK-DGKPATPN-ARVTIREKEDLR- 121
            +   VP      +G++  F C V G       SW   +G+  +PN  R+++   +D   
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 122 FLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
            L I    ++DAG+Y   V    G+  EAT  ++I        +    N        +G+
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI------FQKLMFKNAPTPQEFKEGE 116

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
                C V    P    I W    R + L  D++  V  ++        L+I  +   DE
Sbjct: 117 DAVIVCDVVSSLP--PTIIWKHKGRDVILKKDVRFIVLSNN-------YLQIRGIKKTDE 167

Query: 241 GEFTCRVANELGEVVTSACLIVDV 264
           G + C         +    + V V
Sbjct: 168 GTYRCEGRILARGEINFKDIQVIV 191

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 46/195 (23%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
            +V           G+S  F CQV     +  DISWF  N      +  +  V  +  ++
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKD-KDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV-------------DVVKGKD- 269
              + L I +   +D G + C V  E G     +  + +             +  +G+D 
Sbjct: 62  ---STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDA 118

Query: 270 ------------------------LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
                                   L  D R     V   + L I  I   D G Y+    
Sbjct: 119 VIVCDVVSSLPPTIIWKHKGRDVILKKDVR---FIVLSNNYLQIRGIKKTDEGTYRCEGR 175

Query: 306 NQHGSDSCYASVAVE 320
                +  +  + V 
Sbjct: 176 ILARGEINFKDIQVI 190

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  131 bits (331), Expect = 3e-34
 Identities = 43/331 (12%), Positives = 85/331 (25%), Gaps = 99/331 (29%)

Query: 80  GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNA---------------------------- 110
           G T    C+V   P P    W    +    N                             
Sbjct: 438 GTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKI 497

Query: 111 -----RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
                +  + E ++     +       + LY  +  N  G  E      +     I  +P
Sbjct: 498 EVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQP 557

Query: 166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI--------------KLDS 211
            +       +  + +SV+  C          +++W++                    LD+
Sbjct: 558 DM-------QPTEQESVSLWCTADRSTFE--NLTWYKLGPQPLPIHVGELPTPVCKNLDT 608

Query: 212 DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK----- 266
             K    + S     I  +++ +   +D+G++ C   +   +        + V++     
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668

Query: 267 -----------------------------------GKDLTSDGRLNIITVGGTSVLTIED 291
                                               + L  D    I+   G   LTI  
Sbjct: 669 ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG--IVLKDGNRNLTIRR 726

Query: 292 ITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           +  +D G Y     +  G     A   +EG 
Sbjct: 727 VRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  130 bits (327), Expect = 1e-33
 Identities = 42/279 (15%), Positives = 93/279 (33%), Gaps = 43/279 (15%)

Query: 80  GDTVRFQCSVTGQPAPWT--SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT 137
             TV   C  +      +  +   + +      R++   K   +   I    +  AG+  
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK---KGFTIPSYMISYAGMVF 199

Query: 138 IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
            + + N  S ++   + ++    I     VL+    +    G+ +   C  +       D
Sbjct: 200 CEAKINDESYQSIMYIVVVVGYRIY--DVVLSPSHGIELSVGEKLVLNCTARTELNVGID 257

Query: 198 ISWFRNNRLIKLDSDMKPEV--QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV 255
            +W   +   +    +  ++  Q  S+    ++ L I  V   D+G +TC  ++ L    
Sbjct: 258 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 317

Query: 256 TSACLIV----------------DVVKGKDLT----------------SDGRL--NIITV 281
            S  + V                +   G+ +                  +G    +  T+
Sbjct: 318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI 377

Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
               VLTI +++  D+G Y V ++N    +     V++ 
Sbjct: 378 KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  125 bits (315), Expect = 4e-32
 Identities = 47/222 (21%), Positives = 75/222 (33%), Gaps = 33/222 (14%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-------------- 108
           T  P     P  +     ++V   C+         +W K G    P              
Sbjct: 548 TRGPEITLQPDMQP-TEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL 606

Query: 109 ------NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAII 162
                 NA +      D+  +E+   +L+D G Y    ++           ++     + 
Sbjct: 607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV- 665

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
             P +   LEN     G+S+   C     PP    I WF++N  +  DS +   V  D  
Sbjct: 666 -APTITGNLENQTTSIGESIEVSCTASGNPP--PQIMWFKDNETLVEDSGI---VLKDGN 719

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
                  L I  V  EDEG +TC+  + LG     A  I++ 
Sbjct: 720 -----RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  124 bits (311), Expect = 1e-31
 Identities = 46/315 (14%), Positives = 78/315 (24%), Gaps = 67/315 (21%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
             PR              T++  C   GQ      W      +    RV + E  D  F 
Sbjct: 30  DLPRLSIQKDILTIKANTTLQITC--RGQRDL--DWLWPNNQSGSEQRVEVTECSDGLFC 85

Query: 123 --LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
             L I +V   D G Y         +      ++      I S     +G+  +      
Sbjct: 86  KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQ-HGVVYITENKNK 144

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
           +V   C   +   N    + +   R +   +     +  DSK+   I     P       
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGN----RISWDSKKGFTI-----PSYMISYA 195

Query: 241 GEFTCRVANELGEVVTSACLIV-----------------DVVKGKDLT------------ 271
           G   C          +   ++V                 ++  G+ L             
Sbjct: 196 GMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG 255

Query: 272 ---------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS 310
                                   +         S LTI+ +T  D G Y    S+   +
Sbjct: 256 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 315

Query: 311 DSCYASVAVEGRKII 325
                 V V  +  +
Sbjct: 316 KKNSTFVRVHEKPFV 330

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  116 bits (290), Expect = 6e-29
 Identities = 38/325 (11%), Positives = 83/325 (25%), Gaps = 91/325 (28%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           +G+ VR      G P P   W K+G P   N  +          L I EV+  D G YT+
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV-----LTIMEVSERDTGNYTV 398

Query: 139 KVENNYGSVEATARLEIMD-PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
            + N     + +  + ++      I    +++ +++ +   G + T  C V  +PP  H 
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQ--YGTTQTLTCTVYAIPPPHH- 455

Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSK---------------------------ENLVIARL 230
           I W+        +   +     +                             E       
Sbjct: 456 IHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVS 515

Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV------------DVVKGKDLT------- 271
            +          + C   N++G         V               + + ++       
Sbjct: 516 TLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADR 575

Query: 272 ------------------------------------SDGRLNIITVGGTSVLTIEDITGD 295
                                                +  +   +     ++ +++ +  
Sbjct: 576 STFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQ 635

Query: 296 DSGKYQVHVSNQHGSDSCYASVAVE 320
           D G Y     ++           + 
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVVRQLT 660

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  113 bits (284), Expect = 5e-28
 Identities = 31/195 (15%), Positives = 68/195 (34%), Gaps = 26/195 (13%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI----------REKEDLRFLEISEVT 129
           G+ +   C+   +      ++ +   +    +  +            K+ L  L I  VT
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298

Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
             D GLYT    +   + + +  + + +   +     + + +E      G+ V    +  
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT---VGERVRIPAKYL 355

Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
             PP   +I W++N   ++ +  +K               L I  V   D G +T  + N
Sbjct: 356 GYPP--PEIKWYKNGIPLESNHTIKAG-----------HVLTIMEVSERDTGNYTVILTN 402

Query: 250 ELGEVVTSACLIVDV 264
            + +   S  + + V
Sbjct: 403 PISKEKQSHVVSLVV 417

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 89.4 bits (221), Expect = 7e-20
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P       N+   +G+++   C+ +G P P   W KD +    ++ + +++    R L I
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTI 724

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
             V  ED GLYT +  +  G  +  A   I   +   +  +
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLER 765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 83.3 bits (205), Expect = 8e-18
 Identities = 31/236 (13%), Positives = 52/236 (22%), Gaps = 58/236 (24%)

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
           +    L    L+             +  L+          P++    + L      ++  
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLD---------LPRLSIQKDILTIKANTTLQI 51

Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
            C+ Q       D+ W   N     +  ++     D    L    L IP V   D G + 
Sbjct: 52  TCRGQ------RDLDWLWPNNQSGSEQRVEVTECSD---GLFCKTLTIPKVIGNDTGAYK 102

Query: 245 CRVANELGEVVTSACLIV------------------DVVKGKDLT-----SDGRLNI--- 278
           C         V    +                       K K +      S   LN+   
Sbjct: 103 CFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162

Query: 279 --------------ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
                         I+       TI       +G           S      + V 
Sbjct: 163 ARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  122 bits (308), Expect = 6e-34
 Identities = 26/213 (12%), Positives = 68/213 (31%), Gaps = 24/213 (11%)

Query: 66  PRFYAVPHNKICDLGDTVRFQ-CSVTGQPAPWTSWSKDGKPATPNARVTIREKED--LRF 122
             F              VRF   +         ++  + K      +  +    +  +  
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLE---------- 172
           + + ++  ED G YT ++++   +  +T  L     + +    +                
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 173 --NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
             +       +V  +C+V  +   +  I W+++ R I +D     +  +          L
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKK-ETHIVWYKDEREISVDEKHDFKDGI--------CTL 173

Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
            I     +D G +   + ++ G+  +   L+ +
Sbjct: 174 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 267 GKDLTSDGRLNIITVGGTSV--LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
            K++    +  +     T +  + +E +  +D G Y   + +   ++     +  +  K
Sbjct: 41  EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK 99

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  122 bits (307), Expect = 8e-34
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 14/212 (6%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP----NARVTIREKE 118
             S   ++          + V+  C+ +G  +P   W  D    T     N ++T   ++
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 119 DLRF----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENL 174
            + F    +    VT ED G YT  V    G+     +++++    ++  P         
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI----VLVPPSKPTVNIPS 117

Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK-ENLVIARLKIP 233
               G+     C  Q   P     +WF++  ++  +          S   N     L   
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSE-YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFD 176

Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
            +   D GE++C   N  G  +TS  + ++ V
Sbjct: 177 PLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 52/193 (26%)

Query: 179 GDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI--ARLKIPHV 235
            + V   C       P    + W  +            ++    ++ +      +    V
Sbjct: 19  NNPVKLSCAYSGFSSPR---VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV 75

Query: 236 YPEDEGEFTCRVANELGEVVTSACLIVDVV------------------------------ 265
             ED G +TC V+ E G       + + V+                              
Sbjct: 76  TREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGS 135

Query: 266 ---------KGKDLTSDGRLNI-------ITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
                     G  + ++ +          +    T  L  + ++  D+G+Y     N +G
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 195

Query: 310 SDSCYASVAVEGR 322
           +     +V +E  
Sbjct: 196 TPMTSNAVRMEAV 208

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  126 bits (318), Expect = 1e-33
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 23/223 (10%)

Query: 44  SSRTFTPYSLNSAIRTRRLTSSPRF---YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWS 100
           + +   P++L           +P F        +++   G  +  +C  +G P P  +W 
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY 257

Query: 101 KDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA 160
           K G    P+ +         + L I+ V+ ED+G Y     N  GS+  T  + +     
Sbjct: 258 KKGGDL-PSDKAKFENFN--KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA-- 312

Query: 161 IISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQV 219
               P  L+  +NL    G+     C+    P P    + W  N   ++           
Sbjct: 313 ----PYWLDEPKNLILAPGEDGRLVCRANGNPKPT---VQWMVNGEPLQSAPPNPNREVA 365

Query: 220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                     +            + C  +NE G ++ +A + V
Sbjct: 366 GD-------TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  118 bits (296), Expect = 2e-30
 Identities = 57/307 (18%), Positives = 100/307 (32%), Gaps = 64/307 (20%)

Query: 61  RLTSSPRFYAVPHNKIC-DLGDTVRFQCSVT-GQPAPWTSWSKDGKPATP-NARVTIREK 117
           +++ SP +     + +    G  +  QC+   G P+P   W          + RV+    
Sbjct: 111 QVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN 170

Query: 118 EDLRFLEISEVTLEDA-GLYTIKVENNYG---SVEATARLEIMDPRAIISRP----KVLN 169
            DL     S V L+D    Y+     ++      +    L+++  R +  R         
Sbjct: 171 GDLY---FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQG 227

Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR 229
              +     G  +  EC    VP    DI+W++    +  D          +K       
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPT--PDIAWYKKGGDLPSD---------KAKFENFNKA 276

Query: 230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT----- 271
           L+I +V  ED GE+ C  +N++G +  +  + V              +  G+D       
Sbjct: 277 LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA 336

Query: 272 -------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
                              +    N    G T  +   D        YQ + SN+HG   
Sbjct: 337 NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT--IIFRDTQISSRAVYQCNTSNEHGYLL 394

Query: 313 CYASVAV 319
             A V+V
Sbjct: 395 ANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  104 bits (261), Expect = 1e-25
 Identities = 52/317 (16%), Positives = 93/317 (29%), Gaps = 71/317 (22%)

Query: 59  TRRLTSSPRFYAVP-HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK 117
              LT  P        + I D  D +  +C   G PAP   W+++ +         +  +
Sbjct: 10  QNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMR 69

Query: 118 EDLRFLEISEVTL----EDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLE 172
                L I   +     E  G Y     N +G+      RL++               L+
Sbjct: 70  RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKEN-----LD 124

Query: 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKI 232
            +   +G  +T +C      P+   I W  ++            V      +L  +    
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPV-IFWMSSSMEPITQDKR---VSQGHNGDLYFS---- 176

Query: 233 PHVYPED-EGEFTCRVANELGEVV---TSACLIVD-----------------------VV 265
            +V  +D + +++C         +       L V                        V+
Sbjct: 177 -NVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVL 235

Query: 266 KGKDLT----------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVH 303
           +G DL                          +           L I +++ +DSG+Y   
Sbjct: 236 RGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA--LRITNVSEEDSGEYFCL 293

Query: 304 VSNQHGSDSCYASVAVE 320
            SN+ GS     SV V+
Sbjct: 294 ASNKMGSIRHTISVRVK 310

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 86.5 bits (214), Expect = 4e-19
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P +   P N I   G+  R  C   G P P   W  +G+P         RE      +  
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAG-DTIIF 371

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
            +  +    +Y     N +G + A A + ++D
Sbjct: 372 RDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 47/205 (22%)

Query: 146 SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR 205
            ++ + + E+  P  I  +       ++      D++  EC+ +  P       W RN+R
Sbjct: 4   PMDPSIQNELTQPPTITKQS-----AKDHIVDPRDNILIECEAKGNPA--PSFHWTRNSR 56

Query: 206 LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV-- 262
              +  D +  ++  S   LVI   +      E EGE+ C   N+ G  ++    L V  
Sbjct: 57  FFNIAKDPRVSMRRRS-GTLVI-DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114

Query: 263 ------------DVVKGKDLT-----------------SDGRLNI-----ITVGGTSVLT 288
                        V +G  LT                 S     I     ++ G    L 
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174

Query: 289 IEDIT-GDDSGKYQVHVSNQHGSDS 312
             ++   D    Y  +         
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFTHTI 199

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  126 bits (317), Expect = 2e-33
 Identities = 46/219 (21%), Positives = 68/219 (31%), Gaps = 24/219 (10%)

Query: 44  SSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG 103
            S       L+ A    R  +       P +     G  V  +C   G P P   W K  
Sbjct: 186 KSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD 245

Query: 104 KPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
              T               L I  V  ED G Y  + EN  G      R+ I        
Sbjct: 246 GSQTSKWLS------SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ----- 294

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
            P  L+ + +     G  + + C     P     + W R+ + +   +     ++V    
Sbjct: 295 -PDWLDVITDTEADIGSDLRWSCVASGKPR--PAVRWLRDGQPLASQNR----IEVSG-- 345

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                 L+   +  ED G + C   N+ G V  SA L V
Sbjct: 346 ----GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  123 bits (311), Expect = 1e-32
 Identities = 59/308 (19%), Positives = 91/308 (29%), Gaps = 68/308 (22%)

Query: 61  RLTSSPRFYAVPHNKI-CDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATP---NARVTIR 115
           R      F A   + +    G  V F CS     PA    W  +  P        R   +
Sbjct: 96  RFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ 155

Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT-----ARLEIMDPRAIISRPKVL-N 169
              +L    I++    D G Y+    ++   +  +     ++L +    A    P +   
Sbjct: 156 TTGNLY---IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212

Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR 229
              +     G  VT EC     P     I W +       D     +             
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPV--PQIKWRKL------DGSQTSKWLSSEP------L 258

Query: 230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-----------DVVK------------ 266
           L I +V  EDEG + C   N  G       +I+           D               
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVA 318

Query: 267 -------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
                        G+ L S  R+ +   GG   L    +  +DSG YQ    N+HG+   
Sbjct: 319 SGKPRPAVRWLRDGQPLASQNRIEV--SGGE--LRFSKLVLEDSGMYQCVAENKHGTVYA 374

Query: 314 YASVAVEG 321
            A + V+ 
Sbjct: 375 SAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  115 bits (289), Expect = 1e-29
 Identities = 47/304 (15%), Positives = 86/304 (28%), Gaps = 59/304 (19%)

Query: 63  TSSPRFYAVPHNKICDLG---DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED 119
           +  P F   P + +   G   + V   C     P     W  +G           R    
Sbjct: 2   SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61

Query: 120 LRFLEISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCD 178
              +  + V  +DAG Y     N  G+V +  A L     +   +  +     + ++  +
Sbjct: 62  -DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEER-----DPVKITE 115

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G  V F C      P      W  N     + +D +  V   +        L I      
Sbjct: 116 GWGVMFTCSPPPHYP-ALSYRWLLNEFPNFIPADGRRFVSQTT------GNLYIAKTEAS 168

Query: 239 DEGEFTCRVANELGEVVTSACLI-------------------------VDVVKGKDLT-- 271
           D G ++C   + +  +  S                                + G+ +T  
Sbjct: 169 DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLE 228

Query: 272 ---------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYAS 316
                           DG      +    +L I+++  +D G Y+    N  G D+    
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288

Query: 317 VAVE 320
           + + 
Sbjct: 289 IIIH 292

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 55.3 bits (133), Expect = 7e-09
 Identities = 32/187 (17%), Positives = 51/187 (27%), Gaps = 52/187 (27%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            + VT  C+ +  PP      W  N   +K+  D +  +       LVI       V  +
Sbjct: 22  EEKVTLTCRARANPP--ATYRWKMNGTELKMGPDSRYRLVAGD---LVI----SNPVKAK 72

Query: 239 DEGEFTCRVANELGEVVT-SACLIV--------------DVVKGKDLT------------ 271
           D G + C   N  G VV+  A L                 + +G  +             
Sbjct: 73  DAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPAL 132

Query: 272 --------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
                         +DGR  +    G   L I      D G Y    ++     +     
Sbjct: 133 SYRWLLNEFPNFIPADGRRFVSQTTGN--LYIAKTEASDLGNYSCFATSHIDFITKSVFS 190

Query: 318 AVEGRKI 324
                 +
Sbjct: 191 KFSQLSL 197

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  124 bits (313), Expect = 6e-33
 Identities = 43/221 (19%), Positives = 67/221 (30%), Gaps = 26/221 (11%)

Query: 44  SSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG 103
            +R                ++      V       +  T+   C   G PAP   W K  
Sbjct: 191 ETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFI 250

Query: 104 KPATPNARVTIREKEDL--RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
           +  T    V + ++       L I +  +ED+G Y   V N+ G       L +  P   
Sbjct: 251 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP--- 307

Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
                            G    F CQ    P     +SW ++ + I     +        
Sbjct: 308 ---LSAKIDPPTQTVDFGRPAVFTCQYTGNPI--KTVSWMKDGKAIGHSESV-------- 354

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                   L+I  V  ED+G + C V N+      SA L +
Sbjct: 355 --------LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  123 bits (311), Expect = 1e-32
 Identities = 53/301 (17%), Positives = 92/301 (30%), Gaps = 54/301 (17%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSV---TGQPAPWTSWSKDGKP-----ATPNARV 112
           R   +  + A  + +    G++   +C +           SW  D +      A  + + 
Sbjct: 99  RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 158

Query: 113 TIREKEDLRFLEISEVTLEDA-GLYTIKVENNYGS---VEATARLEIMDPRAIISRPKVL 168
            +    +   L I EV  ED    Y  + ++       + AT    ++      S P+  
Sbjct: 159 LVLPSGE---LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215

Query: 169 NGL-ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI 227
             + + L      +++  C  Q  P       W++              V ++ +   V 
Sbjct: 216 ALVQKPLELMVAHTISLLCPAQGFPA--PSFRWYKFIEGTTRKQA----VVLNDRVKQVS 269

Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT--- 271
             L I     ED G++ C V N +G       L V              V  G+      
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 329

Query: 272 -------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVA 318
                         DG+  I        L IE +  +D G YQ  V N   S    A + 
Sbjct: 330 QYTGNPIKTVSWMKDGKA-IGHSESV--LRIESVKKEDKGMYQCFVRNDRESAEASAELK 386

Query: 319 V 319
           +
Sbjct: 387 L 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 96.2 bits (239), Expect = 1e-22
 Identities = 53/315 (16%), Positives = 88/315 (27%), Gaps = 71/315 (22%)

Query: 65  SPRFYAVPHNKIC-DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
            P F   P N+I          +C  +G P P   W +    A  +    +R+      L
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKL 61

Query: 124 EISEVTLED------AGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRC 176
                  ED      A +Y     N +GS+      +  +  +   +     + +     
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR---- 117

Query: 177 CDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPE-VQVDSKENLVIARLKIPH 234
             G+S   +C +     +    +SW  +                V     L I       
Sbjct: 118 --GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR-----E 170

Query: 235 VYPED-EGEFTCRVANELG-EVVTSACLIV----------------------DVVKGKDL 270
           V PED    + CR  + L  E   SA                          +++    +
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI 230

Query: 271 T-------------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
           +                             LN      +  L I+D   +DSGKY   V+
Sbjct: 231 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 290

Query: 306 NQHGSDSCYASVAVE 320
           N  G +S    + V 
Sbjct: 291 NSVGGESVETVLTVT 305

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  124 bits (312), Expect = 8e-33
 Identities = 52/220 (23%), Positives = 75/220 (34%), Gaps = 24/220 (10%)

Query: 45  SRTFTPYSLNSAIRTRRLTSSPRF-YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-D 102
                P  L            P+     P     + G TV+ +C   G P P   W + D
Sbjct: 184 KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRAD 243

Query: 103 GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAII 162
           GKP    AR           LEI     EDAG Y    EN+ G   A  +L         
Sbjct: 244 GKPIARKARRHKSNGI----LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ---- 295

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
             P  +  + ++     +SV +EC+    P       W +N   +         +Q++  
Sbjct: 296 --PNWVQIINDIHVAMEESVFWECKANGRPK--PTYRWLKNGDPLLTR----DRIQIEQ- 346

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                  L I  V   D G + C   N+ G + +SA L V
Sbjct: 347 -----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  123 bits (311), Expect = 1e-32
 Identities = 58/303 (19%), Positives = 91/303 (30%), Gaps = 62/303 (20%)

Query: 61  RLTSSPRFYA-VPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATP-NARVTIREK 117
           +      F            G  +   C           +W  +  P+   N R   +E 
Sbjct: 97  QFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET 156

Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA----RLEIMDPRAIISRPKV-LNGLE 172
            +L    I++V   D G YT  V N   + +        +   D       PK+ +   E
Sbjct: 157 GNL---YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213

Query: 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKI 232
            +    G +V  EC     P     I W R +            +   ++ +     L+I
Sbjct: 214 TVPAEKGTTVKLECFALGNPV--PTILWRRAD---------GKPIARKARRHKSNGILEI 262

Query: 233 PHVYPEDEGEFTCRVANELGEVVTSACLIV-----------DVVK--------------- 266
           P+   ED G + C   N  G+ V    L             D+                 
Sbjct: 263 PNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGR 322

Query: 267 ----------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYAS 316
                     G  L +  R+ I    GT  L I  +   D+G YQ    N+HG     A 
Sbjct: 323 PKPTYRWLKNGDPLLTRDRIQI--EQGT--LNITIVNLSDAGMYQCVAENKHGVIFSSAE 378

Query: 317 VAV 319
           ++V
Sbjct: 379 LSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  109 bits (274), Expect = 2e-27
 Identities = 53/308 (17%), Positives = 90/308 (29%), Gaps = 69/308 (22%)

Query: 64  SSPRFYAVPHNKICDL---GDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKE 118
           S P F   P + +  L      V+  C V G P P   W  +G       + R ++ +  
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63

Query: 119 DLRFLEISEVT-LEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRC 176
               L I+     +DAG Y     N++G++ +  A+L+        +R +       +  
Sbjct: 64  ----LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTR-----STVSV 114

Query: 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
             G  +   C        +   +W  N      D+            NL IA+     V 
Sbjct: 115 RRGQGMVLLCGPPPHSG-ELSYAWIFNEYPSYQDNRR---FVSQETGNLYIAK-----VE 165

Query: 237 PEDEGEFTCRVANELGEVVTSACLI------------------------VDVVKGKDLT- 271
             D G +TC V N +                                  V   KG  +  
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225

Query: 272 ----------------SDGRL---NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
                           +DG+             +L I +   +D+G Y+    N  G + 
Sbjct: 226 ECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNV 285

Query: 313 CYASVAVE 320
               +   
Sbjct: 286 AKGQLTFY 293

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 88.7 bits (220), Expect = 5e-20
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
            + P +  + ++    + ++V ++C   G+P P   W K+G P     R+ I +      
Sbjct: 293 YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT---- 348

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
           L I+ V L DAG+Y    EN +G + ++A L ++
Sbjct: 349 LNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  119 bits (299), Expect = 9e-32
 Identities = 39/300 (13%), Positives = 74/300 (24%), Gaps = 69/300 (23%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           +P         + + G+TV  +C   G       W     P       T+  +     L 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGSV----EWDGPISP-----YWTLDPESPGSTLT 54

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
               T ++ G Y      +  +   T  L + DP    +        + +   +G     
Sbjct: 55  TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLA-----QEVTVVEGQEAVL 109

Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
            C +      D  +S  R      L   +            +I + K       D   + 
Sbjct: 110 PCLITDPALKDS-VSLMREGGRQVLRKTV---YFFSPWRGFIIRKAK-----VLDSNTYV 160

Query: 245 CRVANELGEVVTSACLIVDV------------------------------VKGKD----- 269
           C+     G   TS  + + V                                  +     
Sbjct: 161 CKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNV 219

Query: 270 ----------LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
                     +  +             L++  +   D+G Y    SN  G+ +   +  V
Sbjct: 220 ILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 80.0 bits (197), Expect = 2e-17
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 59  TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK---PATPNARVTIR 115
            R     P+    P   +   G+  +  CS T     +    K G        N+     
Sbjct: 180 NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN 239

Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
             + +R L ++ V  +DAG+Y+    N+ G+  AT   ++++ 
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 25/179 (13%), Positives = 43/179 (24%), Gaps = 54/179 (30%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G++VT  C        +  + W              P   +D +     + L   +   +
Sbjct: 19  GETVTLRCVS------NGSVEWDGPIS---------PYWTLDPESP--GSTLTTRNATFK 61

Query: 239 DEGEFTCRVANELGEVVTSACLIV--------------DVVKGKDLT------------- 271
           + G + C    +     T+  L V               VV+G++               
Sbjct: 62  NTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDS 121

Query: 272 -----SDGRL----NIITVGGTSVLTIEDITGDDSGKYQVHVSNQ-HGSDSCYASVAVE 320
                  GR      +          I      DS  Y          S S    + V 
Sbjct: 122 VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  115 bits (289), Expect = 4e-31
 Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 15/210 (7%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP----NARVTIREKEDLR 121
              Y    +      ++++  C+ +G  +P   W       T     N+++T    + + 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 122 F----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCC 177
           F    +  S VT +D G YT  V    G       + +     ++  P            
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT----VLVPPSKPTISVPSSVT 117

Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE--NLVIARLKIPHV 235
            G+     C      P     SWF++   +      K    ++S    +     L    V
Sbjct: 118 IGNRAVLTCSEHDGSPPSE-YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 176

Query: 236 YPEDEGEFTCRVANELGEVVTSACLIVDVV 265
              D GE+ C+  N  G  + S    +D V
Sbjct: 177 TAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 71.2 bits (174), Expect = 1e-14
 Identities = 24/207 (11%), Positives = 55/207 (26%), Gaps = 53/207 (25%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
           +  V     +++  + +S+   C       P    + W               ++     
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPR---VEWKFVQGSTTALVCYNSQITAPYA 57

Query: 223 ENLVI--ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV---------------V 265
           + +    + +    V  +D GE+TC V+ E G+      + + V                
Sbjct: 58  DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVT 117

Query: 266 KGKDLT--------------------------------SDGRLNIITVGGTSVLTIEDIT 293
            G                                    +    +      +  L  + +T
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177

Query: 294 GDDSGKYQVHVSNQHGSDSCYASVAVE 320
             DSG+Y     N +G+     +  ++
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAHMD 204

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  112 bits (282), Expect = 6e-30
 Identities = 48/214 (22%), Positives = 74/214 (34%), Gaps = 24/214 (11%)

Query: 60  RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-----ATPNARVTI 114
           R+    PR    P + I   G+     C   G+P P   W K G+        P +   +
Sbjct: 4   RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63

Query: 115 REKEDLRFLEI--SEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGL 171
                L FL I     +  D G+Y     N  G +V   A LE+      I R       
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV-----AILRDDFRQNP 118

Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK 231
            ++    G+    ECQ     P    ISW ++   +    +    + +   +      L 
Sbjct: 119 SDVMVAVGEPAVMECQPPRGHPEPT-ISWKKDGSPLDDKDER---ITIRGGK------LM 168

Query: 232 IPHVYPEDEGEFTCRVANELGEVVTS-ACLIVDV 264
           I +    D G++ C   N +GE  +  A L V  
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 46/201 (22%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDS-DMKPEVQVDS 221
             P+++    +L    G+  T  C+ +  P     I W++    ++ D  D +    +  
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT--IEWYKGGERVETDKDDPRSHRMLLP 65

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDVVK-------------- 266
             +L   R+        DEG + C   N LGE V+  A L V +++              
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV 125

Query: 267 ------------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQV 302
                                   G  L       I   GG   L I      D+GKY  
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDE-RITIRGGK--LMITYTRKSDAGKYVC 182

Query: 303 HVSNQHGSD-SCYASVAVEGR 322
             +N  G   S  A + V  R
Sbjct: 183 VGTNMVGERESEVAELTVLER 203

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  111 bits (280), Expect = 7e-30
 Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 20/204 (9%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWT-SWSKDGKPATPNARVTIREKEDLRFL 123
           P             G  +   C      P   +  W  +  P            +    L
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR----PKVLNGLENLRCCDG 179
            I+ V   D G Y+  V +   +    ++   + P    +       ++   +++    G
Sbjct: 69  YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128

Query: 180 DSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            +VT EC     P P+   I W +    +   +++     V          LKI ++  E
Sbjct: 129 QNVTLECFALGNPVPD---IRWRKVLEPMPSTAEISTSGAV----------LKIFNIQLE 175

Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
           DEG + C   N  G+    A + V
Sbjct: 176 DEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 84.2 bits (208), Expect = 2e-19
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 45  SRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK 104
           S       L                    +    +G  V  +C   G P P   W K  +
Sbjct: 93  SVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLE 152

Query: 105 PATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           P    A ++         L+I  + LED G+Y  + EN  G  +  AR+ +
Sbjct: 153 PMPSTAEISTSGAV----LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 75.3 bits (185), Expect = 3e-16
 Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 56/189 (29%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G  +   C      P+D    W  N   + +  D K      +  NL IA     +V   
Sbjct: 23  GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD-KRRFVSQTNGNLYIA-----NVEAS 76

Query: 239 DEGEFTCRVANELGEVVTSACLIVDVVK-------------------------------- 266
           D+G ++C V++        +  I  +                                  
Sbjct: 77  DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECF 136

Query: 267 --------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
                          + + S      I+  G +VL I +I  +D G Y+    N  G D 
Sbjct: 137 ALGNPVPDIRWRKVLEPMPSTAE---ISTSG-AVLKIFNIQLEDEGIYECEAENIRGKDK 192

Query: 313 CYASVAVEG 321
             A + V+ 
Sbjct: 193 HQARIYVQA 201

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  112 bits (281), Expect = 8e-30
 Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 21/211 (9%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED---- 119
            SPR    P + +    +     C V G+P P   W KDG+P + N + + R +      
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67

Query: 120 LRFLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
             +  +     +D G Y    +N  G  V   A L+I      + R       ++ R   
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI-----AVLRDDFRVEPKDTRVAK 122

Query: 179 GDSVTFEC-QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR---LKIPH 234
           G++   EC   + +P     + W ++   +    D    +   +   + I     L I +
Sbjct: 123 GETALLECGPPKGIPEP--TLIWIKDGVPL----DDLKAMSFGASSRVRIVDGGNLLISN 176

Query: 235 VYPEDEGEFTCRVANELGEVVTS-ACLIVDV 264
           V P DEG + C   N +G   +S A LIV V
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 73.4 bits (180), Expect = 1e-15
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 13/115 (11%)

Query: 62  LTSSPRFYAVPHNKICDLGDTVRFQCS-VTGQPAPWTSWSKDGKP--------ATPNARV 112
                 F   P +     G+T   +C    G P P   W KDG P           ++RV
Sbjct: 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164

Query: 113 TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPK 166
            I +  +L    IS V   D G Y    +N  G+ E+  A+L +    A      
Sbjct: 165 RIVDGGNLL---ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 70.7 bits (173), Expect = 1e-14
 Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 49/205 (23%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
             P+++    +L     +  T  C+V+  P     I WF++   +  +      VQ    
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPT--IEWFKDGEPVSTNEKKSHRVQFKD- 64

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDVVK--------------- 266
              +     +     +D GE+ C   N +G+ V+  A L + V++               
Sbjct: 65  -GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKG 123

Query: 267 -----------------------GKDLTSDGRLNI-----ITVGGTSVLTIEDITGDDSG 298
                                  G  L     ++      + +     L I ++   D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183

Query: 299 KYQVHVSNQHGSD-SCYASVAVEGR 322
            Y+    N  G+  S YA + V+ +
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQVK 208

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  116 bits (291), Expect = 1e-29
 Identities = 40/303 (13%), Positives = 73/303 (24%), Gaps = 65/303 (21%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           S            D+  ++  Q  V         W              ++ +  +  + 
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MV 106

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
           I ++T   AG Y + +++   +      + I +      R      +E       +    
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME-------NQDAL 159

Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
            C  + VP     + W   +   +   +  P V    KE  V+  L           +  
Sbjct: 160 VCISESVPEP--IVEWVLCDSQGESCKEESPAVVK--KEEKVLHEL--------FGTDIR 207

Query: 245 CRVANELGEVVTSACLIVDVVK------------------------------------GK 268
           C   NELG   T    I                                          K
Sbjct: 208 CCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENK 267

Query: 269 DLTSDGRLNIITVGGTSV------LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
            L       + T              +  +  +D+G Y    S         A V +  +
Sbjct: 268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEK 324

Query: 323 KII 325
             I
Sbjct: 325 GFI 327

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  113 bits (283), Expect = 2e-28
 Identities = 30/291 (10%), Positives = 75/291 (25%), Gaps = 47/291 (16%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRF 122
           +   Y +       + +     C     P P   W        +       + +KE+   
Sbjct: 139 NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV- 197

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
             + E+   D         N  G          ++     + P        L    G+ +
Sbjct: 198 --LHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLP-------QLFLKVGEPL 245

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
              C+   V      ++W   N+ ++  +  +      ++  + I    +  V   D G 
Sbjct: 246 WIRCKAVHVNHGF-GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY 304

Query: 243 FTCRVANELGEVV------------TSACLIVDVVKGKDLT-----------------SD 273
           +TC  +    +              T++    ++ + ++                   S 
Sbjct: 305 YTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR 364

Query: 274 GRL--NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
                    +     ++         G+Y  H  N     +   ++ +   
Sbjct: 365 KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 73.9 bits (181), Expect = 6e-15
 Identities = 19/220 (8%), Positives = 52/220 (23%), Gaps = 50/220 (22%)

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
           + ++ ++  +  Y +  E+          L       +     V             S+T
Sbjct: 18  KNNDSSVGKSSSYPMVSESPEDL---GCALRPQSSGTVYEAAAV-------EVDVSASIT 67

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
            +  V           W   +  +               +N  +  + I  +     GE+
Sbjct: 68  LQVLVDAPGN--ISCLWVFKHSSLNCQPHFD-------LQNRGVVSMVILKMTETQAGEY 118

Query: 244 TCRVANELGEVVTSACLIV-----------DVVKGKDLTS------------------DG 274
              + +E         + +              K ++  +                  D 
Sbjct: 119 LLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDS 178

Query: 275 RLNIITVGGTSVLTIED--ITGDDSGKYQVHVSNQHGSDS 312
           +         +V+  E+  +        +    N+ G + 
Sbjct: 179 QGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 67.0 bits (163), Expect = 1e-12
 Identities = 13/109 (11%), Positives = 26/109 (23%), Gaps = 8/109 (7%)

Query: 54  NSAIRTRRLT--SSPRFYAVPHNKI--CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
               ++  +T        A   ++    D  +   F       P    +W+   K     
Sbjct: 311 KHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370

Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
                +  ++   +          G Y    EN+         L I   
Sbjct: 371 ----QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  113 bits (283), Expect = 2e-29
 Identities = 37/301 (12%), Positives = 63/301 (20%), Gaps = 69/301 (22%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
           S P         +   G TV  +C   G       W        P+   T+        L
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVGNGSV----EWDGP-----PSPHWTLYSDGSSSIL 53

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
             +  T ++ G Y      +     A   L + DP    +        + +   +     
Sbjct: 54  STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVL-----AQEVVVFEDQDAL 108

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
             C +         +S  R      +                      I         ++
Sbjct: 109 LPCLLTDPVLEAG-VSLVRVRGRPLMRH---TNYSFSPWHGFT-----IHRAKFIQSQDY 159

Query: 244 TCRVANELGEVVTSACLIVDV------------------------------VKGKD---- 269
            C  A   G  V S  + + V                                  D    
Sbjct: 160 QC-SALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFD 218

Query: 270 -----------LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVA 318
                      +      +         L ++ +    +G Y    SN  G  S      
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278

Query: 319 V 319
           V
Sbjct: 279 V 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 76.2 bits (187), Expect = 5e-16
 Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 3/108 (2%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK---PATPNARVTIREK 117
            +   P    VP   +   G+  +  CS +     +  + +           +       
Sbjct: 182 VIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRY 241

Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
           + +  L + +V  + AG Y+    N  G    +    +++        
Sbjct: 242 QKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHH 289

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 25/197 (12%), Positives = 44/197 (22%), Gaps = 54/197 (27%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
           S P +   +  L    G +VT  C        +  + W              P       
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVG------NGSVEWDGP-----------PSPHWTLY 45

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV--------------DVVKGK 268
            +   + L   +   ++ G + C    +      +  L V               V + +
Sbjct: 46  SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQ 105

Query: 269 DLT-----SDGRLNI-----------------ITVGGTSVLTIEDITGDDSGKYQVHVSN 306
           D       +D  L                    +       TI       S  YQ     
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALM 165

Query: 307 Q-HGSDSCYASVAVEGR 322
                 S    + V+  
Sbjct: 166 GGRKVMSISIRLKVQKV 182

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  107 bits (269), Expect = 2e-29
 Identities = 29/98 (29%), Positives = 46/98 (46%)

Query: 58  RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK 117
            + + T + R    P +     G++ RF C   G+P P  +W + G+  + +AR  +   
Sbjct: 7   HSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT 66

Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           +     EIS V   D G Y++ VEN+ G  EA   L I
Sbjct: 67  KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 78.2 bits (193), Expect = 2e-18
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
            ++L    ++   +G+S  F C     P P    ++W R  +++   +  +         
Sbjct: 15  ARILTKPRSMTVYEGESARFSCDTDGEPVPT---VTWLRKGQVLSTSARHQVTTTKYK-- 69

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
               +  +I  V   DEG ++  V N  G+      L +
Sbjct: 70  ----STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
           G+ L++  R  + T    S   I  +   D G Y V V N  G      ++ ++
Sbjct: 52  GQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  109 bits (273), Expect = 4e-29
 Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 20/192 (10%)

Query: 74  NKICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
             + DLG  +   CS+           W K G     +A          +  E    + +
Sbjct: 7   TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKVDSDD 59

Query: 132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV 191
             G Y+            TA +++  P  + +     +  E      G++    C+ + V
Sbjct: 60  QWGEYSCVFLPE---PMGTANIQLHGPPRVKAVKSSEHINE------GETAMLVCKSESV 110

Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE-DEGEFTCRVANE 250
           PP     +W++             E +     +   + L I ++  E D G++ C   + 
Sbjct: 111 PPVTD-WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 169

Query: 251 LGEVVTSACLIV 262
            G       L V
Sbjct: 170 KGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 68.9 bits (168), Expect = 3e-14
 Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 54/182 (29%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G  +   C +           W +   ++K D+                 + +      +
Sbjct: 13  GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------------QKTEFKVDSDD 59

Query: 239 DEGEFTCRVANE-------------------------LGEVVTSAC------LIVDVVKG 267
             GE++C    E                          GE     C       + D    
Sbjct: 60  QWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY 119

Query: 268 KDLT---------SDGRLNIITVGGTSVLTIEDITG-DDSGKYQVHVSNQHGSDSCYASV 317
           K            S+ R  + +  G S L IE++    D G+Y+ + ++  GSD    ++
Sbjct: 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179

Query: 318 AV 319
            V
Sbjct: 180 RV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 58.9 bits (142), Expect = 1e-10
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATP------NARVTIREK 117
           PR  AV  ++  + G+T    C     P    W  W K              +R  +   
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA-WYKITDSEDKALMNGSESRFFVSSS 142

Query: 118 EDLRFLEISEVTLE-DAGLYTIKVENNYGSVEATARLEI 155
           +    L I  + +E D G Y     ++ GS +A   L +
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score =  106 bits (266), Expect = 6e-29
 Identities = 30/94 (31%), Positives = 46/94 (48%)

Query: 62  LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
           ++S P       +         +F    TG+P P   W+KDGK  T   +  + E +   
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62

Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           FLEI +    D+GLYT  V+N+ GSV ++ +L I
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 82.7 bits (205), Expect = 4e-20
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 161 IISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQV 219
           I S+P ++ GL++          F  +    P P      W ++ + I          ++
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRP---TAIWTKDGKAITQGGK----YKL 55

Query: 220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
              +      L+I      D G +TC V N  G V +S  L +  +
Sbjct: 56  SEDKG--GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 16/55 (29%), Positives = 22/55 (40%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
           GK +T  G+  +    G   L I      DSG Y   V N  GS S    + ++ 
Sbjct: 44  GKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  114 bits (286), Expect = 1e-28
 Identities = 33/288 (11%), Positives = 67/288 (23%), Gaps = 62/288 (21%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           S            D+  ++  Q  V         W              ++ +  +  + 
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MV 106

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
           I ++T   AG Y + +++   +      + I +      R      +E       +    
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME-------NQDAL 159

Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
            C  + VP     + W   +   +   +  P V    ++           ++     +  
Sbjct: 160 VCISESVPE--PIVEWVLCDSQGESCKEESPAVVKKEEKV----------LHELFGTDIR 207

Query: 245 CRVANELGEVVTSACLIVDVVK------------------------------------GK 268
           C   NELG   T    I                                          K
Sbjct: 208 CCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENK 267

Query: 269 DLTSDGRLNIITVGGT------SVLTIEDITGDDSGKYQVHVSNQHGS 310
            L       + T              +  +  +D+G Y    S     
Sbjct: 268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  114 bits (285), Expect = 2e-28
 Identities = 33/310 (10%), Positives = 69/310 (22%), Gaps = 65/310 (20%)

Query: 58  RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIRE 116
           R   +  +             +G+ +  +C           +W  + K         +  
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMST 279

Query: 117 KEDLR------FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNG 170
               R      F  +S V   D G YT     +      +A + I++   I       N 
Sbjct: 280 YSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFI----NATNS 332

Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
            E+      +   F  + +  P      +W  + +    +                   +
Sbjct: 333 SEDYEIDQYEEFCFSVRFKAYPQ--IRCTWTFSRKSFPCEQKGLDNGYS----------I 380

Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV-----DVVKGKDLT----SDG------- 274
                +    GE+     N+  +      L +      + +         SDG       
Sbjct: 381 SKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWT 440

Query: 275 -----------------------RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSD 311
                                      +     S  T+           +    N  G+ 
Sbjct: 441 WKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTS 500

Query: 312 SCYASVAVEG 321
                +   G
Sbjct: 501 CETILLNSPG 510

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  104 bits (261), Expect = 3e-25
 Identities = 27/290 (9%), Positives = 69/290 (23%), Gaps = 51/290 (17%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           +   Y +       + +     C     P P   W             +    +     E
Sbjct: 139 NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK----E 194

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
              +             N  G        +++            L          G+ + 
Sbjct: 195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLK--------VGEPLW 246

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
             C+   V      ++W   N+ ++  +  +      ++  + I    +  V   D G +
Sbjct: 247 IRCKAVHVNHG-FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305

Query: 244 TCRVANELGEVVTSACLIV---------------DVVKGKDL----------------TS 272
           TC  +        SA + +               ++ + ++                 T 
Sbjct: 306 TCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF 362

Query: 273 DGR---LNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
             +        +     ++         G+Y  H  N     +   ++ +
Sbjct: 363 SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 11/103 (10%)

Query: 75  KICDLGDTVRFQCSVTGQPAPWTSWSK-------DGKPATPNARVTIREKEDLR----FL 123
           ++       +  C   G P P  +W K         +  T         ++         
Sbjct: 417 QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS 476

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
            ++        L      N+ G+   T  L    P   I    
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGG 519

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 266 KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
           K   L      ++    G   + I  +T   +G+Y + + ++  + +   +V++    + 
Sbjct: 85  KHSSLNCQPHFDLQN-RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLY 143

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  111 bits (279), Expect = 2e-28
 Identities = 35/226 (15%), Positives = 66/226 (29%), Gaps = 21/226 (9%)

Query: 49  TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCS-------VTGQPAPWTSWSK 101
            P++L  A  T    S          +    G+ V  +C         +  P    +W K
Sbjct: 2   DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK 61

Query: 102 DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
           +    T       R       L +     ED+G Y     N     + +  L + +    
Sbjct: 62  NDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA 121

Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH---DISWFRNNRLIKLDSDMKPEVQ 218
                    +  L      S    C        D     I W++++ L+  D++    V+
Sbjct: 122 FLPFISYPQILTL----STSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR 177

Query: 219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
             +        L +  V  ED G + C +         +    +++
Sbjct: 178 GTTH-------LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIEL 216

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  107 bits (268), Expect = 6e-27
 Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 18/205 (8%)

Query: 71  VPHNKICDLGDTVRFQCS-----VTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           + + +I  L  +    C         +      W KD      +    +  +     L +
Sbjct: 126 ISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTH-LLV 184

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI---MDPRAIISRPKVLNGLENLRCCDGDSV 182
            +V LEDAG Y   +   +   +      I   +  +   + P +++ L+ +    G  +
Sbjct: 185 HDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRL 244

Query: 183 TFECQVQVVPPND-HDISWFRNNRLIKLDSDMKPEVQVDSK-------ENLVIARLKIPH 234
           T  C+V +        + W+  N      +     V    +       EN +   L    
Sbjct: 245 TIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDP 304

Query: 235 VYPEDEG-EFTCRVANELGEVVTSA 258
           V  ED   +F C V N L       
Sbjct: 305 VTREDLHMDFKCVVHNTLSFQTLRT 329

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 74.3 bits (182), Expect = 3e-15
 Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 67/235 (28%)

Query: 133 AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP 192
           A  +T++   + G+  +         R      K    LE      G+ V   C      
Sbjct: 1   ADPFTLQPAAHTGAARS--------CRFRGRHYKREFRLE------GEPVALRCPQVPYW 46

Query: 193 PNDH-----DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
                    +++W +N+    +  + +  +            L +     ED G + C  
Sbjct: 47  LWASVSPRINLTWHKNDSARTVPGEEETRMWAQD------GALWLLPALQEDSGTYVCTT 100

Query: 248 ANELGEVVTSACLIV---------------DVVKGKDLT--------------------- 271
            N       S  L V                +                            
Sbjct: 101 RNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWY 160

Query: 272 ------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
                        ++V GT+ L + D+  +D+G Y+  ++  H       + ++E
Sbjct: 161 KDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 61.2 bits (148), Expect = 8e-11
 Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 17/120 (14%)

Query: 52  SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSV---TGQPAPWTSWSKDGKPATP 108
           S+   I+ ++  + P   +        LG  +   C V   TG P     W         
Sbjct: 213 SIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272

Query: 109 NARVTIREKEDLRF-------------LEISEVTLEDAGL-YTIKVENNYGSVEATARLE 154
           +A    R  E  R              L    VT ED  + +   V N          ++
Sbjct: 273 SAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  107 bits (268), Expect = 3e-28
 Identities = 34/208 (16%), Positives = 59/208 (28%), Gaps = 31/208 (14%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRF 122
             F   P N     G T   +C +      P   W +DG+      + +  +   ED + 
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 123 -------LEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENL 174
                  L I+ + L D G Y   V   + +       + +      +  P      E+ 
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEP------EDR 116

Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
                      CQ Q  P     + W ++   +       P+       +L +  L    
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVD-LLWLQDAVPLATAPGHGPQR------SLHVPGL---- 165

Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIV 262
                   F+C   N  G   +    I 
Sbjct: 166 ---NKTSSFSCEAHNAKGVTTSRTATIT 190

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 39/186 (20%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQV--VPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
               +    N+    G + T  CQ+QV   PP    + W R+ ++++L    + +V +  
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPE---VHWLRDGQILELADSTQTQVPLGE 58

Query: 222 KEN---LVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV-------------DV 264
            E    +V+++L+I  +   D G++ C V       V+    + +              V
Sbjct: 59  DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTV 118

Query: 265 VKGKDLT-----------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQ 307
                                    D        G     ++     + +  +     N 
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNA 178

Query: 308 HGSDSC 313
            G  + 
Sbjct: 179 KGVTTS 184

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 9/96 (9%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLE 124
           P F   P ++           C   G P P    W +D  P                   
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-------HGPQRS 159

Query: 125 ISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPR 159
           +    L     ++ +  N  G     TA + ++  +
Sbjct: 160 LHVPGLNKTSSFSCEAHNAKGVTTSRTATITVLPQQ 195

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score =  102 bits (255), Expect = 3e-27
 Identities = 26/96 (27%), Positives = 41/96 (42%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
           +S P+    P ++    G++V     VTG      +W K  K    +  + +   E+   
Sbjct: 5   SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
           L I     E  G YT+ VEN  GS +A   L ++D 
Sbjct: 65  LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P+++   E+ +   G+SV    +V    P     +W +  + I+    MK E   +    
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPIT--CTWMKFRKQIQESEHMKVENSENG--- 62

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              ++L I     E  G +T  V N+LG       L V
Sbjct: 63  ---SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
            K +     + +      S LTI     +  G Y + V N+ GS     ++ V  +
Sbjct: 45  RKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 99.7 bits (249), Expect = 2e-26
 Identities = 18/90 (20%), Positives = 30/90 (33%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P+            G T   +    G P P  +W+     A     + +  K     +  
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFF 62

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
                 D+G Y +KV+N  G  EA   + +
Sbjct: 63  PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           +PK+L     ++   G +   E      P      +W   +    L  +    + VD+K 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPD--PTATWTVGDSGAALAPE----LLVDAKS 55

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           +     +  P     D G +  +V NELGE      +IV
Sbjct: 56  STTS--IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 60.0 bits (146), Expect = 7e-12
 Identities = 12/54 (22%), Positives = 19/54 (35%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
                    L +     T+ +        DSG Y++ V N+ G D     V V+
Sbjct: 40  DSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 98.9 bits (247), Expect = 3e-26
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRFLE 124
           P F     ++    G  V     V G+P P  SW ++ +P  P+  R     +  L  L 
Sbjct: 6   PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           I      DAG YT K  N YG+ +  ARLE+
Sbjct: 66  ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 82.3 bits (204), Expect = 5e-20
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 12/105 (11%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           P     L +    +G  V    +VQ  P P    +SW RN + ++ D     E       
Sbjct: 6   PTFKVSLMDQSVREGQDVIMSIRVQGEPKP---VVSWLRNRQPVRPDQRRFAEEAEGG-- 60

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
              + RL+I      D G +TC+  NE G     A L    V+G+
Sbjct: 61  ---LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE---VRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 14/51 (27%), Positives = 19/51 (37%)

Query: 271 TSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
               R      GG   L I      D+G Y     N++G+  C A + V G
Sbjct: 48  PDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  104 bits (261), Expect = 4e-26
 Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 11/220 (5%)

Query: 51  YSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPN 109
                 I    +   P      +         +   C +   +     +W K+ +    +
Sbjct: 114 GDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID 173

Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR---PK 166
                +  ++L    I    LED+G Y   V  +   ++    +       +I       
Sbjct: 174 GTKYSQSGQNLI---IHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRF 230

Query: 167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKEN 224
            L     +    G+     C          D  I W   +  I +  D      + S   
Sbjct: 231 KLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI-IGLDFGVYSILTSSGG 289

Query: 225 LVIARLKIPHVYPEDEGE-FTCRVANELGEVVTSACLIVD 263
           +  A L   +V  E  G  +TCR  N   +   +  ++++
Sbjct: 290 ITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 82.6 bits (203), Expect = 4e-18
 Identities = 47/308 (15%), Positives = 86/308 (27%), Gaps = 87/308 (28%)

Query: 79  LGDTVRFQCSVTG---------QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVT 129
           LG+    +C                   +W K GK   P     +  +     L I+  T
Sbjct: 43  LGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP-----LNRRVKNGDLWIANYT 97

Query: 130 LEDAG-LYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQ 187
             D+   Y   V    G  V+   R  I  P + I     L   +         +   C 
Sbjct: 98  SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHD------KYGIDLYCG 151

Query: 188 VQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
           +       ++I+W++NN+ + +D          +K +     L I +   ED G + C V
Sbjct: 152 ILYAKH-YNNITWYKNNQELIIDG---------TKYSQSGQNLIIHNPELEDSGRYDCYV 201

Query: 248 ANELGEVVTSACL----------------------IVDVVKGKDLT-------------- 271
             +   +     +                       ++V  G+                 
Sbjct: 202 HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDD 261

Query: 272 --------------SDGRLNIITVG----GTSVLTIEDITGDDSGK-YQVHVSNQHGSDS 312
                          D  +  I         + L  E++T +  G  Y     N +   +
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321

Query: 313 CYASVAVE 320
              +V +E
Sbjct: 322 LTTTVVLE 329

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 98.2 bits (245), Expect = 8e-26
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
           P F   P +     G   R  C V+G P P  SW  DGKP  P++   +  +E+ +  L 
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
           I  VT  DAG+YT    N  G    +  L +    +  S
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 80.1 bits (198), Expect = 5e-19
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
           RP  L    +L   +G     +C+V  +P P   D+SW  + + ++ DS  K  V+ +  
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP---DLSWQLDGKPVRPDSAHKMLVRENG- 64

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
               +  L I  V   D G +TC   N  G+   S  L+V  
Sbjct: 65  ----VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           GK +  D    ++    G   L IE +T  D+G Y    +N+ G +S    + V  +
Sbjct: 47  GKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 97.8 bits (244), Expect = 1e-25
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
           PRF  VP N   D G   R    V+G PAP  SW  +G+    +    +   E  L  L 
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
              V   DAG Y    +N  G    T +L++
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 79.3 bits (196), Expect = 6e-19
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           P+ +   EN+   +G     + +V  +P P   D+SW+ N R ++ D   K  V      
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAP---DVSWYLNGRTVQSDDLHKMIVSEKG-- 60

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              +  L    V   D G + C   N  GE   +  L V
Sbjct: 61  ---LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
           G+ + SD    +I    G   L  E +   D+G Y     N+ G  +    + V  ++
Sbjct: 43  GRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 97.9 bits (244), Expect = 1e-25
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 55  SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVT 113
               +     +P F   P +K    GD+V+ +C ++  P P   W ++ +    N  R++
Sbjct: 5   HHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRIS 64

Query: 114 IREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
           + +    R  L I +V  +DAG YT+   N  G      RL++   
Sbjct: 65  LYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 82.8 bits (205), Expect = 5e-20
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 145 GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRN 203
           G        E          P  +   ++ +  +GDSV  ECQ+  +P P    + W RN
Sbjct: 2   GHHHHHHSHEHKRA------PMFIYKPQSKKVLEGDSVKLECQISAIPPP---KLFWKRN 52

Query: 204 NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
           N +++ ++D     Q    +N     L I  V  +D G +T    NE G    +  L V 
Sbjct: 53  NEMVQFNTDRISLYQ----DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108

Query: 264 V 264
            
Sbjct: 109 A 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 267 GKDLTSDGRLNIITV--GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
            + +  +     +     G   L I+D+   D+G Y V   N+ G  +C   + V  R
Sbjct: 53  NEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 97.4 bits (243), Expect = 2e-25
 Identities = 20/97 (20%), Positives = 35/97 (36%)

Query: 62  LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
           L  +PR      +     G   RF  +V  +P     W  +G     ++++       + 
Sbjct: 5   LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL 64

Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
            LEI +   +D+G Y     N  G     A L++   
Sbjct: 65  TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 85.0 bits (211), Expect = 6e-21
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 13/106 (12%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           P++   + + R   G +  F   VQ  P     ++ W+ N   ++  S     +   +  
Sbjct: 9   PRITLRMRSHRVPCGQNTRFILNVQSKPTA---EVKWYHNGVELQESSK----IHYTNTS 61

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
            ++   L+I   + +D G +     N  GE    A L    V G D
Sbjct: 62  GVL--TLEILDCHTDDSGTYRAVCTNYKGEASDYATLD---VTGGD 102

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
           G +L    +++     G   L I D   DDSG Y+   +N  G  S YA++ V G
Sbjct: 46  GVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 96.0 bits (239), Expect = 4e-25
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 59  TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE 118
           T       R +AVP        +TV+F+C   G P P   W K+GK      R+   +  
Sbjct: 8   TNTEKMEKRLHAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61

Query: 119 DLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
           +  + L +  V   D G YT  VEN YGS+  T  L+++
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 178 DGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
             ++V F C     P P    + W +N +  K +  +      +         L +  V 
Sbjct: 22  AANTVKFRCPAGGNPMPT---MRWLKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVV 73

Query: 237 PEDEGEFTCRVANELGEVVTSACLIV 262
           P D+G +TC V NE G +  +  L V
Sbjct: 74  PSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           GK+   + R+    V      L +E +   D G Y   V N++GS +    + V
Sbjct: 46  GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 96.8 bits (241), Expect = 9e-25
 Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 22  MSGHSTPRSTPRS-TPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLG 80
           +SG S  +++  S T P + + + +      +    +   +    P F     +     G
Sbjct: 1   ISGMSGRKASGSSPTSPINANKVENED----AFLEEVAEEKPHVKPYFTKTILDMEVVEG 56

Query: 81  DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYTIK 139
              RF C V G P P   W KD  P   +    I   E+    L ISEV  +D   YT K
Sbjct: 57  SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116

Query: 140 VENNYGSVEATARLEIMDPRAIISRPK 166
             N+ G    TA L +           
Sbjct: 117 AVNSLGEATCTAELLVETMGKEGEGEG 143

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 90.7 bits (225), Expect = 2e-22
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 129 TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV 188
             + +G       N        A LE +       +P     + ++   +G +  F+C+V
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65

Query: 189 QVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
           +  P P   ++ WF+++  +K     + +   +         L I  V  +D+ ++TC+ 
Sbjct: 66  EGYPDP---EVMWFKDDNPVKESRHFQIDYDEEG-----NCSLTISEVCGDDDAKYTCKA 117

Query: 248 ANELGEVVTSACLIVDVV 265
            N LGE   +A L+V+ +
Sbjct: 118 VNSLGEATCTAELLVETM 135

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 267 GKDLTSDGRLNIITVG-GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
              +       I     G   LTI ++ GDD  KY     N  G  +C A + VE  
Sbjct: 79  DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 99.6 bits (248), Expect = 9e-25
 Identities = 38/281 (13%), Positives = 76/281 (27%), Gaps = 73/281 (25%)

Query: 80  GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            +TV   C V   P   +  W  +G     +               I+  ++ D+G Y  
Sbjct: 16  EETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS----------YRITSASVNDSGEYRC 65

Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
           +   +  S     +LEI     ++          +    +G+ +   C         +++
Sbjct: 66  QRGLSGRS--DPIQLEIHRGWLLLQVS-------SRVFTEGEPLALRCHAWKDKLV-YNV 115

Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
            ++RN +  K                   + L I        G + C    +        
Sbjct: 116 LYYRNGKAFKFFHWN--------------SNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161

Query: 259 CLIV---------------DVVKGKDLT--------------------SDGRLNIITVGG 283
            + V                +++G  +T                      G   +     
Sbjct: 162 SVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT 221

Query: 284 TSVLTIEDITGDDSGKYQVHVSNQHGS---DSCYASVAVEG 321
           +S   I     +DSG Y    + + G+    S    + V G
Sbjct: 222 SSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 66.9 bits (163), Expect = 6e-13
 Identities = 28/171 (16%), Positives = 49/171 (28%), Gaps = 45/171 (26%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            ++VT  C+V  +P +     WF N    +  +                   +I      
Sbjct: 16  EETVTLHCEVLHLPGS-SSTQWFLNGTATQTSTP----------------SYRITSASVN 58

Query: 239 DEGEFTCRVAN-----ELGEVVTSACLIVD-----VVKGKDLT----------------- 271
           D GE+ C+         +   +    L++        +G+ L                  
Sbjct: 59  DSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118

Query: 272 SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
            +G+         S LTI       +G Y      +H   S   SV V+  
Sbjct: 119 RNGKA-FKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL 168

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 52  SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-----WTSWSKDGKPA 106
           S   ++  + L  +P   A   + + + G+ V   C             + S+    K  
Sbjct: 158 SAGISVTVKELFPAPVLNASVTSPLLE-GNLVTLSCETKLLLQRPGLQLYFSFYMGSKT- 215

Query: 107 TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIM 156
                  +R +      +I     ED+GLY  +     G+V   +  LE+ 
Sbjct: 216 -------LRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQ 259

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 95.5 bits (238), Expect = 1e-24
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 4/112 (3%)

Query: 50  PYSLNSAIRTRRLTSSPRFYAVPHNK---ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA 106
             +L   +  R +   P+     H +   I  +G+ +       G+P P   W+K G P 
Sbjct: 6   SGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL 65

Query: 107 TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
             + RV +R  +      + +    D+G Y + V+       AT R+ +++ 
Sbjct: 66  DTS-RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 9/84 (10%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G+ +      Q  P     + W +    +         V V + +   +    +      
Sbjct: 39  GEQLNLVVPFQGKPR--PQVVWTKGGAPLDTS-----RVHVRTSDFDTV--FFVRQAARS 89

Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
           D GE+   V  E  +   +  + V
Sbjct: 90  DSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           G  L +  R+++ T    +V  +      DSG+Y++ V  ++  D+    + V  +
Sbjct: 62  GAPLDTS-RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 99.4 bits (247), Expect = 2e-24
 Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 6/200 (3%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFL 123
             + + V              +C +T       S  + DGK    +       K  +   
Sbjct: 91  PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITI- 149

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
             +              + + G+   + +  +    AI + P V     +     GD+ T
Sbjct: 150 -KNVKRAYHRLCVRCAAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT 207

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI-ARLKIPHVYPEDEGE 242
             C ++ V  +  +  W + N   +  + +K         N      L I     +D G 
Sbjct: 208 VVCTIKDVSTS-VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGV 266

Query: 243 FTCRVANELGEVVTSACLIV 262
           F C   N  G    +  L V
Sbjct: 267 FMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 80.9 bits (199), Expect = 1e-17
 Identities = 41/309 (13%), Positives = 71/309 (22%), Gaps = 80/309 (25%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
           S P  +      I + GDT+   C           W+                +      
Sbjct: 11  SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYF-------NEMVENKKNEW 59

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
              +      G YT    N   S   +  + + DP  +      L G E           
Sbjct: 60  IQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFLVGLPLFGKE------DSDAL 110

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
             C +     +    S    +    L +D+      + K  + I  +             
Sbjct: 111 VRCPLTDPQVSQ--YSLIECDGK-SLPTDLT--FVPNPKAGITIKNV----KRAYHRLCV 161

Query: 244 TCRVANELGEVVTSACLIVDVVK-------------------GKDLT------------- 271
            C    + G  + S    + V +                   G   T             
Sbjct: 162 RCAAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVN 220

Query: 272 ------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
                             +              LTI     DDSG +  + +N  GS + 
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV 280

Query: 314 YASVAVEGR 322
             ++ V  +
Sbjct: 281 TTTLKVVEK 289

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 97.0 bits (241), Expect = 2e-24
 Identities = 30/196 (15%), Positives = 52/196 (26%), Gaps = 30/196 (15%)

Query: 79  LGDTVRFQCS---VTGQPAPWTSWSKDGKPATP-----------------NARVTIREKE 118
           LG+ V        V+  P    SW K G                           I    
Sbjct: 5   LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA 64

Query: 119 DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
           +  FL ++   +   G Y  +++     V     L ++ P  +          E  +  D
Sbjct: 65  NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHS------ERSQFPD 118

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
              +T  C V   P     + W     +    +     V  +   +L +       +   
Sbjct: 119 FSVLTVTCTVNAFPHP--HVQWLMPEGVEPAPTAANGGVMKEKDGSLSV--AVDLSLPKP 174

Query: 239 DEGEFTCRVANELGEV 254
                TC   N+  E 
Sbjct: 175 WHLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 63.1 bits (153), Expect = 4e-12
 Identities = 11/88 (12%), Positives = 18/88 (20%), Gaps = 4/88 (4%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK----DGKPATPNARVTIREKEDLR 121
                            +   C+V   P P   W      +  P   N  V   +   L 
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164

Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEA 149
                 +        T   +N+      
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 26/194 (13%), Positives = 42/194 (21%), Gaps = 53/194 (27%)

Query: 179 GDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR-------- 229
           G+ VT     + V      ++SWF+     +     +    V   E              
Sbjct: 6   GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65

Query: 230 ---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT-- 271
              L +       +G + CR+     EV     L V                    LT  
Sbjct: 66  TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125

Query: 272 -------------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSN 306
                                    ++G +     G  SV     +             N
Sbjct: 126 CTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKN 185

Query: 307 QHGS-DSCYASVAV 319
                   Y S  +
Sbjct: 186 DKEEAHGVYVSGYL 199

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 98.6 bits (245), Expect = 7e-24
 Identities = 36/211 (17%), Positives = 57/211 (27%), Gaps = 22/211 (10%)

Query: 71  VPHNKICDLGDTVRFQCS------VTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
               +   +       C             P   W KD KP   +       K+ L    
Sbjct: 109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI--- 165

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIM---DPRAIISRPKVLNGLEN-LRCCDGD 180
           +  V  +  G YT      Y   +      I          +RP +++     +    G 
Sbjct: 166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGS 225

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSD------MKPEVQVDSKENLVIARLKIPH 234
            +   C V     +     W  N  +I  D           E   + + + +I  L I  
Sbjct: 226 QIQLICNVTGQLSDI--AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISE 283

Query: 235 VYPED-EGEFTCRVANELGEVVTSACLIVDV 264
           +     +  FTC   N  G       LI  V
Sbjct: 284 IESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 94.8 bits (235), Expect = 1e-22
 Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 16/191 (8%)

Query: 80  GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            +     C +       T +W KD      +     R  +    L      +ED+G Y  
Sbjct: 20  NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 79

Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPND--- 195
            V N+   +      + ++    +        +   +          C       N+   
Sbjct: 80  VVRNSSYCLRIKISAKFVENEPNLCYNA--QAIFKQKLPVAGDGGLVCPYMEFFKNENNE 137

Query: 196 -HDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254
              + W+++ + + LD+            + V  RL + +V  +  G +TC  +      
Sbjct: 138 LPKLQWYKDCKPLLLDN---------IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 188

Query: 255 VTSACLIVDVV 265
                 +++ +
Sbjct: 189 QYPITRVIEFI 199

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 21/185 (11%), Positives = 44/185 (23%), Gaps = 50/185 (27%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            +     C +         I+W++++    + ++    +    +      +L       E
Sbjct: 20  NEIDVRPCPLNPNEHK-GTITWYKDDSKTPVSTEQASRIHQHKE------KLWFVPAKVE 72

Query: 239 DEGEFTCRVANELGEVVTSACLIV-----------------DVVKGKDLT---------- 271
           D G + C V N    +                          +    D            
Sbjct: 73  DSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFK 132

Query: 272 ------------SDGRL----NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYA 315
                        D +     NI   G    L + ++     G Y  H S  +       
Sbjct: 133 NENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPI 192

Query: 316 SVAVE 320
           +  +E
Sbjct: 193 TRVIE 197

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 66  PRFYAVPHNKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE------ 118
           P   +  +  +  DLG  ++  C+VTGQ +    W  +G     +  V   +        
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268

Query: 119 ------DLRFLEISEVTLED-AGLYTIKVENNYGSVEATARL 153
                  +  L ISE+        +T   +N +G   A  +L
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 93.2 bits (232), Expect = 7e-24
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 60  RRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR 115
           R+LT     +P       N+   +G+++   C+ +G P P   W KD +    ++ + + 
Sbjct: 1   RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL- 59

Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
            K+  R L I  V  ED GLYT +  +  G  +  A   I   
Sbjct: 60  -KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 83.5 bits (207), Expect = 3e-20
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSD--MKPEVQVDS 221
           P +   LEN     G+S+   C     P P    I WF++N  +  DS   +K   +   
Sbjct: 11  PTITGNLENQTTSIGESIEVSCTASGNPPP---QIMWFKDNETLVEDSGIVLKDGNR--- 64

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
                   L I  V  EDEG +TC+  + LG     A  I++ 
Sbjct: 65  -------NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
            + L  D    I+   G   LTI  +  +D G Y     +  G     A   +EG
Sbjct: 48  NETLVEDSG--IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 97.6 bits (242), Expect = 3e-23
 Identities = 30/254 (11%), Positives = 69/254 (27%), Gaps = 36/254 (14%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           G ++          +P               +           L +S++ L+D+G +T  
Sbjct: 111 GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCT 160

Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNG----------LENLRCCDGDSVTFECQVQ 189
           V  N   VE    + ++  +   S      G              +      + ++ +  
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220

Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
               +       +N  +        P++Q+  K  L +  L          G  T  +  
Sbjct: 221 SSSKSWITFDL-KNKEVSVKRVTQDPKLQMGKKLPLHL-TLPQALPQYAGSGNLTLALEA 278

Query: 250 ELGEVVTSACLIVDVVKGKDLT----SDG----------RLNIITVGGTSVLTIEDITGD 295
           + G++     L+V               G          +L       +       +   
Sbjct: 279 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP 338

Query: 296 DSGKYQVHVSNQHG 309
           ++G +Q  +S+   
Sbjct: 339 EAGMWQCLLSDSGQ 352

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 78.7 bits (193), Expect = 1e-16
 Identities = 33/250 (13%), Positives = 65/250 (26%), Gaps = 50/250 (20%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----------------- 122
           GDTV   C+ + + +    W    +      + +   K   +                  
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
           L I  + +ED+  Y  +VE+    V+        +    + +              G S+
Sbjct: 69  LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ--------------GQSL 114

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
           T   +          +                               L +  +  +D G 
Sbjct: 115 TLTLESPPGSS--PSVQCRSPRGKNIQGGK----------------TLSVSQLELQDSGT 156

Query: 243 FTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQV 302
           +TC V     +V     ++V   + K  +   +     V  +  L         SG+   
Sbjct: 157 WTCTVLQNQKKVEFKIDIVVLAFQ-KASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW 215

Query: 303 HVSNQHGSDS 312
                  S S
Sbjct: 216 QAERASSSKS 225

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 69.8 bits (170), Expect = 1e-13
 Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 31/174 (17%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI----------- 227
           GD+V   C             W  +N++  L +      +  SK N              
Sbjct: 9   GDTVELTCTASQKKS--IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66

Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI-----VDVVKGKDLT----SDG---- 274
             L I ++  ED   + C V ++  EV      +       +++G+ LT    S      
Sbjct: 67  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 126

Query: 275 -----RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
                      + G   L++  +   DSG +   V            + V   +
Sbjct: 127 SVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 180

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 90.8 bits (226), Expect = 4e-23
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI-REKEDLRFLE 124
           P+ +    ++    G    F+  V G+P P   W K+G     + R+     ++++  L 
Sbjct: 6   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 65

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           I +VT ED+    +K  N  G   + A L +
Sbjct: 66  IRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 85.0 bits (211), Expect = 6e-21
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVD 220
           +  PK+   +++     G    F  +V   P P   +  W++N   I+    +       
Sbjct: 3   MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDP---ECEWYKNGVKIERSDRIY---WYW 56

Query: 221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            ++N  +  L I  V  ED      +  N  GE  + A L+V
Sbjct: 57  PEDN--VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           G  +    R+           L I D+TG+DS    V   N  G  S +A + V+ +
Sbjct: 43  GVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 95.9 bits (238), Expect = 6e-23
 Identities = 47/307 (15%), Positives = 85/307 (27%), Gaps = 68/307 (22%)

Query: 71  VPHNKICDLGDTVRFQCSVTGQPAPWT-----SWSKDGKPAT-----PNARVTIREKEDL 120
            P      LGD+V   C +       T     +W++ G+  +          +  E + L
Sbjct: 6   APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65

Query: 121 RF-------------LEISEVTLEDAGLYTIKVENN-YGSVEATARLEIMDPRAIISRPK 166
            F             L +  + +ED G YT        GS      L ++        P+
Sbjct: 66  EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK------PQ 119

Query: 167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
               ++ ++          C      P    I+W  +   +   S         S    V
Sbjct: 120 NTAEVQKVQLTGEPVPMARCVSTGGRPPA-QITWHSDLGGMPNTSQ---VPGFLSGTVTV 175

Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV----------------VKGKDL 270
            +   +      D    TC+V +E  E      + + V                +   + 
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEA 235

Query: 271 T------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
           T                  + G L    V   + L I  +    +     +V+N  G+  
Sbjct: 236 TLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQ 295

Query: 313 CYASVAV 319
              +V V
Sbjct: 296 AELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 90.9 bits (225), Expect = 3e-21
 Identities = 33/203 (16%), Positives = 51/203 (25%), Gaps = 24/203 (11%)

Query: 66  PRFYAVPHNKICDLGDTVRFQC-SVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-- 122
           P+  A               +C S  G+P    +W  D       ++V       +    
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177

Query: 123 -LEISEVTLEDAGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDG 179
              +   +  D    T KVE+         T  L +  P  +       N          
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG-----Q 232

Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
           +  T  C  +  P      +W      +       P   V     L+I       V    
Sbjct: 233 NEATLTCDARSNPEP-TGYNWSTTMGPL-------PPFAVAQGAQLLI-----RPVDKPI 279

Query: 240 EGEFTCRVANELGEVVTSACLIV 262
                C V N LG       + V
Sbjct: 280 NTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 33/198 (16%), Positives = 52/198 (26%), Gaps = 56/198 (28%)

Query: 179 GDSVTFECQVQVVPPNDHD---ISWFRNNR---LIKLDSDMKPEVQVDSKENLVIAR--- 229
           GDSVT  C +QV          ++W R+     +        P      +   V AR   
Sbjct: 15  GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74

Query: 230 ------LKIPHVYPEDEGEFTCRVAN-ELGEVVTSACLIV-------------DVVKGKD 269
                 L++  +  EDEG +TC       G       L V              +     
Sbjct: 75  ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPV 134

Query: 270 LT-----SDGR----------------------LNIITVGGTSVLTIEDITGDDSGKYQV 302
                  + GR                          TV  TS+  +   +  D      
Sbjct: 135 PMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTC 194

Query: 303 HVSNQHGSDSCYASVAVE 320
            V ++        +V + 
Sbjct: 195 KVEHESFEKPQLLTVNLT 212

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 95.7 bits (237), Expect = 6e-23
 Identities = 41/256 (16%), Positives = 83/256 (32%), Gaps = 43/256 (16%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTG---QPAPWT-SWSKDGKPATPNARVTIREKEDL 120
           +       + +    GD      +V G    P+  T +W+KD +P   N           
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53

Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
             L +++ T E+AG Y + V++        + + +M+   +      +   ++       
Sbjct: 54  --LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL---IVNITEPQHFYVSSQT 108

Query: 181 SVTFECQVQVV----PPNDHDIS--WFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
            V     V+      P +++++   W +   +I    D                 + I  
Sbjct: 109 DVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD-----------------ITIQE 151

Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLT---IED 291
              +  G +T +V  E  +   SA   + +              + +G    L     ED
Sbjct: 152 FTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSED 211

Query: 292 ITGDDSGKYQVHVSNQ 307
           I GD SG   + +   
Sbjct: 212 IVGDSSGMPNLTIKYN 227

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 74.1 bits (181), Expect = 3e-15
 Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 33/231 (14%)

Query: 54  NSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSV---TGQPAPWT-----SWSKDGKP 105
            S +              P +        V    +V    G+          SWSK    
Sbjct: 81  ESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDV 140

Query: 106 ATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
                            + I E T +  G+YT+KV        A+A  +IM     + + 
Sbjct: 141 IDTTQD-----------ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD 189

Query: 166 KVLNGLENLRCCDGDSVTFECQVQV--------VPPNDHDISWF--RNNRLIKLDSDMKP 215
                +E+     G+ ++    V          +P      +W+  R  +L       + 
Sbjct: 190 ----VVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEV 245

Query: 216 EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
              ++         L       +D  +F C           +  +     +
Sbjct: 246 GEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSR 296

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 64.1 bits (155), Expect = 8e-12
 Identities = 27/193 (13%), Positives = 53/193 (27%), Gaps = 54/193 (27%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS--WFRNNRLIKLDSDMKPEVQVDSK 222
             V           GD  T    V    P   +++  W ++++  + ++           
Sbjct: 3   FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------- 51

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV----------------DVVK 266
                A L +     E+ G +   V +        + + +                 V  
Sbjct: 52  -----ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS 106

Query: 267 GKDLT-------SDG-------------RLNIITVGGTSVLTIEDITGDDSGKYQVHVSN 306
             D+        S G                   +  T  +TI++ T D +G Y V V  
Sbjct: 107 QTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWG 166

Query: 307 QHGSDSCYASVAV 319
           +    +  AS  +
Sbjct: 167 ESEDSAASASTKI 179

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 89.7 bits (223), Expect = 1e-22
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P F +V  +     G     QCSV G P P  +W  +G+P              +  L I
Sbjct: 12  PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE---AGVAELHI 68

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
            +   ED G YT   EN  G V  +A + +
Sbjct: 69  QDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 79.7 bits (197), Expect = 5e-19
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           P   + L++    +G     +C V+  P P    I+W  N + I+               
Sbjct: 12  PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPR---ITWLLNGQPIQYA----RSTCEAG-- 62

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              +A L I    PED G +TC   N LG+V  SA + V
Sbjct: 63  ---VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           G+ +            G + L I+D   +D G Y     N  G  SC A V V
Sbjct: 49  GQPIQYARS---TCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 89.0 bits (221), Expect = 2e-22
 Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKED-L 120
           + +P F     +     G  V F C V G P P   W KDGK  +P +   TI+   D  
Sbjct: 6   SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65

Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
             L  +  TL+D G YTI   N  G +  T RL +   
Sbjct: 66  CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 85.5 bits (212), Expect = 6e-21
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           P     L++ +  +G  VTF C+V   P P    I WF++ + I   SD         ++
Sbjct: 9   PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPK---IYWFKDGKQISPKSD----HYTIQRD 61

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
                 L       +D+G +T   AN  G +  +  L+V  V
Sbjct: 62  LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 267 GKDLTSDGRLNIIT--VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
           GK ++       I   + GT  L     T DD G Y +  +N  G  SC   + V+ 
Sbjct: 46  GKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 94.9 bits (235), Expect = 3e-22
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 22/221 (9%)

Query: 60  RRLTSSPRFYAVPHNKICDLGDTVRFQC-----SVTGQPAPWTSWSKDGKPATPNARVTI 114
           ++ +       +P +K+       R  C            P  +W            V  
Sbjct: 115 QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP 174

Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNY----GSVEATARLEIMDPRAIISRPKVLNG 170
                   L      + + G YT  V          +  T  ++++        P + + 
Sbjct: 175 EGM----NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP 230

Query: 171 LEN--LRCCDGDSVTFECQVQVVPPND--HDISWFRNNRLIKLDSD----MKPEVQVDSK 222
            ++       G+ +   C V      D  +++ W  + +     +      +      ++
Sbjct: 231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTE 290

Query: 223 ENLVIARLKIPHVYPEDEG-EFTCRVANELGEVVTSACLIV 262
           +      L I  V  ED    + C   +  GEV  +A +  
Sbjct: 291 DETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 77.2 bits (189), Expect = 3e-16
 Identities = 31/202 (15%), Positives = 57/202 (28%), Gaps = 32/202 (15%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE-----DLRFLEISEVTLEDAG 134
              ++F  S          W    +       +  R  E     +   L      L D G
Sbjct: 33  EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92

Query: 135 LYTIKVENNYGSVEATARLEIMDPRAIISRPK--------VLNGLENLRCCDGDSVTFEC 186
            YT  + N     +    LE++   +  + P         +  G++ + C +      + 
Sbjct: 93  NYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPN-----VDG 147

Query: 187 QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
                      I+W+     I+  +++ PE             L        + G +TC 
Sbjct: 148 YFPSSVK--PTITWYMGCYKIQNFNNVIPEGM----------NLSFLIALISNNGNYTCV 195

Query: 247 VANELGEVV--TSACLIVDVVK 266
           V           +  L V VV 
Sbjct: 196 VTYPENGRTFHLTRTLTVKVVG 217

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 18/125 (14%)

Query: 52  SLNSAIRTRRLTSSPRFYAVPHNKI---CDLGDTVRFQCSVT----GQPAPWTSWSKDGK 104
           +L   +      + P     P++ +    + G+ +   C+V             W+ DGK
Sbjct: 210 TLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGK 269

Query: 105 PATPNAR----------VTIREKEDLRFLEISEVTLED-AGLYTIKVENNYGSVEATARL 153
                                ++   + L I +VT ED    Y     +  G V   A++
Sbjct: 270 KPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329

Query: 154 EIMDP 158
           +   P
Sbjct: 330 KQKVP 334

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 93.3 bits (231), Expect = 7e-22
 Identities = 37/200 (18%), Positives = 63/200 (31%), Gaps = 18/200 (9%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P       N   D+GD V  +C V G+      W         +A V          L +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTEL--EQSATVMKSGGLPSLGLTL 216

Query: 126 SEVTLE-DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
           + VT + +    T   EN+ G  E + ++ +  P ++     V                 
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEM----------HHWCI 266

Query: 185 ECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI-ARLKIPHVYPEDEGE 242
              V   P P+   + W  N  ++   S +  E    +    V    L++      + G 
Sbjct: 267 PFSVDGQPAPS---LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 323

Query: 243 FTCRVANELGEVVTSACLIV 262
           +T   AN  G+   S     
Sbjct: 324 YTLLAANPFGQASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.5 bits (177), Expect = 2e-14
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF--- 122
             F A                 SV GQPAP   W  +G      + +     E       
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306

Query: 123 ----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
               L +++ T  + G YT+   N +G   A+     MD 
Sbjct: 307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 26/194 (13%), Positives = 41/194 (21%), Gaps = 48/194 (24%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P +   + N     GD V   CQV+          W               +        
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQ--AGWILTELEQSATVM---KSGGLPSLG 213

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
           L +           +    TC   N++G    S  + V                      
Sbjct: 214 LTL----ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFS 269

Query: 267 --------------GKDLTSDGRLNI-------ITVGGTSVLTIEDITGDDSGKYQVHVS 305
                         G  L     +                 L +   T  ++G Y +  +
Sbjct: 270 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329

Query: 306 NQHGSDSCYASVAV 319
           N  G  S     A 
Sbjct: 330 NPFGQASASIMAAF 343

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 90.2 bits (223), Expect = 1e-21
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 5/185 (2%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
             TV   C  +      +  ++  +         I   +  +   I    +  AG+   +
Sbjct: 24  NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCE 82

Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS 199
            + N  S ++   + ++    I     VL+    +    G+ +   C  +       D +
Sbjct: 83  AKINDESYQSIMYIVVVVGYRIY--DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 140

Query: 200 WFRNNRLIKLDSDMKPEV--QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
           W   +   +    +  ++  Q  S+    ++ L I  V   D+G +TC  ++ L     S
Sbjct: 141 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200

Query: 258 ACLIV 262
             + V
Sbjct: 201 TFVRV 205

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 58.3 bits (140), Expect = 3e-10
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 10/97 (10%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAP-----WTSWSKDGKPATPNARVTIREKEDLRF---- 122
            H     +G+ +   C+   +        W   S   +      R    +          
Sbjct: 112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 171

Query: 123 -LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
            L I  VT  D GLYT    +   + + +  + + + 
Sbjct: 172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 51.3 bits (122), Expect = 7e-08
 Identities = 28/211 (13%), Positives = 49/211 (23%), Gaps = 59/211 (27%)

Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
           I+     +G+  +      +V   C   +   N   +S        +   D    +  DS
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLGSISNLN---VSLCARYPEKRFVPDGN-RISWDS 62

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-----------------DV 264
           K+   I     P       G   C          +   ++V                 ++
Sbjct: 63  KKGFTI-----PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 117

Query: 265 VKGKDLT---------------------------------SDGRLNIITVGGTSVLTIED 291
             G+ L                                     +         S LTI+ 
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177

Query: 292 ITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           +T  D G Y    S+   +      V V   
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 86.2 bits (214), Expect = 2e-21
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
             + + + G  V++ C +         +W    +    + +  I  ++ +  L + ++T 
Sbjct: 8   IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITK 67

Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
            D G Y  KV N+YG   + A L +
Sbjct: 68  LDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 19/103 (18%), Positives = 46/103 (44%), Gaps = 12/103 (11%)

Query: 160 AIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV 219
           A++S       + +    +G  V + C+++    +   ++W+   R ++         ++
Sbjct: 2   AMVSGQ-----IMHAVGEEGGHVKYVCKIENYDQSTQ-VTWYFGVRQLENSEK----YEI 51

Query: 220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
             ++   +A L +  +   D+G + C+V N+ GE  + A L V
Sbjct: 52  TYEDG--VAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
            + L +  +  I    G ++L ++DIT  D G Y+  V N +G DS YA + V+G +
Sbjct: 40  VRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 86.7 bits (215), Expect = 2e-21
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
                   +     G +  F+C ++        W  D  P   N    I  +      L 
Sbjct: 14  VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT 73

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
           + ++ L+D+G    +     G   A+A L + +  ++ SR  
Sbjct: 74  LRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSG 111

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 16/114 (14%)

Query: 149 ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK 208
           + +   +   R       ++  LE++   +G S TF C++         + WF +   + 
Sbjct: 3   SGSSGLVQGRR-----VHIIEDLEDVDVQEGSSATFRCRISPANY--EPVHWFLDKTPLH 55

Query: 209 LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            +       ++D++       L +  +  +D G          G+   SA L V
Sbjct: 56  ANEL----NEIDAQPGGYH-VLTLRQLALKDSGTIYFEA----GDQRASAALRV 100

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 267 GKDLTSDGRLNIIT-VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
              L ++    I    GG  VLT+  +   DSG          G     A++ V  +  +
Sbjct: 51  KTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSV 106

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 91.3 bits (226), Expect = 4e-21
 Identities = 47/315 (14%), Positives = 85/315 (26%), Gaps = 66/315 (20%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT----SWSKDGKP-------ATPNARV 112
              +   V  +    +G  V   CS             +W K             P+  V
Sbjct: 13  DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72

Query: 113 TIREKEDLRF-----------LEISEVTLEDAGLYTIKVENN-YGSVEATARLEIMDP-- 158
           ++      R            + +S + LED G+Y  +      G+ E+   L +M    
Sbjct: 73  SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPT 132

Query: 159 RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ 218
             I     VL   +     D   +   C      P    +SW    +          E++
Sbjct: 133 NWIEGTQAVLRAKKG---QDDKVLVATCTSANGKPPSV-VSWETRLKGEAEYQ----EIR 184

Query: 219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV--------------DV 264
             +    VI+R ++       +    C V   +     S  L V                
Sbjct: 185 NPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWY 244

Query: 265 VKGKDLT------------------SDGRL-NIITVGGTSVLTIEDITGDDSGKYQVHVS 305
           ++  D+                    +G L   +     ++     I    +G Y    +
Sbjct: 245 LQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEAT 304

Query: 306 NQHGSDSCYASVAVE 320
           N  G+ S    V + 
Sbjct: 305 NPIGTRSGQVEVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 11/87 (12%), Positives = 20/87 (22%), Gaps = 6/87 (6%)

Query: 80  GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
              V+  C     P      W+                  +        +    AG Y  
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ-----NRTLFFKGPINYSLAGTYIC 301

Query: 139 KVENNYGSVEATARLEIMDPRAIISRP 165
           +  N  G+      + I +  A+    
Sbjct: 302 EATNPIGTRSGQVEVNITEAAALEHHH 328

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 86.0 bits (213), Expect = 4e-21
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-ATPNARVTIREKEDLRFLE 124
           P     P N+   +  T    C  TG P P   W KDG   +T ++R+   E   L+   
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ--- 65

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
           I    L D G YT       G    +A +E+ +    +  P+
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPR 107

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P +  G  N       +    C     P     I W ++  L+          ++   EN
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPV--PTILWRKDGVLVSTQDS-----RIKQLEN 61

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
                L+I +    D G +TC  +   GE   SA + V  
Sbjct: 62  ---GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE 98

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
           G  +++          G   L I      D+G+Y    S   G  +  A + V+   + 
Sbjct: 46  GVLVSTQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP 102

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 85.5 bits (212), Expect = 4e-21
 Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
           +S  +      ++  +LG  +  +C ++        W+K+G P   + R+ + +K  +  
Sbjct: 5   SSGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGRIHK 62

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
           L I+    ED G Y    +    +V   A++ ++  
Sbjct: 63  LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
            K+L  L +     G  +  +C++    P      W +N   ++    +K  V    +  
Sbjct: 8   LKILTPLTDQTVNLGKEICLKCEISENIP----GKWTKNGLPVQESDRLK--VVQKGR-- 59

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
             I +L I +   EDEG++      +   V   A + V  
Sbjct: 60  --IHKLVIANALTEDEGDYVFA--PDAYNVTLPAKVHVIS 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 10/51 (19%), Positives = 17/51 (33%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
           G  +    RL ++  G    L I +   +D G Y       + +      V
Sbjct: 43  GLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHV 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 85.1 bits (211), Expect = 4e-21
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
           SS        + +   GD ++ +C +        +W +DG     + R  I  +E    +
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE----V 56

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
           E+ +    D+GLY     +  GS      + + D  A+ S P
Sbjct: 57  EVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSD--ALPSGP 96

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
           S       +E+     GD +   C+++    +   I+W R+   +   +  +   +    
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDVQS---INWLRDGVQLAESNRTRITGEE--- 55

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                  +++    P D G + C  ++  G   T   + V
Sbjct: 56  -------VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
           G  L    R  I        + ++D    DSG Y    S+  GSD+ Y SV V 
Sbjct: 40  GVQLAESNRTRI----TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 85.1 bits (211), Expect = 5e-21
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
                   +      +   F+C V+ +      W K+G    P+ R+TI        L I
Sbjct: 9   LEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVI 67

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
            +V  ED G YT   +    ++  +A+L  ++ +  +S P
Sbjct: 68  DDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIK--VSGP 103

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           + +VL  + +L     +   F+C+V           W++N   ++    +          
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSDEKV---TGKWYKNGVEVRPSKRITISHVGR--- 61

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
                +L I  V PEDEG++T            SA L    +K
Sbjct: 62  ---FHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIK 99

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 17/95 (17%)

Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIE 290
           V   ++  F C V++E               K    G ++    R+ I  VG    L I+
Sbjct: 20  VKAAEQAVFKCEVSDEKVTG-----------KWYKNGVEVRPSKRITISHVGRFHKLVID 68

Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
           D+  +D G Y           S  A +     K+ 
Sbjct: 69  DVRPEDEGDYTFVPDGYAL--SLSAKLNFLEIKVS 101

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 87.5 bits (216), Expect = 1e-20
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 12/177 (6%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           +GD+V   CS TG  +P+ SW              +  +     L ++ V+  +   Y  
Sbjct: 15  IGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLC 71

Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-D 197
                   +E   ++EI                       G  +T +C V  V P D  +
Sbjct: 72  TATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEA------GKPITVKCSVADVYPFDRLE 125

Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254
           I   + + L  + S    E             +    V  +      CR    + E+
Sbjct: 126 IDLLKGDHL--MKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM 180

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 11/88 (12%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           GDSV+  C            SW        +DS +  +V  +       + L +  V   
Sbjct: 16  GDSVSLTCSTTGCES--PFFSWRTQ-----IDSPLNGKVTNEG----TTSTLTMNPVSFG 64

Query: 239 DEGEFTCRVANELGEVVTSACLIVDVVK 266
           +E  + C    E  ++     + +    
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEIYSFP 92

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 86.5 bits (214), Expect = 1e-20
 Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 36/186 (19%)

Query: 80  GDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           G+ V   C+         T W  +G  +                L I     ED+G Y  
Sbjct: 19  GENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS----------LNIVNAKFEDSGEYKC 68

Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
           + +    S      +         S   V+         +G  +   C         + +
Sbjct: 69  QHQQVNESEPVYLEVFSDWLLLQASAEVVM---------EGQPLFLRCHGWRNWDV-YKV 118

Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
            ++++   +K   +                 + I +   ED G + C       +   S 
Sbjct: 119 IYYKDGEALKYWYEN--------------HNISITNATVEDSGTYYCTGKVWQLD-YESE 163

Query: 259 CLIVDV 264
            L + V
Sbjct: 164 PLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 45/161 (27%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G++VT  C             WF N  L +  +                  L I +   E
Sbjct: 19  GENVTLTCNGNNFFE-VSSTKWFHNGSLSEETNS----------------SLNIVNAKFE 61

Query: 239 DEGEFTCRVANELGE-----VVTSACLIVD-----VVKGKDLT----------------- 271
           D GE+ C+             V S  L++      V++G+ L                  
Sbjct: 62  DSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYY 121

Query: 272 SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
            DG   +        ++I + T +DSG Y            
Sbjct: 122 KDGEA-LKYWYENHNISITNATVEDSGTYYCTGKVWQLDYE 161

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 80  GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           G  +  +C        +   + KDG+         ++   +   + I+  T+ED+G Y  
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYKDGEA--------LKYWYENHNISITNATVEDSGTYYC 151

Query: 139 KVENNYGSVE-ATARLEIMDP 158
             +      E     + ++  
Sbjct: 152 TGKVWQLDYESEPLNITVIKA 172

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 84.0 bits (208), Expect = 2e-20
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-ATPNARVTIREKEDLRFLE 124
           P     P N+   +  T   +C  TG P P  SW K+G      + R TI+E+  L+   
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ--- 65

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
           I  + + D G YT    ++ G    +A L++ +
Sbjct: 66  IKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 65.5 bits (160), Expect = 7e-14
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P +L G  N       +   +C+    P     ISW +            P   +  +  
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKATGDPL--PVISWLKEGFTFPGRD---PRATIQEQGT 63

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           L I       +   D G +TC   +  GE   SA L V
Sbjct: 64  LQIKN-----LRISDTGTYTCVATSSSGETSWSAVLDV 96

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
           G            T+     L I+++   D+G Y    ++  G  S  A + V  
Sbjct: 46  GFTFPGRDP--RATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 87.8 bits (217), Expect = 3e-20
 Identities = 36/287 (12%), Positives = 74/287 (25%), Gaps = 72/287 (25%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
             T    CS +        W +  +   P      ++      L ++ +T  D G Y   
Sbjct: 15  SSTFVLTCSGSAP----VVWERMSQE-PPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCT 69

Query: 140 VENNYGSVEATAR---LEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
             ++ G      +   + + DP               L   +   +T  C+V        
Sbjct: 70  HNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLT--EITEITIPCRVTDPQLV-- 125

Query: 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256
            ++            D+   V  D +                ++  + C+      EV +
Sbjct: 126 -VTLHEK------KGDVALPVPYDHQRGFSG---------IFEDRSYICKTTIGDREVDS 169

Query: 257 SACLIV----------------DVVKGKDLT----------------------------S 272
            A  +                  V +G+++T                             
Sbjct: 170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229

Query: 273 DGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
              L  +     S+L I     +DSG Y  +V+          ++ +
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 82.4 bits (203), Expect = 3e-18
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 16/186 (8%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
              +   C VT      T   K G  A P               +     + +   Y  K
Sbjct: 110 ITEITIPCRVTDPQLVVTLHEKKGDVALPV----------PYDHQRGFSGIFEDRSYICK 159

Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS 199
                  V++ A       R  +S   V           G+++T  C V        +  
Sbjct: 160 TTIGDREVDSDAYYVY---RLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV--VNFE 214

Query: 200 WFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC 259
           W    +      +   +  +D     + + L IP    ED G +TC V   + +      
Sbjct: 215 WTYPRKESGRLVEPVTDFLLDM-PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKA 273

Query: 260 LIVDVV 265
           + + VV
Sbjct: 274 INITVV 279

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
           SS          +   G+ +   C V G       W+   K +            D+ + 
Sbjct: 180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH 239

Query: 123 ----LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
               L I    LED+G YT  V  +    +    + I
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 82.4 bits (204), Expect = 5e-20
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
            RF     +     G     +C ++   AP   W        P  + ++R++  +  L +
Sbjct: 9   VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVV 67

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
             +  +D+G Y+       G    +A L +    +  S
Sbjct: 68  RNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGPS 101

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
            +    L++L   +G + T  C +  V      + W   N +++        ++ +    
Sbjct: 9   VRFQEALKDLEVLEGGAATLRCVLSSVAA---PVKWCYGNNVLRPGDKYS--LRQEGA-- 61

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
             +  L + ++ P+D G ++C      G+  TSA L V 
Sbjct: 62  --MLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 22/90 (24%)

Query: 240 EGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDI 292
           EG      C +++    V           K       L    + ++   G    L + ++
Sbjct: 22  EGGAATLRCVLSSVAAPV-----------KWCYGNNVLRPGDKYSLRQEGAMLELVVRNL 70

Query: 293 TGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
              DSG+Y        G  +  A++ V   
Sbjct: 71  RPQDSGRYSCSF----GDQTTSATLTVTAL 96

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 84.5 bits (209), Expect = 6e-20
 Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 38/187 (20%)

Query: 80  GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            D+V   C     P   +  W  +G     + + +             +    D+G YT 
Sbjct: 19  EDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSY----------RFKANNNDSGEYTC 68

Query: 139 KVENNYGSVEATARLEIM-DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
           +      S      L ++ +   + +              +G+++   C      P    
Sbjct: 69  QTGQTSLS--DPVHLTVLFEWLVLQTPHLEFQ--------EGETIMLRCHSWKDKPL-VK 117

Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
           +++F+N +  K                       IP       G++ C          +S
Sbjct: 118 VTFFQNGKSQKFSHLD--------------PTFSIPQANHSHSGDYHCTGNIGYTL-FSS 162

Query: 258 ACLIVDV 264
             + + V
Sbjct: 163 KPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 59.4 bits (144), Expect = 5e-11
 Identities = 36/186 (19%), Positives = 52/186 (27%), Gaps = 58/186 (31%)

Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
           P+A++   P  +N L+       DSVT  CQ    P +D  I WF N  LI   +     
Sbjct: 3   PKAVLKLEPPWINVLQ------EDSVTLTCQGARSPESDS-IQWFHNGNLIPTHTQ---- 51

Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL------------------------- 251
                                 D GE+TC+                              
Sbjct: 52  ------------PSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQE 99

Query: 252 GEVVTSACLIVDVVKGKDLTS-----DGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSN 306
           GE +   C      K K L       +G+ +          +I       SG Y    + 
Sbjct: 100 GETIMLRC---HSWKDKPLVKVTFFQNGK-SQKFSHLDPTFSIPQANHSHSGDYHCTGNI 155

Query: 307 QHGSDS 312
            +   S
Sbjct: 156 GYTLFS 161

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 84.4 bits (208), Expect = 1e-19
 Identities = 30/212 (14%), Positives = 56/212 (26%), Gaps = 43/212 (20%)

Query: 79  LGDTVRFQCSVTGQPAPWT----SWSKDGKPATPNARVTIREKEDLRF------------ 122
            G+T    C  T  P         W           +V I    D  +            
Sbjct: 14  KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH 73

Query: 123 ------------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNG 170
                       + ++ + L D G Y  KV+   G       L ++        P     
Sbjct: 74  FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK------PSGTRC 127

Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
             +     G+    +C+ +          W + +    + +    E+            +
Sbjct: 128 FVDGSEEIGNDFKLKCEPKEGSLPLQ-FEWQKLSDSQTMPTPWLAEMTSPV--------I 178

Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            + +   E  G ++C V N +G       L V
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 69.3 bits (169), Expect = 4e-14
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           P       +   ++G+  + +C    G       W K     T            +  + 
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--IS 179

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
           +   + E +G Y+  V+N  GS +   RL+++ P
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 68.9 bits (168), Expect = 5e-14
 Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 55/196 (28%)

Query: 179 GDSVTFECQVQ--VVPPNDHDISWFRNNR---------LIKLDSDMKPEVQVDSKENLVI 227
           G++    C+           DI W  +           ++     +      D K  +  
Sbjct: 15  GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74

Query: 228 AR---------LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVV 265
                      + + ++   D G + C+V    G       L V                
Sbjct: 75  TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEE 134

Query: 266 KGKDLT------------------SDGRLNI----ITVGGTSVLTIEDITGDDSGKYQVH 303
            G D                          +    +    + V+++++ + + SG Y   
Sbjct: 135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCT 194

Query: 304 VSNQHGSDSCYASVAV 319
           V N+ GSD C   + V
Sbjct: 195 VQNRVGSDQCMLRLDV 210

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 84.1 bits (208), Expect = 2e-19
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 54  NSAIRTRRLTSSPRFYA----VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--AT 107
            +A  +  +      YA     P       G+ V   C V   P+   SW +DG+   ++
Sbjct: 3   YAAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSS 62

Query: 108 PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
             + + I       +LE++  +  D G Y     N  G       L   D  +  S  +V
Sbjct: 63  NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV 122

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 19/129 (14%)

Query: 134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPP 193
             Y                 ++  P A+ +               G+ V   C+V   P 
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQGPVAVYTWE-------------GNQVNITCEVFAYPS 47

Query: 194 NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253
               ISWFR+ +L+   +    ++          + L++      D G + C   N +G+
Sbjct: 48  AT--ISWFRDGQLLPSSNYSNIKIYNTPSA----SYLEVTPDSENDFGNYNCTAVNRIGQ 101

Query: 254 VVTSACLIV 262
                 L+ 
Sbjct: 102 ESLEFILVQ 110

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 267 GKDLTSDG--RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           G+ L S     + I      S L +   + +D G Y     N+ G +S    +     
Sbjct: 56  GQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
                   ++    G+ V  +C ++    P   W KD K    + +  +  +  +  L I
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
              +L+DAG YT +VE +  +       +   P
Sbjct: 68  RGASLKDAGEYTCEVEASKSTASLHVEEKASGP 100

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 68.5 bits (168), Expect = 8e-15
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
             ++  LE+     G+ V   C++         + W ++ + I+          V  +  
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGT---PVHWLKDRKAIRKSQK----YDVVCEGT 61

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
           +  A L I     +D GE+TC V         +A L V+ 
Sbjct: 62  M--AMLVIRGASLKDAGEYTCEVEASKS----TASLHVEE 95

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIE 290
           V P ++ E  C ++     V                 K +    + +++  G  ++L I 
Sbjct: 20  VAPGEDVELRCELSRAGTPV-----------HWLKDRKAIRKSQKYDVVCEGTMAMLVIR 68

Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
             +  D+G+Y   V     +    AS+ VE +
Sbjct: 69  GASLKDAGEYTCEVEASKST----ASLHVEEK 96

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 82.6 bits (204), Expect = 3e-19
 Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 36/186 (19%)

Query: 80  GDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            D+V  +C     P    T W  +    +  A              I   T+ D+G Y  
Sbjct: 22  KDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS----------YFIDAATVNDSGEYRC 71

Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
           +   +  S     +LE+     ++  P+ +         + D +   C         H +
Sbjct: 72  QTNLSTLS--DPVQLEVHIGWLLLQAPRWVFK-------EEDPIHLRCHSWKNTAL-HKV 121

Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
           ++ +N +  K                   +   IP    +D G + CR        V+S 
Sbjct: 122 TYLQNGKDRKYFHH--------------NSDFHIPKATLKDSGSYFCRGLVGSKN-VSSE 166

Query: 259 CLIVDV 264
            + + +
Sbjct: 167 TVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 58/186 (31%)

Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
           P+A++   P+  + LE       DSVT +CQ    P  D+   WF N  LI   +     
Sbjct: 6   PKAVVFLEPQWYSVLE------KDSVTLKCQGAYSPE-DNSTQWFHNESLISSQAS---- 54

Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL------------------------- 251
                          I      D GE+ C+                              
Sbjct: 55  ------------SYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE 102

Query: 252 GEVVTSACLIVDVVKGKDLTS-----DGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSN 306
            + +   C      K   L       +G+ +       S   I   T  DSG Y      
Sbjct: 103 EDPIHLRC---HSWKNTALHKVTYLQNGK-DRKYFHHNSDFHIPKATLKDSGSYFCRGLV 158

Query: 307 QHGSDS 312
              + S
Sbjct: 159 GSKNVS 164

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 82.7 bits (204), Expect = 3e-19
 Identities = 26/200 (13%), Positives = 52/200 (26%), Gaps = 49/200 (24%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----------------- 122
           GDTV   C+ + + +    W    +      + +   K   +                  
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
           L I  + +ED+  Y  +VE+    V+        +    +                G S+
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL--------------QGQSL 115

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
           T   +          +                               L +  +  +D G 
Sbjct: 116 TLTLESPPGSS--PSVQCRSPRGKNIQGGK----------------TLSVSQLELQDSGT 157

Query: 243 FTCRVANELGEVVTSACLIV 262
           +TC V     +V     ++V
Sbjct: 158 WTCTVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 72.7 bits (178), Expect = 2e-15
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 31/172 (18%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI----------- 227
           GD+V   C             W  +N++  L +      +  SK N              
Sbjct: 10  GDTVELTCTASQKKS--IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67

Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI-----VDVVKGKDLT----SDG---- 274
             L I ++  ED   + C V ++  EV      +       +++G+ LT    S      
Sbjct: 68  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 127

Query: 275 -----RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
                      + G   L++  +   DSG +   V            + V  
Sbjct: 128 SVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 10/86 (11%)

Query: 71  VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
              +     G ++          +P               +           L +S++ L
Sbjct: 103 ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLEL 152

Query: 131 EDAGLYTIKVENNYGSVEATARLEIM 156
           +D+G +T  V  N   VE    + ++
Sbjct: 153 QDSGTWTCTVLQNQKKVEFKIDIVVL 178

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 80.8 bits (199), Expect = 6e-19
 Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 13/120 (10%)

Query: 54  NSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT 113
           +S+    R +    F   P ++   +G +V   C   G P P   W  +G+         
Sbjct: 10  HSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69

Query: 114 IREKEDLRF-------------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA 160
                  R              + I  +  ED G Y  +  N+      T    +   RA
Sbjct: 70  WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRA 129

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 70.8 bits (173), Expect = 3e-15
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 11/112 (9%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPE----- 216
                +    + +   G SV   C+    P P   +I W+   +          +     
Sbjct: 20  HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVP---EIQWWFEGQGPNDICSQLWDGARLD 76

Query: 217 --VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
                 +      + + I  +  ED G + CR +N+      +    V  V+
Sbjct: 77  RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVR 128

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 83.0 bits (204), Expect = 1e-18
 Identities = 33/239 (13%), Positives = 56/239 (23%), Gaps = 56/239 (23%)

Query: 79  LGDTVRFQCSVT---GQPAPWTSWSKDGKPATPNARVTIREKEDLRF------------- 122
            G TV   CS         P  SW K   P                              
Sbjct: 16  AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 75

Query: 123 ----------------LEISEVTLEDAGLYTIKVEN-----NYGSVEATARLEIMDPRAI 161
                           L ++ V  +D G Y  +V        +G    +  L++      
Sbjct: 76  GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP- 134

Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI-------------- 207
            S    ++  E ++  +G+ +T  C        +  ++W+                    
Sbjct: 135 -SNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN--VTWYTGPTFFENYETGTYQPLANK 191

Query: 208 -KLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
            +                     L I      D G   C +A   GE+       +  V
Sbjct: 192 NQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 62.2 bits (150), Expect = 2e-11
 Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 21/115 (18%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
           S+    +       D G+ +   C  T       +W             T +   +    
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194

Query: 123 --------------------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
                               L I    + DAG    ++    G ++A     I+ 
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 85.7 bits (212), Expect = 1e-18
 Identities = 25/90 (27%), Positives = 40/90 (44%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           PRF   P+      G +  F C V     P  +W KD +    + +   R   +   L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           + V  +D G YT++ +N+YG+ E    L +
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 6/109 (5%)

Query: 211 SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDL 270
           S           +   I +     V       F CRV      VVT           ++L
Sbjct: 470 SIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHK------DDREL 523

Query: 271 TSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
               +      G    LTI  + GDD G+Y V   N +G+      + V
Sbjct: 524 KQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
            +F     N+    G T   +C ++        W K  +      R ++R+      L+I
Sbjct: 20  IKFTEGLRNEEATEGATAVLRCELSKMAPV--EWWKGHETLRDGDRHSLRQDGARCELQI 77

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
             +  EDAG Y        G    +A L +    +  S
Sbjct: 78  RGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 19/123 (15%)

Query: 142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF 201
           ++  S   +A L +       +       L N    +G +    C++  + P    + W+
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEG-----LRNEEATEGATAVLRCELSKMAP----VEWW 52

Query: 202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261
           + +  ++        ++ D         L+I  +  ED GE+ C      G+  TSA L 
Sbjct: 53  KGHETLRDGDRHS--LRQDGA----RCELQIRGLVAEDAGEYLCMC----GKERTSAMLT 102

Query: 262 VDV 264
           V  
Sbjct: 103 VRA 105

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
            + L    R ++   G    L I  +  +D+G+Y        G +   A + V   
Sbjct: 55  HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 82.6 bits (203), Expect = 2e-18
 Identities = 33/244 (13%), Positives = 65/244 (26%), Gaps = 51/244 (20%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSVT---GQPAPWTSWSKDGKPATPNARVTI--- 114
           R    P            +G++V   C V     +      W         +  V     
Sbjct: 1   RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60

Query: 115 -------REKEDLRF----------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
                  R +               L + +V   D G+YT ++     S+     +E+  
Sbjct: 61  NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV 120

Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDM--- 213
                   +V           GD+    C +Q         ++W  ++     +  +   
Sbjct: 121 LPEEPRDLRVRV---------GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSY 171

Query: 214 ---------------KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
                          +  V +    +     +K+  V   D+G +TC +     E   + 
Sbjct: 172 DSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTI 231

Query: 259 CLIV 262
            L V
Sbjct: 232 VLHV 235

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 15/103 (14%)

Query: 179 GDSVTFECQVQVVPPNDH-DISWFRN--------------NRLIKLDSDMKPEVQVDSKE 223
           G+SV   C VQ         + W  +              + L       +    +    
Sbjct: 20  GESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDT 79

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
                 L +  V   DEG +TC +  +   +V    + + V+ 
Sbjct: 80  FHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP 122

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 27/121 (22%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWT---SWSKDGKPATPNARV--------TIREKEDL 120
           P +    +GDT + +CS+           +W       T    V        + + +   
Sbjct: 125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLG 184

Query: 121 RF----------------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR 164
           RF                +++  V   D G+YT  +         T  L ++      + 
Sbjct: 185 RFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTI 244

Query: 165 P 165
            
Sbjct: 245 S 245

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 78.2 bits (193), Expect = 2e-18
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
                         G++  F+C ++    +    W+  GK    ++R     +     L 
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
           + E    DAG     V      + + A L + +     S
Sbjct: 69  VREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPSS 103

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 72.4 bits (178), Expect = 3e-16
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
             +   L+ +   +G+S +FEC +     +D    W    + +   S      Q   +  
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASD-PAMWTVGGKTVGSSSR----FQATRQGR 63

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG 267
                L +    P D GE    V      + + A LIV    G
Sbjct: 64  --KYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSG 100

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           GK + S  R      G   +L + +    D+G+    V       +  AS+ V  R
Sbjct: 47  GKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRER 98

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 84.7 bits (208), Expect = 3e-18
 Identities = 41/306 (13%), Positives = 74/306 (24%), Gaps = 65/306 (21%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKEDLRF--LEISEVTLEDAGLY 136
            +  +F C  +         +  GK A     R+ +  ++      + I+ +  EDAG Y
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305

Query: 137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
                ++    E +          +     +      ++   G SV   C          
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLF--VNEESTIPRSPTVVKGVAGSSVAVLCPYNRKES-KS 362

Query: 197 DISWFRNNRLIKLDSDM----KPEVQVDSKENLVIAR--------LKIPHVYPEDEGEFT 244
              W            +    +  V+   +  L +          + +  +   D G + 
Sbjct: 363 IKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422

Query: 245 CRVAN---------------------------ELGEVVTSACLIVDVVKG---------- 267
           C                                LGE +   C                  
Sbjct: 423 CLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN 482

Query: 268 -------KDLTSDGRLNIIT--VGGTSVLTIEDITGDDSGKYQVHVSNQHGSD-SCYASV 317
                         +  +          LT+  +T  D G Y   V   H    +    V
Sbjct: 483 TGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542

Query: 318 AVEGRK 323
           AVE RK
Sbjct: 543 AVEERK 548

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 72.7 bits (177), Expect = 2e-14
 Identities = 35/312 (11%), Positives = 85/312 (27%), Gaps = 82/312 (26%)

Query: 80  GDTVRFQCSV---TGQPAPWTSWSKDGKP--------------ATPNARVTIREKEDLRF 122
           G++V   C     +        W + G                +    R  +    +   
Sbjct: 15  GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74

Query: 123 --LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
             + I++++ +D+G Y   +  N   +     LE+     +++  KV             
Sbjct: 75  FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLG------R 128

Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI---------ARLK 231
           +VT  C  +          + +      L  D    V  +    + +           + 
Sbjct: 129 TVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVV 188

Query: 232 IPHVYPEDEGEFTCRVANELGEVVTSA--------------------------------- 258
           I  +   D G++ C+  ++      +A                                 
Sbjct: 189 INQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANV 248

Query: 259 ----C---------LIVDVVKGKDLTSDGRLNIITVG--GTSVLTIEDITGDDSGKYQVH 303
               C         ++V+ +  +    +GR+ +      G+  + I  +  +D+G+Y   
Sbjct: 249 AKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCG 308

Query: 304 VSNQHGSDSCYA 315
             +         
Sbjct: 309 AHSDGQLQEGSP 320

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 72.7 bits (177), Expect = 2e-14
 Identities = 47/341 (13%), Positives = 95/341 (27%), Gaps = 84/341 (24%)

Query: 54  NSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATP--- 108
            S   +  ++  P           DLG TV   C    + A    + + + G        
Sbjct: 101 LSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVID 160

Query: 109 -----------NARVTIREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
                        R+ I+    L F + I+++ L DAG Y  +  ++  S +  A L+++
Sbjct: 161 SSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220

Query: 157 DPRAIISRPKVLNGL---ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM 213
            P   +    +   +     L     +   F C+         D+         K     
Sbjct: 221 KPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGEN--CDVVVNTLG---KRAPAF 275

Query: 214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI------------ 261
           +  + ++ ++      + I  +  ED G + C   ++      S                
Sbjct: 276 EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIP 335

Query: 262 -----VDVVKGKDLT----------------------------------------SDGRL 276
                V  V G  +                                          +GRL
Sbjct: 336 RSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL 395

Query: 277 NII--TVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYA 315
           +++     GT  + +  +T  D+G Y    +      +   
Sbjct: 396 SLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE 436

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 28/225 (12%), Positives = 55/225 (24%), Gaps = 70/225 (31%)

Query: 159 RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLD------- 210
           ++ I  P+ +N +E      G+SV+  C       N      W R               
Sbjct: 1   KSPIFGPEEVNSVE------GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEG 54

Query: 211 ---SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA--------- 258
              S       + +        + I  +  +D G + C +      +             
Sbjct: 55  YVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPG 114

Query: 259 -----------------------------------------CLIVDVVKGKDLTSDGRLN 277
                                                     L++D     +    GR+ 
Sbjct: 115 LLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR 174

Query: 278 IITVG---GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           +   G       + I  +   D+G+Y     +   S+   A + V
Sbjct: 175 LDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV 219

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 77.8 bits (192), Expect = 3e-18
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
            RF      K    G T   QC ++        W K  +      R ++++      L+I
Sbjct: 9   ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
            ++++ DAG Y+       G    +A L +    A  +  
Sbjct: 67  HDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEG 102

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 14/101 (13%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
            +    L+     +G + T +C++  V P    + W +    ++        ++ D    
Sbjct: 9   ARFTQDLKTKEASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYS--LKQDGT-- 60

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
                L+I  +   D GE++C      G+  TSA L V  +
Sbjct: 61  --RCELQIHDLSVADAGEYSCMC----GQERTSATLTVRAL 95

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
            + L   GR ++   G    L I D++  D+G+Y        G +   A++ V   
Sbjct: 44  PETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC----GQERTSATLTVRAL 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 77.1 bits (190), Expect = 4e-18
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
                      + +   GD ++ +C +        +W +DG     + R  I        
Sbjct: 7   AQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG----EE 61

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           +E+ +    D+GLY     +  GS      + +
Sbjct: 62  VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 19/109 (17%)

Query: 154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM 213
           E   P  +    + L          GD +   C+++    +   I+W R+   +   +  
Sbjct: 5   EQAQPWGVPVEVESLLVHP------GDLLQLRCRLRDDVQS---INWLRDGVQLVESNRT 55

Query: 214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           +          +    +++    P D G + C  ++  G   T   + V
Sbjct: 56  R----------ITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           G  L    R  I        + + D    DSG Y    S+  GSD+ Y SV V
Sbjct: 46  GVQLVESNRTRI----TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 77.9 bits (192), Expect = 4e-18
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 85  FQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----LEISEVTLEDAGLYTIKV 140
            +  V G P P   W  +G+P   +  + +   ++       L  ++ T  + G YT+  
Sbjct: 25  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 84

Query: 141 ENNYGSVEATARLEIMDPRAIISRPK 166
           +N  G+   T     +     +    
Sbjct: 85  KNPLGTANQTINGHFLKEPFPVDEVS 110

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 181 SVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
               E  V+  P P    + W  N + ++    +   V+   +  +    L        +
Sbjct: 22  EHCIEFVVRGNPPPT---LHWLHNGQPLRESKIIH--VEYYQEGEISEGCLLFNKPTHYN 76

Query: 240 EGEFTCRVANELGEVVTSACLIVDV 264
            G +T    N LG    +       
Sbjct: 77  NGNYTLIAKNPLGTANQTINGHFLK 101

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 267 GKDLTSDGRLNIITVGGTSV----LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           G+ L     +++       +    L     T  ++G Y +   N  G+ +   +      
Sbjct: 43  GQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 77.1 bits (190), Expect = 5e-18
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
              +    P       G TV   C V  QP+P   W KDG P                 L
Sbjct: 9   EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV---------L 59

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
            + E+  +D G Y+    ++    + +  + I
Sbjct: 60  ILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 68.2 bits (167), Expect = 9e-15
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 17/105 (16%)

Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
           +   +++   E      G +VT  C+V   P     I W ++   + L            
Sbjct: 8   LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQ--IHWMKDGVPLPLPPS--------- 56

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
                   L +P + P+D+G ++C   +       S  + + +++
Sbjct: 57  ------PVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 77.1 bits (190), Expect = 6e-18
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-----EKEDLRFLEISEVTLEDAG 134
                   +V G P P   W  +G     +  +  +       E    L++   T  + G
Sbjct: 16  DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75

Query: 135 LYTIKVENNYGSVEATARLEIMDP 158
            YT+  +N YG  E       M  
Sbjct: 76  DYTLIAKNEYGKDEKQISAHFMGW 99

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 60.1 bits (146), Expect = 7e-12
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 179 GDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
                    V+  P P    + WF N  ++     +  ++ V +        L++ +   
Sbjct: 16  DHHWCIPFTVKGNPKPA---LQWFYNGAILNESKYICTKIHVTN-HTEYHGCLQLDNPTH 71

Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
            + G++T    NE G+         
Sbjct: 72  MNNGDYTLIAKNEYGKDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 267 GKDLTSDGRLNIITVGGT-----SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
           G  L     +               L +++ T  ++G Y +   N++G D    S    G
Sbjct: 39  GAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

Query: 322 R 322
            
Sbjct: 99  W 99

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 76.6 bits (189), Expect = 8e-18
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
             F     N   +   T  F C     PA   +W K       + +    ++     L I
Sbjct: 9   NCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
           S +   D+  YT  +    G  ++ A+L +   R+  S
Sbjct: 68  SALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGPS 101

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 13/98 (13%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
                 L NL+  +  +  F C+ +        ++W +    ++       +   +    
Sbjct: 9   NCFTEELTNLQVEEKGTAVFTCKTEHPAAT---VTWRKGLLELRASGKH--QPSQEGL-- 61

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
               RL I  +   D   +TC +    G+  + A L+V
Sbjct: 62  --TLRLTISALEKADSDTYTCDI----GQAQSRAQLLV 93

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 19/94 (20%)

Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIE 290
           V  +    FTC+  +    V                  +L + G+      G T  LTI 
Sbjct: 20  VEEKGTAVFTCKTEHPAATV-----------TWRKGLLELRASGKHQPSQEGLTLRLTIS 68

Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI 324
            +   DS  Y   +    G     A + V+GR+ 
Sbjct: 69  ALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
                  +     +G+T  F+  ++ +P     W   G+P   +    I E      L +
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
               L   G  + +  N     ++ A L++
Sbjct: 65  HNCQLGMTGEVSFQAAN----TKSAANLKV 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 13/98 (13%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
            +V   L  +    G++  FE ++     +     W    + +    D +  +  D K  
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELSEPDVH---GQWKLKGQPLAASPDCE--IIEDGK-- 58

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                L + +      GE + +         ++A L V
Sbjct: 59  --KHILILHNCQLGMTGEVSFQA----ANTKSAANLKV 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 16/77 (20%)

Query: 240 EGE---FTCRVANELGEVVTSACLIVDVV---KGKDLTSDGRLNIITVGGTSVLTIEDIT 293
            GE   F   ++             V      KG+ L +     II  G   +L + +  
Sbjct: 19  VGETAHFEIELSEPD----------VHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQ 68

Query: 294 GDDSGKYQVHVSNQHGS 310
              +G+     +N   +
Sbjct: 69  LGMTGEVSFQAANTKSA 85

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 36/186 (19%)

Query: 80  GDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            D+V  +C     P    T W  +    +  A              I   T++D+G Y  
Sbjct: 22  KDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS----------YFIDAATVDDSGEYRC 71

Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
           + + +  S     +LE+     ++  P+ +         + D +   C         H +
Sbjct: 72  QTQLSTLS--DPVQLEVHIGWLLLQAPRWVFK-------EEDPIHLRCHSWKNTAL-HKV 121

Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
           ++ +N +  K                   +   IP    +D G + CR        V+S 
Sbjct: 122 TYLQNGKGRKYFHHN--------------SDFYIPKATLKDSGSYFCRGLVGSKN-VSSE 166

Query: 259 CLIVDV 264
            + + +
Sbjct: 167 TVQITI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 28/161 (17%), Positives = 41/161 (25%), Gaps = 45/161 (27%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            DSVT +CQ    P +     WF N  LI   +                    I     +
Sbjct: 22  KDSVTLKCQGAYSPED-QSTQWFHNESLISSQAS----------------SYFIDAATVD 64

Query: 239 DEGEFTCRVANELGE-----VVTSACLIVD-----VVKGKDLT----------------- 271
           D GE+ C+             V    L++        +   +                  
Sbjct: 65  DSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124

Query: 272 SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
            +G+         S   I   T  DSG Y         + S
Sbjct: 125 QNGK-GRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVS 164

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 75.1 bits (185), Expect = 3e-17
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
             V   LE+     G+ V  EC+V     N   + WF+N   I      +  ++V+ K  
Sbjct: 8   IMVTKQLEDTTAYCGERVELECEVSEDDAN---VKWFKNGEEIIPGPKSRYRIRVEGK-- 62

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
                L I      D  E++           +SA L VD+
Sbjct: 63  --KHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDL 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 69.3 bits (170), Expect = 4e-15
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDL 120
           +S         +     G+ V  +C V+        W K+G+     P +R  IR +   
Sbjct: 5   SSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63

Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
             L I   T  DA  Y++         +++A+L +       S
Sbjct: 64  HILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKSGPSS 102

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 24/92 (26%)

Query: 240 EGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTS--DGRLNIITVGGTSVLTIE 290
            GE     C V+ +   V           K    G+++      R  I   G   +L IE
Sbjct: 21  CGERVELECEVSEDDANV-----------KWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 69

Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
             T  D+ +Y V  +    S    A ++V+ +
Sbjct: 70  GATKADAAEYSVMTTGGQSS----AKLSVDLK 97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 74.0 bits (182), Expect = 6e-17
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 63  TSSPRFY-AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
           +S   F   +      D G  VRF   +   P     W K+G+   P+ +     K   R
Sbjct: 5   SSGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63

Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
            L I+   + D   Y +      G  + +  L +   
Sbjct: 64  ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSG 96

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 60.1 bits (146), Expect = 7e-12
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 14/101 (13%)

Query: 163 SRPKVLNGLE-NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
           S       L+   +   G  V F  ++        ++ W++N + I+  +        + 
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVELADPKL---EVKWYKNGQEIRPSTK----YIFEH 58

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           K       L I +    D+ E+        G+   S  L V
Sbjct: 59  KGCQ--RILFINNCQMTDDSEYYVTA----GDEKCSTELFV 93

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 19/90 (21%)

Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIE 290
           V       F   +A+   EV           K    G+++    +      G   +L I 
Sbjct: 20  VDKGGRVRFVVELADPKLEV-----------KWYKNGQEIRPSTKYIFEHKGCQRILFIN 68

Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
           +    D  +Y V      G + C   + V 
Sbjct: 69  NCQMTDDSEYYVTA----GDEKCSTELFVR 94

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 73.9 bits (182), Expect = 8e-17
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 9/99 (9%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
             ++  LE+ +   GD V    +V         + W +N   +  +   K   +      
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQ---VMWMKNGVELTREDSFKARYRFKKDGK 65

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
                L    V  ED G +              A LIV+
Sbjct: 66  R--HILIFSDVVQEDRGRYQVITNGG----QCEAELIVE 98

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN----ARVTIREKEDLR 121
                   ++   +GD V     V+        W K+G   T      AR   ++     
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR 159
            L  S+V  ED G Y +         +  A L + + +
Sbjct: 68  ILIFSDVVQEDRGRYQVITNGG----QCEAELIVEEKQ 101

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 23/98 (23%)

Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSD----GRLNIITVGGTS 285
            V+  D  E    V+ E  +V                G +LT +     R      G   
Sbjct: 19  QVFVGDRVEMAVEVSEEGAQV-----------MWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 286 VLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
           +L   D+  +D G+YQV  +       C A + VE ++
Sbjct: 68  ILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 73.5 bits (181), Expect = 9e-17
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
           S  +    P ++    G T+  QC   G P P   W K+  P T   +         +  
Sbjct: 2   SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLY 52

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
            +  V LE  G Y   V N+  S ++     I+D 
Sbjct: 53  MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 17/100 (17%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
           S+ ++     + +   G ++  +C     P       WF+N   +  ++           
Sbjct: 2   SKLQICVEPTSQKLMPGSTLVLQCVAVGSPI--PHYQWFKNELPLTHETKKL-------- 51

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                    +P+V  E +G + C V N+     +    I+
Sbjct: 52  -------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 279 ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS-DSCYASVAVE 320
           +T     +  +  +  +  G Y  HV N   S DS    + ++
Sbjct: 44  LTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 76.5 bits (187), Expect = 1e-16
 Identities = 30/199 (15%), Positives = 51/199 (25%), Gaps = 41/199 (20%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
             +V   C      A   +W KDGK                +   +     +  G+Y  K
Sbjct: 18  DGSVLLTCDA---EAKNITWFKDGKMIGFLTEDK-------KKWNLGSNAKDPRGMYQCK 67

Query: 140 VENNYGS------------VEATARLEIMDPRAIISRPKVLNGLENLR---------CCD 178
              N                      +  D +   ++    +G E +             
Sbjct: 68  GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G +V   C          +I W  N++ I  D D K       +++L +          E
Sbjct: 128 GTTVILTCPQYPGS----EILWQHNDKNIGGDEDDK--NIGSDEDHLSL----KEFSELE 177

Query: 239 DEGEFTCRVANELGEVVTS 257
             G + C       E    
Sbjct: 178 QSGYYVCYPRGSKPEDANF 196

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 12/108 (11%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKDGK---PATPNARVTIREK 117
           S   F   P      +G+ + F   V  +     P   W K       +     + ++E 
Sbjct: 6   SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65

Query: 118 EDLRF------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR 159
            +         ++I +     AG Y  +V         +  LE+ +  
Sbjct: 66  FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRL---IKLDSDMKPEVQ 218
           S    +   +      G+ +TF  +V+         I WF+   +    K    ++ +  
Sbjct: 6   SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65

Query: 219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
            +    +    ++I        G + C V  +      S  L V    G  
Sbjct: 66  FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 12/57 (21%), Positives = 20/57 (35%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
           GK L         +   T  + I     + +G Y+  V+ +   DSC   + V    
Sbjct: 57  GKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 74.2 bits (182), Expect = 1e-16
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 145 GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN 204
           GS  ++  L +  P  IIS  +  + L       G+    +C ++  PP D  I+W    
Sbjct: 1   GSSGSSGTLTVNGP-PIISSTQTQHALH------GEKGQIKCFIRSTPPPDR-IAWSWKE 52

Query: 205 RLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG-EFTCRVANELGEVVTSACLIV 262
            +++  +  +  V+  S E  VI+ L I ++   D    + C   N  G       L  
Sbjct: 53  NVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKP--ATPNARVTIREKEDLRF 122
           P   +    +    G+  + +C +   P P   +WS       +  + R T+        
Sbjct: 15  PII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73

Query: 123 ----LEISEVTLED-AGLYTIKVENNYGSVEATARLEI 155
               L IS +   D   +Y     N++GS     RL+ 
Sbjct: 74  VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 269 DLTSDGRLNIITV----GGTSVLTIEDIT-GDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
           +  + GR  + T+    G  S LTI +I   D    Y     N  GSD+    +  +G +
Sbjct: 56  ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

Query: 324 I 324
           +
Sbjct: 116 M 116

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 63  TSSPRFYAVP---HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED 119
           +S P     P    +      + V   C ++    P  +W KDG+    +  + ++    
Sbjct: 5   SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGR 63

Query: 120 LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
              L + E  ++D+G +  + E     V A   + + DP    S
Sbjct: 64  KHRLILPEAKVQDSGEFECRTEG----VSAFFGVTVQDPSGPSS 103

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.8 bits (153), Expect = 9e-13
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 16/107 (14%)

Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
               I  P+      +L     + V   C++  V       +W+++ + ++    +   V
Sbjct: 7   GPVHILSPQ---DKVSLTFTTSERVVLTCELSRVDF---PATWYKDGQKVEESELLV--V 58

Query: 218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
           ++D +      RL +P    +D GEF CR       V     + V  
Sbjct: 59  KMDGR----KHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQD 97

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 22/88 (25%)

Query: 240 EGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDI 292
             E    TC ++                      G+ +     L +   G    L + + 
Sbjct: 24  TSERVVLTCELSRVDFPA-----------TWYKDGQKVEESELLVVKMDGRKHRLILPEA 72

Query: 293 TGDDSGKYQVHVSNQHGSDSCYASVAVE 320
              DSG+++          S +  V V+
Sbjct: 73  KVQDSGEFECRT----EGVSAFFGVTVQ 96

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
             F   P +     G    F+            W + G   + + +  +  +     L +
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETERAGVK-VRWQRGGSDISASNKYGLATEGTRHTLTV 67

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
            EV   D G Y +      GS +    L++
Sbjct: 68  REVGPADQGSYAVIA----GSSKVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 13/98 (13%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
                   ++    G    FE + +        + W R    I   +       + ++  
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETERAGV---KVRWQRGGSDISASNK----YGLATEGT 61

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                L +  V P D+G +        G       L V
Sbjct: 62  R--HTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 22/88 (25%)

Query: 240 EGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDI 292
            G    F         +V           +    G D+++  +  + T G    LT+ ++
Sbjct: 22  AGSPAVFEAETERAGVKV-----------RWQRGGSDISASNKYGLATEGTRHTLTVREV 70

Query: 293 TGDDSGKYQVHVSNQHGSDSCYASVAVE 320
              D G Y V      GS      + V 
Sbjct: 71  GPADQGSYAVIA----GSSKVKFDLKVI 94

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 73.8 bits (181), Expect = 7e-16
 Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 43/195 (22%)

Query: 79  LGDTVRFQC--SVTGQPAPWTSWSKDGKPAT----PNARVTIREKEDLRF-----LEISE 127
           LG  +                 W K             + T +EK+  +      L+I  
Sbjct: 13  LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKH 72

Query: 128 VTLEDAGLYTIKVENNYGSVEATA--RLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
           +  +D  +Y + + +  G         L+I +    +S+PK+             + T  
Sbjct: 73  LKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER---VSKPKIS--------WTCINTTLT 121

Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
           C+V        +++ +++ + +KL                   R+           +F C
Sbjct: 122 CEVMNGTDP--ELNLYQDGKHLKLSQ-----------------RVITHKWTTSLSAKFKC 162

Query: 246 RVANELGEVVTSACL 260
              N++ +  +   +
Sbjct: 163 TAGNKVSKESSVEPV 177

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 62.6 bits (152), Expect = 5e-12
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 33/173 (19%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI---ARLKIPHV 235
           G  +  +     +  +  DI W + +   K+    K +     K+   +     LKI H+
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 236 YPEDEGEFTCRVANELGEVVTSACLIVDV----------VKGKDLTSDGRLNIITVGGTS 285
             +D+  +   + +  G+ V      + +              + T    L    + GT 
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTT----LTCEVMNGTD 129

Query: 286 V----------------LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
                            +     T   S K++    N+   +S    V+   +
Sbjct: 130 PELNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 11/75 (14%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
                  C V     P  +  +DGK    + RV              + T   +  +   
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVI-----------THKWTTSLSAKFKCT 163

Query: 140 VENNYGSVEATARLE 154
             N      +   + 
Sbjct: 164 AGNKVSKESSVEPVS 178

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
            +          + G +    C V        +W KDGK  + +++V +      R L +
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
            +    +AG Y+ +     G  + + RL++
Sbjct: 71  QQAGQAEAGEYSCEA----GGQQLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 65.5 bits (160), Expect = 9e-14
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
            K       ++   G S T  C+V        +++W+++ + +   S ++  V+      
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQAQT---EVTWYKDGKKLSSSSKVR--VEAVGC-- 64

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
               RL +      + GE++C      G    S  L V
Sbjct: 65  --TRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 19/85 (22%)

Query: 242 EFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDITGDDS 297
             +C VA    EV                GK L+S  ++ +  VG T  L ++     ++
Sbjct: 30  TLSCEVAQAQTEV-----------TWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEA 78

Query: 298 GKYQVHVSNQHGSDSCYASVAVEGR 322
           G+Y        G       + V G+
Sbjct: 79  GEYSCEA----GGQQLSFRLQVAGQ 99

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 72.0 bits (176), Expect = 3e-15
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 26/193 (13%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE-----KEDLRF----LEISEVT 129
           +G +V  +C    +        +       N      E     +E L        I  V 
Sbjct: 16  VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQ 75

Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
           + D+G Y   V            +++      I   ++L             V   CQ +
Sbjct: 76  VRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID-TRILEVPG------TGEVQLTCQAR 128

Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
             P    ++SW   +            ++       V + L++    P+    F+C   N
Sbjct: 129 GYPL--AEVSWQNVS-----VPANTSHIRTPEGLYQVTSVLRLK---PQPSRNFSCMFWN 178

Query: 250 ELGEVVTSACLIV 262
              + +TSA +  
Sbjct: 179 AHMKELTSAIIDP 191

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
                      V+  C   G P    SW     PA  +   T   +   +   +  +  +
Sbjct: 110 TRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRT--PEGLYQVTSVLRLKPQ 167

Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
            +  ++    N +     +A ++ 
Sbjct: 168 PSRNFSCMFWNAHMKELTSAIIDP 191

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 70.0 bits (171), Expect = 4e-15
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 75  KICDLGDTVR-----FQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR-------F 122
               L   V         SV GQPAP   W  +G      + +     E           
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
           L +++ T  + G YT+   N +G   A+     MD 
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 198 ISWFRNNRLIKLDSDMKPEV-QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256
           + W  N  ++   S +  E  +  + E +    L++      + G +T   AN  G+   
Sbjct: 32  LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91

Query: 257 SACLIV 262
           S     
Sbjct: 92  SIMAAF 97

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 7/63 (11%)

Query: 267 GKDLTSDGRLNIITVGGT-------SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           G  L     +    +            L +   T  ++G Y +  +N  G  S     A 
Sbjct: 38  GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97

Query: 320 EGR 322
              
Sbjct: 98  MDN 100

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
            + V   C +  +P     W+KDG+    +  + +++++ +R L +  V LED+G Y  +
Sbjct: 28  LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86

Query: 140 VENNYGSVEATARLEIMDPRAIISRP 165
           +        A+  + + +P   I   
Sbjct: 87  I----DDESASFTVTVTEPPVRIIYS 108

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 60.5 bits (147), Expect = 7e-12
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 150 TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL 209
           ++     D  + I  P    G   +     + V   C++        ++ W ++   +  
Sbjct: 2   SSGSSGTDVSSWIVYPS---GKVYVAAVRLERVVLTCELCRPWA---EVRWTKDGEEVVE 55

Query: 210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              +  + +        + RL +P V  ED GE+ C +     +   S  + V
Sbjct: 56  SPALLLQKEDT------VRRLVLPAVQLEDSGEYLCEI----DDESASFTVTV 98

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 19/87 (21%)

Query: 242 EFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDITGDDS 297
             TC +     EV           +    G+++     L +        L +  +  +DS
Sbjct: 32  VLTCELCRPWAEV-----------RWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDS 80

Query: 298 GKYQVHVSNQHGSDSCYASVAVEGRKI 324
           G+Y   +      +S   +V V    +
Sbjct: 81  GEYLCEI----DDESASFTVTVTEPPV 103

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 71.6 bits (175), Expect = 6e-15
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 33/191 (17%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----------------L 123
            + V              +W K    A            ++ F                L
Sbjct: 14  DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73

Query: 124 EISEVTLEDAGLYTIKVEN-NYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
               +T++D G+YT+ + + NY   +AT R  +  P       +    + N    + DSV
Sbjct: 74  LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP-----VTQPFLQVTNTTVKELDSV 128

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
           T  C    +  N   I W  N++ ++L   M   +  ++        L+I  +  ED GE
Sbjct: 129 TLTCLSNDIGAN---IQWLFNSQSLQLTERMT--LSQNNSI------LRIDPIKREDAGE 177

Query: 243 FTCRVANELGE 253
           + C ++N +  
Sbjct: 178 YQCEISNPVSV 188

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 57.4 bits (138), Expect = 6e-10
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
            + +    N      D+V   C           W  + +      R+T+ +  +   L I
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQ--NNSILRI 167

Query: 126 SEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDP 158
             +  EDAG Y  ++ N      + + +L+I+  
Sbjct: 168 DPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD 201

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 23/183 (12%), Positives = 47/183 (25%), Gaps = 51/183 (27%)

Query: 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM--KPEVQVDSKENLVIAR----- 229
            + ++V        +P      +W++ N            P   ++        R     
Sbjct: 12  AEDNNVLLLVHN--LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 230 ---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK-------------------- 266
              L    +  +D G +T  + +E      +                             
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129

Query: 267 -----------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
                             + L    R+ +      S+L I+ I  +D+G+YQ  +SN   
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTERMTL--SQNNSILRIDPIKREDAGEYQCEISNPVS 187

Query: 310 SDS 312
              
Sbjct: 188 VRR 190

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-----ATPNARVTIREKEDL 120
           PR    P + I   G+     C   G+P P   W K G+        P +   +     L
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69

Query: 121 RFLEI--SEVTLEDAGLYTIKVENNYGS-VEATARLEI 155
            FL I     +  D G+Y     N  G  V   A LE+
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 57.5 bits (139), Expect = 9e-11
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD-MKPEVQVDS 221
             P+++    +L    G+  T  C+ +  P     I W++    ++ D D  +    +  
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT--IEWYKGGERVETDKDDPRSHRMLLP 65

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDV 264
             +L   R+        DEG + C   N LGE V+  A L V  
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 68.8 bits (168), Expect = 3e-14
 Identities = 22/191 (11%), Positives = 55/191 (28%), Gaps = 37/191 (19%)

Query: 79  LGDTVRFQCSV--TGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-------LEISEVT 129
           LG  +                 W +         R      +   F       L+I  +T
Sbjct: 10  LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69

Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
            +D+G Y + V +  G+      L++     ++S+P +          +  + T  C+V 
Sbjct: 70  RDDSGTYNVTVYSTNGTRILNKALDL-RILEMVSKPMIY--------WECSNATLTCEVL 120

Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
                  ++  ++    ++                    +  + + +      F C+  N
Sbjct: 121 EGTDV--ELKLYQGKEHLRSLR-----------------QKTMSYQWTNLRAPFKCKAVN 161

Query: 250 ELGEVVTSACL 260
            + +      +
Sbjct: 162 RVSQESEMEVV 172

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 56.9 bits (137), Expect = 4e-10
 Identities = 18/157 (11%), Positives = 46/157 (29%), Gaps = 23/157 (14%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI-ARLKIPHVYP 237
           G  +        +  +  ++ W R + L+                 ++    LKI ++  
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 238 EDEGEFTCRVANELGEVVTSACLIV----------------------DVVKGKDLTSDGR 275
           +D G +   V +  G  + +  L +                      +V++G D+     
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLY 130

Query: 276 LNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
                +      T+     +    ++    N+   +S
Sbjct: 131 QGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 167

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 65  SPRFYA-VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRF 122
           S  F   +        G  +R    +    A    W K+G+    +  +         R 
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVK-WLKNGQEIQMSGSKYIFESIGAKRT 73

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           L IS+ +L D   Y   V    G  + +  L +
Sbjct: 74  LTISQCSLADDAAYQCVV----GGEKCSTELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 164 RPKVLNGLENL-RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
                  LE   +   G  +    ++        ++ W +N + I++         + +K
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVELADHDA---EVKWLKNGQEIQMSGSKYIFESIGAK 71

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                  L I      D+  + C V    G    S  L V
Sbjct: 72  -----RTLTISQCSLADDAAYQCVV----GGEKCSTELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 23/98 (23%)

Query: 231 KIPHVYPEDEGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTSDG-RLNIITVG 282
           K+   Y   +G     T  +A+   EV           K    G+++   G +    ++G
Sbjct: 21  KLEPAYQVSKGHKIRLTVELADHDAEV-----------KWLKNGQEIQMSGSKYIFESIG 69

Query: 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
               LTI   +  D   YQ  V    G + C   + V+
Sbjct: 70  AKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 71.4 bits (174), Expect = 5e-14
 Identities = 33/274 (12%), Positives = 60/274 (21%), Gaps = 59/274 (21%)

Query: 80  GDTVRFQCSVTG---QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
                  CS+ G           +   +   P         +         VT ED G  
Sbjct: 203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT---VTYGNDSFSAKASVSVTAEDEGTQ 259

Query: 137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
            +      G+        +     I S P     L      +G  VT +C+         
Sbjct: 260 RLTCAVILGNQSQETLQTVT----IYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK--- 312

Query: 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG--EV 254
            ++                            A+L +     ++   F+C    E+    +
Sbjct: 313 -VTLNGVPAQPLGPR----------------AQLLLKATPEDNGRSFSCSATLEVAGQLI 355

Query: 255 VTSACLIVDV-VKGKDLTSDGRLNIITVGGTSV--------------------------L 287
             +    + V    +    D   N      +                             
Sbjct: 356 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG 415

Query: 288 TIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
               +T D  G Y     +  G  +   +V V  
Sbjct: 416 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 70.7 bits (172), Expect = 9e-14
 Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 24/176 (13%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
           G +V   CS +                TP  +  +    +          +++       
Sbjct: 14  GGSVLVTCSTSCDQPMLLGIE------TPLPKKELLLPGN-NRKVYELSNVQEDSQPMCY 66

Query: 140 VENNYGSVEATARLEIMD-PRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-VVPPNDHD 197
                G   A   L +   P  +   P             G ++T  CQV+   P  +  
Sbjct: 67  SNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV------GKNLTLRCQVEGGAPRANLT 120

Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253
           +   R  + +K +  +    +V            +          F+CR   +L  
Sbjct: 121 VVLLRGEKELKREPAVGEPAEVT---------TTVLVRRDHHGANFSCRTELDLRP 167

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 70.3 bits (171), Expect = 1e-13
 Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 41/212 (19%)

Query: 55  SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
             ++T  + S P    +        G  V  +C    +     +                
Sbjct: 273 ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR------ 326

Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE----ATARLEIMDPRAIISRPKVLNG 170
                   L +     ++   ++                T  L ++    +  R      
Sbjct: 327 ------AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP--- 377

Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
             N    +    T  CQ    P    ++   ++                       +   
Sbjct: 378 -GNWTWPENSQQTPMCQAWGNPL--PELKCLKDG-------------------TFPLPIG 415

Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           +   V  + EG + CR  +  GEV     + V
Sbjct: 416 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 61.8 bits (149), Expect = 7e-11
 Identities = 20/98 (20%), Positives = 26/98 (26%), Gaps = 15/98 (15%)

Query: 63  TSSPRFYAV--PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
              PR      P N            C   G P P     KDG    P            
Sbjct: 366 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------- 414

Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
              E   VT +  G Y  +  +  G V     + ++ P
Sbjct: 415 --GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 58.3 bits (140), Expect = 9e-10
 Identities = 30/280 (10%), Positives = 71/280 (25%), Gaps = 41/280 (14%)

Query: 72  PHNKICDLGDTVRFQCSVTG-QPAPWT--SWSKDGKPATPNARVTIREKEDLRFLEISEV 128
           P      +G  +  +C V G  P         +  K       V    +     L   + 
Sbjct: 93  PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD- 151

Query: 129 TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD---GDSVTFE 185
                  ++ + E +              P  + +        + +           T  
Sbjct: 152 --HHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVV 209

Query: 186 CQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
           C +  + P ++  +     ++ +       P V   +      A +       E     T
Sbjct: 210 CSLDGLFPVSEAQVHLALGDQRLN------PTVTYGNDSFSAKASV-SVTAEDEGTQRLT 262

Query: 245 CRVANELGEVVTSACLIVD-------------VVKGKDLT----SDGRLNII-------T 280
           C V        T   + +              V +G ++T    +  R  +         
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP 322

Query: 281 VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
           +G  + L ++    D+   +    + +      + +   E
Sbjct: 323 LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 66.2 bits (161), Expect = 5e-14
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 12/105 (11%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKDGK---PATPNARVTIREKE 118
              F   P +    +G ++ F   V G      P   W K       +     + + +  
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 119 DLRF------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
           D         L I++      G Y  +V        +   L + +
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 157 DPRAI-ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRL---IKLDS 211
           DP  + + RP      ++     G S+TF  +V          + WF+   +    K+  
Sbjct: 2   DPIGLFVMRP------QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQ 55

Query: 212 DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
            ++     D    + +  L I    P   G + C V+ +     ++  L V 
Sbjct: 56  HLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 11/53 (20%), Positives = 19/53 (35%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           G+ L      +  +      L I D     +G Y+  VS +   D    ++ V
Sbjct: 54  GQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 68.9 bits (168), Expect = 1e-13
 Identities = 28/212 (13%), Positives = 55/212 (25%), Gaps = 41/212 (19%)

Query: 55  SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
             ++T  + S P    +        G  V  +C    +       + +G PA P      
Sbjct: 88  ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRA----KVTLNGVPAQPLGPRA- 142

Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSV----EATARLEIMDPRAIISRPKVLNG 170
                   L +     ++   ++                T  L ++    +  R      
Sbjct: 143 -------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDC---- 191

Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
             N    +    T  CQ    P    ++   ++                       +   
Sbjct: 192 PGNWTWPENSQQTPMCQAWGNPL--PELKCLKDG-------------------TFPLPIG 230

Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           +   V  + EG + CR  +  GEV     + V
Sbjct: 231 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 67.0 bits (163), Expect = 6e-13
 Identities = 32/274 (11%), Positives = 56/274 (20%), Gaps = 59/274 (21%)

Query: 80  GDTVRFQCSVTG---QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
                  CS+ G           +   +   P       +    +         E     
Sbjct: 18  DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-VTYGNDSFSAKASVSVTAEDEGTQRL 76

Query: 137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
           T  V     S E    + I    A           E      G  VT +C+         
Sbjct: 77  TCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE------GTEVTVKCEAHPRAK--- 127

Query: 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG--EV 254
            ++                            A+L +     ++   F+C    E+    +
Sbjct: 128 -VTLNGVPAQPLGPR----------------AQLLLKATPEDNGRSFSCSATLEVAGQLI 170

Query: 255 VTSACLIVDVVKGKDLTSDGRLNIITV--GGTSVLT------------------------ 288
             +    + V+ G  L         T                                  
Sbjct: 171 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG 230

Query: 289 -IEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
               +T D  G Y     +  G  +   +V V  
Sbjct: 231 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 61.6 bits (149), Expect = 4e-11
 Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 13/88 (14%)

Query: 71  VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
            P N            C   G P P     KDG    P               E   VT 
Sbjct: 191 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------GESVTVTR 237

Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDP 158
           +  G Y  +  +  G V     + ++ P
Sbjct: 238 DLEGTYLCRARSTQGEVTREVTVNVLSP 265

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 72  PHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
             ++    G  V F C+  +  PA    W++      P+ R           L I  V  
Sbjct: 17  QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGI----LTIRNVQP 71

Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
            DAG Y     N +   + TA L +
Sbjct: 72  SDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 18/107 (16%)

Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
               +   +  +         G  VTF C  +   P    + W R        +   P  
Sbjct: 10  IMVTVEEQRSQSVRP------GADVTFICTAKSKSPAYT-LVWTRL------HNGKLPSR 56

Query: 218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
            +D    L I      +V P D G + C  +N       +A L V V
Sbjct: 57  AMDFNGILTI-----RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 286 VLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
           +LTI ++   D+G Y    SN    D   A++ V+
Sbjct: 63  ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 68.3 bits (166), Expect = 7e-13
 Identities = 28/205 (13%), Positives = 59/205 (28%), Gaps = 19/205 (9%)

Query: 82  TVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE 141
            +     V   P     W+  G P     R           L IS        +    + 
Sbjct: 93  LLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE---------LAISTFWPNFYQVIFEVIT 143

Query: 142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF 201
           + +    A   ++++      +R      ++N+    G   TF+C           +   
Sbjct: 144 SGHQGYLAIDEVKVLGHP--CTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201

Query: 202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261
             +       ++K            IA   + +    D G++ C +  E G  +++   +
Sbjct: 202 GIDVRDAPLKEIKVTSSRRF-----IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 256

Query: 262 VDVVKGKDLTSDGRLNIITVGGTSV 286
           V               + +VG T +
Sbjct: 257 VVKEPP---VPIAPPQLASVGATYL 278

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 4/130 (3%)

Query: 44  SSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP---WTSWS 100
           +S      +++         +    +    N   + G    FQCS  G+           
Sbjct: 143 TSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG 202

Query: 101 KDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPR 159
            D + A          +  +    +   T  DAG Y   +    G  +   A L + +P 
Sbjct: 203 IDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPP 262

Query: 160 AIISRPKVLN 169
             I+ P++ +
Sbjct: 263 VPIAPPQLAS 272

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P++    E      G  V+F C       +    +W  +N  ++ D++M+    + ++  
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQ-DAEMENYAHLRAQGG 69

Query: 225 LVI---ARLKIPHVYPEDEGEFTCRVANELGEVVTS-ACLIVD 263
            ++     L++ +V    EG + C ++N  G   +  A L ++
Sbjct: 70  ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 61.2 bits (148), Expect = 4e-12
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTS--WSKDGKP---ATPNARVTIREKEDL 120
           P+    P  +    G  V F CS         +  W  D +    A       +R +   
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 121 RF-----LEISEVTLEDAGLYTIKVENNYGSVEAT-ARLEI 155
                  L +  V     G Y   + N++GS  +  A L I
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 65.1 bits (158), Expect = 3e-12
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 12/182 (6%)

Query: 78  DLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTL----- 130
               T++  C V+G  P     +W +DG+    +       +E       SE+TL     
Sbjct: 22  HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHW 81

Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
                YT +V     + E + +         +S         +L      S T  C V  
Sbjct: 82  LSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLF--IRKSPTITCLVVD 139

Query: 191 VPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
           + P+     ++W R +      S  K E Q +     V + L +      +   + CRV 
Sbjct: 140 LAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT-VTSTLPVGTRDWIEGETYQCRVT 198

Query: 249 NE 250
           + 
Sbjct: 199 HP 200

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 14/194 (7%)

Query: 68  FYAVPHNKICDLGDTVRFQCSVTG----QPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
           + + P      +  +    C V      +     +WS+       ++     ++ +    
Sbjct: 116 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT 175

Query: 123 ----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
               L +      +   Y  +V + +                  + P+V           
Sbjct: 176 VTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRS--TTKTSGPRAAPEVYAFATPEWPGS 233

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLD--SDMKPEVQVDSKENLVIARLKIPHVY 236
            D  T  C +Q   P D  + W  N   +     S  +P     S   +  +RL++    
Sbjct: 234 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVF-SRLEVTRAE 292

Query: 237 PEDEGEFTCRVANE 250
            E + EF CR  +E
Sbjct: 293 WEQKDEFICRAVHE 306

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 62.7 bits (152), Expect = 9e-12
 Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 35/207 (16%)

Query: 79  LGDTVRFQCSVTGQPAPWTS-----WSKDGKP---------------ATPNARVTIREKE 118
            G  +  +C    +     +     W  + K                ++   R  + + +
Sbjct: 15  YGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ 74

Query: 119 DLR---FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLR 175
                  L+I++V L+DAG+Y   +    G+      +++  P   I++  ++       
Sbjct: 75  LSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPV--- 130

Query: 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV 235
                     CQ +  P    ++ W  ++  +          + + K   V + L+I   
Sbjct: 131 ---TSEHELTCQAEGYPK--AEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN-- 183

Query: 236 YPEDEGEFTCRVANELGEVVTSACLIV 262
                  F C       E   +A L++
Sbjct: 184 -TTTNEIFYCTFRRLDPEENHTAELVI 209

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 3/101 (2%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKED 119
           ++ +           +  +       C   G P     W+  D +  +     T  ++E+
Sbjct: 112 KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREE 171

Query: 120 LRFLEISEVTL--EDAGLYTIKVENNYGSVEATARLEIMDP 158
             F   S + +      ++             TA L I + 
Sbjct: 172 KLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 26/204 (12%), Positives = 48/204 (23%), Gaps = 69/204 (33%)

Query: 179 GDSVTFECQVQVVPPNDHD---ISWFRNNRLIKL--DSDMKPEVQVDSKENLV------- 226
           G ++T EC+  V    D     + W   ++ I      +   +VQ  S            
Sbjct: 16  GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75

Query: 227 ---IARLKIPHVYPEDEGEFTCRV---------------------------ANELGEVVT 256
               A L+I  V  +D G + C +                            + +     
Sbjct: 76  SLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHE 135

Query: 257 SAC-------------------LIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDS 297
             C                   L            +   N+     TS L I       +
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNV-----TSTLRINT---TTN 187

Query: 298 GKYQVHVSNQHGSDSCYASVAVEG 321
             +          ++  A + +  
Sbjct: 188 EIFYCTFRRLDPEENHTAELVIPE 211

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 62.1 bits (150), Expect = 2e-11
 Identities = 39/205 (19%), Positives = 66/205 (32%), Gaps = 34/205 (16%)

Query: 79  LGDTVRFQCSVTGQPAP----WTSWSKDGKPAT--------PNARVTIREKEDLRF---- 122
            G +V   C+ TG        W    + G               +VT+ +          
Sbjct: 14  RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73

Query: 123 -----LEISEVTLEDAGLYTIKVE-NNYGSVEATARLEIMDPRAIISRPKVLNGLENL-R 175
                L ++E  + D   Y   V     G+ EATARL +          +V      L  
Sbjct: 74  DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP---EATEVSPNKGTLSV 130

Query: 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL-------VIA 228
             D       C  +   P    I+W+RN + +++  +M PE  + S+          + +
Sbjct: 131 MEDSAQEIATCNSRNGNPAP-KITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189

Query: 229 RLKIPHVYPEDEGEFTCRVANELGE 253
            L +     + +  F C     L E
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPE 214

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 45/189 (23%)

Query: 79  LGDTVRFQCSVT------------GQPAPWTSWSKDGKPATPNARVTIREKEDLR--FLE 124
            G  V                           +  +GK     +    R   D     L 
Sbjct: 13  TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
           I  V+ ED G Y +++  +    +    +E+ +    +S+P +          +  + T 
Sbjct: 73  IYNVSKEDRGDYYMRM-LHETEDQWKITMEVYEM---VSKPMIY--------WECSNATL 120

Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
            C+V      D ++  ++    ++                    +  + + +      F 
Sbjct: 121 TCEVLEGT--DVELKLYQGKEHLRSLR-----------------QKTMSYQWTNLRAPFK 161

Query: 245 CRVANELGE 253
           C+  N + +
Sbjct: 162 CKAVNRVSQ 170

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 24/181 (13%), Positives = 56/181 (30%), Gaps = 41/181 (22%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIKLDSDMKPEVQVD 220
                +N +       G +VT          +   ++W    N ++++   + K  V   
Sbjct: 4   QSVPNVNAIT------GSNVTLTILKHP-LASYQRLTWLHTTNQKILEYFPNGKKTVFES 56

Query: 221 S-----KENLVIARLKIPHVYPEDEGEFTCRVANELGE---------------VVTSAC- 259
                   +     L+I +V  ED G++  R+ +E  +               ++   C 
Sbjct: 57  VFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECS 116

Query: 260 ---LIVDVVKGKDLT----SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
              L  +V++G D+              +      T+     +    ++    N+   +S
Sbjct: 117 NATLTCEVLEGTDVELKLYQGKEH----LRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 172

Query: 313 C 313
            
Sbjct: 173 E 173

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 17/217 (7%)

Query: 44  SSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWT-SWSK 101
                T +   +                          TV F C   G  P   T  W K
Sbjct: 96  KGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFK 155

Query: 102 DGKPATPNARVTIREKEDLRFLEISEVTL-----EDAGLYTIKVENNYGSVE---ATARL 153
           +G   +          E + +   S   +     +       +V +     +    TA L
Sbjct: 156 NGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANL 215

Query: 154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM 213
                                     + V   CQV+   P    ++W  N  + + ++  
Sbjct: 216 SETIRVPPTLEVTQQPVRA------ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS 269

Query: 214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
                 D   N + + L +      D+ + TC+V ++
Sbjct: 270 TVTENKDGTYNWM-SWLLVNVSAHRDDVKLTCQVEHD 305

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 28/193 (14%)

Query: 79  LGDTVRFQCSVTG-QPAPWTSWSKDGKPATP--------------NARVTIREKEDLRFL 123
            G++    C+VT   P     W +   PA                    + + +     +
Sbjct: 17  AGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSI 76

Query: 124 EISEVTLEDAGLYT------IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCC 177
            IS +T  DAG Y          +  + S   T       P A +               
Sbjct: 77  SISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP----- 131

Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
              +V+F C+     P D  + WF+N   +         V      ++  +  K+     
Sbjct: 132 -QHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIH-STAKVVLTRE 189

Query: 238 EDEGEFTCRVANE 250
           +   +  C VA+ 
Sbjct: 190 DVHSQVICEVAHV 202

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 58.6 bits (141), Expect = 4e-11
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF--------- 122
            H     +G+ +   C+   +      ++ +   +    +  +      +          
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 123 -LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
            L I  VT  D GLYT    +   + + +  + + + 
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 55.9 bits (134), Expect = 4e-10
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM--KPEVQVDSKENLVIARLKIPHVY 236
           G+ +   C  +       D +W   +   +    +    + Q  S+    ++ L I  V 
Sbjct: 23  GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82

Query: 237 PEDEGEFTCRVANELGEVVTSACLIV 262
             D+G +TC  ++ L     S  + V
Sbjct: 83  RSDQGLYTCAASSGLMTKKNSTFVRV 108

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 4/88 (4%)

Query: 242 EFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRL----NIITVGGTSVLTIEDITGDDS 297
              C    EL   +                 +  L            S LTI+ +T  D 
Sbjct: 27  VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 86

Query: 298 GKYQVHVSNQHGSDSCYASVAVEGRKII 325
           G Y    S+   +      V V  +  +
Sbjct: 87  GLYTCAASSGLMTKKNSTFVRVHEKPFV 114

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 59.7 bits (144), Expect = 7e-11
 Identities = 20/183 (10%), Positives = 46/183 (25%), Gaps = 19/183 (10%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
           P     + G ++   CS                  T   R   +        ++ ++  E
Sbjct: 9   PRVAFVERGGSLWLNCSTNCPRPERGGLE------TSLRRNGTQRGLRWLARQLVDIR-E 61

Query: 132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK-VLNGLENLRCCDGDSVTFECQVQ- 189
                         +++A   +           P  V           G++ T  C+V  
Sbjct: 62  PETQPVCFFRCARRTLQARGLIRTFQR------PDRVELMPLPPWQPVGENFTLSCRVPG 115

Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
             P     ++  R  + +      +       +    +    +     +    F+CR   
Sbjct: 116 AGPRASLTLTLLRGAQELI----RRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171

Query: 250 ELG 252
           +L 
Sbjct: 172 DLR 174

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 8e-11
 Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK---PATPNARVTIREKEDLRFLEISEV 128
                 D G TV+F C   G P P   W    K    A  N R+T+        LE+   
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD---GTLEVRYA 448

Query: 129 TLEDAGLYTIKVENNYGSVEATARLEI 155
            ++D G Y     N  G+    A L +
Sbjct: 449 QVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
           G +V F C+    PP    I W      L+   S+ +  V  D         L++ +   
Sbjct: 400 GHTVQFVCRADGDPPPA--ILWLSPRKHLVSAKSNGRLTVFPDGT-------LEVRYAQV 450

Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
           +D G + C  AN  G     A L V
Sbjct: 451 QDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 269 DLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
              S+GR   +TV     L +      D+G Y    +N  G+DS  A + V
Sbjct: 428 SAKSNGR---LTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 59.1 bits (142), Expect = 1e-10
 Identities = 25/193 (12%), Positives = 50/193 (25%), Gaps = 29/193 (15%)

Query: 79  LGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT 137
           LG + +  C +          W              ++       L +   +L  AG   
Sbjct: 21  LGASRQLTCRLACADRGASVQWRGLDTS-----LGAVQSDTGRSVLTVRNASLSAAGTRV 75

Query: 138 IKVENNYGSVEATARLEIMD--PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPND 195
                   + + T +L +     +  +S   ++ G               C    V P D
Sbjct: 76  CVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPG----------DPEVACTAHKVTPVD 125

Query: 196 HD---ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP-------HVYPEDEG-EFT 244
            +    S     + ++    + PEVQ + +E      +                      
Sbjct: 126 PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALY 185

Query: 245 CRVANELGEVVTS 257
           C+    L  +  S
Sbjct: 186 CQATMRLPGLELS 198

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 57.3 bits (138), Expect = 5e-10
 Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 37/187 (19%)

Query: 79  LGDTVRFQCSVT-GQPAPWTSWSKD---------GKPATPNARVTIREKEDLRF------ 122
           LG++V        G+   + +W  +          +  +P   VT  ++           
Sbjct: 12  LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
           L++S + +ED G Y  ++     +  ++  L I+     +   +V N  +  +      +
Sbjct: 72  LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ---LRNIQVTNHSQLFQ-NMTCEL 127

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
              C V+    N     W                  + S+ NL +            E +
Sbjct: 128 HLTCSVEDADDNVS-FRWEALGN------------TLSSQPNLTV----SWDPRISSEQD 170

Query: 243 FTCRVAN 249
           +TC   N
Sbjct: 171 YTCIAEN 177

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 24/190 (12%), Positives = 51/190 (26%), Gaps = 47/190 (24%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK---LDSDMKPEVQV 219
             P ++NG+       G+SVT   +        + I+W  N   +          PE+ V
Sbjct: 3   LTPLMVNGIL------GESVTLPLEFPA-GEKVNFITWLFNETSLAFIVPHETKSPEIHV 55

Query: 220 DSKENLVIAR------LKIPHVYPEDEGEFTCRVAN------------------------ 249
            + +            L++ ++  ED G +  +++                         
Sbjct: 56  TNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTN 115

Query: 250 ------ELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVH 303
                  +   +   C + D         +   N ++     +    D        Y   
Sbjct: 116 HSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPN-LTVSWDPRISSEQDYTCI 174

Query: 304 VSNQHGSDSC 313
             N   + S 
Sbjct: 175 AENAVSNLSF 184

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
            +P     P +     G     +C  +       SW       TPN  V       +R  
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWI------TPNGTVMTHGAYKVRIA 392

Query: 123 ------LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
                 L  + VT++D G+YT  V N+ G+  A+A L +
Sbjct: 393 VLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
             P ++    +L   +G +   +C+          +SW   N  +      K  + V S 
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRASTSLT---SVSWITPNGTVMTHGAYKVRIAVLSD 396

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
             L        +V  +D G +TC V+N +G    SA L V 
Sbjct: 397 GTLNF-----TNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
           G  +T       I V     L   ++T  D+G Y   VSN  G+ +  A++ V G
Sbjct: 379 GTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 71  VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA---RVTIREKEDLRFLEISE 127
                   LGDT+  +C    Q       S   +          V++R  +    L   +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD----LFFKK 307

Query: 128 VTLEDAGLYTIKVENNYGSVEATARLEI 155
           V +ED G+YT        +   +  L++
Sbjct: 308 VQVEDGGVYTCYAMGETFNETLSVELKV 335

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 22/113 (19%)

Query: 163 SRPKVLNG---LENLRCCD----------GDSVTFECQVQVVPPNDHDISWFRNNRLIKL 209
              K L+    L+   C +          GD++T  C  +        +    +N  +  
Sbjct: 232 MHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGM--TKVWVSPSNEQVLS 289

Query: 210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                     +         L    V  ED G +TC    E      S  L V
Sbjct: 290 QGSNGSVSVRNG-------DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 17/168 (10%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
               V   C      A       +G       R    E+ +     I ++    AG Y+ 
Sbjct: 20  KEKQVTICCQGN-YGAVEYQLHFEGSL-FAVDRPKPPERINKVKFYIPDMNSRMAGQYSC 77

Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
                    E +  L+++     +     L+         G+ VTF C++          
Sbjct: 78  IYRVGELWSEPSNLLDLVVTE--MYDTPTLSVHPGPEVISGEKVTFYCRLDTAT------ 129

Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
           S F    L+K       +      +    A   +  V     G + C 
Sbjct: 130 SMF---LLLKEGRSSHVQRGYGKVQ----AEFPLGPVTTAHRGTYRCF 170

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 10/107 (9%)

Query: 61  RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--------KPATPNARV 112
           ++  S   + +  N     G T    C V         WS           K A  + R+
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61

Query: 113 TIREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
            +         + +S+V+L D G YT  +        + A L ++  
Sbjct: 62  ELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGV 107

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 43.3 bits (102), Expect = 8e-06
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK----PEVQVDSKENLVI 227
           +N+   +G +    C+V      +  + W    +      D K      +++        
Sbjct: 14  QNVTVVEGGTAILTCRVDQND--NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHE- 70

Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
             + +  V   DEG++TC +   +    + A L V  
Sbjct: 71  LSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLG 106

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 16/181 (8%)

Query: 79  LGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT 137
           L  +V+ QC    +         K+        R+    + D  F+ I  +    AG Y 
Sbjct: 22  LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFV-IDHMDANKAGRYQ 80

Query: 138 IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
            +    +     +  LE++     +     L+    L    G++++  C    +P     
Sbjct: 81  CQYRIGHYRFRYSDTLELVVTG--LYGKPFLSADRGLVLMPGENISLTCSSAHIPF---- 134

Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
              F    L K      P+ Q         A   +  V     G + C         + S
Sbjct: 135 -DRF---SLAKEGELSLPQHQSGEHP----ANFSLGPVDLNVSGIYRCYGWYNRSPYLWS 186

Query: 258 A 258
            
Sbjct: 187 F 187

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 31/175 (17%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
               V   C      A       +G       R    E+ +     I ++    AG Y+ 
Sbjct: 17  KEKQVTICCQGN-YGAVEYQLHFEGSL-FAVDRPKPPERINKVKFYIPDMNSRMAGQYSC 74

Query: 139 KVENNYGSVEATARLEIM----DPRAIIS---RPKVLNGLENLRCCDGDSVTFECQVQVV 191
                    E +  L+++         +S    P+V++         G+ VTF C++   
Sbjct: 75  IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVIS---------GEKVTFYCRLDTA 125

Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
                  S F    L+K       +      +    A   +  V     G + C 
Sbjct: 126 T------SMF---LLLKEGRSSHVQRGYGKVQ----AEFPLGPVTTAHRGTYRCF 167

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
            +++ GLE+++  DG+   F   +  +       +WF N   +K +           +  
Sbjct: 9   ARLVAGLEDVQVYDGEDAVFSLDLSTIIQG----TWFLNGEELKSNEPEGQVEPGALRYR 64

Query: 225 LV----IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           +       RL +  V  +D G            V  SA L +
Sbjct: 65  IEQKGLQHRLILHAVKHQDSGALVGFSC---PGVQDSAALTI 103

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 15/89 (16%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----------LEISEVT 129
           G+   F   ++       +W  +G+    N      E   LR+          L +  V 
Sbjct: 23  GEDAVFSLDLSTIIQG--TWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVK 80

Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDP 158
            +D+G     V  +   V+ +A L I + 
Sbjct: 81  HQDSGAL---VGFSCPGVQDSAALTIQES 106

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 28/183 (15%), Positives = 43/183 (23%), Gaps = 18/183 (9%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT- 137
            G  V  +C             K+ +   P        +       +S VT   AG YT 
Sbjct: 37  RGGHVTLRCHYR-HRFNNFMLYKEDRIHIP----IFHGRIFQESFNMSPVTTAHAGNYTC 91

Query: 138 --IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPND 195
                 +  G    +  + IM       R   L          G+ V  +C         
Sbjct: 92  RGSHPHSPTGWSAPSNPVVIMVTGN--HRKPSLLAHPGPLVKSGERVILQCWS---DIMF 146

Query: 196 HDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV 255
                 +          +       SK     A   I  +     G + C  +       
Sbjct: 147 EHFFLHKEGISKDPSRLVGQIHDGVSK-----ANFSIGPMMLALAGTYRCYGSVTHTPYQ 201

Query: 256 TSA 258
            SA
Sbjct: 202 LSA 204

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 21/185 (11%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTI 138
           G+ V  QC  +          K+G    P+  V  I +        I  + L  AG Y  
Sbjct: 133 GERVILQCW-SDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRC 191

Query: 139 KVENNYGSVEATAR---LEIMDPRAIISRPK--VLNGLENLRCCDGDSVTFECQVQVVPP 193
                +   + +A    L+I+    +    +   L+     +   G+SVT  C  +    
Sbjct: 192 YGSVTHTPYQLSAPSDPLDIV----VTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSY- 246

Query: 194 NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253
                  +    L +     +  +    ++     +   P       G + C  +     
Sbjct: 247 -----DMY---HLSREGGAHERRLP-AVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSP 297

Query: 254 VVTSA 258
              S 
Sbjct: 298 YEWSD 302

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 53.1 bits (127), Expect = 4e-09
 Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 10/105 (9%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK--------DGKPATPNARVTIREK 117
                       + G T+  +C  + +      W          +  P   N++  +   
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 118 EDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
              +  + +  VTL+D G+Y      +        ++ ++     
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKG 105

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP------EVQ 218
             + N  E +   +G ++T +C   +    +  + W   +      ++         ++ 
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRK--NSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59

Query: 219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSD 273
             S   L    + +P+V  +DEG + C   ++         +IV      +    
Sbjct: 60  HHSANQL---SITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRY 110

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 55.6 bits (133), Expect = 5e-09
 Identities = 29/258 (11%), Positives = 58/258 (22%), Gaps = 31/258 (12%)

Query: 66  PRFYAVPHNKICDLGDTVRFQC-SVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           P             GD+V   C  V  +      W      A  +          L    
Sbjct: 7   PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL--- 63

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
           +  V L D+G Y+       G    T  L +  P             +            
Sbjct: 64  LRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVP---------PEEPQLSCFRKSPLSNV 111

Query: 185 ECQVQVV----PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
            C+              +   +       D     +   +S++      +          
Sbjct: 112 VCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPE---GDSSF 168

Query: 241 GEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTS---VLTIEDITGDDS 297
              +  VA+ +G    S                  + +  V        +T +D    +S
Sbjct: 169 YIVSMCVASSVG-SKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS 227

Query: 298 G----KYQVHVSNQHGSD 311
                ++++    +    
Sbjct: 228 SFYRLRFELRYRAERSKT 245

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 32/169 (18%), Positives = 49/169 (28%), Gaps = 14/169 (8%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            G++V   C  T   A      K+  P  P  R    E ++     I  +T + AG Y  
Sbjct: 18  WGNSVTIWCQGT-LEAREYRLDKEESP-APWDRQNPLEPKNKARFSIPSMTEDYAGRYRC 75

Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
              +  G  + +  LE++   A             +    G SVT  CQ +         
Sbjct: 76  YYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTS--GKSVTLLCQSRSPMD----- 128

Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVI-ARLKIPHVYPEDEGEFTCR 246
             F    L K  +                 A   +  V     G + C 
Sbjct: 129 -TF---LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCF 173

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 54.1 bits (129), Expect = 6e-09
 Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 49/196 (25%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVT-LEDAGLYTI 138
           G +V   C +         W K+G+                + L + + + +ED+G Y  
Sbjct: 14  GTSVELTCPL--DSDENLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVC 62

Query: 139 KVENNYGS--VEATARLEIMDPRAIISRPKVLNGLENLRCC-----------------DG 179
               +  +  +   AR+   D     +  K     ++ +                     
Sbjct: 63  YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122

Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
            SV   C +      D  I W ++  +I   +  K                 + +   + 
Sbjct: 123 GSVLLTCGLT-----DKTIKWLKDGSIISPLNATKN-------------TWNLGNNAKDP 164

Query: 240 EGEFTCRVANELGEVV 255
            G + C+ A E    +
Sbjct: 165 RGTYQCQGAKETSNPL 180

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 22/185 (11%), Positives = 52/185 (28%), Gaps = 43/185 (23%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPAT--PNARVTIREKEDLRF--------LEISEV 128
           +   V F       P     W K         N+          R         L I  +
Sbjct: 9   VYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL 67

Query: 129 TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV 188
           T  D   Y ++  N   +++    L +++    +S+P +          +  + T  C+V
Sbjct: 68  TSSDEDEYEMESPNITDTMKFF--LYVLEM---VSKPMIY--------WECSNATLTCEV 114

Query: 189 QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
                   ++  ++    ++                    +  + + +      F C+  
Sbjct: 115 LEGTDV--ELKLYQGKEHLRSLR-----------------QKTMSYQWTNLRAPFKCKAV 155

Query: 249 NELGE 253
           N + +
Sbjct: 156 NRVSQ 160

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 51.5 bits (123), Expect = 4e-08
 Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 25/157 (15%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLI--KLDSDMKPEVQVDSKENLVI--ARLKIPH 234
             +VTF     V      ++ W +    +    +S+ +      ++  L      L I +
Sbjct: 10  YGNVTFHVPSNVPLK---EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66

Query: 235 VYPEDEGEFTCRVANELGE--------------VVTSAC----LIVDVVKGKDLTSDGRL 276
           +   DE E+     N                  ++   C    L  +V++G D+      
Sbjct: 67  LTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQ 126

Query: 277 NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
               +      T+     +    ++    N+   +S 
Sbjct: 127 GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 163

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 25/99 (25%), Positives = 32/99 (32%), Gaps = 15/99 (15%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
           S+P     P +     G     +C     P     W        PN  V        R  
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKW------LLPNGTVLSHASRHPRIS 402

Query: 123 ------LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
                 L  S V L D G+YT  V N  G+  A+A L +
Sbjct: 403 VLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 15/109 (13%)

Query: 157 DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
               I+  P+ LN  E      G     +C+   +      + W   N  +   +   P 
Sbjct: 351 SAPFIMDAPRDLNISE------GRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPR 400

Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
           + V +   L  +     HV   D G +TC V N  G    SA L V   
Sbjct: 401 ISVLNDGTLNFS-----HVLLSDTGVYTCMVTNVAGNSNASAYLNVSTA 444

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 14/108 (12%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKDGKPAT----PNARVTIREK 117
           +  F   P +   + G        V G+     P   W K GK         AR + +E 
Sbjct: 12  TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK-GKWLELGSKSGARFSFKES 70

Query: 118 ED------LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR 159
            +         L I +V L D G Y ++V+           +++  PR
Sbjct: 71  HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.8 bits (118), Expect = 6e-08
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 4/99 (4%)

Query: 172 ENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRL---IKLDSDMKPEVQVDSKENLVI 227
           +++    G       +V      D   I WF+   L    K  +    +   +S  N+  
Sbjct: 20  DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79

Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
             L I  V   D G +   V  +         + V+  +
Sbjct: 80  VELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
           G   +     N  +   T  L I  +   D G Y++ V  +   DSC  ++ VE  +
Sbjct: 62  GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR----LKIPH 234
           G S+  +C +         ++W + ++L+ + +         S ++ V       L +  
Sbjct: 18  GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQS 77

Query: 235 VYPEDEGEFTCRVA-NELGEVVTSACLIVDVV 265
           +   D GE+ C       G       L V   
Sbjct: 78  LTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 79  LGDTVRFQCSVTGQPAPWT--SWSKDGKP---ATPNARVTIREKEDLRF-------LEIS 126
            G ++  QC ++   A  T  +W +  +       +    I      R        L + 
Sbjct: 17  KGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQ 76

Query: 127 EVTLEDAGLYTIKVENN-YGSVEATARLEIMDPRAIISRPK 166
            +T+ D G Y         G+      LE+++        +
Sbjct: 77  SLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 31/190 (16%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            G++V  +C  T   A      K+G P  P       E ++     I  +T   AG Y  
Sbjct: 18  RGNSVTIRCQGT-LEAQEYRLVKEGSP-EPWDTQNPLEPKNKARFSIPSMTEHHAGRYRC 75

Query: 139 KVENNYGSVEATARLEI----MDPRAIIS---RPKVLNGLENLRCCDGDSVTFECQVQVV 191
              +  G  E +  LE+       +  +S    P V +         G++VT +C  ++ 
Sbjct: 76  YYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTS---------GENVTLQCGSRLR 126

Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN---LVIARLKIPHVYPEDEGEFTCRVA 248
                    F    L + + D K    +DS+        A   +  V P       C  +
Sbjct: 127 FD------RF---ILTE-EGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGS 176

Query: 249 NELGEVVTSA 258
                 V S 
Sbjct: 177 RRHILQVWSE 186

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 10/100 (10%)

Query: 68  FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK--------PATPNARVTIREKED 119
                 ++    G TV  +C V         WS   +         A  + R+ +     
Sbjct: 41  SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100

Query: 120 LRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
               + IS V L D G YT  +        A + + ++  
Sbjct: 101 HELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVLGI 139

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 52.2 bits (124), Expect = 6e-08
 Identities = 25/183 (13%), Positives = 47/183 (25%), Gaps = 22/183 (12%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
           P   I   G +V   CS +                    +  +    + +  E+S V   
Sbjct: 6   PSKVILPRGGSVLVTCSTSCDQPKLLGIET-----PLPKKELLLPGNNRKVYELSNVQ-- 58

Query: 132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-V 190
           +            G   A   L +          +V           G ++T  CQV+  
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWT-----PERVELAPLPSWQPVGKNLTLRCQVEGG 113

Query: 191 VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
            P  +  +   R  + +K         +  +          +          F+CR   +
Sbjct: 114 APRANLTVVLLRGEKELK---------REPAVGEPAEVTTTVLVRRDHHGANFSCRTELD 164

Query: 251 LGE 253
           L  
Sbjct: 165 LRP 167

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 24/202 (11%), Positives = 50/202 (24%), Gaps = 21/202 (10%)

Query: 72  PHNKICDLGDTVRFQCSVTG-QPAPWTS--WSKDGKPATPNARVTIREKEDLRFLEISEV 128
           P      +G  +  +C V G  P    +    +  K      R     +       +   
Sbjct: 93  PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK---REPAVGEPAEVTTTVLVR 149

Query: 129 TLEDAGLYTIKVENNYGSVEATARLEIMDPRAII-----SRPKVLNGLENLRCCDGDSVT 183
                  ++ + E +              P  +      + P  L     L        T
Sbjct: 150 RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEV--DTQGT 207

Query: 184 FECQVQVVPP-NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
             C +  + P ++  +     ++ +       P V   +      A + +     E    
Sbjct: 208 VVCSLDGLFPVSEAQVHLALGDQRL------NPTVTYGNDSFSAKASVSV-TAEDEGTQR 260

Query: 243 FTCRVANELGEVVTSACLIVDV 264
            TC V        T   + +  
Sbjct: 261 LTCAVILGNQSQETLQTVTIYS 282

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 31/187 (16%), Positives = 48/187 (25%), Gaps = 40/187 (21%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           L   V  +C             K       +  V          L I  +    AG Y  
Sbjct: 21  LEKPVTLRCQGP-PGVDLYRLEKLSSSRYQDQAV----------LFIPAMKRSLAGRYRC 69

Query: 139 KVENNYGSVEATARLEIM----DPRAIIS---RPKVLNGLENLRCCDGDSVTFECQVQVV 191
             +N       + +LE++      +  +S    P V +         G  VT +CQ +  
Sbjct: 70  SYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSS---------GGDVTLQCQTRYG 120

Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251
                    F    L K       +           A   I  V     G + C   +  
Sbjct: 121 F------DQF---ALYKEGDPAPYKNPERWYR----ASFPIITVTAAHSGTYRCYSFSSR 167

Query: 252 GEVVTSA 258
              + SA
Sbjct: 168 DPYLWSA 174

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 24/183 (13%), Positives = 52/183 (28%), Gaps = 18/183 (9%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
           P     +   ++   CS T                T   ++ + E+   +   +S ++  
Sbjct: 9   PKKLAVEPKGSLEVNCSTTCNQPEVGGLE------TSLNKILLDEQAQWKHYLVSNIS-- 60

Query: 132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-V 190
              +       +       + + +  P   +    +   L  +    G S T EC+V  V
Sbjct: 61  HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVI-LTLQPTLVAV----GKSFTIECRVPTV 115

Query: 191 VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
            P +   +  FR N  +      +   +         A         +    F+C    +
Sbjct: 116 EPLDSLTLFLFRGNETLH----YETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD 171

Query: 251 LGE 253
           L  
Sbjct: 172 LMS 174

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 26/224 (11%), Positives = 53/224 (23%), Gaps = 25/224 (11%)

Query: 72  PHNKICDLGDTVRFQCSV-------TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           P + +  L       C +           A +  W  +           I        + 
Sbjct: 10  PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASS--VT 67

Query: 125 ISEVTLEDAGLY-TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
            +++   +  L   I              +    P     +PK      NL C   +   
Sbjct: 68  FTDIASLNIQLTCNILTFGQLEQNVYGITIISGLP---PEKPK------NLSCIVNEGKK 118

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
             C+       +  +     N  +K +          +K +   +             E 
Sbjct: 119 MRCEWD--GGRETHLE---TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEV 173

Query: 244 TCRVANELGEVVTSACLIVDVVKGKDLT-SDGRLNIITVGGTSV 286
                N LG+V +       V K K     +  +       + +
Sbjct: 174 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSIL 217

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 33/239 (13%), Positives = 64/239 (26%), Gaps = 29/239 (12%)

Query: 26  STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRF 85
           S  +   ++ P       +        L            P+           +  T   
Sbjct: 217 SNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKD-------TLMISRTPEV 269

Query: 86  QCSVTG-QPAPWT---SWSKDGKPATPNARVTIREKEDLRF-----LEISEVTLEDAGLY 136
            C V            +W  DG            E+ +  +     L +      +   Y
Sbjct: 270 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 329

Query: 137 TIKVENNYGSVEATARL-----EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV 191
             KV N          +     +  +P+     P      + L     + V+  C V+  
Sbjct: 330 KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP----SRDEL---TKNQVSLTCLVKGF 382

Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
            P+D  + W  N +         P +  D     + ++L +     +    F+C V +E
Sbjct: 383 YPSDIAVEWESNGQPENNYKTTPPVLDSDGS-FFLYSKLTVDKSRWQQGNVFSCSVMHE 440

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 24/195 (12%), Positives = 44/195 (22%), Gaps = 22/195 (11%)

Query: 79  LGDTVRFQCSVTGQPAPWTS----WSKDGKP--------ATPNARVTIREKEDLR---FL 123
           + +     C               W K+ K                  R   D+     +
Sbjct: 8   VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSI 67

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
            I  +   D G Y   V            L  +        P     + +      +   
Sbjct: 68  VILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS--ISDFEIPTSNIRR 125

Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
             C      P  H +SW  N   +    +       +++   V ++L            F
Sbjct: 126 IICSTSGGFPEPH-LSWLENGEEL-NAINTTVSQDPETELYAVSSKLDFN---MTTNHSF 180

Query: 244 TCRVANELGEVVTSA 258
            C +      V  + 
Sbjct: 181 MCLIKYGHLRVNQTF 195

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 13/122 (10%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNN------RLIKLDSDMKPEVQ----VDSKENLVIA 228
            +  T  C   V          +          ++  D ++ PE +     D   N    
Sbjct: 9   KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN---L 65

Query: 229 RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLT 288
            + I  + P DEG + C V     +      L    +  K       ++   +  +++  
Sbjct: 66  SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125

Query: 289 IE 290
           I 
Sbjct: 126 II 127

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 48.3 bits (114), Expect = 8e-07
 Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 50/217 (23%)

Query: 80  GDTVRFQCSVTGQPAPWTS-------WSKDGKP-------ATPNARVTIREKEDLRF--- 122
           G  V   CS +     W S       W +DG+        AT N    ++ +   RF   
Sbjct: 15  GLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLL 74

Query: 123 ---------LEISEVTLEDAGLYTIKVEN------NYGSVEATARLEIMDPRAIISRPKV 167
                    L I +  +ED G Y  +VE       +Y   +    +  +  +  I   + 
Sbjct: 75  GDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEP 134

Query: 168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI 227
           L          G      C +         +++                +     E    
Sbjct: 135 LE--------SGRPTRLSCSLPGSCEAGPPLTFSW----------TGNALSPLDPETTRS 176

Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
           + L +     +     TC++  +  +V T   + ++V
Sbjct: 177 SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 32/177 (18%), Positives = 49/177 (27%), Gaps = 28/177 (15%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
            G  V  +C    Q        ++ K A    R+     +  +F  I  +T E  G Y  
Sbjct: 18  QGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFP-IPSITWEHTGRYRC 75

Query: 139 KVENNYGS-------VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV 191
              ++          +E       + P        V+N         G +VT +C  QV 
Sbjct: 76  YYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVN--------SGGNVTLQCDSQVA 127

Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQ--VDSKENLVIARLKIPHVYPEDEGEFTCR 246
                    F    L K   D  P+             A   +  V P     + C 
Sbjct: 128 FD------GF---ILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCY 175

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 24/184 (13%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLEISEVTL 130
           P   I   G +V   CS +                TP  +  +    +  +  E+S V  
Sbjct: 6   PSKVILPRGGSVLVTCSTSCDQPKLLGIE------TPLPKKELLLPGNNRKVYELSNVQ- 58

Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
            +            G   A   L +          +V           G  +T  CQV+ 
Sbjct: 59  -EDSQPMCYSNCPDGQSTAKTFLTVYWTPE-----RVELAPLPSWQPVGKQLTLRCQVEG 112

Query: 191 VPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
             P     +   R  + +K +  +    +V            +         +F+CR   
Sbjct: 113 GAPRAQLTVVLLRGEKELKREPAVGEPAEV---------TTTVLVRRDHHGAQFSCRTEL 163

Query: 250 ELGE 253
           +L  
Sbjct: 164 DLRP 167

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 12/181 (6%)

Query: 79  LGDTVRFQCSVTG--QPAPWTSWSKDGKPATPNARVTIREKEDLR-------FLEISEVT 129
           +  T +  C V    +  P   +S        +   T   +E           L I    
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303

Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
             +   +  +V  N  +  A     I   +     P+V            D V+  C + 
Sbjct: 304 WLNGKEFKCRV--NSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMIT 361

Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
              P D  + W  + +  +   + +P +  D     V ++L +     E    FTC V +
Sbjct: 362 DFFPEDITVEWQSDGQAPENYKNTQPIMDTDGS-YFVYSKLNVQKSNWEAGNTFTCSVLH 420

Query: 250 E 250
           E
Sbjct: 421 E 421

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 36/234 (15%), Positives = 63/234 (26%), Gaps = 19/234 (8%)

Query: 26  STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRF 85
           ST           +I P         +L             +        +  +  +   
Sbjct: 208 STKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKD-------VLMISLSPIV 260

Query: 86  QCSVTG-QPAPWT---SWSKDGKPATPNARVTIREKEDLRF-----LEISEVTLEDAGLY 136
            C V            SW  +          T RE  +        L I          +
Sbjct: 261 TCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF 320

Query: 137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
             KV  N   + A     I  P+  +  P+V              VT  C V    P D 
Sbjct: 321 KCKV--NNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDI 378

Query: 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
            + W  N +      + +P +  D     + ++L++      +   ++C V +E
Sbjct: 379 YVEWTNNGKTELNYKNTEPVLDSDGS-YFMYSKLRVEKKNWVERNSYSCSVVHE 431

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 38/202 (18%)

Query: 79  LGDTVRFQCSVTGQPAP-----WTSW-----------------SKDGKPATPNARVTIRE 116
           L D V   C++             +W                     +   P A V+   
Sbjct: 17  LNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWR 76

Query: 117 KEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD-PRAIISRPKVLNGLENL 174
            +     L +  + LE+AG Y  +V       + T +LE++  P + +   +V       
Sbjct: 77  LKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGM----- 131

Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ----VDSKENL--VIA 228
                +   + C+     P   +I+W +  +      ++  +V     + + +    V +
Sbjct: 132 ---KENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTS 188

Query: 229 RLKIPHVYPEDEGEFTCRVANE 250
            LK+     +    + C V + 
Sbjct: 189 CLKLNSSQEDPGTVYQCVVRHA 210

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 16/197 (8%)

Query: 63  TSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDL 120
           T  P  + +  +     G T    C V    P P T SW+     +  +    + +   L
Sbjct: 217 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGL 276

Query: 121 RFLEISEVTL----EDAGLYTIKVENNYGSVEATARLEIM-DPRAIISRPKVLNGLENLR 175
            +   S VT+         Y   V +   + +   R+E +  P   +  PK  + L    
Sbjct: 277 -YSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMI-- 333

Query: 176 CCDGDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233
                +    C V  V   D     +W+ +   +        E Q +S    V++ L + 
Sbjct: 334 ---SRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNST-YRVVSVLTVL 389

Query: 234 HVYPEDEGEFTCRVANE 250
           H    D  E+ C+V+N+
Sbjct: 390 HQNWLDGKEYKCKVSNK 406

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 19/201 (9%)

Query: 79  LGDTVRFQCSVT--------------GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
            G  V   C+ T              G       +    +P+    R +  +      L 
Sbjct: 14  PGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLA 73

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATAR-LEIMDPRAIISRPKVLNGLENLRCCD--GDS 181
           IS +  ED   Y     N+  +        ++       + P V   L      +   + 
Sbjct: 74  ISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVT--LFPPSSEELQANK 131

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
            T  C +    P    ++W  +   +K   +     +  + +    + L +     +   
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHR 191

Query: 242 EFTCRVANELGEVVTSACLIV 262
            ++C+V +E   V  +     
Sbjct: 192 SYSCQVTHEGSTVEKTVAPTE 212

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 19/198 (9%)

Query: 55  SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
           S ++        +    P +K+  +G  + F C    +         +      +     
Sbjct: 188 SPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVA 247

Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENL 174
            +  ++            +      V            +    P      P+       L
Sbjct: 248 IKIRNISV----------SASSGTNVVFTTEDNIFGTVIFAGYP---PDTPQ------QL 288

Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
            C   D     C                +  L++  S     ++          +L    
Sbjct: 289 NCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQM 348

Query: 235 VYPEDEGEFTCRVANELG 252
           +  ++   FT    N LG
Sbjct: 349 LPNQEIYNFTLNAHNPLG 366

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} Length = 512

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 44/263 (16%), Positives = 77/263 (29%), Gaps = 19/263 (7%)

Query: 4   PEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLT 63
           PE  +   S   T         +   + P +T          +            T+   
Sbjct: 230 PESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPE 289

Query: 64  SSPR------FYAVPHNKICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATPNARVTIR 115
                     +   P  +   L D   F C V G        +W   GK  T      + 
Sbjct: 290 CPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLL 349

Query: 116 EKE-DLRFLEISEVTL-----EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN 169
           E+  +    + S +TL           T  +  N+ S+     + + +P A       LN
Sbjct: 350 ERHSNGSQSQHSRLTLPRSLWNAGTSVTCTL--NHPSLPPQRLMALREPAAQAPVKLSLN 407

Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM--KPEVQVDSKENLVI 227
            L         +    C+V    P +  + W  + R +        +P  Q  S      
Sbjct: 408 LLA-SSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAW 466

Query: 228 ARLKIPHVYPEDEGEFTCRVANE 250
           + L++P         +TC V++E
Sbjct: 467 SVLRVPAPPSPQPATYTCVVSHE 489

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A Length = 475

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 28/199 (14%), Positives = 57/199 (28%), Gaps = 24/199 (12%)

Query: 68  FYAVPHNKICDLGDTVRFQCSVTG-QPAPWT--SWSKDGKPATPNARVTIREKEDLRFLE 124
               P  +   LG      C++TG + A     +W+     +               +  
Sbjct: 250 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQG--PPERDLCGCYSV 307

Query: 125 ISEVTL-----EDAGLYTIKVENNYGSVEATARL----EIMDPRAIISRPKVLNGLENLR 175
            S +            +T            TA L        P   +  P       N  
Sbjct: 308 SSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALN-- 365

Query: 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN----LVIARLK 231
               + VT  C  +   P D  + W + ++ +  +  +    + +  +      V + L+
Sbjct: 366 ----ELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILR 421

Query: 232 IPHVYPEDEGEFTCRVANE 250
           +     +    F+C V +E
Sbjct: 422 VAAEDWKKGDTFSCMVGHE 440

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 45.7 bits (107), Expect = 8e-06
 Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 18/202 (8%)

Query: 72  PHNKICDLGDTVRFQCSVT-----GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEIS 126
               I  LGD +   C +        P P   W    +      +  + +      + + 
Sbjct: 7   VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLP 66

Query: 127 EVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRC-CDGDSVTFE 185
            +    A L       N   +     L    P              NL C  +  + +  
Sbjct: 67  HLNHTQAFLSCSLNWGNSLQILDQVELRAGYP---------PAIPHNLSCLMNLTTSSLI 117

Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPE--VQVDSKENLVIARLKIPHVYPEDEGEF 243
           CQ +  P      S+   +   + +   + +  +    K+      +   H+        
Sbjct: 118 CQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGI 177

Query: 244 TCRVANELGEVVTSACLIVDVV 265
             +  N LG    S  L +D +
Sbjct: 178 WVQAENALG-TSMSPQLCLDPM 198

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 24/184 (13%), Positives = 48/184 (26%), Gaps = 17/184 (9%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYT 137
             +TV  QC             ++GK       +    +        I  +  + AG Y 
Sbjct: 20  SEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYR 78

Query: 138 IKVENNYGSVEATAR---LEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN 194
                 +   + +A    L+I+     +     L+         G+SVT  C       +
Sbjct: 79  CYGSVTHSPYQLSAPSDPLDIV--ITGLYEKPSLSAQPGPTVLAGESVTLSCS------S 130

Query: 195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254
                 +    L + + +          +     +   P       G + C  +      
Sbjct: 131 RSSYDMY---HLSR-EGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPY 186

Query: 255 VTSA 258
             S 
Sbjct: 187 EWSN 190

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFR--NNRLIKLDSDMKPEVQVDSKENLVI----ARLKI 232
           G +VT      + P N   ++WF   + ++++ DS      +   K  + +      L I
Sbjct: 19  GSNVTLNISESL-PENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77

Query: 233 PHVYPEDEGEFTCRVANELGEVVTS 257
             V  ED   +  RV  + G     
Sbjct: 78  SKVQKEDNSTYIMRVLKKTGNEQEW 102

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 17/103 (16%)

Query: 79  LGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRF------------LEI 125
            G  V    S +  +     +W                +  + +F            L I
Sbjct: 18  SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77

Query: 126 SEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKV 167
           S+V  ED   Y ++V    G   E   +L+++DP   + +P +
Sbjct: 78  SKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDP---VPKPVI 117

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 179 GDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
           G +    C V  +  ND +   SWF ++  +       PE Q +S     ++ L I    
Sbjct: 32  GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR-SVSELPIVERD 90

Query: 237 PEDEGEFTCRVANE 250
             +   F C+V + 
Sbjct: 91  WLNGKTFKCKVNSG 104

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 34/185 (18%), Positives = 57/185 (30%), Gaps = 22/185 (11%)

Query: 80  GDTVRFQCSVTG----QPAPWTSWSKDGKPATPNARVTIREKEDLRF-----LEISEVTL 130
           G T +  C V       P    SW  D             ++ +        L I E   
Sbjct: 32  GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDW 91

Query: 131 EDAGLYTIKVENNY--GSVEATARLEIMDPRAIISRPKVLN---GLENLRCCDGDSVTFE 185
            +   +  KV +      +E +       PR     P+V       E +       V+  
Sbjct: 92  LNGKTFKCKVNSGAFPAPIEKSISKPEGTPRG----PQVYTMAPPKEEM---TQSQVSIT 144

Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
           C V+   P D    W  N +  +   +  P +  D     + ++L +     +    FTC
Sbjct: 145 CMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYF-LYSKLNVKKETWQQGNTFTC 203

Query: 246 RVANE 250
            V +E
Sbjct: 204 SVLHE 208

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 179 GDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
           G      C +  +   +    +W  ++   K      PE  +    + V + L       
Sbjct: 19  GSEANLTCTLTGLRDASGVTFTWTPSSG--KSAVQGPPERDLCGCYS-VSSVLPGCAEPW 75

Query: 238 EDEGEFTCRVANE 250
                FTC  A  
Sbjct: 76  NHGKTFTCTAAYP 88

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 Length = 344

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            + V+  C V+   P+D  + W  N +         P +  D    L  ++L +     +
Sbjct: 257 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY-SKLTVDKSRWQ 315

Query: 239 DEGEFTCRVANE 250
               F+C V +E
Sbjct: 316 QGNVFSCSVMHE 327

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 17/172 (9%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYT 137
             +TV  QC             ++G        +    +        IS +T + AG Y 
Sbjct: 21  SEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79

Query: 138 IKVENNYGSVEATAR---LEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN 194
                 +   + +A    L+I+     +     L+         G++VT  C  +    +
Sbjct: 80  CYGSVTHSPYQVSAPSDPLDIV--IIGLYEKPSLSAQPGPTVLAGENVTLSCSSR---SS 134

Query: 195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
                  R                    +     +   P       G + C 
Sbjct: 135 YDMYHLSREGE-------AHERRLPAGPKVNGTFQADFPLGPATHGGTYRCF 179

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 179 GDSVTFECQVQVVPPNDHD---ISWFRNNR---LIKLDSDMKPEVQVDSKENLVIAR--- 229
           GDSVT  C +QV          ++W R+     +        P      +   V AR   
Sbjct: 15  GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74

Query: 230 ------LKIPHVYPEDEGEFTCRVAN-ELGEVVTSACLIV 262
                 L++  +  EDEG +TC       G       L V
Sbjct: 75  ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 24/112 (21%)

Query: 71  VPHNKICDLGDTVRFQCSVTGQPAP-----WTSWSKDGKPAT-----PNARVTIREKEDL 120
            P      LGD+V   C +             +W++ G+  +          +  E + L
Sbjct: 6   APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65

Query: 121 RF-------------LEISEVTLEDAGLYTIKVENN-YGSVEATARLEIMDP 158
            F             L +  + +ED G YT        GS      L ++  
Sbjct: 66  EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 13/140 (9%)

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
           L I  VT  D+G Y    ++     +A   L++    + +           ++      +
Sbjct: 85  LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVD--------VKGYKDGGI 136

Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
             EC+     P    I W  NN+   + +   P V        V A + +          
Sbjct: 137 HLECRSTGWYPQPQ-IQW-SNNKGENIPTVEAPVVADGVGLYAVAASVIMR---GSSGEG 191

Query: 243 FTCRVANELGEVVTSACLIV 262
            +C + + L  +  +A + +
Sbjct: 192 VSCTIRSSLLGLEKTASISI 211

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} Length = 218

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 157 DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMK 214
            P   I  P + + L         +    C V  V  +D D  ISWF NN  +       
Sbjct: 9   GPSVFIFPPNIKDVL-----MISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT 63

Query: 215 PEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
                +S    V++ L I H       EF C+V N+
Sbjct: 64  HREDYNSTIR-VVSTLPIQHQDWMSGKEFKCKVNNK 98

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} Length = 218

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 18/183 (9%)

Query: 80  GDTVRFQCSVTG-QPAPWT---SWSKDGKPATPNARVTIREKEDLRFLEISEVTL----- 130
             T +  C V            SW  +          T RE  +     +S + +     
Sbjct: 26  SLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW 85

Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV---LNGLENLRCCDGDSVTFECQ 187
                +  KV      + +     I   + ++  P+V       E L       V+  C 
Sbjct: 86  MSGKEFKCKVN--NKDLPSPIERTISKIKGLVRAPQVYILPPPAEQL---SRKDVSLTCL 140

Query: 188 VQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
           V    P D  + W  N    +   D  P +  D    +  ++L +     E    F+C V
Sbjct: 141 VVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIY-SKLNMKTSKWEKTDSFSCNV 199

Query: 248 ANE 250
            +E
Sbjct: 200 RHE 202

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} Length = 231

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 25/191 (13%), Positives = 59/191 (30%), Gaps = 22/191 (11%)

Query: 79  LGDTVRFQCSVTGQPAP---WTSWSKDGKPATPNARVTIREKEDLRF-----LEISEVTL 130
           +    + +C V   P+      +W+++         + ++E  +  +     + +S    
Sbjct: 27  ISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDW 86

Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN-GLENLRCCDGDSVTFECQVQ 189
                +T  V++    +  +  +                   E L       VT  C V+
Sbjct: 87  LSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEEL---SLSRVTLSCLVR 143

Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL----------VIARLKIPHVYPED 239
              P D +I W R++R +     +   V  + +             V +++ +       
Sbjct: 144 GFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNG 203

Query: 240 EGEFTCRVANE 250
              F C   +E
Sbjct: 204 GTVFACMAVHE 214

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens} Length = 111

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL---DSDMKPEVQV 219
           S    +NG+       G+SVTF   +Q        I+W     +  +   DS+  P V V
Sbjct: 4   SEIFTVNGIL------GESVTFPVNIQEPRQVKI-IAWTSKTSVAYVTPGDSETAPVVTV 56

Query: 220 DS---KENLVI----ARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
                 E +        L I  +  ED G++   +  +     T+
Sbjct: 57  THRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTT 101

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... Length = 207

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 179 GDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
             +    C V  V   D +   +W+ +   +        E Q +S    V++ L + H  
Sbjct: 18  SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR-VVSVLTVLHQD 76

Query: 237 PEDEGEFTCRVANE 250
             +  E+ C+V+N+
Sbjct: 77  WLNGKEYKCKVSNK 90

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 34/183 (18%), Positives = 57/183 (31%), Gaps = 16/183 (8%)

Query: 79  LGDTVRFQCSVTG-QPAPWT---SWSKDGKPATPNARVTIREKEDLRF-----LEISEVT 129
           +  T +  C V            SW  D             E+ +  F     L I    
Sbjct: 17  ITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQD 76

Query: 130 LEDAGLYTIKVENNY--GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQ 187
             +   +  +V +      +E T       P+A    P+V            D V+  C 
Sbjct: 77  WLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKA----PQVYTLPPPKEQMAKDKVSLTCM 132

Query: 188 VQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
           +    P D  + W  N +  +   + +P +  D     V ++L +     E    FTC V
Sbjct: 133 ITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYF-VYSKLNVQKSNWEAGNTFTCSV 191

Query: 248 ANE 250
            +E
Sbjct: 192 LHE 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.98
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.98
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.98
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.97
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.97
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.97
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.97
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.97
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.96
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.96
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.96
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.96
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.96
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.96
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.96
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.96
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.96
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.96
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.96
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.95
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.95
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.95
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.95
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.95
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.95
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.95
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.95
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.95
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.95
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.95
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.95
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.95
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.94
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.94
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.94
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.94
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.94
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.94
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.94
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.94
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.94
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.94
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.94
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.94
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.93
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.93
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.93
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.93
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.93
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.93
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.93
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.93
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.93
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.92
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.92
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.92
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.92
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.92
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.92
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.92
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.91
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.91
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.91
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.91
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.91
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.91
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.91
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.91
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.91
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.91
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.91
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.91
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.9
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.9
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.9
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.9
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.9
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.9
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.9
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.9
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.9
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.9
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.9
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.9
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.89
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.89
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.89
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.89
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.89
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.89
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.89
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.89
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.89
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.89
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.88
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.88
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.88
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.88
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.88
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.88
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.88
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.87
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.87
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.87
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.87
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.87
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.87
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.87
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.87
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.87
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.87
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.87
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.86
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.86
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.86
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.86
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.86
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.86
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.86
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.86
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.86
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.86
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.86
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.86
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.86
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.86
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.86
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.85
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.85
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.85
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.85
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.85
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.85
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.85
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.85
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.85
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.84
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.84
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.84
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.84
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.84
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.84
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.84
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.84
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.84
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.84
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.83
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.83
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.83
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.83
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.83
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.83
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.83
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.83
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.83
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.83
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.83
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.83
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.83
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.83
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.83
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.83
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.83
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.83
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.82
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.82
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.82
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.82
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.82
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.82
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.82
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.81
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.81
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.81
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.81
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.81
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.8
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.8
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.8
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.8
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.8
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.8
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.79
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.79
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.79
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.79
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.79
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.79
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.79
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.79
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.78
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.78
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.78
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.78
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.78
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.77
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.77
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.76
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.76
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.76
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.76
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.76
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.76
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.75
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.75
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.74
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.74
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.74
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.74
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.74
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.74
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.73
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.73
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.73
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.73
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.73
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.73
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.73
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.73
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.73
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.73
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.73
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.72
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.72
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.72
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.71
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.71
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.71
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.7
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.7
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.7
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.7
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.69
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.69
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.69
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.69
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.68
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.68
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.68
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.68
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.67
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.67
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.67
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.67
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.66
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.66
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.66
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.66
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.66
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.66
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.66
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.65
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.65
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.65
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.65
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.65
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.64
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.64
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.64
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.64
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.64
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.64
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.64
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.63
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.63
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.63
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.63
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.63
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.63
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.63
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.62
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.62
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.61
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.61
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.61
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.61
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.61
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.61
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.61
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.61
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.6
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.6
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.6
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.6
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.6
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.59
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.59
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.59
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.59
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.59
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.59
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.59
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.59
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.58
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.58
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.58
1he7_A	126	High affinity nerve growth factor receptor; transf	99.58
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.58
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.58
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.57
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.57
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.57
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.56
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.56
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.56
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.56
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.56
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.55
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.55
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.55
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.55
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.55
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.55
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.55
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.55
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.55
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.55
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.55
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.55
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.55
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.55
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.54
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.54
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.54
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.54
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.54
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.54
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.54
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.53
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.53
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.53
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.53
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.53
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.52
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.52
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.52
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.52
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.52
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.52
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.52
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.52
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.52
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.52
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.51
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.51
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.51
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.51
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.51
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.51
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.51
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.51
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.51
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.5
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.5
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.5
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.5
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.5
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.5
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.5
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.5
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.5
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.5
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.5
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.5
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.49
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.49
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.49
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.49
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.49
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.48
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.48
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.48
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.48
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.48
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.47
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.47
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.47
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.47
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.47
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.46
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.45
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.45
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.45
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.45
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.44
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.44
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.44
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.43
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.43
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.43
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.43
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.43
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.43
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.43
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.43
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.43
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.43
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.42
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.42
1he7_A	126	High affinity nerve growth factor receptor; transf	99.42
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.42
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.42
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.42
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.41
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.41
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.41
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.41
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.41
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.4
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.4
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.4
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.4
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.4
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.39
2ens_A	96	Advanced glycosylation END product-specific recept	99.39
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.39
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.39
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.39
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.39
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.38
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.38
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.38
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.37
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.37
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.37
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.36
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.36
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.35
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.34
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.34
2ens_A	96	Advanced glycosylation END product-specific recept	99.34
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.33
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.33
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.33
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.33
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.33
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.33
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.32
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.32
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.32
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.32
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.32

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=8.6e-41  Score=301.07  Aligned_cols=304  Identities=22%  Similarity=0.310  Sum_probs=237.2

Q ss_pred             eeeecccCCCCcccCCC----CCCCCCCCCCcccCCCCCCCcccccccccccc-----ccc---CCCCeeEecCCceEec
Q psy1095          11 LSVKLTRPSGLMSGHST----PRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRL---TSSPRFYAVPHNKICD   78 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~---~~~p~~~~~~~~~~v~   78 (325)
                      ..++|.+++..+.....    ......+|.|.+++.+|+|.|+|.+.|..+..     ..+   ..+|.+...+.+..+.
T Consensus        35 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~  114 (570)
T 3b43_A           35 IRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHET  114 (570)
T ss_dssp             CEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEE
T ss_pred             CEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCeEec
Confidence            35788888877654322    11223568899999999999999998865432     111   2477777777788888


Q ss_pred             CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095          79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      +|+++.|.|.+.|.|.+.++|+|++..+....++..........|.|.++..+|+|.|+|.+.|..|.......+.|...
T Consensus       115 ~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  194 (570)
T 3b43_A          115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH  194 (570)
T ss_dssp             TTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCC
Confidence            99999999999999999999999999998777766555556678999999999999999999999998877777777653


Q ss_pred             CcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCC
Q psy1095         159 RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE  238 (325)
Q Consensus       159 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  238 (325)
                         ..+|.+...+....+.+|+.+.|.|.+.|.|+  +.+.|++++..+..+......  ..+    ....|.|.+++.+
T Consensus       195 ---~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~--p~i~W~k~g~~i~~~~~~~~~--~~~----~~~~L~i~~v~~~  263 (570)
T 3b43_A          195 ---EVPPFFDLKPVSVDLALGESGTFKCHVTGTAP--IKITWAKDNREIRPGGNYKMT--LVE----NTATLTVLKVTKG  263 (570)
T ss_dssp             ---CCCCEEEECCCCBCCBSBSCEEEEEEEESSSC--CEEEEEETTEECCTTSSEEEE--EET----TEEEEEESSBCGG
T ss_pred             ---CCCCccccCCceeEecCCCeEEEEEEEEECCC--CEEEEEECCEECcCCCcEEEE--EEC----CEEEEEEcccCcc
Confidence               23466666666777889999999999999887  899999999988765544333  211    2368999999999


Q ss_pred             CCeEEEEEEEeCCCcEEeEEEEEEEe-------------------------------------eCCeecCCCCceEEEEe
Q psy1095         239 DEGEFTCRVANELGEVVTSACLIVDV-------------------------------------VKGKDLTSDGRLNIITV  281 (325)
Q Consensus       239 d~G~Y~C~~~~~~~~~~~~~~l~v~~-------------------------------------~~~~~~~~~~~~~~~~~  281 (325)
                      |+|.|+|.|.|..|.....+.|.|..                                     +.+..+..+.+......
T Consensus       264 D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~  343 (570)
T 3b43_A          264 DAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV  343 (570)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEE
T ss_pred             cCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEE
Confidence            99999999999998877766665532                                     22222223333344445


Q ss_pred             CCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccCC
Q psy1095         282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII  325 (325)
Q Consensus       282 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~i  325 (325)
                      +....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.|
T Consensus       344 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~  387 (570)
T 3b43_A          344 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF  387 (570)
T ss_dssp             TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEE
T ss_pred             CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCee
Confidence            55678999999999999999999999999999999999988853

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.1e-40  Score=300.30  Aligned_cols=301  Identities=23%  Similarity=0.371  Sum_probs=236.8

Q ss_pred             eeeecccCCCCcccCCCC----CCCCCCCCCcccCCCCCCCcccccccccccc-----cc---cCCCCeeEecCCceEec
Q psy1095          11 LSVKLTRPSGLMSGHSTP----RSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RR---LTSSPRFYAVPHNKICD   78 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~---~~~~p~~~~~~~~~~v~   78 (325)
                      +.++|.+++..+......    .....+|.|.+++.+|+|.|+|.+.|..+..     ..   ...||.+...|....+.
T Consensus       131 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~  210 (570)
T 3b43_A          131 LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLA  210 (570)
T ss_dssp             CEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCB
T ss_pred             CEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEec
Confidence            467888887766543221    1123568899999999999999998765432     11   23578888888888899


Q ss_pred             CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095          79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      +|+++.|.|.+.|.|.+.++|+|++..+....++.+........|.|.+++.+|+|.|+|.+.|..|.....+.|.|..+
T Consensus       211 ~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~  290 (570)
T 3b43_A          211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP  290 (570)
T ss_dssp             SBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCC
T ss_pred             CCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecC
Confidence            99999999999999999999999999998877777766666678999999999999999999999998888888887664


Q ss_pred             CcccCCCeeeecCc-CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         159 RAIISRPKVLNGLE-NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       159 ~~~~~~p~~~~~~~-~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                            |.+..... ...+.+|+.+.|.|.+.|.|.  +.+.|++++..+.........  ..+    ....|.|.+++.
T Consensus       291 ------p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~--p~v~W~k~~~~l~~~~~~~~~--~~~----~~~~L~i~~v~~  356 (570)
T 3b43_A          291 ------PRFIKKLEPSRIVKQDEHTRYECKIGGSPE--IKVLWYKDETEIQESSKFRMS--FVE----SVAVLEMYNLSV  356 (570)
T ss_dssp             ------CEEEECCCSBCCEESSCEEEEEEEEESSSS--CEEEEEETTEECCCSSSEEEE--EET----TEEEEEEESCCG
T ss_pred             ------CcccccCCCccEEcCCCcEEEEEEEeeCCC--CEEEEeECCEECCCCCcEEEE--EEC----CEEEEEECCCCc
Confidence                  44444332 345789999999999999988  899999999998766544332  222    246899999999


Q ss_pred             CCCeEEEEEEEeCCCcEEeEEEEEEEee------------------------------------CCeecCCCCceEEEEe
Q psy1095         238 EDEGEFTCRVANELGEVVTSACLIVDVV------------------------------------KGKDLTSDGRLNIITV  281 (325)
Q Consensus       238 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~------------------------------------~~~~~~~~~~~~~~~~  281 (325)
                      +|+|.|+|.|.|..|.....+.|.|...                                    .+..+..+.+..+...
T Consensus       357 ~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~  436 (570)
T 3b43_A          357 EDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE  436 (570)
T ss_dssp             GGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEE
T ss_pred             ccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEc
Confidence            9999999999999998887777776322                                    2222223334444445


Q ss_pred             CCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccCC
Q psy1095         282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII  325 (325)
Q Consensus       282 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~i  325 (325)
                      +....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.|
T Consensus       437 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~  480 (570)
T 3b43_A          437 NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF  480 (570)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEE
T ss_pred             CCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcc
Confidence            55568999999999999999999999999999999999988853

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=5.4e-38  Score=271.30  Aligned_cols=300  Identities=22%  Similarity=0.298  Sum_probs=217.3

Q ss_pred             eeeecccCCCCcccCCCC---CCCCCCCCCccc-----CCCCCCCcccccccccc-------cccccCCCCeeEecCCce
Q psy1095          11 LSVKLTRPSGLMSGHSTP---RSTPRSTPPRSI-----SPLSSRTFTPYSLNSAI-------RTRRLTSSPRFYAVPHNK   75 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~v-----~~~d~G~Y~c~~~~~~~-------~~~~~~~~p~~~~~~~~~   75 (325)
                      ..+.|.+++..+......   .....++.|.++     +.+|+|.|+|.+.+...       ....+..+|.+...+...
T Consensus        52 ~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~  131 (403)
T 3laf_A           52 PVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESI  131 (403)
T ss_dssp             CEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCE
T ss_pred             ceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcE
Confidence            357788877766543211   122344555555     88899999999975322       123444678888888888


Q ss_pred             EecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC---CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEE
Q psy1095          76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP---NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATA  151 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~  151 (325)
                      .+.+|+++.|.|.+.+.|.+.+.|++++..+..   ..+.....   ...|.|.+++.+|+|.|+|.+.|..+.. ....
T Consensus       132 ~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~  208 (403)
T 3laf_A          132 TAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP---SGALQISRLQPGDSGVYRCSARNPASTRTGNEA  208 (403)
T ss_dssp             EEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECT---TSCEEECSCCGGGCEEEEEEEECSSCCCBCCCE
T ss_pred             EEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcC---CceEEEcccccccCEEEEEEEEcCCCceeccce
Confidence            899999999999999999999999999988743   23333322   2359999999999999999999876643 3456


Q ss_pred             EEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEE
Q psy1095         152 RLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       152 ~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (325)
                      .+.|...+.....+.+...+....+.+|+.+.|.|.+.+.|+  +.+.|++++..+.........  ..+      ..|.
T Consensus       209 ~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~~~~~~~~--~~~------~~L~  278 (403)
T 3laf_A          209 EVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP--PSFTWLRGEEVIQLRSKKYSL--LGG------SNLL  278 (403)
T ss_dssp             EEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESC--CEEEEEETTEECCCSSSSEEE--ETT------TEEE
T ss_pred             eEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCC--CeEEEEECCeeccCCCceEEE--CCc------cEEE
Confidence            677776654433344555666677889999999999999888  899999999887644332211  222      3799


Q ss_pred             eCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCee-------cCCCCce-------------EEEEeC---------
Q psy1095         232 IPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD-------LTSDGRL-------------NIITVG---------  282 (325)
Q Consensus       232 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~-------------~~~~~~---------  282 (325)
                      |.+++.+|+|.|+|.|.|..+.....+.|.|...+...       +..+..+             ..+..+         
T Consensus       279 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~  358 (403)
T 3laf_A          279 ISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDY  358 (403)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSS
T ss_pred             EeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCc
Confidence            99999999999999999999988888888775432111       1111100             011111         


Q ss_pred             ----CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         283 ----GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       283 ----~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                          ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|+++|
T Consensus       359 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          359 FQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             EEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             EEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence                12369999999999999999999999999999999999876

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1.5e-35  Score=243.92  Aligned_cols=245  Identities=25%  Similarity=0.452  Sum_probs=198.4

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..||.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+....++.+....+...|.|.+++..|+|.|+|.+.|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            36899999999999999999999999999999999999999999887777776666778899999999999999999999


Q ss_pred             CCeeEEEEEEEEEECCCcccCCCeeeecC-cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         143 NYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~~~~~~p~~~~~~-~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      ..+.....+.|.|..+      |.+.... ....+..|+.+.|.|.+.+.|.  +.+.|++++..+.........  ..+
T Consensus        83 ~~g~~~~~~~l~V~~~------p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~--~~v~W~~~~~~~~~~~~~~~~--~~~  152 (284)
T 2rik_A           83 VAGKDSCSAQLGVQEP------PRFIKKLEPSRIVKQDEHTRYECKIGGSPE--IKVLWYKDETEIQESSKFRMS--FVE  152 (284)
T ss_dssp             TTEEEEEEEEEEEECC------CEEEECCCSEEEEETTCCEEEEEEEESSSC--CEEEEEETTEECCCSSSEEEE--EET
T ss_pred             CCceEEEEEEEEccCC------CcccccCCCceEecCCceEEEEEEEeeeCC--CEEEEEECCEECcCCCcEEEE--EcC
Confidence            9888888888888775      4443333 2346789999999999998887  899999999988765543332  222


Q ss_pred             CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeC-----------------------------------
Q psy1095         222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK-----------------------------------  266 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~-----------------------------------  266 (325)
                          ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+                                   
T Consensus       153 ----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~  228 (284)
T 2rik_A          153 ----SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK  228 (284)
T ss_dssp             ----TEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEE
T ss_pred             ----CEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEE
Confidence                24689999999999999999999999988887777774322                                   


Q ss_pred             -CeecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         267 -GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       267 -~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                       +..+..+.+..+...+....|.|.++..+|+|.|+|.|.|..|..+.++.|.|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          229 DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA  284 (284)
T ss_dssp             TTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             CCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence             1111122223333344456899999999999999999999999999999999874

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=5.5e-36  Score=267.43  Aligned_cols=302  Identities=18%  Similarity=0.151  Sum_probs=217.3

Q ss_pred             eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCcccccccccc--cccccCCCCeeEecCCceEecCCCeEEEEEEE
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAI--RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSV   89 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~--~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~   89 (325)
                      .++|.+++..++    ......+|.|.+++.+|+|.|+|.+.++..  ..+.+..||.+...+....+.+|+.+.|.|.+
T Consensus        63 ~v~W~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~ng~~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~  138 (524)
T 2ec8_A           63 FVKWTFEILDET----NENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPL  138 (524)
T ss_dssp             EEEEEEESSSCC----EEECSSEEEESSCCSTTCEEEEEEETTSCEEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCB
T ss_pred             eEEEcCCCcccc----ccCccceEEEcccchhhCEEEEEeecCCcceEEEEEECCCCcccccccceEEEcCCeEEEECcC
Confidence            467888887663    233456899999999999999999988321  22344466666667777889999999999999


Q ss_pred             EecCCCeeEEee-CCeeCCCCCcEEEEecCCeEEEEEccCCCCCCe-EEEEEEEeCCeeE-EEEEEEEEECCCcccCCCe
Q psy1095          90 TGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTLEDAG-LYTIKVENNYGSV-EATARLEIMDPRAIISRPK  166 (325)
Q Consensus        90 ~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~  166 (325)
                      .+.+.+.+.|++ ++..+....++......   .|.|.+++.+|+| .|+|.+.+..+.. ...+.|.|...+  ..+|.
T Consensus       139 ~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~--~~~p~  213 (524)
T 2ec8_A          139 TDPEVTNYSLKGCQGKPLPKDLRFIPDPKA---GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAF--KAVPV  213 (524)
T ss_dssp             SCCCCSCEEEECSSSCCCCSSCEEEEETTT---EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCC--CSCCE
T ss_pred             CCCccceEEEEccCCcCcCCCCceeECCCc---cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCC--CCCCc
Confidence            887778999998 78888766666554333   5999999999999 9999998876544 235667776321  13577


Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      +...+....+.+|+.+.|.|.+.+.|.+ ..+.|++++..+.........  ..+ ........|.|.+++.+|+|.|+|
T Consensus       214 i~~~~~~~~v~~G~~v~L~C~~~g~p~p-~~i~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  290 (524)
T 2ec8_A          214 VSVSKASYLLREGEEFTVTCTIKDVSSS-VYSTWKRENSQTKLQEKYNSW--HHGDFNYERQATLTISSARVNDSGVFMC  290 (524)
T ss_dssp             EECSCSEEEEETTSCEEEEEEEEESSTT-CEEEEEETTCSCCCCEEEEEE--ECSSSCEEEEEEEEESSCCTTTCEEEEE
T ss_pred             EEecCCcceEEcCCcEEEEEEEecCCCc-EEEEEEeCCCCCccccccccc--cccCCccceEEEEEECCCCHHHCEEEEE
Confidence            7777777789999999999999998872 349999998773111110001  111 122345799999999999999999


Q ss_pred             EEEeCCCcEEeEEEEEEEeeCCee----------cCCCC--------------c-eEEE---------------EeC---
Q psy1095         246 RVANELGEVVTSACLIVDVVKGKD----------LTSDG--------------R-LNII---------------TVG---  282 (325)
Q Consensus       246 ~~~~~~~~~~~~~~l~v~~~~~~~----------~~~~~--------------~-~~~~---------------~~~---  282 (325)
                      .|.|..|.....+.|.|...+...          +..+.              . +...               ..+   
T Consensus       291 ~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~  370 (524)
T 2ec8_A          291 YANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESN  370 (524)
T ss_dssp             EEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSC
T ss_pred             EEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCC
Confidence            999999988887777774322110          11000              1 1110               001   


Q ss_pred             --CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccCC
Q psy1095         283 --GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII  325 (325)
Q Consensus       283 --~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~i  325 (325)
                        ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.|
T Consensus       371 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i  415 (524)
T 2ec8_A          371 IRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI  415 (524)
T ss_dssp             CEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEE
T ss_pred             ceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeE
Confidence              2358999999999999999999999999999999999998864

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=4.3e-35  Score=261.65  Aligned_cols=306  Identities=14%  Similarity=0.165  Sum_probs=204.7

Q ss_pred             ceeeeccc-CCCCcccCCCC-CCCCCCCCCcccCCCCCC-Ccccccccccccc------ccc----CCCCeeEecCCceE
Q psy1095          10 SLSVKLTR-PSGLMSGHSTP-RSTPRSTPPRSISPLSSR-TFTPYSLNSAIRT------RRL----TSSPRFYAVPHNKI   76 (325)
Q Consensus        10 ~~~~~~~~-~~~~~~~~~~~-~~~~~~l~i~~v~~~d~G-~Y~c~~~~~~~~~------~~~----~~~p~~~~~~~~~~   76 (325)
                      ...+.|-+ ++..+...... ......|.|.+++.+|+| .|+|.+.+.....      +.+    ..+|.+...|....
T Consensus       143 ~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~  222 (524)
T 2ec8_A          143 VTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYL  222 (524)
T ss_dssp             CSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEE
T ss_pred             cceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcce
Confidence            35677855 44444332211 122457889999999999 9999998754322      222    36888888888888


Q ss_pred             ecCCCeEEEEEEEEecCCCe-eEEeeCCeeC--CCCCcEEEEe---cCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEE
Q psy1095          77 CDLGDTVRFQCSVTGQPAPW-TSWSKDGKPA--TPNARVTIRE---KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT  150 (325)
Q Consensus        77 v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~--~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  150 (325)
                      +.+|+++.|.|.+.+.|.+. +.|++++..+  ....+.....   ......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus       223 v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~  302 (524)
T 2ec8_A          223 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT  302 (524)
T ss_dssp             EETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEE
T ss_pred             EEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEE
Confidence            99999999999999988886 9999999874  3222222211   1224679999999999999999999999988888


Q ss_pred             EEEEEECCCcccCCCeeeecC---cCeeEecCCcEEEEEEEEecCCCCCe-eEEeeCCEEeccCCCCceEEEecCCccee
Q psy1095         151 ARLEIMDPRAIISRPKVLNGL---ENLRCCDGDSVTFECQVQVVPPNDHD-ISWFRNNRLIKLDSDMKPEVQVDSKENLV  226 (325)
Q Consensus       151 ~~l~v~~~~~~~~~p~~~~~~---~~~~v~~g~~v~l~C~~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (325)
                      +.|.|..+      |.+...+   ....+.+|+.+.|.|.+.+.|.  +. +.|++++..+...... ......+..+..
T Consensus       303 ~~l~V~~~------p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~--p~~v~W~k~g~~~~~~~~~-~~~~~~~~~~~~  373 (524)
T 2ec8_A          303 TTLEVVDK------GFINIFPMINTTVFVNDGENVDLIVEYEAFPK--PEHQQWIYMNRTFTDKWED-YPKSENESNIRY  373 (524)
T ss_dssp             EEEEEESS------CEEEEEESSCSEEEECTTCCEEEEEEEEEESC--CCEEEEESSSCBCSSSBCC-EESCCSSSCCEE
T ss_pred             EEEEEecc------CceEeecCCCceEEEcCCCcEEEEEEEeecCC--CcEEEEEECCeeccCCccc-eeEEccCCCcee
Confidence            88999876      3333322   3467889999999999999998  77 9999999887654421 111111112334


Q ss_pred             EEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeec---------C--------------CC-Cce------
Q psy1095         227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDL---------T--------------SD-GRL------  276 (325)
Q Consensus       227 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~---------~--------------~~-~~~------  276 (325)
                      .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+....         .              .+ +..      
T Consensus       374 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~~~~g~l~C~~~g~P~p~i~W~~~~~~~~~~~~~  453 (524)
T 2ec8_A          374 VSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSAS  453 (524)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEECCSSSCEEEEEEEESCCEEECCCC----------
T ss_pred             EEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeecccCcCcEEEEEEEeecCCEEEEEECCCcccccccc
Confidence            57999999999999999999999999988888887743321100         0              11 100      


Q ss_pred             ----------EEEEeCCEE-E-EEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         277 ----------NIITVGGTS-V-LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       277 ----------~~~~~~~~~-~-l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                                .....++.. . ..+.....+|+|.|+|.|.|..|..+..+.|.|+++|.
T Consensus       454 ~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~  513 (524)
T 2ec8_A          454 VLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNK  513 (524)
T ss_dssp             CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-----
T ss_pred             cCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCH
Confidence                      000011111 1 12444446999999999999999999999999988763

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=4.2e-35  Score=260.26  Aligned_cols=298  Identities=10%  Similarity=0.087  Sum_probs=183.3

Q ss_pred             eeeecccCCCCcccCCCCCCCCC---CCCCcccCCCCCCCccccccccccccc---ccCCCCeeEec-CCceEecCCCeE
Q psy1095          11 LSVKLTRPSGLMSGHSTPRSTPR---STPPRSISPLSSRTFTPYSLNSAIRTR---RLTSSPRFYAV-PHNKICDLGDTV   83 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~Y~c~~~~~~~~~~---~~~~~p~~~~~-~~~~~v~~g~~v   83 (325)
                      ++.+|-..+..+..........+   +|.|.+++.+|+|.|+|.+.+..+...   .+..+|.+... ..+.....|+.+
T Consensus        78 ~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~~~~~~~~~~p~~~~~~~~~  157 (527)
T 3qs9_E           78 ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD  157 (527)
T ss_dssp             CEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECSSSS
T ss_pred             eeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEECCceeeccCCCcEEecCCce
Confidence            45666655554333222322233   388999999999999999987655321   12222222212 223334567888


Q ss_pred             EEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEE-EEEEEECCCccc
Q psy1095          84 RFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT-ARLEIMDPRAII  162 (325)
Q Consensus        84 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~v~~~~~~~  162 (325)
                      .|.|.+.|.|.|.++|++++..+......    ...........+...|+|.|+|.+.|..|..... +.|.|...+.  
T Consensus       158 ~L~C~a~G~P~P~i~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~--  231 (527)
T 3qs9_E          158 ALVCISESVPEPIVEWVLCDSQGESCKEE----SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ--  231 (527)
T ss_dssp             CEEEEEEESSCCEEEEEEC-----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCC--
T ss_pred             EEEEEEceecCCeEEEEECCCCCcccccc----CCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCc--
Confidence            99999999999999999988765321100    0111112233456889999999999998866543 5666654422  


Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG  241 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  241 (325)
                          +  .+....+.+|+.+.|.|.+. +.|.  +.+.|++++..+.............+........|.|.+++.+|+|
T Consensus       232 ----~--~p~~~~v~~G~~v~L~C~~~~g~p~--p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG  303 (527)
T 3qs9_E          232 ----T--TLPQLFLKVGEPLWIRCKAVHVNHG--FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG  303 (527)
T ss_dssp             ----C--SCCEEEECTTSCEEEEEEEEESSSC--CCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCE
T ss_pred             ----c--CCCceEEeCCCeEEEEEEEccCCCC--eEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCe
Confidence                1  23356788999999999997 6776  8999999998765432221111111111223467999999999999


Q ss_pred             EEEEEEEeCCCcEEeEEEEEEEeeCCeec---------CCCCce------------E-EEEeC------------CEEEE
Q psy1095         242 EFTCRVANELGEVVTSACLIVDVVKGKDL---------TSDGRL------------N-IITVG------------GTSVL  287 (325)
Q Consensus       242 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~---------~~~~~~------------~-~~~~~------------~~~~l  287 (325)
                      .|+|.|.|.   ....+.|.|...+...+         ..+...            . .+..+            +...|
T Consensus       304 ~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L  380 (527)
T 3qs9_E          304 YYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSI  380 (527)
T ss_dssp             EEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEE
T ss_pred             EEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEE
Confidence            999999987   55566666643221111         101100            0 11111            13479


Q ss_pred             EEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccCC
Q psy1095         288 TIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII  325 (325)
Q Consensus       288 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~i  325 (325)
                      .|.++..+|+|.|+|.|.|..|.....+.|.|..+|.|
T Consensus       381 ~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i  418 (527)
T 3qs9_E          381 SKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV  418 (527)
T ss_dssp             EEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEE
T ss_pred             EEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeE
Confidence            99999999999999999999999999999999998864

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.2e-33  Score=231.66  Aligned_cols=251  Identities=24%  Similarity=0.413  Sum_probs=175.7

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEe-c-CCeEEEEEccCCC-CCCeEEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE-K-EDLRFLEISEVTL-EDAGLYTIK  139 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~-~~~~~l~i~~~~~-~d~G~Y~C~  139 (325)
                      ..+|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|++++..+... ++.... . +....|.|.+++. +|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            46899999999999999999999999999999999999999888654 443332 2 3347899999998 999999999


Q ss_pred             EEeCCeeEEEEEEEEEECCCccc-CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEE
Q psy1095         140 VENNYGSVEATARLEIMDPRAII-SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ  218 (325)
Q Consensus       140 ~~~~~~~~~~~~~l~v~~~~~~~-~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  218 (325)
                      +.|..+.....+.|.|...+... ..|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+...........
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~k~~~~~~~~~~~~~~~~  160 (304)
T 2yd9_A           83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD--PEITWFKDFLPVDPSASNGRIKQ  160 (304)
T ss_dssp             EECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSC--CEEEEEETTEECCGGGGTTSEEE
T ss_pred             EECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCC--CeEEEEECCEECcCCCCcceEEe
Confidence            99998887778888888653321 2266676667778899999999999999887  89999999988765422111111


Q ss_pred             ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE-EEEEEEeeC--Ce--------ecCCCCceE----------
Q psy1095         219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS-ACLIVDVVK--GK--------DLTSDGRLN----------  277 (325)
Q Consensus       219 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~v~~~~--~~--------~~~~~~~~~----------  277 (325)
                      ...      ..|.|.+++.+|+|.|+|.|.|..|..... +.|.|....  +.        .+..+..+.          
T Consensus       161 ~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~  234 (304)
T 2yd9_A          161 LRS------GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPM  234 (304)
T ss_dssp             CTT------SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESC
T ss_pred             CCC------eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCC
Confidence            111      379999999999999999999998866533 444442211  10        011111111          


Q ss_pred             ---EEEeC------------CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         278 ---IITVG------------GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       278 ---~~~~~------------~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                         .+..+            +...|.|.++  +|+|.|+|.|.|..|..+.++.|.|++++.
T Consensus       235 p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  294 (304)
T 2yd9_A          235 PYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPK  294 (304)
T ss_dssp             CEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred             CEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence               11111            2335777766  689999999999999999999999998875

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.3e-34  Score=248.57  Aligned_cols=292  Identities=20%  Similarity=0.212  Sum_probs=195.0

Q ss_pred             eeecccCCCCcccCC--CCCCCCCCCCCccc-CCCCCCCccccccccccccccc------CCCCeeE-ecCCceEecCCC
Q psy1095          12 SVKLTRPSGLMSGHS--TPRSTPRSTPPRSI-SPLSSRTFTPYSLNSAIRTRRL------TSSPRFY-AVPHNKICDLGD   81 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~--~~~~~~~~l~i~~v-~~~d~G~Y~c~~~~~~~~~~~~------~~~p~~~-~~~~~~~v~~g~   81 (325)
                      .++|.+++..+....  .......+|.|.++ +.+|+|.|+|.+.|..+.....      ...+.+. ..+....+.+|+
T Consensus        39 ~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~  118 (384)
T 3kld_A           39 HIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQ  118 (384)
T ss_dssp             EEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETC
T ss_pred             EEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCC
Confidence            577888777664332  11222446677776 7899999999998876543211      1122221 223446788999


Q ss_pred             eEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE---EEEEEEEC
Q psy1095          82 TVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA---TARLEIMD  157 (325)
Q Consensus        82 ~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~---~~~l~v~~  157 (325)
                      .+.|.|... +.|.+.+.|++++.++....+......  ...|.|.+++.+|+|.|+|.+.|..+....   ...+.+..
T Consensus       119 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~  196 (384)
T 3kld_A          119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQE--TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRN  196 (384)
T ss_dssp             CEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTT--TCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEE
T ss_pred             CeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcC--CCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEcc
Confidence            999999753 467789999999988765544433222  235999999999999999999997654321   11222211


Q ss_pred             CC-cccCCCeee-ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE-EeccCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         158 PR-AIISRPKVL-NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR-LIKLDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       158 ~~-~~~~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      .. .....|.+. ..+....+.+|+.+.|.|.+.|.|.  +.+.|++++. .+....    .....      ...|.|.+
T Consensus       197 ~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~~~~~~~~~~----~~~~~------~~~L~I~~  264 (384)
T 3kld_A          197 DGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV--PTILWRRADGKPIARKA----RRHKS------NGILEIPN  264 (384)
T ss_dssp             EEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESC--CEEEEEETTCCCCCTTC----EECTT------SCEEEECS
T ss_pred             CCcccccCCceeecCCCceEecCCCcEEEEEEEeecCC--CcEEEEeCCCccccccc----eecCC------CcEEEECC
Confidence            00 000112222 2234456789999999999999998  8999999543 433211    10011      24799999


Q ss_pred             CCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeC------------------------------------CeecCCCCceEE
Q psy1095         235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------------------------GKDLTSDGRLNI  278 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~------------------------------------~~~~~~~~~~~~  278 (325)
                      ++.+|+|.|+|.|.|..|.......|.|...+                                    +..+..+.+..+
T Consensus       265 v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~  344 (384)
T 3kld_A          265 FQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI  344 (384)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEE
T ss_pred             CChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEE
Confidence            99999999999999999988877777764332                                    122212222111


Q ss_pred             EEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         279 ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       279 ~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                        .++  .|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       345 --~~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          345 --EQG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             --ETT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             --eCC--EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence              222  699999999999999999999999999999999864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=2.1e-33  Score=263.40  Aligned_cols=290  Identities=22%  Similarity=0.334  Sum_probs=218.5

Q ss_pred             eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCcccccccccccc-----ccc---CCCCeeEecCCceEecCCCeE
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRL---TSSPRFYAVPHNKICDLGDTV   83 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~---~~~p~~~~~~~~~~v~~g~~v   83 (325)
                      .++|.+++..+..      ....|.|.+++.+|+|.|+|.+.+..+..     ..+   ..+|.+...+....+.+|+.+
T Consensus       374 ~v~W~k~g~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v  447 (816)
T 3dmk_A          374 TVSWMKDGKAIGH------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSV  447 (816)
T ss_dssp             EEEEEETTEECSC------CSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCE
T ss_pred             EEEEEECCEECCC------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCE
Confidence            5667776655432      34578999999999999999998765422     222   367888888888889999999


Q ss_pred             EEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEe----c-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095          84 RFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE----K-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus        84 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      .|.|.+.|.|.+.++|++++..+....++....    . .....|.|.+++.+|+|.|+|.+.|..|.......|.|...
T Consensus       448 ~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  527 (816)
T 3dmk_A          448 FLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL  527 (816)
T ss_dssp             EEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSS
T ss_pred             EEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecC
Confidence            999999999999999999999998776665432    1 22356999999999999999999999998888888888765


Q ss_pred             CcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-C
Q psy1095         159 RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-P  237 (325)
Q Consensus       159 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~  237 (325)
                      +      .+ .......+..|+.+.|.|.+.+.|.  +.+.|++++..+.........  .++       .|.|.++. .
T Consensus       528 p------~~-~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~k~~~~l~~~~~~~~~--~~~-------~l~i~~v~~~  589 (816)
T 3dmk_A          528 P------YI-RQMEKKAIVAGETLIVTCPVAGYPI--DSIVWERDNRALPINRKQKVF--PNG-------TLIIENVERN  589 (816)
T ss_dssp             C------EE-CCCCCEEEETTCCEEEECCEECSSE--EEEEEEETTEESCCSTTEEEC--TTS-------EEEESSCCHH
T ss_pred             C------ee-EccCCeEEecCCeEEEEEEecCCCC--CEEEEEECCeEcccCCceEEe--cCC-------eEEEEecCcc
Confidence            3      22 2334567889999999999999887  799999999988654432221  233       79999998 5


Q ss_pred             CCCeEEEEEEEeCCCcEE-eEEEEEEEeeCCee--------------------------------------cCCCCceEE
Q psy1095         238 EDEGEFTCRVANELGEVV-TSACLIVDVVKGKD--------------------------------------LTSDGRLNI  278 (325)
Q Consensus       238 ~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~--------------------------------------~~~~~~~~~  278 (325)
                      +|+|.|+|.|.|..|... ..+.+.+...+...                                      +..+.....
T Consensus       590 ~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~  669 (816)
T 3dmk_A          590 SDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITT  669 (816)
T ss_dssp             HHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEE
T ss_pred             ccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeE
Confidence            899999999999988543 34455543222110                                      000000111


Q ss_pred             E-EeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccCC
Q psy1095         279 I-TVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII  325 (325)
Q Consensus       279 ~-~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~i  325 (325)
                      . .......|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.|
T Consensus       670 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~  717 (816)
T 3dmk_A          670 SRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRW  717 (816)
T ss_dssp             EEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEE
T ss_pred             EEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCce
Confidence            1 1123467999999999999999999999999999999999988853

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=8.4e-34  Score=251.90  Aligned_cols=288  Identities=11%  Similarity=0.069  Sum_probs=188.9

Q ss_pred             eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCcccccccccccc------cccCCCCeeEecCCceEecCCCeEEE
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT------RRLTSSPRFYAVPHNKICDLGDTVRF   85 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p~~~~~~~~~~v~~g~~v~l   85 (325)
                      .++|...+.................+..+++.|+|.|+|.+.|..+..      ..+..+|.+  .|....+.+|+.+.|
T Consensus       170 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L  247 (527)
T 3qs9_E          170 IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWI  247 (527)
T ss_dssp             EEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEE
T ss_pred             eEEEEECCCCCccccccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEE
Confidence            567776665443221111111222356778999999999998765533      333455554  566778999999999


Q ss_pred             EEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEe--c----CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095          86 QCSVT-GQPAPWTSWSKDGKPATPNARVTIRE--K----EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus        86 ~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      .|.+. +.|.+.++|++++..+.....+....  .    ....+|.|.+++.+|+|.|+|.+.|.   ....+.|.|...
T Consensus       248 ~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~  324 (527)
T 3qs9_E          248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEK  324 (527)
T ss_dssp             EEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--
T ss_pred             EEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEcc
Confidence            99996 89999999999998876543332211  1    12346999999999999999999876   566777888765


Q ss_pred             CcccCCCeeeecC--cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         159 RAIISRPKVLNGL--ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       159 ~~~~~~p~~~~~~--~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      +.      +...+  ....+.+|+.+.|.|.+.|.|.  +.+.|++++..+.......    ..+      ..|.|.+++
T Consensus       325 p~------i~~~~~~~~~~v~~G~~v~L~C~~~g~P~--p~i~W~k~g~~l~~~~~~~----~~~------~~L~I~~v~  386 (527)
T 3qs9_E          325 GF------INATNSSEDYEIDQYEEFCFSVRFKAYPQ--IRCTWTFSRKSFPCEQKGL----DNG------YSISKFCNH  386 (527)
T ss_dssp             CE------EECCCSCCEECCCTTCCCCEEEEEEEESC--CEEEEEETTEEEECBCCBC----SSS------SEEEEECCC
T ss_pred             Cc------cccccCcccEEEcCCCeEEEEEEEEecCC--CEEEEEECCEECcCCcccc----cCC------cEEEEecCC
Confidence            32      22221  2345778999999999999998  8999999999886544321    111      479999999


Q ss_pred             CCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecC-------------CCCceEEE------------------------
Q psy1095         237 PEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLT-------------SDGRLNII------------------------  279 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~-------------~~~~~~~~------------------------  279 (325)
                      .+|+|.|+|.|.|..|.....+.|.|...+.-...             +...+...                        
T Consensus       387 ~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~~~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  466 (527)
T 3qs9_E          387 KHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR  466 (527)
T ss_dssp             TTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCCCE---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC----
T ss_pred             cccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCCCCEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceecccc
Confidence            99999999999999999888888877533321111             00011110                        


Q ss_pred             --EeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095         280 --TVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR  322 (325)
Q Consensus       280 --~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  322 (325)
                        .......+.|.-...+|+|.|+|.|.|..|..+..+.|.|.++
T Consensus       467 ~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p  511 (527)
T 3qs9_E          467 KVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP  511 (527)
T ss_dssp             -----CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC-----
T ss_pred             ccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCC
Confidence              0011122333334457999999999999999999999998765

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=249.02  Aligned_cols=291  Identities=10%  Similarity=0.098  Sum_probs=174.3

Q ss_pred             eeecccCCCCcccCCCCCCCC---CCCCCcccCCCCCCCcccccccccccc-----cccCCCCeeEecCCceEecCCCeE
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTP---RSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSSPRFYAVPHNKICDLGDTV   83 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v   83 (325)
                      .+.|...+..+..........   .+|.|.+++.+|+|.|+|.+.|..+..     +.+..+|.+. ...+..+..|+.+
T Consensus        79 ~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~-~~~p~~~~~~~~~  157 (423)
T 3qs7_E           79 SCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYT-LRRPYFRKMENQD  157 (423)
T ss_dssp             EEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----C-EEEEEEEECSSSS
T ss_pred             eEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCcccc-ccCCcEeccCCce
Confidence            456766554433222222122   257899999999999999998875532     2333445442 1223345668889


Q ss_pred             EEEEEEEecCCCeeEEeeCCeeCCCCCc---EEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE-EEEEEEECCC
Q psy1095          84 RFQCSVTGQPAPWTSWSKDGKPATPNAR---VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPR  159 (325)
Q Consensus        84 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~  159 (325)
                      .|.|.+.|.|.|.++|++++..+.....   ..+....  ..+     ...|+|.|+|.+.|..|.... .+.|.|...+
T Consensus       158 ~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~--~~l-----~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p  230 (423)
T 3qs7_E          158 ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE--KVL-----HELFGTDIRCCARNELGRECTRLFTIDLNQTP  230 (423)
T ss_dssp             CEEEEEEESSCCEEEEEEC-------------CEEECC--SEE-----CCCCSSCEEEEEECSSCEEEEECEEEESSSCC
T ss_pred             EEEEEEeeecCCeEEEEECCCCCccccccccccccccc--eEE-----ecccCeEEEEEEEcCCCCcceeeEEEEEecCC
Confidence            9999999999999999998875432110   0011111  111     678999999999999886543 3555554432


Q ss_pred             cccCCCeeeecCcCeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCC
Q psy1095         160 AIISRPKVLNGLENLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE  238 (325)
Q Consensus       160 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  238 (325)
                      ..        .+....+.+|+.+.|.|.+.+ .|+  +.+.|++++..+.............+........|.|.+++.+
T Consensus       231 ~~--------~~~~~~v~~G~~v~L~C~~~g~~p~--p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  300 (423)
T 3qs7_E          231 QT--------TLPQLFLKVGEPLWIRCKAVHVNHG--FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN  300 (423)
T ss_dssp             CS--------STTEEEEETTSCEEEEEEEEESSSC--CCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTT
T ss_pred             cc--------CCCceEEeCCCeEEEEEEEEcCCCC--cEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHH
Confidence            21        123567889999999999998 555  7899999998765432111111111111223457999999999


Q ss_pred             CCeEEEEEEEeCCCcEEeEEEEEEEeeCCeec---------CCCCce-------------EEEEeCCE------------
Q psy1095         239 DEGEFTCRVANELGEVVTSACLIVDVVKGKDL---------TSDGRL-------------NIITVGGT------------  284 (325)
Q Consensus       239 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~---------~~~~~~-------------~~~~~~~~------------  284 (325)
                      |+|.|+|.|.|.   ....+.|.|...+...+         ..+...             ..+..++.            
T Consensus       301 D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~  377 (423)
T 3qs7_E          301 DTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNG  377 (423)
T ss_dssp             TCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSS
T ss_pred             HCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCC
Confidence            999999999988   56666677743321111         111111             11222221            


Q ss_pred             EEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       285 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                      ..+.+.....+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus       378 ~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p  416 (423)
T 3qs7_E          378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT  416 (423)
T ss_dssp             SEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred             cEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence            122236677899999999999999999999999999877

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=2.8e-34  Score=246.37  Aligned_cols=291  Identities=19%  Similarity=0.212  Sum_probs=200.8

Q ss_pred             eeeecccCCCCcccCC--CCCCCCCCCCCcccCC-CCCCCccccccccccccc------ccCCCCeeE-ecCCceEecCC
Q psy1095          11 LSVKLTRPSGLMSGHS--TPRSTPRSTPPRSISP-LSSRTFTPYSLNSAIRTR------RLTSSPRFY-AVPHNKICDLG   80 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~v~~-~d~G~Y~c~~~~~~~~~~------~~~~~p~~~-~~~~~~~v~~g   80 (325)
                      ..++|.+++..+....  .......+|.|.++.. +|+|.|+|.+.+..+...      .+..+|.+. ..+....+.+|
T Consensus        37 ~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G  116 (382)
T 1cs6_A           37 ATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEG  116 (382)
T ss_dssp             CEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETT
T ss_pred             CEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecC
Confidence            4678888777665432  1222345788999996 999999999987654321      222223222 23456678999


Q ss_pred             CeEEEEEEE-EecCCCeeEEeeCCeeCC--CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE-----EEEE
Q psy1095          81 DTVRFQCSV-TGQPAPWTSWSKDGKPAT--PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-----ATAR  152 (325)
Q Consensus        81 ~~v~l~C~~-~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-----~~~~  152 (325)
                      +++.|.|.+ .+.|.+.+.|++++..+.  ...+....  .....|.|.+++.+|+|.|+|.+.+..+...     ....
T Consensus       117 ~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~  194 (382)
T 1cs6_A          117 WGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS--QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQ  194 (382)
T ss_dssp             SCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEE
T ss_pred             CcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEe--cCceEEEEEeeCcccCeeEEEEEEEccccccceeEcccee
Confidence            999999995 457889999999987643  22333322  2234699999999999999999988653221     1234


Q ss_pred             EEEECCCcccCCCeeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEE
Q psy1095         153 LEIMDPRAIISRPKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       153 l~v~~~~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (325)
                      |.+........+|.+... +....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.....      .      ....|.
T Consensus       195 l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~------~------~~~~L~  260 (382)
T 1cs6_A          195 LSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV--PQIKWRKLDGSQTSKWL------S------SEPLLH  260 (382)
T ss_dssp             EEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESC--CEEEEEECCSCCSCCCS------B------SSSEEE
T ss_pred             eccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCC--CEEEEEECCcccccEEe------c------CCcEEE
Confidence            454432111123444432 34567889999999999999987  89999998876543111      1      124799


Q ss_pred             eCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC------------------------------------eecCCCCc
Q psy1095         232 IPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG------------------------------------KDLTSDGR  275 (325)
Q Consensus       232 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~------------------------------------~~~~~~~~  275 (325)
                      |.+++.+|+|.|+|.|.|..|.....+.|.|...+.                                    ..+..+.+
T Consensus       261 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~  340 (382)
T 1cs6_A          261 IQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR  340 (382)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSS
T ss_pred             EccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCce
Confidence            999999999999999999999887777777643321                                    11111111


Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         276 LNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       276 ~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                      ...  .+  ..|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       341 ~~~--~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~a  382 (382)
T 1cs6_A          341 IEV--SG--GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA  382 (382)
T ss_dssp             EEE--ET--TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEE--EC--CEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEeC
Confidence            111  11  2699999999999999999999999999999999863

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=4.7e-32  Score=223.82  Aligned_cols=243  Identities=23%  Similarity=0.372  Sum_probs=180.9

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecC-CCeeEEee-CCeeCCCC-CcEEEEe-cCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSK-DGKPATPN-ARVTIRE-KEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~~-~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      |+.+...|.+..+.+|+++.|.|.+.+.| .+.+.|++ ++..+... .++.+.. ......|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            67888999999999999999999998876 68999999 77777543 3444432 345678999999999999999999


Q ss_pred             EeCCe-eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEe
Q psy1095         141 ENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV  219 (325)
Q Consensus       141 ~~~~~-~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  219 (325)
                      .+..+ .....+.|.|...      |.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+............
T Consensus        82 ~n~~g~~~~~~~~l~v~~~------~~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~  153 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQK------LMFKNAPTPQEFKEGEDAVIVCDVVSSLP--PTIIWKHKGRDVILKKDVRFIVLS  153 (291)
T ss_dssp             ECTTSCEEEEEEEEEEECC------SEEEECCSSEEEETTSCEEECCEEECSSC--CEEEEEETTSCSSTTCCTTEEECT
T ss_pred             EcCCCCeeEEEEEEEeecc------ccccCCCCcccccCCCeEEEEEEeccCCC--CEEEEEECCEEcccCCCceEEEcc
Confidence            99875 4456677777654      56666666778899999999999999887  899999999887655444333222


Q ss_pred             cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE--eEEEEEEEeeC-------------------------------
Q psy1095         220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV--TSACLIVDVVK-------------------------------  266 (325)
Q Consensus       220 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~~~-------------------------------  266 (325)
                      .       ..|.|.+++.+|+|.|+|.+.|..+...  ..+.|.|...+                               
T Consensus       154 ~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p  226 (291)
T 1qz1_A          154 N-------NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP  226 (291)
T ss_dssp             T-------SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC
T ss_pred             C-------CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC
Confidence            2       3799999999999999999998764332  23334432221                               


Q ss_pred             -------CeecCCCCc--eEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095         267 -------GKDLTSDGR--LNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR  322 (325)
Q Consensus       267 -------~~~~~~~~~--~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  322 (325)
                             +..+..+..  ...........|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+
T Consensus       227 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~k  291 (291)
T 1qz1_A          227 TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK  291 (291)
T ss_dssp             EEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             cEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEcC
Confidence                   111111100  01111222357999999999999999999999999999999999764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.3e-33  Score=243.18  Aligned_cols=296  Identities=19%  Similarity=0.214  Sum_probs=201.5

Q ss_pred             ceeeecccCCCCcccCCC---CCCCCCCCCCcccCCCCCCCcccccccccccccc------cC--CCCeeEecCCceEec
Q psy1095          10 SLSVKLTRPSGLMSGHST---PRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRR------LT--SSPRFYAVPHNKICD   78 (325)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~------~~--~~p~~~~~~~~~~v~   78 (325)
                      ...++|.+++..+.....   ......+|.|.+++.+|+|.|+|.+.+..+....      +.  ..|.+  .+....+.
T Consensus        36 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~--~~~~~~~~  113 (395)
T 1bih_A           36 GVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA--KTHEKTPI  113 (395)
T ss_dssp             SCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC--EEEEECCB
T ss_pred             CceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc--CCcceeee
Confidence            357788888877655431   2334568999999999999999999876543221      11  22332  33456688


Q ss_pred             CCCeEEEEEEE-EecCCCeeEEeeCC---eeCCC----CCcEEEEecCCeEEEEEccCCCCCCe---EEEEEEEeCCeeE
Q psy1095          79 LGDTVRFQCSV-TGQPAPWTSWSKDG---KPATP----NARVTIREKEDLRFLEISEVTLEDAG---LYTIKVENNYGSV  147 (325)
Q Consensus        79 ~g~~v~l~C~~-~~~p~~~v~W~~~~---~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~~  147 (325)
                      +|+.+.|.|.+ .+.|.+.+.|++++   .+...    ..++.....+   .|.|.+++..|+|   .|+|.+.+..+..
T Consensus       114 ~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~  190 (395)
T 1bih_A          114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCTAKNAAVDE  190 (395)
T ss_dssp             TTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             eCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCC---cEEEEEEeeccCCCceEEEEEEEecccce
Confidence            99999999996 78899999999986   22111    2344433322   5999999999999   9999999987754


Q ss_pred             EEEEEEEEEC---CCc----ccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec
Q psy1095         148 EATARLEIMD---PRA----IISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD  220 (325)
Q Consensus       148 ~~~~~l~v~~---~~~----~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  220 (325)
                      ..........   .+.    ....|.+  .+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~  266 (395)
T 1bih_A          191 EVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPM--GYPNYFKNGKDVNGNPEDRITRHNR  266 (395)
T ss_dssp             CEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSC--CCCEEEETTEECCCCTTSSEESCSS
T ss_pred             EEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCC--CeEEEEECCEEcCCCCceeEEEEec
Confidence            3332222211   100    0112232  245667899999999999999887  7899999999886544332221011


Q ss_pred             CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe-EEEEEEEeeCCee--------cCCCCce--------------E
Q psy1095         221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDVVKGKD--------LTSDGRL--------------N  277 (325)
Q Consensus       221 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~--------~~~~~~~--------------~  277 (325)
                      .    ....|.|.+++.+|+|.|+|.|.|..|.... .+.|.|...+...        +..+...              .
T Consensus       267 ~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~  342 (395)
T 1bih_A          267 T----SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV  342 (395)
T ss_dssp             S----TTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCE
T ss_pred             C----CCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeE
Confidence            0    1137999999999999999999999888655 6677764332111        1111111              0


Q ss_pred             ------------EEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEe
Q psy1095         278 ------------IITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       278 ------------~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  320 (325)
                                  ....++  .|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       343 W~~~g~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  395 (395)
T 1bih_A          343 WSHNAKPLSGGRATVTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN  395 (395)
T ss_dssp             EEETTEECCSSSEEEETT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEECCEECCCCceEEECC--EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEEC
Confidence                        011122  79999999999999999999999999999999883

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.5e-33  Score=243.48  Aligned_cols=297  Identities=20%  Similarity=0.269  Sum_probs=204.0

Q ss_pred             eeeecccCCCCcccCC----CCCCCCCCCCCc----ccCCCCCCCcccccccccccc------cccCCCCeeE-ecCCce
Q psy1095          11 LSVKLTRPSGLMSGHS----TPRSTPRSTPPR----SISPLSSRTFTPYSLNSAIRT------RRLTSSPRFY-AVPHNK   75 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~----~~~~~~~~l~i~----~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p~~~-~~~~~~   75 (325)
                      ..++|.+++..+....    .......+|.|.    +++.+|+|.|+|.+.+..+..      ..+..+|.+. ..+.+.
T Consensus        47 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~  126 (404)
T 3p3y_A           47 PSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPV  126 (404)
T ss_dssp             CEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCE
T ss_pred             CeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCe
Confidence            3678888877554322    222234555554    899999999999998764432      2344555443 334557


Q ss_pred             EecCCCeEEEEEEE-EecCCCeeEEeeCCee-CCCCCcEEEEecCCeEEEEEccCCCCC-CeEEEEEEEeCCeeEE---E
Q psy1095          76 ICDLGDTVRFQCSV-TGQPAPWTSWSKDGKP-ATPNARVTIREKEDLRFLEISEVTLED-AGLYTIKVENNYGSVE---A  149 (325)
Q Consensus        76 ~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~---~  149 (325)
                      .+.+|+++.|.|.+ .+.|.+.+.|++++.. +....+......   ..|.|.+++..| +|.|+|.+.|..+...   .
T Consensus       127 ~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~  203 (404)
T 3p3y_A          127 VVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN---GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKN  203 (404)
T ss_dssp             EEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTT---SCEEESSCCSGGGSSCBEEEEECTTTCCEEECC
T ss_pred             EEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCC---CcEEEEeeeeccCCcceEEEEEeccccceeccC
Confidence            78999999999998 7789999999998744 344444444322   359999999999 5999999998766422   2


Q ss_pred             EEEEEEECCCcc-cCCCeeeecC---cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcce
Q psy1095         150 TARLEIMDPRAI-ISRPKVLNGL---ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL  225 (325)
Q Consensus       150 ~~~l~v~~~~~~-~~~p~~~~~~---~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  225 (325)
                      .+.+.+...+.. ..+|.+....   ....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.....   .....     
T Consensus       204 ~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~--~~v~W~~~~~~~~~~~~---~~~~~-----  273 (404)
T 3p3y_A          204 PFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT--PDIAWYKKGGDLPSDKA---KFENF-----  273 (404)
T ss_dssp             CBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSC--CEEEEEETTBCCCTTTE---EEEGG-----
T ss_pred             ceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCC--CcEEEEECCEECCCCcc---ccccc-----
Confidence            345556543221 1223333222   2346889999999999999888  89999999988764432   11111     


Q ss_pred             eEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCee-------cCCCCce-------------EEEEeCC--
Q psy1095         226 VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD-------LTSDGRL-------------NIITVGG--  283 (325)
Q Consensus       226 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~-------------~~~~~~~--  283 (325)
                       ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+...       +..+...             ..+..++  
T Consensus       274 -~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~  352 (404)
T 3p3y_A          274 -NKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEP  352 (404)
T ss_dssp             -GTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEE
T ss_pred             -CceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEe
Confidence             1489999999999999999999999988888777775432111       1111111             0111111  


Q ss_pred             -------------EEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         284 -------------TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       284 -------------~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                                   ...|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus       353 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          353 LQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             GGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             cCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence                         12699999999999999999999999999999999864

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-32  Score=224.78  Aligned_cols=243  Identities=23%  Similarity=0.360  Sum_probs=178.5

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEee-CCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.+...|.+..+.+|+.+.|.|.+.+.|. .+.|++ ++..+....++.+...+....|.|.+++.+|+|.|+|.+.+
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            5789999999999999999999999998775 899999 77777777787777767677899999999999999999999


Q ss_pred             CCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         143 NYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       143 ~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      ..+.. ...+.|.|...      |.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+............. 
T Consensus        82 ~~g~~~~~~~~l~v~~~------~~~~~~~~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~-  152 (291)
T 2wim_A           82 AKGQTQEATVVLEIYQK------LTFREVVSPQEFKQGEDAEVVCRVSSSPA--PAVSWLYHNEEVTTISDNRFAMLAN-  152 (291)
T ss_dssp             SSSCEEEEEEEEEEECC------CBCCSCCCSEEEETTSCEEECCCCBCSSC--CEEEEECC----CBCCCSSEEECTT-
T ss_pred             ccCceEEEEEEEEecCC------cceEeCCCChhhcCCCCEEEEEEEccCCC--CEEEEEECCccccccCCceEEEccC-
Confidence            87754 45667777665      34444445667899999999999998887  8899999998776543333332222 


Q ss_pred             CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe--EEEEEEEeeCC--------------------------------
Q psy1095         222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT--SACLIVDVVKG--------------------------------  267 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~v~~~~~--------------------------------  267 (325)
                            ..|.|.+++.+|+|.|+|.+.|..+....  .+.+.+...+.                                
T Consensus       153 ------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v  226 (291)
T 2wim_A          153 ------NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI  226 (291)
T ss_dssp             ------SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred             ------CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence                  36999999999999999999998755433  33444432221                                


Q ss_pred             ------eecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         268 ------KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       268 ------~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                            ..+..+.+..  .......|.|.++..+|+|.|+|.|.|..|..+.++.|.|..++.
T Consensus       227 ~W~~~g~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          227 SWFRNGKLIEENEKYI--LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             EEEETTEECCCTTTEE--ECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred             EEEECCEECcCCccEE--EcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence                  1111111111  111234799999999999999999999999999999999987763

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=7.5e-33  Score=253.02  Aligned_cols=284  Identities=18%  Similarity=0.236  Sum_probs=206.7

Q ss_pred             eeecccCCCCcccCCCC--CCCCCCCCCcccCCCCCCCcccccccccccc------cccCCCC-eeEecCCceEecCCCe
Q psy1095          12 SVKLTRPSGLMSGHSTP--RSTPRSTPPRSISPLSSRTFTPYSLNSAIRT------RRLTSSP-RFYAVPHNKICDLGDT   82 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~--~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p-~~~~~~~~~~v~~g~~   82 (325)
                      .++|.+++..+......  ......|.|.+++.+|+|.|+|.+.+..+..      ..+..+| .+...|....+.+|+.
T Consensus       319 ~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~  398 (642)
T 1e07_A          319 TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVN  398 (642)
T ss_pred             cEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCc
Confidence            57888887665443221  2235689999999999999999998876532      2223333 3455666778899999


Q ss_pred             EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEE--EEEEEECCCc
Q psy1095          83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT--ARLEIMDPRA  160 (325)
Q Consensus        83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~l~v~~~~~  160 (325)
                      +.|.|.+.+.|.+.++|++++..+...           ..|.|.+++.+|+|.|+|.+.|..|....+  +.+.|...+ 
T Consensus       399 ~~l~C~~~g~p~~~i~W~~~g~~~~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~-  466 (642)
T 1e07_A          399 LSLSCHAASNPPAQYSWLIDGNIQQHT-----------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL-  466 (642)
T ss_pred             EEEEEEcCccCCCeEEEEECCEEcCCC-----------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccC-
Confidence            999999999999999999999887532           249999999999999999999988755443  445554431 


Q ss_pred             ccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         161 IISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       161 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                        .+|.+.. .....+.+|+.+.|.|.+.+ ++  +.+.|++++..+....+....  .+      ...|.|.+++.+|+
T Consensus       467 --~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~--~~i~W~~~g~~l~~~~~~~~~--~~------~~~L~i~~v~~~d~  532 (642)
T 1e07_A          467 --PKPSISS-NNSKPVEDKDAVAFTCEPEA-QN--TTYLWWVNGQSLPVSPRLQLS--NG------NRTLTLFNVTRNDA  532 (642)
T ss_pred             --CCceEec-CCceeecCCCeEEEEEECCC-CC--cEEEEEECCEeCCCCCcEEEc--CC------CcEEEEeecChhcC
Confidence              2344433 33456789999999999983 55  899999999988765543221  22      25899999999999


Q ss_pred             eEEEEEEEeCCCcEEe-EEEEEEEeeCCeecC--------CCCce------------E-EEEeCC-----EEEEEEcCCC
Q psy1095         241 GEFTCRVANELGEVVT-SACLIVDVVKGKDLT--------SDGRL------------N-IITVGG-----TSVLTIEDIT  293 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~--------~~~~~------------~-~~~~~~-----~~~l~i~~v~  293 (325)
                      |.|+|.|.|..|.... .+.|.|...+.....        .+...            . .+..++     ...|.|.++.
T Consensus       533 G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~~~L~i~~~~  612 (642)
T 1e07_A          533 RAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKIT  612 (642)
T ss_pred             ceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccCceEEECccc
Confidence            9999999999887544 577777544331110        01111            1 122222     2479999999


Q ss_pred             CCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         294 GDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       294 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                      .+|+|.|+|.|.|..|..+.++.|.|+.
T Consensus       613 ~~d~G~Y~C~a~N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          613 PNNNGTYACFVSNLATGRNNSIVKSITV  640 (642)
T ss_pred             ccCCeEEEEEEEecccCcceeEEEEEEE
Confidence            9999999999999999999998888864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.6e-32  Score=257.45  Aligned_cols=278  Identities=24%  Similarity=0.295  Sum_probs=209.5

Q ss_pred             CCCCCCcccCCCCCCCccccccccccc-----ccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIR-----TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA  106 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~-----~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~  106 (325)
                      ..+|.|.+++.+|+|.|+|.+.+..+.     ...+..+|.+...|....+.+|+++.|.|.+.+.|.+.+.|++++..+
T Consensus       305 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~  384 (816)
T 3dmk_A          305 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI  384 (816)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEEC
T ss_pred             cceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEEC
Confidence            457889999999999999999876543     234456777778888888999999999999999999999999999988


Q ss_pred             CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEE
Q psy1095         107 TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFEC  186 (325)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C  186 (325)
                      ....          ..|.|.+++.+|+|.|+|.+.|..+.......+.|...   ..+|.+...+....+.+|+.+.|.|
T Consensus       385 ~~~~----------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~---~~~p~i~~~~~~~~v~~G~~v~L~C  451 (816)
T 3dmk_A          385 GHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR---FDPPVIRQAFQEETMEPGPSVFLKC  451 (816)
T ss_dssp             SCCS----------SEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCS---SCCCEEEEECCCEEECSSSCEEEEE
T ss_pred             CCCC----------CEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccc---cCCCceEecCcceEEcCCCCEEEEE
Confidence            6432          35999999999999999999998887777777766532   2356777666777889999999999


Q ss_pred             EEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeC
Q psy1095         187 QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK  266 (325)
Q Consensus       187 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~  266 (325)
                      .+.+.|.  +.+.|++++..+.............. .....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+
T Consensus       452 ~~~g~p~--p~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  528 (816)
T 3dmk_A          452 VAGGNPT--PEISWELDGKKIANNDRYQVGQYVTV-NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP  528 (816)
T ss_dssp             EEECSSC--CEEEEEETTEECCSCTTEEEEEEECT-TSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSC
T ss_pred             EEecCCC--CEEEEEECCEECCCCCCcccccEEec-CCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCC
Confidence            9999888  89999999998876554332211110 11134679999999999999999999999988887777774322


Q ss_pred             Ce------ecCCCCce------------E-EEEeC-------------CEEEEEEcCCC-CCCCeEEEEEEECCCee-EE
Q psy1095         267 GK------DLTSDGRL------------N-IITVG-------------GTSVLTIEDIT-GDDSGKYQVHVSNQHGS-DS  312 (325)
Q Consensus       267 ~~------~~~~~~~~------------~-~~~~~-------------~~~~l~i~~v~-~~d~G~Y~C~a~n~~g~-~~  312 (325)
                      ..      .+..+...            . .+..+             ....|.|.++. .+|+|.|+|.|.|..|. ..
T Consensus       529 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~  608 (816)
T 3dmk_A          529 YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSAR  608 (816)
T ss_dssp             EECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEE
T ss_pred             eeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceee
Confidence            10      00000000            0 01111             12369999998 68999999999999995 45


Q ss_pred             eEEEEEEecccCC
Q psy1095         313 CYASVAVEGRKII  325 (325)
Q Consensus       313 ~~~~l~V~~~p~i  325 (325)
                      ..+.|.|..+|.|
T Consensus       609 ~~~~v~v~~~p~~  621 (816)
T 3dmk_A          609 GSLEVQVMVLPRI  621 (816)
T ss_dssp             EEEEEEEECCCCC
T ss_pred             eeEEEEEecCCcc
Confidence            5688888877753

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=5.5e-34  Score=245.02  Aligned_cols=295  Identities=19%  Similarity=0.226  Sum_probs=201.0

Q ss_pred             eeeeccc-CCCCcccCCC--CCCCCCCCCCcccCCCC------CCCcccccccccccc------cccCCCCeeEecCCce
Q psy1095          11 LSVKLTR-PSGLMSGHST--PRSTPRSTPPRSISPLS------SRTFTPYSLNSAIRT------RRLTSSPRFYAVPHNK   75 (325)
Q Consensus        11 ~~~~~~~-~~~~~~~~~~--~~~~~~~l~i~~v~~~d------~G~Y~c~~~~~~~~~------~~~~~~p~~~~~~~~~   75 (325)
                      ..++|.+ ++..+.....  ......+|.|.+++.+|      +|.|+|.+.+..+..      +.+..+|.+...+...
T Consensus        34 p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~  113 (388)
T 2v5m_A           34 PEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE  113 (388)
T ss_dssp             CEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCE
T ss_pred             CEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccce
Confidence            3678888 4554443221  11244578999999998      999999998775532      2233566666667778


Q ss_pred             EecCCCeEEEEEEEEecCC---CeeEEeeCCeeCCC-----CCcEEEEecCCeEEEEEccCCCCCC-eEEEEEEEeCCee
Q psy1095          76 ICDLGDTVRFQCSVTGQPA---PWTSWSKDGKPATP-----NARVTIREKEDLRFLEISEVTLEDA-GLYTIKVENNYGS  146 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~p~---~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~  146 (325)
                      .+.+|+.+.|.|.+.+.+.   +.+.|++++..+..     ..++.+...   ..|.|.+++.+|+ |.|+|.+.+..+.
T Consensus       114 ~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~~G~Y~C~~~n~~~~  190 (388)
T 2v5m_A          114 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPEDGYKSYQCRTKHRLTG  190 (388)
T ss_dssp             EEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTT---SCEEESSCCGGGGGCCEEEEEEETTTC
T ss_pred             eeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccC---CcEEEecCCccccCeeEEEEeccCCCC
Confidence            8999999999999987543   78999999876532     234443322   3599999999999 9999999987532


Q ss_pred             -EEEE---EEEEEECCCcccCCCee-eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEecc----CCCCceEE
Q psy1095         147 -VEAT---ARLEIMDPRAIISRPKV-LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL----DSDMKPEV  217 (325)
Q Consensus       147 -~~~~---~~l~v~~~~~~~~~p~~-~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~----~~~~~~~~  217 (325)
                       ....   ..|.|..+... ..|.+ ........+.+|+.+.|.|.+.+.|.  +.+.|++++..+..    ....... 
T Consensus       191 ~~~~~~~~~~l~v~~~~~~-~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~--p~v~W~~~~~~~~~~~~~~~~~~~~-  266 (388)
T 2v5m_A          191 ETRLSATKGRLVITEPISS-SAPRTPALVQKPLELMVAHTISLLCPAQGFPA--PSFRWYKFIEGTTRKQAVVLNDRVK-  266 (388)
T ss_dssp             CEEECSSCBCEEEECCCSC-EEEECCSSCCCCEEEETTSCEEECCCCEEESC--CEEEEEEECTTSSCEEECCCSSSEE-
T ss_pred             ceeeccccceEEEecCCcC-CCCcCccccCCceEEeeCCcEEEEEECCCCCC--CEEEEEecCCCCcccccccccCcee-
Confidence             2211   24555543111 01111 11123456788999999999999988  89999997533211    0011111 


Q ss_pred             EecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCee-------cCCCCceE-------------
Q psy1095         218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD-------LTSDGRLN-------------  277 (325)
Q Consensus       218 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~~-------------  277 (325)
                      ...       ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+...       +..+....             
T Consensus       267 ~~~-------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i  339 (388)
T 2v5m_A          267 QVS-------GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV  339 (388)
T ss_dssp             EET-------TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEE
T ss_pred             ccc-------CEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeE
Confidence            112       489999999999999999999999988888888775433211       11111111             


Q ss_pred             EEEeC------CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEE
Q psy1095         278 IITVG------GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV  319 (325)
Q Consensus       278 ~~~~~------~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  319 (325)
                      .+..+      +...|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus       340 ~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          340 SWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            11122      2357999999999999999999999999999999987

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=8.9e-33  Score=227.39  Aligned_cols=238  Identities=20%  Similarity=0.425  Sum_probs=191.3

Q ss_pred             eeeecccCCCCcccCCCCC----CCCCCCCCcccCCCCCCCccccccccccc-----ccccCCCCeeEecCC-ceEecCC
Q psy1095          11 LSVKLTRPSGLMSGHSTPR----STPRSTPPRSISPLSSRTFTPYSLNSAIR-----TRRLTSSPRFYAVPH-NKICDLG   80 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~-----~~~~~~~p~~~~~~~-~~~v~~g   80 (325)
                      ..++|.+++..+......+    ....+|.|.+++.+|+|.|+|.+.+..+.     ...+..+|.+...+. ...+.+|
T Consensus        35 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g  114 (284)
T 2rik_A           35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQD  114 (284)
T ss_dssp             CEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETT
T ss_pred             CEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCC
Confidence            3677887776655432211    12357889999999999999999775443     234457787766544 4568899


Q ss_pred             CeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCc
Q psy1095          81 DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA  160 (325)
Q Consensus        81 ~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~  160 (325)
                      +.+.|.|.+.+.|.+.+.|++++..+....++..........|.|.+++.+|+|.|+|.+.|..+.....+.|.|..+  
T Consensus       115 ~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~--  192 (284)
T 2rik_A          115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP--  192 (284)
T ss_dssp             CCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECC--
T ss_pred             ceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecC--
Confidence            999999999999999999999999998877777766677788999999999999999999999988888888988876  


Q ss_pred             ccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         161 IISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       161 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                          |.+...+....+..|+.+.|.|.+.+.|+  +.+.|++++..+.........  ..+    ....|.|.+++.+|+
T Consensus       193 ----p~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~v~W~~~~~~~~~~~~~~~~--~~~----~~~~L~i~~v~~~d~  260 (284)
T 2rik_A          193 ----PVFRKKPHPVETLKGADVHLECELQGTPP--FQVSWHKDKRELRSGKKYKIM--SEN----FLTSIHILNVDSADI  260 (284)
T ss_dssp             ----CBCCSCCCCEEECTTCCEEEEEECBSSSC--CEEEEEETTEEECBTTTEEEE--EET----TEEEEEECSCCGGGC
T ss_pred             ----CcceeCCCcceecCCCeEEEEEEEEecCC--CEEEEEECCEECcCCCCEEEE--EcC----CEEEEEEcCCCcccC
Confidence                44444445667889999999999999888  899999999998766554332  222    346899999999999


Q ss_pred             eEEEEEEEeCCCcEEeEEEEEE
Q psy1095         241 GEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |.|+|.|.|..|.....+.|.|
T Consensus       261 G~Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          261 GEYQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCceeEEEEEEE
Confidence            9999999999999988888877

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=2.9e-32  Score=249.18  Aligned_cols=275  Identities=17%  Similarity=0.246  Sum_probs=197.9

Q ss_pred             eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCcccccccccccc-------cccCC---CCeeEecCCceEecCCC
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-------RRLTS---SPRFYAVPHNKICDLGD   81 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-------~~~~~---~p~~~~~~~~~~v~~g~   81 (325)
                      .++|.+++..+.       ....|.|.+++.+|+|.|+|.+.+..+..       ..+..   +|.+. .+....+..|+
T Consensus       234 ~i~W~~~g~~i~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~-~~~~~~~~~g~  305 (642)
T 1e07_A          234 QYSWFVNGTFQQ-------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFIT-SNNSNPVEDED  305 (642)
T ss_pred             EEEEEECCeEcc-------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEE-cCCceeEecCC
Confidence            566776665542       23578999999999999999998765422       12222   23333 23334466688


Q ss_pred             eEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEEEEECCCc
Q psy1095          82 TVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATARLEIMDPRA  160 (325)
Q Consensus        82 ~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~  160 (325)
                      .+.|.|.+.+.| +.+.|++++..+....++.+...  ...|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|...|.
T Consensus       306 ~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~  382 (642)
T 1e07_A          306 AVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSND--NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD  382 (642)
T ss_pred             cEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCC--CCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCC
Confidence            899999998876 68999999998877666665433  3479999999999999999999988753 3457777776532


Q ss_pred             ccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         161 IISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       161 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      .   +  ...+....+.+|+.+.|.|.+.+.|+  +.+.|+++|..+...                 ..|.|.+++.+|+
T Consensus       383 ~---~--~~~~~~~~~~~g~~~~l~C~~~g~p~--~~i~W~~~g~~~~~~-----------------~~L~i~~~~~~d~  438 (642)
T 1e07_A          383 D---P--TISPSYTYYRPGVNLSLSCHAASNPP--AQYSWLIDGNIQQHT-----------------QELFISNITEKNS  438 (642)
T ss_pred             C---C--eecCCceEecCCCcEEEEEEcCccCC--CeEEEEECCEEcCCC-----------------ceEEEccCChhhC
Confidence            1   1  22334567889999999999999888  899999999876421                 3699999999999


Q ss_pred             eEEEEEEEeCCCcEEeEEEEEEEee---------------------------------------CCeecCCCCceEEEEe
Q psy1095         241 GEFTCRVANELGEVVTSACLIVDVV---------------------------------------KGKDLTSDGRLNIITV  281 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~~~~l~v~~~---------------------------------------~~~~~~~~~~~~~~~~  281 (325)
                      |.|+|.|.|..|....+..+.+...                                       ++..+..+.+..+  .
T Consensus       439 G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l~~~~~~~~--~  516 (642)
T 1e07_A          439 GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQL--S  516 (642)
T ss_pred             eEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCCCCcEEEEEECCEeCCCCCcEEE--c
Confidence            9999999999876654433333221                                       1111111111111  1


Q ss_pred             CCEEEEEEcCCCCCCCeEEEEEEECCCeeEEe-EEEEEEeccc
Q psy1095         282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC-YASVAVEGRK  323 (325)
Q Consensus       282 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p  323 (325)
                      .+...|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|
T Consensus       517 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p  559 (642)
T 1e07_A          517 NGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP  559 (642)
T ss_pred             CCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCC
Confidence            22357999999999999999999999997654 6889988655

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=2.6e-32  Score=243.57  Aligned_cols=280  Identities=16%  Similarity=0.195  Sum_probs=184.9

Q ss_pred             CCCCCcccCCCCCCCccccccccccc--------cccc----CCCCeeEecCCceEecCCCeEEEEEEEEecCCC--eeE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIR--------TRRL----TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP--WTS   98 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~--------~~~~----~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~--~v~   98 (325)
                      .+|.|.+++.+|+|.|+|.+.+..+.        ...+    ..+|.+...+....+.+|+.+.|.|.+.+.|.+  .++
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  149 (523)
T 2rcj_C           70 ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVA  149 (523)
T ss_pred             EEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEE
Confidence            36899999999999999999875421        2233    356777777777777889999999999987654  899


Q ss_pred             EeeCCeeCCCCCcEEE--EecCC----eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCc
Q psy1095          99 WSKDGKPATPNARVTI--REKED----LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLE  172 (325)
Q Consensus        99 W~~~~~~~~~~~~~~~--~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~  172 (325)
                      |+|++..+........  ...++    ...|.|.+++.+|+|.|+|.+.|..+.....+.+.+...  ...+|.+.....
T Consensus       150 W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~--~~~~P~v~~~~~  227 (523)
T 2rcj_C          150 WKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSA--STKGPSVFPLAP  227 (523)
T ss_pred             EecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCC--CCcCCEEEecCC
Confidence            9999988865432211  11111    136999999999999999999998776555444332211  123455543333


Q ss_pred             CeeEecCCcEEEEEEEEec-CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQVV-PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...+.+|+.+.|.|.+.+. |.+ ..+.|++++..+........  ...+..+...+.|.|.++..+| |.|+|.|.|..
T Consensus       228 ~~~~~~G~~~~l~C~~~g~~P~p-~~v~W~k~g~~~~~~~~~~~--~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~  303 (523)
T 2rcj_C          228 SSKSTSGGTAALGCLVKDYFPQP-VTVSWNSGALTSGVHTFPAV--LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP  303 (523)
T ss_pred             CcccccCCceEEEEEEeceeCCC-eEEEEecCCcccceEeCCcE--ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCC
Confidence            4456789999999999887 541 38999999877532211111  1222223345689999999999 99999999998


Q ss_pred             CcEEeEEEEEEEeeC------C--ee-cC-----------C-----CCceEE-EEe-----------------CC----E
Q psy1095         252 GEVVTSACLIVDVVK------G--KD-LT-----------S-----DGRLNI-ITV-----------------GG----T  284 (325)
Q Consensus       252 ~~~~~~~~l~v~~~~------~--~~-~~-----------~-----~~~~~~-~~~-----------------~~----~  284 (325)
                      |.......|.+...+      +  .. +.           .     +....+ +..                 ++    .
T Consensus       304 g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~  383 (523)
T 2rcj_C          304 SNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVV  383 (523)
T ss_pred             CCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEE
Confidence            875544443321100      0  00 10           0     000111 111                 11    1


Q ss_pred             EEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEE
Q psy1095         285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVA  318 (325)
Q Consensus       285 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  318 (325)
                      ..|.|.++..+|+|.|+|.|.|..|.......|.
T Consensus       384 s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~  417 (523)
T 2rcj_C          384 SVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTIS  417 (523)
T ss_pred             EEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence            3488888999999999999999988766555554

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=9.6e-32  Score=243.14  Aligned_cols=278  Identities=17%  Similarity=0.159  Sum_probs=183.9

Q ss_pred             CCCCcccCCCCCCCcccccccccccccccCCCCeeE-ecCCceEecCCCeEEEEEEEEecCC---CeeEEe-eCCeeC--
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFY-AVPHNKICDLGDTVRFQCSVTGQPA---PWTSWS-KDGKPA--  106 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~p~---~~v~W~-~~~~~~--  106 (325)
                      +|.|.+++.+|+|.|+|.+.+..+...... .-.+. ..|....+.+|+.+.|.|.+ +.+.   +.+.|+ +++...  
T Consensus       186 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~-~l~V~~~~p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~  263 (585)
T 2ocw_A          186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNA-DLQVLKPEPELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDV  263 (585)
T ss_pred             EEEEccCChhHCeEEEEEeccCCccccceE-EEEEccCCCceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcce
Confidence            689999999999999999987655321100 00011 12444567899999999997 4443   678886 777321  


Q ss_pred             --C--------CCCcEEEEec--CCeEEEEEccCCCCCCeEEEEEEEeCCeeE----EEEEEEEEECCCcccCCCeeeec
Q psy1095         107 --T--------PNARVTIREK--EDLRFLEISEVTLEDAGLYTIKVENNYGSV----EATARLEIMDPRAIISRPKVLNG  170 (325)
Q Consensus       107 --~--------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~p~~~~~  170 (325)
                        .        ...++.+...  ++...|.|.+++.+|+|.|+|.+.|.....    ...+.|.|...      |.+...
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~------p~~~~~  337 (585)
T 2ocw_A          264 VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEE------STIPRS  337 (585)
T ss_pred             EEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecc------cccccC
Confidence              1        1234443322  333479999999999999999999854332    16777888765      334444


Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCee----EEee--CCE--EeccCC-------CCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDI----SWFR--NNR--LIKLDS-------DMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~----~W~~--~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+.+|+.+.|.|.+.+.|.  +.+    .|++  ++.  .+....       ..+......  .......|.|.++
T Consensus       338 ~~~~~~~~G~~v~l~C~~~~~p~--p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~--~~~g~~~L~I~~v  413 (585)
T 2ocw_A          338 PTVVKGVAGSSVAVLCPYNRKES--KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE--PGNGTFTVILNQL  413 (585)
T ss_pred             CcceEEEeCCcEEEEEecCCCCC--ccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEecc--CCCcEEEEEECCC
Confidence            55677889999999999998887  544    8999  776  443211       111111100  0012346999999


Q ss_pred             CCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecC---------------------------------CCCceE-----
Q psy1095         236 YPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLT---------------------------------SDGRLN-----  277 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~---------------------------------~~~~~~-----  277 (325)
                      +.+|+|.|+|.| |..+.....+.|.|...++....                                 .++...     
T Consensus       414 ~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~  492 (585)
T 2ocw_A          414 TSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQD  492 (585)
T ss_pred             ChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccC
Confidence            999999999999 88887777777777432111000                                 000000     


Q ss_pred             ------EEE---eCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeE-EEEEEecccC
Q psy1095         278 ------IIT---VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY-ASVAVEGRKI  324 (325)
Q Consensus       278 ------~~~---~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p~  324 (325)
                            ...   .+....|.|.++..+|+|.|+|.|.|..|..... +.|.|+++|+
T Consensus       493 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p~  549 (585)
T 2ocw_A          493 EGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA  549 (585)
T ss_pred             CCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeeee
Confidence                  000   1122589999999999999999999999976654 8999998873

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=4.9e-32  Score=226.45  Aligned_cols=242  Identities=20%  Similarity=0.285  Sum_probs=172.8

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.|... ....+.+|+++.|.|.+.+. |.+.+.|++++..+....++...  .+...|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~~P~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n   82 (317)
T 2y25_A            6 TGPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKD   82 (317)
T ss_dssp             SCCEEEEE-EEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEEEES
T ss_pred             CCCcEeee-eeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEEEEEC
Confidence            46787744 45789999999999999886 78899999999998866665543  3346899999999999999999999


Q ss_pred             CCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEe----------cCCCCCeeEEeeCCEEeccCCC
Q psy1095         143 NYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV----------VPPNDHDISWFRNNRLIKLDSD  212 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~----------~~~~~~~~~W~~~~~~~~~~~~  212 (325)
                      ..+.....+.|.|...      |.+........+..|+.+.|.|.+.+          .|.  +.+.|++++..+..+.+
T Consensus        83 ~~g~~~~~~~l~v~~~------~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~--~~i~W~~~~~~~~~~~~  154 (317)
T 2y25_A           83 DRGKDKSRLKLVDEAF------KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVED--LKVNWSHNGSAIRYSDR  154 (317)
T ss_dssp             SSCEEEEEECCSTHHH------HHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSS--CEEEEEESSSBCCCCSS
T ss_pred             CCCcEEEEEEEEEecC------ccccccCCceecccCCCeEEEeeccccEEEEEeccCCCC--cEEEEEECCEECCCCCC
Confidence            8887665555444332      11111112233445666666666655          455  89999999988876544


Q ss_pred             CceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE------------------------------
Q psy1095         213 MKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV------------------------------  262 (325)
Q Consensus       213 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v------------------------------  262 (325)
                      ....  ..+    ....|.|.+++.+|+|.|+|.|.|..+.....+.|.+                              
T Consensus       155 ~~~~--~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  228 (317)
T 2y25_A          155 VKTG--VTG----EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL  228 (317)
T ss_dssp             EEEE--ECS----SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBC
T ss_pred             eEEe--ccC----CEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccC
Confidence            3322  333    3467999999999999999999998876655544432                              


Q ss_pred             ---------------------------EeeCCeecCCCCceEEEEe-CCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeE
Q psy1095         263 ---------------------------DVVKGKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY  314 (325)
Q Consensus       263 ---------------------------~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  314 (325)
                                                 |.+.+..+..+.+..+... ++...|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus       229 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  308 (317)
T 2y25_A          229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD  308 (317)
T ss_dssp             CSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             CccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEE
Confidence                                       2222333333333333333 445689999999999999999999999999999


Q ss_pred             EEEEEecc
Q psy1095         315 ASVAVEGR  322 (325)
Q Consensus       315 ~~l~V~~~  322 (325)
                      +.|.|..+
T Consensus       309 ~~l~V~~P  316 (317)
T 2y25_A          309 FTVSVFIP  316 (317)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            99999754

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=100.00  E-value=4.7e-30  Score=213.30  Aligned_cols=242  Identities=26%  Similarity=0.376  Sum_probs=184.9

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+... .++.+.. .++...|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            5799999999999999999999999999999999999999988654 3454433 4556789999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      |..+.....+.|.|...+.. ..|..........+..|+.+.|.|.+.+.|.  +.+.|++++..+.........  ..+
T Consensus        83 n~~g~~~~~~~l~V~~~p~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~--~~~  157 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVSIKIPFSGKPD--PVITWQKGQDLIDNNGHYQVI--VTR  157 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEEE-CCCHHHHSSCCEEEETTCCEEEEEEEEEESC--CEEEEEESSSBCCSSSSCEEE--ECS
T ss_pred             cCCCCccceEEEEEecCCcc-CCCccccccccEEecCCCEEEEEEEECCCCC--CEEEEEECCEECCCCCcEEEE--EcC
Confidence            99988888888888765332 1222223334567888999999999999988  899999999887655444332  222


Q ss_pred             CcceeEEEEEeCC-CCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecC-------------------CCCc------
Q psy1095         222 KENLVIARLKIPH-VYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLT-------------------SDGR------  275 (325)
Q Consensus       222 ~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~-------------------~~~~------  275 (325)
                          ....|.|.+ +..+|.|.|+|.|.|..|.....+.|.|...+..+..                   .++.      
T Consensus       158 ----~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y  233 (305)
T 2nzi_A          158 ----SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNY  233 (305)
T ss_dssp             ----SEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEE
T ss_pred             ----CceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEE
Confidence                246899999 9999999999999999999888888888654432110                   1111      


Q ss_pred             -----------eEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeE
Q psy1095         276 -----------LNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY  314 (325)
Q Consensus       276 -----------~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  314 (325)
                                 +..........|.|.++...+.|.|+|.|.|..|....+
T Consensus       234 ~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          234 IVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             EEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             EEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence                       000111112468999999999999999999999987654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.98  E-value=1.8e-32  Score=233.59  Aligned_cols=262  Identities=13%  Similarity=0.144  Sum_probs=184.6

Q ss_pred             CCCCCCcccCCCCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCc
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR  111 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~  111 (325)
                      ..+|.|.+++++|+|.|+|.+.+... ...+... .+...|. ..+.+|+++.|.|.+.+.|.|.+.|++++..+.    
T Consensus        66 ~~~L~I~~v~~~D~G~Y~C~~~n~~~-~~~l~V~-~~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~----  138 (363)
T 1wio_A           66 NFPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVF-GLTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI----  138 (363)
T ss_dssp             CCCEEECSCCGGGCEEEEEEETTEEE-EEEEEEE-EEEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCEE----
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCC-cEEEEEE-eCCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc----
Confidence            55799999999999999999988743 1111110 1333333 357899999999999889999999999875431    


Q ss_pred             EEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEe-
Q psy1095         112 VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV-  190 (325)
Q Consensus       112 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-  190 (325)
                         .   ....|.|.+++.+|+|.|+|.+.+..+.....+.+.|...+..   +      ....+.+|+.+.|.|.+.+ 
T Consensus       139 ---~---~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~---~------~~~~~~~G~~v~l~C~~~~~  203 (363)
T 1wio_A          139 ---Q---GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA---S------SIVYKKEGEQVEFSFPLAFT  203 (363)
T ss_dssp             ---E---ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCS---E------EEEEEETBCCEEEECCCCCC
T ss_pred             ---c---cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCC---C------CceEEecCCEEEEEEEEecc
Confidence               1   1246999999999999999999998777777777777654321   1      3456788999999998877 


Q ss_pred             ----cCCCCCeeEEeeCCEEeccC--------CCCceEEEecCC----cceeEEEEEeCCCCCCCCeEEEEEEEeC--CC
Q psy1095         191 ----VPPNDHDISWFRNNRLIKLD--------SDMKPEVQVDSK----ENLVIARLKIPHVYPEDEGEFTCRVANE--LG  252 (325)
Q Consensus       191 ----~~~~~~~~~W~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~  252 (325)
                          .|.  +.+.|++++..+...        ............    .......|.|.+++.+|+|.|+|.|.|.  .|
T Consensus       204 ~~~~~P~--p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g  281 (363)
T 1wio_A          204 VEKLTGS--GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG  281 (363)
T ss_dssp             CCSSCEE--EEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTC
T ss_pred             cccCCCc--eeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcC
Confidence                555  789999998876542        211111000000    0001248999999999999999999999  99


Q ss_pred             cEEeEEEEEEEeeCCeecC--------CCCc--eEEEEeCC-----EEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEE
Q psy1095         253 EVVTSACLIVDVVKGKDLT--------SDGR--LNIITVGG-----TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV  317 (325)
Q Consensus       253 ~~~~~~~l~v~~~~~~~~~--------~~~~--~~~~~~~~-----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  317 (325)
                      .....+.|.|....+..+.        +...  +. +..++     ...|.|.++..+|+|.|+|.|.|. |....+..|
T Consensus       282 ~~~~~~~l~V~~v~g~~~~l~C~~~g~p~p~~~i~-W~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~  359 (363)
T 1wio_A          282 KLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLS-LKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNI  359 (363)
T ss_dssp             CEEEEEEEEEEEECCCSSSEEEEEESSCCTTCCEE-EECSSSSCSEEESSSEEEESSCCSEEEEEEECSS-SSCCEEEEE
T ss_pred             eEEEEEeEEEEEecCCCeeEEEEEccccCCCccEE-EEeCCCceeeeeeeeeeeeccccceeEEEEEecC-CeEEEecce
Confidence            8888888888755544332        1111  22 22222     345888999999999999999964 555555666


Q ss_pred             EE
Q psy1095         318 AV  319 (325)
Q Consensus       318 ~V  319 (325)
                      .|
T Consensus       360 ~V  361 (363)
T 1wio_A          360 KV  361 (363)
T ss_dssp             EE
T ss_pred             Ee
Confidence            55

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.98  E-value=3.9e-31  Score=226.94  Aligned_cols=231  Identities=23%  Similarity=0.342  Sum_probs=175.3

Q ss_pred             eeeecccCCCCcccCCC--CCCCCCCCCCcccCCCCCCCccccccccccccccc---------------CCCCeeE-ecC
Q psy1095          11 LSVKLTRPSGLMSGHST--PRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRL---------------TSSPRFY-AVP   72 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~---------------~~~p~~~-~~~   72 (325)
                      +.++|..++........  .......|.|.+++.+|+|.|+|.+.+........               ..+|.+. ..|
T Consensus       133 ~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~  212 (384)
T 3kld_A          133 LSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP  212 (384)
T ss_dssp             EEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECC
T ss_pred             eEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCC
Confidence            45677766543322111  12234578999999999999999998765432111               1223332 345


Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEeeC-CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKD-GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      ....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....+  .  ......|.|.+++.+|+|.|+|.+.|..|......
T Consensus       213 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  288 (384)
T 3kld_A          213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR--R--HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG  288 (384)
T ss_dssp             SEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE--E--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce--e--cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence            667788999999999999999999999995 444443221  1  12335799999999999999999999999888888


Q ss_pred             EEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEE
Q psy1095         152 RLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       152 ~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (325)
                      .|.|...      |.+...+....+..|+.+.|.|.+.|.|.  +.+.|++++..+....+...   ..       ..|.
T Consensus       289 ~l~v~~~------P~~~~~~~~~~v~~g~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~~~---~~-------~~L~  350 (384)
T 3kld_A          289 QLTFYAQ------PNWVQIINDIHVAMEESVFWECKANGRPK--PTYRWLKNGDPLLTRDRIQI---EQ-------GTLN  350 (384)
T ss_dssp             EEEEEEE------EEEEECCCCEEECTTCCEEEECEEEEESC--CEEEEEETTEECCCBTTEEE---ET-------TEEE
T ss_pred             EEEEecC------CccccCCCceEecCCCCEEEEeECCccCC--CeEEEEECCEECCCCccEEE---eC-------CEEE
Confidence            8888764      55555566778899999999999999998  89999999998865444321   22       3799


Q ss_pred             eCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         232 IPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       232 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       351 i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            99999999999999999999999999999883

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.98  E-value=1.3e-30  Score=235.66  Aligned_cols=275  Identities=17%  Similarity=0.174  Sum_probs=186.8

Q ss_pred             CCCCcccCCCCCCCccccccccccc-----ccccCCCCeeEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCCeeCC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR-----TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKPAT  107 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~-----~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~~~  107 (325)
                      +|.|.+++.+|+|.|+|.+.+....     .+.+..+|.+...+....+.+|+++.|.|.+.+. |.+.+.|+|++....
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~  155 (585)
T 2ocw_A           76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYP  155 (585)
T ss_pred             EEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCc
Confidence            5889999999999999998765432     2445578888888888899999999999999864 467899999875421


Q ss_pred             C-------------CCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecC
Q psy1095         108 P-------------NARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL  171 (325)
Q Consensus       108 ~-------------~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~  171 (325)
                      .             ..++.+...+   +..+|.|.+++.+|+|.|+|.+.|..+.....+.|.|...+     |.     
T Consensus       156 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-----p~-----  225 (585)
T 2ocw_A          156 VLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE-----PE-----  225 (585)
T ss_pred             eEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC-----Cc-----
Confidence            0             2344443322   23479999999999999999999988887778888887541     22     


Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEe-eCCE---EeccCC-------CCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWF-RNNR---LIKLDS-------DMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~-~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                       ...+.+|+.+.|.|.+.+.++..+.+.|+ +++.   .+....       ..+......  .......|.|.+++.+|+
T Consensus       226 -~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~L~i~~v~~~d~  302 (585)
T 2ocw_A          226 -LVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQ--DKDGSFSVVITGLRKEDA  302 (585)
T ss_pred             -eeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeecc--CCCcEEEEEEccCChhhC
Confidence             33567899999999974333222678886 7773   121110       111111110  001234799999999999


Q ss_pred             eEEEEEEEeCCCcEE----eEEEEEEEeeCCeecC---------------------C--------------CC-------
Q psy1095         241 GEFTCRVANELGEVV----TSACLIVDVVKGKDLT---------------------S--------------DG-------  274 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~----~~~~l~v~~~~~~~~~---------------------~--------------~~-------  274 (325)
                      |.|+|.|.|..+...    ..+.|.|...+.....                     .              ++       
T Consensus       303 G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~  382 (585)
T 2ocw_A          303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVD  382 (585)
T ss_pred             EEEEEEEEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeee
Confidence            999999999533321    4455555322110000                     0              11       


Q ss_pred             -----------ceEEEE--eCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095         275 -----------RLNIIT--VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR  322 (325)
Q Consensus       275 -----------~~~~~~--~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  322 (325)
                                 ++.+..  .++..+|.|.++..+|+|.|+|.| |..|.....+.|.|...
T Consensus       383 ~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~  442 (585)
T 2ocw_A          383 SEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEG  442 (585)
T ss_pred             ecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecC
Confidence                       111110  122345999999999999999999 99999999999999763

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=3.8e-31  Score=231.75  Aligned_cols=274  Identities=12%  Similarity=0.118  Sum_probs=188.0

Q ss_pred             CCCCCcccCCCCCCCccccccccccc-----ccccCCCCeeE-ecCCceEecCCCeEEEEEEEEecCCC---eeEEeeCC
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIR-----TRRLTSSPRFY-AVPHNKICDLGDTVRFQCSVTGQPAP---WTSWSKDG  103 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~-----~~~~~~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~p~~---~v~W~~~~  103 (325)
                      ..|.|.+++. |+| |+|.+.+....     ...+..+|.+. ..|.+..+.+|+++.|.|.+.+.|.+   .|+|+|++
T Consensus        50 ~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g  127 (450)
T 1z7z_I           50 KVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE  127 (450)
T ss_dssp             EEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred             eEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCC
Confidence            4778999988 999 99999643321     22333456554 66777889999999999999998877   89999999


Q ss_pred             eeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE--------EEEEEEEECCCcccCCCeeeecCcCee
Q psy1095         104 KPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE--------ATARLEIMDPRAIISRPKVLNGLENLR  175 (325)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--------~~~~l~v~~~~~~~~~p~~~~~~~~~~  175 (325)
                      ..+......   .......|.|.+++.+|+|.|+|.+.|..+...        ....+.|...+  ..+|.+..   ...
T Consensus       128 ~~l~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~--~~~p~~~~---~~~  199 (450)
T 1z7z_I          128 KELKREPAV---GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP--ATPPQLVS---PRV  199 (450)
T ss_dssp             EEEEEEECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCC--SSCCEEEC---CSE
T ss_pred             EEeeccccc---ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccC--CCCCEecC---cee
Confidence            877532211   122345799999999999999999998755211        23344444321  12344322   257


Q ss_pred             EecCCcEEEEEEEEec-CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe--EEEEEEEeCCC
Q psy1095         176 CCDGDSVTFECQVQVV-PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG--EFTCRVANELG  252 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G--~Y~C~~~~~~~  252 (325)
                      +.+|+.+.|.|.+.+. |...+.+.|++++..+...    ..  ..+.  .....+.+ +++.+|+|  .|+|.+.|..+
T Consensus       200 v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~----~~--~~~~--~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g  270 (450)
T 1z7z_I          200 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT----VT--YGND--SFSAKASV-SVTAEDEGTQRLTCAVILGNQ  270 (450)
T ss_dssp             EETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCE----EE--EETT--EEEEEEEE-ECCGGGCEEEEEEEEEEETTE
T ss_pred             EEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCce----EE--ecCC--ceeEEEEE-EeEhhhCCcEEEEEEEccCCc
Confidence            8899999999999988 5222899999999887641    11  1111  01122333 77899999  99999999999


Q ss_pred             cEEeEEEEEEEeeCCeecC-------CCCceEE-----------------EEeCCEEEEEEcCCCCCCCeEEEEEEECCC
Q psy1095         253 EVVTSACLIVDVVKGKDLT-------SDGRLNI-----------------ITVGGTSVLTIEDITGDDSGKYQVHVSNQH  308 (325)
Q Consensus       253 ~~~~~~~l~v~~~~~~~~~-------~~~~~~~-----------------~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~  308 (325)
                      .....+.|.|...+.+.+.       .+..+.+                 ...+....|.|..+..+|+|.|+|.|.|..
T Consensus       271 ~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~p~p~i~W~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  350 (450)
T 1z7z_I          271 SQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEV  350 (450)
T ss_dssp             EEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC----------------CCCCCEEEECCGGGTTCEEEEEEEEEE
T ss_pred             cEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecCCCCEeEECCEEcCCCCceEEEEEecCcccCCceEEEEEEcCC
Confidence            8888888888653332221       1111111                 111223469999999999999999999866


Q ss_pred             e----eEEeEEEEEEecccCC
Q psy1095         309 G----SDSCYASVAVEGRKII  325 (325)
Q Consensus       309 g----~~~~~~~l~V~~~p~i  325 (325)
                      |    .....+.|.|..+|.|
T Consensus       351 ~g~~~~~~~~~~l~V~~~P~~  371 (450)
T 1z7z_I          351 AGQLIHKNQTRELRVLYGPRL  371 (450)
T ss_dssp             TTEEEEEEEEEECEEEEEEEC
T ss_pred             CCcccccceeEEEEEecCCce
Confidence            5    4457789999888754

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.97  E-value=2.3e-29  Score=216.29  Aligned_cols=243  Identities=19%  Similarity=0.365  Sum_probs=182.8

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeCCC-----CCcEEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPATP-----NARVTIREKEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      +|.|.. +.+..+.+|+++.|.|.+.|.|.+.++|+|+  +..+..     ..++.+........|.|.+++.+|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            467766 5667788899999999999999999999999  887754     35666666566788999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEE
Q psy1095         138 IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV  217 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  217 (325)
                      |.+.|..|.....+.|.|..+      |.+........+..|+.+.|.|.+.+.|+  +.+.|++++..+..........
T Consensus        80 C~a~n~~g~~~~~~~l~V~~~------P~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~i~W~~~g~~l~~~~~~~~~~  151 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEYA------PKFISNQTIYYSWEGNPINISCDVKSNPP--ASIHWRRDKLVLPAKNTTNLKT  151 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEEE------EEECCSCCEEEECTTCCEEEEECEEEESC--CEEEEEETTEESSCTTCTTEEE
T ss_pred             EEEEeCCCCcceEEEEEEEeC------CEEecCcceEEeccCCEEEEEEEEEecCC--CeEEEEECCccCCcccCceEEE
Confidence            999999998888888998865      34433333346788999999999999998  8999999999887655333332


Q ss_pred             EecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCee--c------------------CCCC-c-
Q psy1095         218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD--L------------------TSDG-R-  275 (325)
Q Consensus       218 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~--~------------------~~~~-~-  275 (325)
                      ...+    ....|.|.++..+|+|.|+|.|.|..|.....+.+.+...+..+  +                  ..++ . 
T Consensus       152 ~~~~----~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi  227 (389)
T 2jll_A          152 YSTG----RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPI  227 (389)
T ss_dssp             EECS----SCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCE
T ss_pred             eccC----CEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcce
Confidence            2332    34689999999999999999999999988776666553222211  0                  0111 1 


Q ss_pred             --eEEEE-------------eCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEe
Q psy1095         276 --LNIIT-------------VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       276 --~~~~~-------------~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  320 (325)
                        +.+..             ......|.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       228 ~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~  287 (389)
T 2jll_A          228 HHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ  287 (389)
T ss_dssp             EEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             EEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEE
Confidence              11111             1122479999999999999999999999977655444443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=4.1e-30  Score=214.27  Aligned_cols=239  Identities=17%  Similarity=0.278  Sum_probs=169.4

Q ss_pred             ceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095          74 NKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR  152 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  152 (325)
                      ...+.+|+.+.|.|... +.|.+.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.+.|..+... +..
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~   88 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYL   88 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEE
Confidence            45688999999999875 5788999999999999888888888777778999999999999999999998776433 444


Q ss_pred             EEEECCCccc------CCCeeeecCc-CeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcc
Q psy1095         153 LEIMDPRAII------SRPKVLNGLE-NLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN  224 (325)
Q Consensus       153 l~v~~~~~~~------~~p~~~~~~~-~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  224 (325)
                      +.|.......      .+|.+..... ...+.+|+.+.|.|.+. +.|.  +.+.|++++..+....++.......+   
T Consensus        89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~--~~v~W~~~~~~i~~~~~~~~~~~~~~---  163 (312)
T 2y23_A           89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGN--AKVNYIFNEKEIFEGPKYKMHIDRNT---  163 (312)
T ss_dssp             ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSS--CEEEEEETTEEECSSSSCEEEEETTT---
T ss_pred             EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCC--CEEEEEECCEECeeCCcEEEEEccCC---
Confidence            5543210000      0233333222 56788999999999998 6676  89999999999877655443322112   


Q ss_pred             eeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE-------------------------------------------E
Q psy1095         225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL-------------------------------------------I  261 (325)
Q Consensus       225 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l-------------------------------------------~  261 (325)
                       ....|.|.+++.+|+|.|+|.+.+..........+                                           .
T Consensus       164 -~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~  242 (312)
T 2y23_A          164 -GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLK  242 (312)
T ss_dssp             -TEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEE
T ss_pred             -CEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEE
Confidence             34679999999999999999997654433221111                                           1


Q ss_pred             E------------EeeCCeecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         262 V------------DVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       262 v------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                      .            |.+++..+..+.+..+  .++...|.|.++..+|+|.|+|.|.|..|..+.++.|.|++
T Consensus       243 C~~~~~p~~~~v~W~~~g~~~~~~~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~~  312 (312)
T 2y23_A          243 CKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA  312 (312)
T ss_dssp             EEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSCC
T ss_pred             EEEcCCCCCCEEEEeeCCEECCCCCcEEE--ECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEecC
Confidence            0            1111111111111111  13446899999999999999999999999999999998753

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=5.5e-30  Score=224.38  Aligned_cols=276  Identities=18%  Similarity=0.183  Sum_probs=179.1

Q ss_pred             eeeecccCCCCcccCCCCC-CCCCCCCCcccCCCCCCCcccccccccccc-------------cccC----CCCeeEecC
Q psy1095          11 LSVKLTRPSGLMSGHSTPR-STPRSTPPRSISPLSSRTFTPYSLNSAIRT-------------RRLT----SSPRFYAVP   72 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-------------~~~~----~~p~~~~~~   72 (325)
                      +.++|.+++..+....... .....|.|.+++.+|+|.|+|.+.+..+..             ..+.    .+|.+..  
T Consensus       119 ~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~--  196 (450)
T 1z7z_I          119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS--  196 (450)
T ss_dssp             EEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC--
T ss_pred             cEEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC--
Confidence            4678888877665443221 123478899999999999999998764421             1111    1222221  


Q ss_pred             CceEecCCCeEEEEEEEEec-C--CCeeEEeeCCeeCCCCCcEEEEecCCeEEEE-EccCCCCCCe--EEEEEEEeCCee
Q psy1095          73 HNKICDLGDTVRFQCSVTGQ-P--APWTSWSKDGKPATPNARVTIREKEDLRFLE-ISEVTLEDAG--LYTIKVENNYGS  146 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~-p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~-i~~~~~~d~G--~Y~C~~~~~~~~  146 (325)
                       +..+.+|+.+.|.|.+.+. |  .+.+.|++++..+..  +....  ++...+. ..+++.+|+|  .|+|.+.|..+.
T Consensus       197 -~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~~--~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~  271 (450)
T 1z7z_I          197 -PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYG--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQS  271 (450)
T ss_dssp             -CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEEE--TTEEEEEEEEECCGGGCEEEEEEEEEEETTEE
T ss_pred             -ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEec--CCceeEEEEEEeEhhhCCcEEEEEEEccCCcc
Confidence             1568899999999999987 7  789999999998865  22222  2222221 2278999999  999999999998


Q ss_pred             EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCccee
Q psy1095         147 VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV  226 (325)
Q Consensus       147 ~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (325)
                      ......|.|...+    +|.+...  ...+.+|+.+.|.|.+.  |.  +.+.|  +|..+....              .
T Consensus       272 ~~~~~~l~V~~~~----~p~i~~~--~~~v~~G~~v~l~C~~~--p~--p~i~W--~g~~~~~~~--------------~  325 (450)
T 1z7z_I          272 QETLQTVTIYSFP----APNVILT--KPEVSEGTEVTVKCEAH--PR--AKVTL--NGVPAQPLG--------------P  325 (450)
T ss_dssp             EEEEEEEEEECCC----CCEEEES--CSEEETTCEEEEEEEC----------------------C--------------C
T ss_pred             EEEEEEEEEecCC----CCeEecC--CeeEeCCCcEEEEEecC--CC--CEeEE--CCEEcCCCC--------------c
Confidence            8888888888752    2555433  45789999999999997  55  78999  666652111              1


Q ss_pred             EEEEEeCCCCCCCCeEEEEEEEeCCC-c---EEeEEEEEEEeeCCeecCC---------CCce-------------EEEE
Q psy1095         227 IARLKIPHVYPEDEGEFTCRVANELG-E---VVTSACLIVDVVKGKDLTS---------DGRL-------------NIIT  280 (325)
Q Consensus       227 ~~~l~i~~~~~~d~G~Y~C~~~~~~~-~---~~~~~~l~v~~~~~~~~~~---------~~~~-------------~~~~  280 (325)
                      ...|.|.++..+|+|.|+|.|.|..+ .   ....+.|.|...+......         +...             -.+.
T Consensus       326 ~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~  405 (450)
T 1z7z_I          326 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCL  405 (450)
T ss_dssp             CCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred             eEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEE
Confidence            13699999999999999999997665 2   3355666664433211110         0000             1112


Q ss_pred             eCCE------EEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095         281 VGGT------SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR  322 (325)
Q Consensus       281 ~~~~------~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  322 (325)
                      .++.      ..+   .++.+|+|.|+|.|.|..|..+..+.|.|.++
T Consensus       406 ~~g~~~~~~g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          406 KDGTFPLPIGESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  450 (450)
T ss_dssp             ETTTEECCTTSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ECCcccCCCCCeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence            2221      112   57889999999999999999999999999864

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.97  E-value=2.3e-30  Score=213.68  Aligned_cols=239  Identities=17%  Similarity=0.228  Sum_probs=174.6

Q ss_pred             ceeeeccc-CCCCcccCCCC------CCCCCCCCCcccCCCCCCCccccccccccc------ccccCCCCeeEecCCceE
Q psy1095          10 SLSVKLTR-PSGLMSGHSTP------RSTPRSTPPRSISPLSSRTFTPYSLNSAIR------TRRLTSSPRFYAVPHNKI   76 (325)
Q Consensus        10 ~~~~~~~~-~~~~~~~~~~~------~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~~~p~~~~~~~~~~   76 (325)
                      ...+.|.+ ++..+......      .....+|.|.+++.+|+|.|+|.+.+..+.      .+.+..+|.+...|....
T Consensus        32 ~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~  111 (291)
T 1qz1_A           32 DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE  111 (291)
T ss_dssp             CCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEE
T ss_pred             CcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCccc
Confidence            35677877 44444322110      012357889999999999999999876532      234447888888888888


Q ss_pred             ecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC--cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee--EEEEEE
Q psy1095          77 CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS--VEATAR  152 (325)
Q Consensus        77 v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~  152 (325)
                      +.+|+.+.|.|.+.+.|.+.+.|++++..+....  ++.....   ..|.|.+++.+|+|.|+|.+.+..+.  ....+.
T Consensus       112 ~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~  188 (291)
T 1qz1_A          112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ  188 (291)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTT---SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred             ccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccC---CcEEEccCccccCeEEEEEEEecCCCceeeEEEE
Confidence            9999999999999999999999999998875432  3333222   35999999999999999999986532  334556


Q ss_pred             EEEECCCcccCCCeeeecCc--CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEE
Q psy1095         153 LEIMDPRAIISRPKVLNGLE--NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL  230 (325)
Q Consensus       153 l~v~~~~~~~~~p~~~~~~~--~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (325)
                      +.|..+      |.+.....  ...+..|+.+.|.|.+.+.|.  +.+.|++++..+..............    ....|
T Consensus       189 l~v~~~------p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~~~~~~~~----~~~~L  256 (291)
T 1qz1_A          189 VIVNVP------PTVQARQSIVNATANLGQSVTLVCDADGFPE--PTMSWTKDGEPIENEEEDDEKHIFSD----DSSEL  256 (291)
T ss_dssp             EEEEEE------EEEEESCSEEEEETTSCCCEEEEEEEEEESC--CEEEEEETTEECCCC--CCSSEEECT----TSCEE
T ss_pred             EEEecC------CcccccccccccccccCceEEEEEEEEEeCC--CcEEEEECCEECcCCCCCCcceEEcC----CCcEE
Confidence            666554      33333222  345678999999999999988  89999999998876542111111111    12589


Q ss_pred             EeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       231 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      .|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       257 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          257 TIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            999999999999999999999999888888885

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=225.94  Aligned_cols=237  Identities=15%  Similarity=0.199  Sum_probs=161.0

Q ss_pred             eeeecccCCCCcccCCCCC----CCC------CCCCCcccCCCCCCCccccccccccccc---------ccCCCCeeEec
Q psy1095          11 LSVKLTRPSGLMSGHSTPR----STP------RSTPPRSISPLSSRTFTPYSLNSAIRTR---------RLTSSPRFYAV   71 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~----~~~------~~l~i~~v~~~d~G~Y~c~~~~~~~~~~---------~~~~~p~~~~~   71 (325)
                      +.++|.+++..+.......    ...      ..|.|.+++.+|+|.|+|.+.+..+...         ....+|.+...
T Consensus       146 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~  225 (523)
T 2rcj_C          146 VTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPL  225 (523)
T ss_pred             eEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEec
Confidence            4678888887665432111    011      2588999999999999999987654321         12246666544


Q ss_pred             CCceEecCCCeEEEEEEEEec-CCC-eeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQ-PAP-WTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +....+.+|+.+.|.|.+.+. |.| .++|++++..+...........++    ...|.|.+++.+| |.|+|.+.|..+
T Consensus       226 ~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g  304 (523)
T 2rcj_C          226 APSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  304 (523)
T ss_pred             CCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCC
Confidence            444557899999999999886 877 899999998754211111111112    2479999999999 999999999988


Q ss_pred             eEEEEEEEEEECCCcccCCCee-eecCcCee-EecCCcEEEEEEEEecCCC--CCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         146 SVEATARLEIMDPRAIISRPKV-LNGLENLR-CCDGDSVTFECQVQVVPPN--DHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       146 ~~~~~~~l~v~~~~~~~~~p~~-~~~~~~~~-v~~g~~v~l~C~~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      .......+.+...      |.+ ...+.... +.+|+.+.|.|.+.+.++.  .+.+.|++++..+......... ...+
T Consensus       305 ~~~~~~~l~v~~~------P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~-~~~~  377 (523)
T 2rcj_C          305 NTKVDKRVEPLSL------PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPRE-QQYN  377 (523)
T ss_pred             CcceEEecCCCcC------ceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCce-ecCC
Confidence            7655555555432      333 22222233 6789999999999987642  2589999999988654432211 1122


Q ss_pred             CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      ......+.|.|.++..+|+|.|+|.|.|..+...
T Consensus       378 g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  411 (523)
T 2rcj_C          378 STYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAP  411 (523)
T ss_pred             CcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCc
Confidence            2233456799999999999999999998766543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=4.4e-31  Score=220.63  Aligned_cols=245  Identities=18%  Similarity=0.219  Sum_probs=181.7

Q ss_pred             eeeecccCCCCcccCCCCC--CCCCCCCCcccCCCCCCCcccccccccccc-----cccCCCCeeEecCCceEecCCCeE
Q psy1095          11 LSVKLTRPSGLMSGHSTPR--STPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSSPRFYAVPHNKICDLGDTV   83 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v   83 (325)
                      ..+.|.+++..+.......  ....+|.|.+++.+|+|.|+|.+.+..+..     +.+..+|.+...+....+.+|+.+
T Consensus        37 ~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~  116 (317)
T 2y25_A           37 THIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL  116 (317)
T ss_dssp             CEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCC
T ss_pred             CEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCceecccCCCe
Confidence            4577887776665443322  223578899999999999999997765432     112223333333444556788888


Q ss_pred             EEEEEEEe----------cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095          84 RFQCSVTG----------QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL  153 (325)
Q Consensus        84 ~l~C~~~~----------~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  153 (325)
                      .|.|.+.+          .|.+.+.|++++..+....++.....+....|.|.+++.+|+|.|+|.+.|..+.....+.+
T Consensus       117 ~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  196 (317)
T 2y25_A          117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL  196 (317)
T ss_dssp             EEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEE
Confidence            88888766          68899999999999988888887777777889999999999999999999988877777766


Q ss_pred             EEECC--------------CcccCCCeeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEE
Q psy1095         154 EIMDP--------------RAIISRPKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ  218 (325)
Q Consensus       154 ~v~~~--------------~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  218 (325)
                      .+...              ......|.+... +....+..|+.+.|.|.+.+.|.  +.+.|++++..+.........  
T Consensus       197 ~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~~~--  272 (317)
T 2y25_A          197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP--PEVSWLKNEKALASDDHCNLK--  272 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSC--CEEEEEESSSEECCCSSEEEC--
T ss_pred             eeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCC--CEEEEEECCEeCCCCCcEEEE--
Confidence            64310              000123444433 33467889999999999999988  899999999988765543222  


Q ss_pred             ec-CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         219 VD-SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       219 ~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      .. +    ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       273 ~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  314 (317)
T 2y25_A          273 FEAG----RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  314 (317)
T ss_dssp             CBTT----TEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcCC----CEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            22 2    34689999999999999999999999999988888885

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=1.8e-31  Score=224.72  Aligned_cols=242  Identities=24%  Similarity=0.347  Sum_probs=107.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE  148 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  148 (325)
                      ..|....+.+|+++.|.|.+.+. |.+.+.|++++..+....++...    ...|.|.+++.+|+|.|+|.+.+. +...
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~   87 (334)
T 1ry7_B           13 GQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQRLT-QRVL   87 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEec----cceEEEeecccccCEEEEEEEEeC-CeEE
Confidence            34777889999999999999876 67899999999988766555432    246999999999999999999988 6666


Q ss_pred             EEEEEEEECCCccc----------------CCCeeeec----CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEec
Q psy1095         149 ATARLEIMDPRAII----------------SRPKVLNG----LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK  208 (325)
Q Consensus       149 ~~~~l~v~~~~~~~----------------~~p~~~~~----~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~  208 (325)
                      ..+.|.|...+...                .+|.+...    .....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.
T Consensus        88 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~~~~~~  165 (334)
T 1ry7_B           88 CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPT--PSISWLKNGREFR  165 (334)
T ss_dssp             -------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSC--CEEECCBTTBCCC
T ss_pred             EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCC--CeEEEEECCEECc
Confidence            66677776543211                12333221    12356788999999999998877  8999999998876


Q ss_pred             cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC--eecC---------------
Q psy1095         209 LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG--KDLT---------------  271 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~--~~~~---------------  271 (325)
                      ......... ...    ....|.|.+++.+|+|.|+|.+.|..+.....+.|.|.....  +.+.               
T Consensus       166 ~~~~~~~~~-~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v  240 (334)
T 1ry7_B          166 GEHRIGGIK-LRH----QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV  240 (334)
T ss_dssp             TTSSTTCCC-CCT----TTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCE
T ss_pred             cccccccee-ccc----ceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCE
Confidence            544321110 111    124799999999999999999999999888888888854321  1110               


Q ss_pred             -------CCCceE-EEEe----C-------C------------------EEEEEEcCCCCCCCeEEEEEEECCCeeEEeE
Q psy1095         272 -------SDGRLN-IITV----G-------G------------------TSVLTIEDITGDDSGKYQVHVSNQHGSDSCY  314 (325)
Q Consensus       272 -------~~~~~~-~~~~----~-------~------------------~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  314 (325)
                             ...... .+..    +       +                  ...|.|.++..+|+|.|+|.|.|..|....+
T Consensus       241 ~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  320 (334)
T 1ry7_B          241 EFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHS  320 (334)
T ss_dssp             EECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEE
T ss_pred             EEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEE
Confidence                   000111 1111    0       0                  1269999999999999999999999999999


Q ss_pred             EEEEEeccc
Q psy1095         315 ASVAVEGRK  323 (325)
Q Consensus       315 ~~l~V~~~p  323 (325)
                      +.|.|...|
T Consensus       321 ~~l~V~~~~  329 (334)
T 1ry7_B          321 AWLVVLPAE  329 (334)
T ss_dssp             EEEEEECSC
T ss_pred             EEEEEEECC
Confidence            999998765

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.97  E-value=9.6e-30  Score=219.63  Aligned_cols=233  Identities=25%  Similarity=0.361  Sum_probs=180.4

Q ss_pred             eeecccCCCCcccCCC----CCCCCCCCCCcccCCCCCCCcccccccccccc------cccCCCC------eeEecCCce
Q psy1095          12 SVKLTRPSGLMSGHST----PRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT------RRLTSSP------RFYAVPHNK   75 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~----~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p------~~~~~~~~~   75 (325)
                      .+.|.+++..+.....    ......+|.|.+++.+|+|.|+|.+.+..+..      ..+..+|      .+...+...
T Consensus       152 ~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~  231 (403)
T 3laf_A          152 TIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV  231 (403)
T ss_dssp             EEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCE
T ss_pred             eEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCce
Confidence            6778887776642211    11234578999999999999999998754422      1222222      345566777


Q ss_pred             EecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      .+.+|+.+.|.|.+.+.|.+.+.|++++..+...........+  ..|.|.+++.+|+|.|+|.+.|..+.....+.|.|
T Consensus       232 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  309 (403)
T 3laf_A          232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAELTV  309 (403)
T ss_dssp             EEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCc--cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEE
Confidence            8889999999999999999999999999988654332222222  36999999999999999999999998888888888


Q ss_pred             ECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         156 MDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       156 ~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      ..+      |.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.........  ..       ..|.|.++
T Consensus       310 ~~~------p~~~~~~~~~~~~~g~~v~l~C~~~g~p~--p~v~W~~~g~~~~~~~~~~~~--~~-------~~L~i~~v  372 (403)
T 3laf_A          310 LVP------PWFLNHPSNLYAYESMDIEFECAVSGKPV--PTVNWMKNGDVVIPSDYFQIV--GG-------SNLRILGV  372 (403)
T ss_dssp             EEE------EEEEECCCCEECCTTCCEEECCEEEEESC--CEEEEEETTEECCCSSSEEEE--TT-------TEEEESSC
T ss_pred             ECC------CcEeecCcceEEecCCeEEEEEEEeeccC--CEEEEEECCEECCCCCcEEEe--cC-------ccEEEecc
Confidence            765      55566666677889999999999999998  899999999988655433221  22       37999999


Q ss_pred             CCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         236 YPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       373 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          373 VKSDEGFYQCVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             ccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence            9999999999999999999998888773

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.97  E-value=4.2e-30  Score=213.56  Aligned_cols=233  Identities=19%  Similarity=0.263  Sum_probs=167.9

Q ss_pred             eeecccCCCCcccCCCC-----CCCCCCCCCcccCC-CCCCCcccccccccccc-----cccCC-------CCeeEecCC
Q psy1095          12 SVKLTRPSGLMSGHSTP-----RSTPRSTPPRSISP-LSSRTFTPYSLNSAIRT-----RRLTS-------SPRFYAVPH   73 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~v~~-~d~G~Y~c~~~~~~~~~-----~~~~~-------~p~~~~~~~   73 (325)
                      .+.|.+++..+......     ......|.|.+++. +|+|.|+|.+.+..+..     +.+..       .|.+...|.
T Consensus        37 ~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~  116 (304)
T 2yd9_A           37 RVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ  116 (304)
T ss_dssp             EEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCC
T ss_pred             eEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCc
Confidence            67888887766443211     11124688999997 99999999998765432     12222       277888888


Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC---cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA---RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT  150 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  150 (325)
                      ...+.+|+.+.|.|.+.+.|.+.+.|++++..+....   ++....   ...|.|.+++.+|+|.|+|.+.|..+.....
T Consensus       117 ~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  193 (304)
T 2yd9_A          117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR---SGALQIESSEETDQGKYECVATNSAGVRYSS  193 (304)
T ss_dssp             CEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECT---TSCEEECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             cEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCC---CeEEEEccCCcccCEEEEEEEEeCCCCEEec
Confidence            8889999999999999999999999999999886532   222222   2369999999999999999999998865532


Q ss_pred             -EEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEE
Q psy1095         151 -ARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR  229 (325)
Q Consensus       151 -~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (325)
                       ..+.|...   ..+|.+...+....+.+|+.+.|.|.+.|.|.  +.+.|++++..+.......     .     ....
T Consensus       194 ~~~l~v~~~---~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~--p~v~W~~~~~~l~~~~~~~-----~-----~~~~  258 (304)
T 2yd9_A          194 PANLYVRVQ---NVAPRFSILPMSHEIMPGGNVNITCVAVGSPM--PYVKWMQGAEDLTPEDDMP-----V-----GRNV  258 (304)
T ss_dssp             CEEEEEECC---CEEEEEEECCCCBCCCTTCCEEEEEEEEEESC--CEEEEEETTEECSCSSSCC-----B-----SEEE
T ss_pred             cEEEEEEee---ccCCcEEecCCceEEcCCCeEEEEEEEeeeCC--CEEEEEECCEECCCccccc-----C-----CcEE
Confidence             45555432   12356666666677889999999999999988  8999999999886554321     1     2346


Q ss_pred             EEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEe
Q psy1095         230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       230 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      |.|.++  +|+|.|+|.|.|..|.....+.|.|..
T Consensus       259 L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~  291 (304)
T 2yd9_A          259 LELTDV--KDSANYTCVAMSSLGVIEAVAQITVKS  291 (304)
T ss_dssp             EEECSC--CSCEEEEEEEEETTEEEEEEEEEC---
T ss_pred             EEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            777776  589999999999999999888888843

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.97  E-value=3.6e-29  Score=216.63  Aligned_cols=259  Identities=12%  Similarity=0.081  Sum_probs=145.8

Q ss_pred             CCCCCCcccccccccccc------cc----------c--CC-C--CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEe
Q psy1095          42 PLSSRTFTPYSLNSAIRT------RR----------L--TS-S--PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWS  100 (325)
Q Consensus        42 ~~d~G~Y~c~~~~~~~~~------~~----------~--~~-~--p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~  100 (325)
                      .+|.|.|.|...+.....      ..          +  .. |  +.++..|....+.+|+++.|.|.+.+.|.+.+.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~   83 (423)
T 3qs7_E            4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV   83 (423)
T ss_dssp             ----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEEE
T ss_pred             cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEE
Confidence            468999999986652211      10          0  11 1  34556666888999999999999999999999999


Q ss_pred             eCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCC
Q psy1095         101 KDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD  180 (325)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~  180 (325)
                      +++..+.....+.. ......+|.|.+++.+|+|.|+|.+.|..+.....+.|.|...+.      +. ...+..+..|+
T Consensus        84 ~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~------~~-~~~p~~~~~~~  155 (423)
T 3qs7_E           84 FKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLL------YT-LRRPYFRKMEN  155 (423)
T ss_dssp             ETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----------C-EEEEEEEECSS
T ss_pred             ECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCcc------cc-ccCCcEeccCC
Confidence            99887654322211 112235699999999999999999999988887788888865422      11 11122345688


Q ss_pred             cEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC-CCCCCCCeEEEEEEEeCCCcEEe-EE
Q psy1095         181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP-HVYPEDEGEFTCRVANELGEVVT-SA  258 (325)
Q Consensus       181 ~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~~~~~~~~~~~-~~  258 (325)
                      .+.|.|.+.|.|.  +.+.|++++..+.......    ..+       .+... .+...|+|.|+|.|.|..|.... .+
T Consensus       156 ~~~L~C~a~G~P~--P~i~W~k~~~~~~~~~~~~----~~~-------~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~  222 (423)
T 3qs7_E          156 QDALVCISESVPE--PIVEWVLCDSQGESCKEES----PAV-------VKKEEKVLHELFGTDIRCCARNELGRECTRLF  222 (423)
T ss_dssp             SSCEEEEEEESSC--CEEEEEEC-----------------C-------EEECCSEECCCCSSCEEEEEECSSCEEEEECE
T ss_pred             ceEEEEEEeeecC--CeEEEEECCCCCccccccc----ccc-------ccccceEEecccCeEEEEEEEcCCCCcceeeE
Confidence            8899999999998  8999999887543211000    000       01111 11578999999999999887644 23


Q ss_pred             EEEEEeeC-----------------------------------CeecCCCCceEE-EE-----eCCEEEEEEcCCCCCCC
Q psy1095         259 CLIVDVVK-----------------------------------GKDLTSDGRLNI-IT-----VGGTSVLTIEDITGDDS  297 (325)
Q Consensus       259 ~l~v~~~~-----------------------------------~~~~~~~~~~~~-~~-----~~~~~~l~i~~v~~~d~  297 (325)
                      .|.|...+                                   +..+........ ..     ......|.|.++..+|+
T Consensus       223 ~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  302 (423)
T 3qs7_E          223 TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT  302 (423)
T ss_dssp             EEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTC
T ss_pred             EEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHC
Confidence            44432111                                   111100000000 00     01123699999999999


Q ss_pred             eEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         298 GKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       298 G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                      |.|+|.|.|.   .+..+.|.|..+|.
T Consensus       303 G~Y~C~A~N~---~~~~~~L~V~~~p~  326 (423)
T 3qs7_E          303 GYYTCSSSKH---PSQSALVTIVEKGF  326 (423)
T ss_dssp             EEEEEEETTE---EEEEEEEEEESSCE
T ss_pred             EEEEEEEecC---CCceEEEEEEeCCc
Confidence            9999999998   67778888887764

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=1.7e-30  Score=218.85  Aligned_cols=254  Identities=24%  Similarity=0.333  Sum_probs=143.7

Q ss_pred             eeeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCcccccccccccc-----cccCC---------------------
Q psy1095          11 LSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTS---------------------   64 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~---------------------   64 (325)
                      ..+.|.+++..+...........+|.|.+++.+|+|.|+|.+.+. +..     +.+..                     
T Consensus        39 ~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  117 (334)
T 1ry7_B           39 GPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDT  117 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccC
Confidence            367888888777655555555678999999999999999999876 211     11211                     


Q ss_pred             -CCeeEec----CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEE-EEecCCeEEEEEccCCCCCCeEEEE
Q psy1095          65 -SPRFYAV----PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-IREKEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        65 -~p~~~~~----~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                       +|.+...    +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+.. .........|.|.+++.+|+|.|+|
T Consensus       118 ~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  197 (334)
T 1ry7_B          118 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC  197 (334)
T ss_dssp             -CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEE
T ss_pred             CCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEE
Confidence             3333321    123568899999999999999999999999998886544321 1122334579999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEECCCcccCCCeeee-cCcCeeEecCCcEEEEEEEEecCCCCCeeEEee----CCEEeccCCCC
Q psy1095         139 KVENNYGSVEATARLEIMDPRAIISRPKVLN-GLENLRCCDGDSVTFECQVQVVPPNDHDISWFR----NNRLIKLDSDM  213 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~----~~~~~~~~~~~  213 (325)
                      .+.|..+.....+.|.|...+.  .+|.+.. .+....+..|+.+.|.|.+.+.|.  +.+.|++    ++..+......
T Consensus       198 ~a~n~~g~~~~~~~l~V~~~~~--~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~--p~v~W~~~~~~~g~~~~~~~~~  273 (334)
T 1ry7_B          198 VVENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ--PHIQWLKHVEVNGSKVGPDGTP  273 (334)
T ss_dssp             EEEETTEEEEEEEEEEEECCCC--SSCBCCTTCSCCEEEESSCCEEECCCCBCSSC--EEEEEEECCCGGGCSBCTTSSB
T ss_pred             EEEeCCCCEEEEEEEEEecCCC--CCCceEecCCCceEEeCCCCEEEEEEEecCCC--CeEEEEECCcCCCccccCCCCe
Confidence            9999998888888888876432  1233332 234567889999999999999887  8999999    66655433221


Q ss_pred             ceEEEecCCc---ceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCee
Q psy1095         214 KPEVQVDSKE---NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD  269 (325)
Q Consensus       214 ~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~  269 (325)
                      .......+..   ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  332 (334)
T 1ry7_B          274 YVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEEL  332 (334)
T ss_dssp             CCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC-
T ss_pred             eEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCCc
Confidence            1110000000   0012479999999999999999999999999999999996655443

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.97  E-value=2.1e-29  Score=216.00  Aligned_cols=229  Identities=20%  Similarity=0.281  Sum_probs=176.6

Q ss_pred             eeeecccCCCCcccCC----CCCCCCCCCCCcccCCCCCCCcccccccccccc----------cc------cCCCCeeEe
Q psy1095          11 LSVKLTRPSGLMSGHS----TPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT----------RR------LTSSPRFYA   70 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~----------~~------~~~~p~~~~   70 (325)
                      ..+.|.+++.......    .......+|.|.+++.+|+|.|+|.+.+..+..          ..      ...+|.+..
T Consensus       132 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~  211 (382)
T 1cs6_A          132 LSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA  211 (382)
T ss_dssp             CEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEE
T ss_pred             cEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceec
Confidence            4667877765532111    112234578999999999999999998765210          01      112455544


Q ss_pred             -cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          71 -VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        71 -~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                       .|....+.+|+.+.|.|.+.+.|.+.+.|++++..+...      .......|.|.+++.+|+|.|+|.+.|..+....
T Consensus       212 ~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  285 (382)
T 1cs6_A          212 KFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY  285 (382)
T ss_dssp             CCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEE
Confidence             355778899999999999999999999999988765431      1123356999999999999999999999998888


Q ss_pred             EEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEE
Q psy1095         150 TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR  229 (325)
Q Consensus       150 ~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (325)
                      .+.|.|..+      |.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+....+...   ..       ..
T Consensus       286 ~~~l~V~~~------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~v~W~~~g~~~~~~~~~~~---~~-------~~  347 (382)
T 1cs6_A          286 QGRIIIHAQ------PDWLDVITDTEADIGSDLRWSCVASGKPR--PAVRWLRDGQPLASQNRIEV---SG-------GE  347 (382)
T ss_dssp             EEEEEEEEE------EEEEECCCCEEEETTCCEEEECEEEEESC--CEEEEEETTEECCCCSSEEE---ET-------TE
T ss_pred             EEEEEEecC------CCcccCCCccEEcCCCeEEEEEEeeeecC--CEEEEEECCEECCCCceEEE---EC-------CE
Confidence            888888765      55555566778899999999999999998  89999999998876543221   22       37


Q ss_pred             EEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       230 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       348 L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          348 LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            9999999999999999999999999998888873

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.97  E-value=3.3e-28  Score=188.56  Aligned_cols=188  Identities=25%  Similarity=0.459  Sum_probs=156.2

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC--cEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+|.+...|....+.+|+++.|.|.+.+.|.+.+.|++++..+....  ++.+...++...|.|.+++..|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            47888888899999999999999999999999999999998886653  5555555667889999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      +..+.......|.|....   .+|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+.........  .++
T Consensus        84 n~~~~~~~~~~l~v~~~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~~~~~~~~~~~~~~--~~~  156 (194)
T 2a38_A           84 NGSGQATSTAELLVKAET---APPNFVQRLQSMTVRQGSQVRLQVRVTGIPT--PVVKFYRDGAEIQSSLDFQIS--QEG  156 (194)
T ss_dssp             ETTEEEEEEEEEEEECCC---EEEEEEECCCCEEECTTEEEEEEEEEEEESC--CEEEEEETTEECCCSSSEEEE--EET
T ss_pred             cCCceEeEEEEEEEccCC---CCCEEEeCCccEEEcCCCEEEEEEEEEEecC--CeEEEEECCEECCCCCcEEEE--EcC
Confidence            998887777888887531   2356666666778899999999999999888  889999999988765543322  333


Q ss_pred             CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                          ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus       157 ----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          157 ----DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             ----TEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ----CEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence                2357999999999999999999999999888888776

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=4.3e-29  Score=209.77  Aligned_cols=241  Identities=14%  Similarity=0.122  Sum_probs=173.8

Q ss_pred             eeeecccCCCCcccCCCCCCCCCCCCCcccCCCCCC-Ccccccccccccc------cccCCCCeeEecCCceEecCCCeE
Q psy1095          11 LSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSR-TFTPYSLNSAIRT------RRLTSSPRFYAVPHNKICDLGDTV   83 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~c~~~~~~~~~------~~~~~~p~~~~~~~~~~v~~g~~v   83 (325)
                      ..++|.+++......... ....+|.|.+++++|+| .|+|.+.+..+..      ..+..+|.+...+....+.+|+.+
T Consensus        68 ~~v~W~k~~~~~~~~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v  146 (329)
T 3oq3_B           68 NVVNWEKIGKTRRPLNRR-VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI  146 (329)
T ss_dssp             CEEEEEECSSSCEECSTT-EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCE
T ss_pred             CeeEEEECCCCccccCce-eecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcE
Confidence            468888888766543222 44678999999999999 9999998866311      233356665554444457789999


Q ss_pred             EEEEEEEecC-CCeeEEeeCCeeCCC-CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC--Cee----EEEEEEEEE
Q psy1095          84 RFQCSVTGQP-APWTSWSKDGKPATP-NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN--YGS----VEATARLEI  155 (325)
Q Consensus        84 ~l~C~~~~~p-~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~----~~~~~~l~v  155 (325)
                      .|.|.+.+.| .+.+.|+|++..+.. ..++...  +  ..|.|.+++.+|+|.|+|.+.|.  .+.    ....+.|.|
T Consensus       147 ~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~--~--~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V  222 (329)
T 3oq3_B          147 DLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS--G--QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTV  222 (329)
T ss_dssp             EEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE--T--TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEE
T ss_pred             EEEeccCCCCCCceEEEEECCccCCCCCceEecC--C--CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEE
Confidence            9999999999 899999999998853 3344333  2  46999999999999999999986  432    233467777


Q ss_pred             ECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecC--CCCC-eeEEeeCCEEec-cCCCCceEEEecCCcceeEEEEE
Q psy1095         156 MDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP--PNDH-DISWFRNNRLIK-LDSDMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       156 ~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~~-~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  231 (325)
                      ...+.. .. .+. .+....+..|+.+.|.|.+.+.|  +. + .+.|++++..+. .+..........+  ......|.
T Consensus       223 ~~~~~~-~~-~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~-~i~v~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~~L~  296 (329)
T 3oq3_B          223 IPSQDH-RF-KLI-LDPKINVTIGEPANITCTAVSTSLLVD-DVLIDWENPSGWIIGLDFGVYSILTSSG--GITEATLY  296 (329)
T ss_dssp             ECCCCC-CE-EEE-CCSEEEECTTSCEEEEEEEEETTCCTT-CCEEEEECTTSCBCCBCSSEEEEEEEET--TEEEEEEE
T ss_pred             ECCCCC-CC-cee-cCCeeEEecCCCEEEEEEEEECCCCCC-CcEEEEEECCeeeeccCCceeeeecccC--ceeEeEEE
Confidence            765321 01 222 44456788999999999999998  32 5 899999988753 2222111111111  12457899


Q ss_pred             eCCCCCCCCe-EEEEEEEeCCCcEEeEEEEEE
Q psy1095         232 IPHVYPEDEG-EFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       232 i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |.+++.+|+| .|+|.|.|..|.....+.|.|
T Consensus       297 I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          297 FENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             ESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            9999999999 999999999999988887765

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.97  E-value=1.1e-28  Score=212.93  Aligned_cols=235  Identities=16%  Similarity=0.237  Sum_probs=176.8

Q ss_pred             eeeecccCCCCcccCC--CCCCCCCCCCCcccCCCC-CCCcccccccccccc--------ccc-------CCCCeeEecC
Q psy1095          11 LSVKLTRPSGLMSGHS--TPRSTPRSTPPRSISPLS-SRTFTPYSLNSAIRT--------RRL-------TSSPRFYAVP   72 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~v~~~d-~G~Y~c~~~~~~~~~--------~~~-------~~~p~~~~~~   72 (325)
                      ..+.|.+++.......  .......+|.|.+++.+| +|.|+|.+.+..+..        ..+       ..+|.+...+
T Consensus       147 ~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~  226 (404)
T 3p3y_A          147 PVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQ  226 (404)
T ss_dssp             CEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSC
T ss_pred             CeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCcccccc
Confidence            3567777654322221  111234578899999999 599999997654421        111       1234443322


Q ss_pred             ---CceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          73 ---HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        73 ---~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                         ....+.+|+++.|.|.+.+.|.+.+.|++++..+..... ....  ....|.|.+++.+|+|.|+|.+.|..+....
T Consensus       227 ~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  303 (404)
T 3p3y_A          227 GTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KFEN--FNKALRITNVSEEDSGEYFCLASNKMGSIRH  303 (404)
T ss_dssp             SSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EEEG--GGTEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcc-cccc--cCceEEEccCCHhHCEEEEEEEEeCCCcEEE
Confidence               235688999999999999999999999999998865543 2222  2346999999999999999999999998888


Q ss_pred             EEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEE
Q psy1095         150 TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR  229 (325)
Q Consensus       150 ~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (325)
                      .+.|.|..+      |.+...+....+.+|+.+.|.|.+.+.|+  +.+.|++++..+.............       ..
T Consensus       304 ~~~l~V~~~------p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~v~W~~~g~~~~~~~~~~~~~~~~-------~~  368 (404)
T 3p3y_A          304 TISVRVKAA------PYWLDEPKNLILAPGEDGRLVCRANGNPK--PTVQWMVNGEPLQSAPPNPNREVAG-------DT  368 (404)
T ss_dssp             EEEEEEEEE------EEEEECCCCEEECTTCCEEEECEEEEESC--CEEEEEETTEEGGGSCCCTTEEEET-------TE
T ss_pred             EEEEEEeCC------CeeeccCCcceeecCCcEEEEEEccccCC--CceEEEECCEecCCCCCCceEEecC-------CE
Confidence            888888765      55666666778889999999999999988  8999999999987654322222223       38


Q ss_pred             EEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       230 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       369 L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          369 IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             EEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            9999999999999999999999999998888773

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=9.4e-30  Score=212.09  Aligned_cols=240  Identities=11%  Similarity=0.124  Sum_probs=174.2

Q ss_pred             eeeecccCCCCcccCCCCCC----CCCCCCCcccCCCCCCCccccccccccccc----ccCC------------CCeeEe
Q psy1095          11 LSVKLTRPSGLMSGHSTPRS----TPRSTPPRSISPLSSRTFTPYSLNSAIRTR----RLTS------------SPRFYA   70 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~----~~~~------------~p~~~~   70 (325)
                      ..++|.+++..+........    ...+|.|.+++.+|+|.|+|.+.+..+...    .+..            +|.+..
T Consensus        32 ~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~~~  111 (312)
T 2y23_A           32 SEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPV  111 (312)
T ss_dssp             CCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBCCE
T ss_pred             cEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCcccc
Confidence            46778877776654332221    225788999999999999999987554322    1111            565555


Q ss_pred             cCC-ceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEec--CCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          71 VPH-NKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREK--EDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        71 ~~~-~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      .+. ...+.+|+++.|.|.+. +.|.+.+.|++++..+....++.+...  .+...|.|.+++.+|+|.|+|.+.+....
T Consensus       112 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  191 (312)
T 2y23_A          112 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT  191 (312)
T ss_dssp             EEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE
T ss_pred             ccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce
Confidence            444 77799999999999998 789999999999999988776666543  45677999999999999999999865443


Q ss_pred             EEEEEEEEEECCC---------------cccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCC
Q psy1095         147 VEATARLEIMDPR---------------AIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDS  211 (325)
Q Consensus       147 ~~~~~~l~v~~~~---------------~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~  211 (325)
                      ..  ..+.+....               ....+|.+.... ...+.+|+.+.|.|.+.+.|++ ..+.|++++..+....
T Consensus       192 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~g~~~~~~~  267 (312)
T 2y23_A          192 NH--STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKE-THIVWYKDEREISVDE  267 (312)
T ss_dssp             EE--EEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSS-CEEEEEETTEEEEEEC
T ss_pred             EE--EEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEEEEEEEEcCCCCC-CEEEEeeCCEECCCCC
Confidence            33  333331100               001234444332 3678899999999999998872 3999999999887544


Q ss_pred             CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         212 DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      .....    +    ....|.|.+++.+|+|.|+|.|.|..|.....+.|.+
T Consensus       268 ~~~~~----~----~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          268 KHDFK----D----GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             CC------------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             cEEEE----C----CEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            43322    1    2468999999999999999999999999998888765

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.97  E-value=1.1e-30  Score=228.04  Aligned_cols=277  Identities=12%  Similarity=0.127  Sum_probs=173.8

Q ss_pred             CCCCCcccCCCCCCCccccccccccc------ccccC---CCCeeEecCCceEecCCCeEEEEEEEEe-cCCC-eeEEee
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIR------TRRLT---SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP-WTSWSK  101 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~---~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~~  101 (325)
                      .+|.|.+++++|+|.|+|.+.+....      ...+.   .+|.+...+......+|+.+.|.|.+.+ .|.+ .++|++
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k  154 (438)
T 1qgc_4           75 FTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI  154 (438)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             EEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEE
Confidence            36899999999999999999876532      11222   3677766544444456889999999987 6777 899999


Q ss_pred             CCeeCCCCCcE--EEEec-CC----eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCe
Q psy1095         102 DGKPATPNARV--TIREK-ED----LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENL  174 (325)
Q Consensus       102 ~~~~~~~~~~~--~~~~~-~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~  174 (325)
                      ++..+......  ..... ++    ...|.|.++..+|+|.|+|.+.|..+....  .+.+...    ..+.....+...
T Consensus       155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~----~~~~~~~~~~~~  228 (438)
T 1qgc_4          155 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI--VKSFNRN----ECEVMLVESGGG  228 (438)
T ss_dssp             TTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE--EEEEETT----C-CCEEEEECCE
T ss_pred             CCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce--ecccccc----cceeEEecCCce
Confidence            99988654111  11111 11    246999999999999999999998775422  2233221    111222334456


Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEecc---------------CCCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIKL---------------DSDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      .+.+|+.+.|.|.+.+.|.+.+.+.|+++  +..+..               ....+.....++  ......|.|.+++.
T Consensus       229 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~  306 (438)
T 1qgc_4          229 LVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDN--AKNTLYLQMSSLRS  306 (438)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEET--TTTEEEEEECSCCG
T ss_pred             EEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeec--CCCeEEEEECCCCh
Confidence            78899999999999998832278999996  433320               000111111110  01246899999999


Q ss_pred             CCCeEEEEEEEeCCC-----cEEeEEEEEEEee---CCe--------ecCCCC--------------ceEE---------
Q psy1095         238 EDEGEFTCRVANELG-----EVVTSACLIVDVV---KGK--------DLTSDG--------------RLNI---------  278 (325)
Q Consensus       238 ~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~---~~~--------~~~~~~--------------~~~~---------  278 (325)
                      +|+|.|+|.|.|..+     .......|.|...   .+.        .+..+.              ...+         
T Consensus       307 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~  386 (438)
T 1qgc_4          307 ADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSS  386 (438)
T ss_dssp             GGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCS
T ss_pred             hhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCC
Confidence            999999999998433     1112233333210   000        000000              0000         


Q ss_pred             -------EEeCCE----EEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEE
Q psy1095         279 -------ITVGGT----SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVA  318 (325)
Q Consensus       279 -------~~~~~~----~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  318 (325)
                             ...++.    +.|.|.++..+| |.|+|.|.|..|.......|.
T Consensus       387 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~  436 (438)
T 1qgc_4          387 GVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  436 (438)
T ss_dssp             SEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred             ceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence                   001122    258898888888 999999999999877766654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.96  E-value=7.3e-29  Score=204.67  Aligned_cols=230  Identities=17%  Similarity=0.175  Sum_probs=161.3

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..+|.|...+....+.+|++++|.|.+.+    .+.|++++..+    .. ....+  ..|.|.+++.+|+|.|+|.+.|
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~~-~~~~~--~~L~i~~~~~~d~G~Y~C~~~n   78 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----EM-VENKK--NEWIQEKAEATRTGTYTCSNSN   78 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS----CE-EEECS--SEEEETTCCGGGCEEEEEEESS
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce----ee-ecCCC--ceEEEeccCHHhCeEEEEEeeC
Confidence            35788887888888999999999999876    89999998876    11 11122  6799999999999999999988


Q ss_pred             CCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEE-eeCCEEeccCCCCceEEEecC
Q psy1095         143 NYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISW-FRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W-~~~~~~~~~~~~~~~~~~~~~  221 (325)
                        +. ...+.|.|..++..      ........+.+|+.+.|.|.+.+ |. .+.+.| ++++..+.....  ......+
T Consensus        79 --g~-~~~~~l~V~~~~~~------~~~~~~~~~~~g~~v~l~C~~~~-p~-~~~v~W~~~~g~~l~~~~~--~~~~~~~  145 (290)
T 2o26_X           79 --GL-TSSIYVFVRDPAKL------FLVGLPLFGKEDSDALVRCPLTD-PQ-VSQYSLIECDGKSLPTDLT--FVPNPKA  145 (290)
T ss_dssp             --SC-EEEEEEEEECSSCC------BCCCCCEEEETTSCEEECCCBSC-CS-CEEEEEEETTSCCCCTTCE--EEEETTT
T ss_pred             --Cc-cEEEEEEEeCCCcc------cccccceEEecCCeEEEeCcCCC-CC-CceEEEEeCCCcCCCCCCc--eeeCCCC
Confidence              43 66777888765332      23445667889999999999985 33 268999 467776654322  2211222


Q ss_pred             CcceeEEEEEeCCCCCCCCe-EEEEEEEeCCCcEEe-EEEEEEEe---eCCee--------cC--------------CCC
Q psy1095         222 KENLVIARLKIPHVYPEDEG-EFTCRVANELGEVVT-SACLIVDV---VKGKD--------LT--------------SDG  274 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~-~~~l~v~~---~~~~~--------~~--------------~~~  274 (325)
                             .|.|.+++.+|+| .|+|.|.|..+.... .+.|.|..   .++..        +.              +..
T Consensus       146 -------~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p  218 (290)
T 2o26_X          146 -------GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS  218 (290)
T ss_dssp             -------EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTT
T ss_pred             -------CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcc
Confidence                   7999999999999 999999998555332 45666541   11110        00              000


Q ss_pred             c-eEEEE----------------------eCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         275 R-LNIIT----------------------VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       275 ~-~~~~~----------------------~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                      . +....                      ......|.|.++..+|+|.|+|.|.|..|..+..+.|.|.++|
T Consensus       219 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          219 VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             CEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             eeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            0 11111                      1123579999999999999999999999999999999999886

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=7e-29  Score=201.58  Aligned_cols=222  Identities=18%  Similarity=0.222  Sum_probs=163.5

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .|.|...|....+.+|+.+.|.|.+.+.|.+ .++|++++..+...          ...|.|.+++.+|+|.|+|.+.+.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~----------~~~l~i~~~~~~d~G~Y~C~~~~~   70 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQRGLS   70 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEESSS
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc----------CCeEEEecCCcccCeEEEEEEecC
Confidence            4788899999899999999999999888877 99999999987643          235999999999999999999876


Q ss_pred             CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCCCCceEEEecCC
Q psy1095         144 YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  222 (325)
                      .+.  ..+.|.|...      + +...+....+.+|+.+.|.|.+ .+.|.  +.+.|++++..+....           
T Consensus        71 ~~s--~~~~l~v~~~------~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~~g~~~~~~~-----------  128 (262)
T 3rjd_A           71 GRS--DPIQLEIHRG------W-LLLQVSSRVFTEGEPLALRCHAWKDKLV--YNVLYYRNGKAFKFFH-----------  128 (262)
T ss_dssp             CCC--CCEEEEEECS------S-EEEEESCSEEETTSCEEEEEEEGGGCCC--EEEEEEETTEEEEEEE-----------
T ss_pred             Ccc--ccEEEEEecc------c-eEecCCCeEEecCCeEEEEEEccCCCCC--ceEEEEECCccccccC-----------
Confidence            543  3455666553      2 2233345668899999999999 45555  8999999998874221           


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCe-ecC-------------------CC----Cc--e
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK-DLT-------------------SD----GR--L  276 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~-~~~-------------------~~----~~--~  276 (325)
                         ....|.|.+++.+|+|.|+|.+.|..+.....+.|.|...... .+.                   ..    ..  +
T Consensus       129 ---~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~  205 (262)
T 3rjd_A          129 ---WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQL  205 (262)
T ss_dssp             ---ECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----E
T ss_pred             ---CCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccE
Confidence               1247999999999999999999999987777777777542111 110                   00    00  0


Q ss_pred             EE-EEe--------CCEEEEEEcCCCCCCCeEEEEEEECCCeeE---EeEEEEEEec
Q psy1095         277 NI-ITV--------GGTSVLTIEDITGDDSGKYQVHVSNQHGSD---SCYASVAVEG  321 (325)
Q Consensus       277 ~~-~~~--------~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~---~~~~~l~V~~  321 (325)
                      .. +..        .....|.|.++..+|+|.|+|.|.|..|..   +..+.|.|++
T Consensus       206 ~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~G  262 (262)
T 3rjd_A          206 YFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG  262 (262)
T ss_dssp             EEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEEC
T ss_pred             EEEEEeCCcEecccCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEeC
Confidence            01 111        223479999999999999999999999964   2335665543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.96  E-value=1.5e-28  Score=205.19  Aligned_cols=246  Identities=17%  Similarity=0.174  Sum_probs=171.8

Q ss_pred             eeeecccCCCCcc----cCCCCCCCCCCCCCcccCCCCCCCcccccccccccccc------cCCCCeeEecCC---ceEe
Q psy1095          11 LSVKLTRPSGLMS----GHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRR------LTSSPRFYAVPH---NKIC   77 (325)
Q Consensus        11 ~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~------~~~~p~~~~~~~---~~~v   77 (325)
                      ..++|.+++....    ..........+|.|.+++.+|+|.|+|.+.+..+....      +..+|.+...+.   ...+
T Consensus        36 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~  115 (315)
T 1itb_B           36 GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKL  115 (315)
T ss_dssp             SCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEE
T ss_pred             ceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEE
Confidence            3677877765321    12222233458899999999999999999877543211      113444332222   2458


Q ss_pred             cCCCeEEEEEEE------EecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE-eCCeeE---
Q psy1095          78 DLGDTVRFQCSV------TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE-NNYGSV---  147 (325)
Q Consensus        78 ~~g~~v~l~C~~------~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~---  147 (325)
                      .+|+++.|.|.+      .+.|.+.+.|++++..+...........   ..|.|.+++.+|+|.|+|.+. +..+..   
T Consensus       116 ~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~  192 (315)
T 1itb_B          116 PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYLGKQYPI  192 (315)
T ss_dssp             ETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEET---TEEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             ecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecC---ceEEEEeceehhCcEEEEEEEcCCCCcEEEE
Confidence            899999999998      7889999999999999865432222222   269999999999999999999 666654   


Q ss_pred             EEEEEEEEECCCcccCCCeeeecCcC-eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceE--EEecC---
Q psy1095         148 EATARLEIMDPRAIISRPKVLNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE--VQVDS---  221 (325)
Q Consensus       148 ~~~~~l~v~~~~~~~~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~---  221 (325)
                      ...+.+.+.... ...+|.+...+.. ..+.+|+.+.|.|.+.+.|.  +.+.|++++..+.........  .....   
T Consensus       193 ~~~~~~~~~~~~-~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~--p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~  269 (315)
T 1itb_B          193 TRVIEFITLEEN-KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLS--DIAYWKWNGSVIDEDDPVLGEDYYSVENPAN  269 (315)
T ss_dssp             EEEEEEEEECCC-CCCCCEECSCCSEEEECCSSSCEEEEEEEEECTT--SEEEEEETTEECCTTCSSEEEEEEEECCSSC
T ss_pred             EEEEEEEEecCC-CCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCC--CeeEEEECCEECCcccccccccceeeeccCC
Confidence            334444444221 1235666554433 46789999999999999888  899999999988765432211  11111   


Q ss_pred             -CcceeEEEEEeCCCCCCC-CeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         222 -KENLVIARLKIPHVYPED-EGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       222 -~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                       ......+.|.|.+++.+| +|.|+|.|.|..|.....+.|.|
T Consensus       270 ~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          270 KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             GGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred             CceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEe
Confidence             011245689999999999 99999999999999998888876

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.96  E-value=6.3e-29  Score=207.33  Aligned_cols=245  Identities=17%  Similarity=0.180  Sum_probs=164.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCC-----eeEEeeCCeeC-------------CCCCcEEEEec-----CCeEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAP-----WTSWSKDGKPA-------------TPNARVTIREK-----EDLRFLE  124 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~-----~v~W~~~~~~~-------------~~~~~~~~~~~-----~~~~~l~  124 (325)
                      ++..|..+.+..|++++|.|.+.+.+.+     .++|+|++...             ....++.....     ....+|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            4567778889999999999999886655     48999987532             12223332211     1235699


Q ss_pred             EccCCCCCCeEEEEEEEe-CCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEE-ecCCCCCeeEEee
Q psy1095         125 ISEVTLEDAGLYTIKVEN-NYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-VVPPNDHDISWFR  202 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~  202 (325)
                      |.+++.+|+|.|+|.+.+ ..+.....+.|.+...      |.+........+..|+.+.+.|.+. +.|.  +.+.|++
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~------P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~--~~i~W~~  154 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK------PQNTAEVQKVQLTGEPVPMARCVSTGGRPP--AQITWHS  154 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBC------CEEEEEECCBCCCSSCEEEEEEEEEEEBSC--CEEEEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccC------CcceecccceEeecCceEEEEEEccCccCC--cEEEeec
Confidence            999999999999999864 4455566666666544      4555444555667788899999876 5566  8999999


Q ss_pred             CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe--EEEEEEEeeCCe--------ecCC
Q psy1095         203 NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT--SACLIVDVVKGK--------DLTS  272 (325)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~v~~~~~~--------~~~~  272 (325)
                      ++..+......   ....+......+.|.|.....+|+|.|+|.|.|..+....  .+.|.|...+..        .+..
T Consensus       155 ~~~~~~~~~~~---~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~  231 (313)
T 4fqp_A          155 DLGGMPNTSQV---PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG  231 (313)
T ss_dssp             TTCCEEEEEEE---ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETT
T ss_pred             CCcccccccee---eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecC
Confidence            98766432111   0011122234467999999999999999999997654433  333333221110        0000


Q ss_pred             CCce-------------E-EEEeCC----------EEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         273 DGRL-------------N-IITVGG----------TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       273 ~~~~-------------~-~~~~~~----------~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                      +...             . .+..++          ...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+++|
T Consensus       232 g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  306 (313)
T 4fqp_A          232 QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP  306 (313)
T ss_dssp             CCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             CCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence            1100             1 111111          1369999999999999999999999999999999998765

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=7.5e-29  Score=204.41  Aligned_cols=240  Identities=14%  Similarity=0.166  Sum_probs=174.8

Q ss_pred             eecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCccccccccccc-----ccccCCCCe-eEecCCceEecCCCeEEEE
Q psy1095          13 VKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIR-----TRRLTSSPR-FYAVPHNKICDLGDTVRFQ   86 (325)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~-----~~~~~~~p~-~~~~~~~~~v~~g~~v~l~   86 (325)
                      +.|..++..... ........+|.|.+++.+|+|.|+|.+.+....     .+.+..+|. +...+....+.+|+++.|.
T Consensus        32 v~W~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~  110 (289)
T 3ejj_X           32 VEWDGPISPYWT-LDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLP  110 (289)
T ss_dssp             CEEECSCSSSSE-ECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEEC
T ss_pred             EEEccCCCceEE-EeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeE
Confidence            566655433221 122334568899999999999999998765442     233444554 5666777889999999999


Q ss_pred             EEEEecCCCe-eEEee-CCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE-eCCeeEEEEEEEEEECCCcccC
Q psy1095          87 CSVTGQPAPW-TSWSK-DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE-NNYGSVEATARLEIMDPRAIIS  163 (325)
Q Consensus        87 C~~~~~p~~~-v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v~~~~~~~~  163 (325)
                      |.+.+.+.+. +.|++ ++..+....++.....   ..|.|.+++.+|+|.|+|.+. +..+.....+.|.|....  ..
T Consensus       111 C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~--~~  185 (289)
T 3ejj_X          111 CLITDPALKDSVSLMREGGRQVLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVH--PE  185 (289)
T ss_dssp             EEESCGGGGGSEEEEEGGGEECCTTCCEEEETT---TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSC--CC
T ss_pred             EEccCCCcceEEEEEecCCeecCCCccEEECCC---CCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECC--CC
Confidence            9998876654 99986 6777766666665433   259999999999999999998 444555567778887432  13


Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      +|.+...+....+.+|+.+.|.|.+.+ .|.  +.+.|++++..+.......    ...........|.|.+++.+|+|.
T Consensus       186 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~i~W~~~~~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~d~G~  259 (289)
T 3ejj_X          186 PPQIKLEPSKLVRIRGEAAQIVCSATNAEVG--FNVILKRGDTKLEIPLNSD----FQDNYYKKVRALSLNAVDFQDAGI  259 (289)
T ss_dssp             CCEEEEESSSEECCSSSCEEEEEEEEESSSC--CEEEEEETTEECCCCEEEE----ECSSSEEEEEEEEESSCCSSSCEE
T ss_pred             CCeEEecCCceEEEeCCcEEEEEEeCCCCCc--eEEEEEECCEEeeccCCcc----cccceEEeeEEEEEEeecccCCEE
Confidence            577777777777789999999999998 566  8999999998875432111    111122245789999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEe
Q psy1095         243 FTCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      |+|.|.|..|....++.|.+..
T Consensus       260 Y~C~a~N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          260 YSCVASNDVGTRTATMNFQVVE  281 (289)
T ss_dssp             EEEEEECSSCEEEEEEEEECC-
T ss_pred             EEEEEEcCCCCccccEEEEEEe
Confidence            9999999999999998887743

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=209.63  Aligned_cols=214  Identities=21%  Similarity=0.320  Sum_probs=160.7

Q ss_pred             CCCCCcccCCCCCCCcccccccccccc------cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIRT------RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA  106 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~  106 (325)
                      .+|.|.+++.+|+|.|+|.+.+..+..      ..+..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus        60 ~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~  139 (291)
T 2wim_A           60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV  139 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----
T ss_pred             EEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccc
Confidence            368899999999999999998765432      23446777777777888999999999999999999999999998877


Q ss_pred             CC--CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee--EEEEEEEEEECCCcccCCCeeeecCc--CeeEecCC
Q psy1095         107 TP--NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS--VEATARLEIMDPRAIISRPKVLNGLE--NLRCCDGD  180 (325)
Q Consensus       107 ~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~p~~~~~~~--~~~v~~g~  180 (325)
                      ..  ..++.....   ..|.|.+++..|+|.|+|.+.+..+.  ....+.+.+..++.      +.....  ...+.+|+
T Consensus       140 ~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~------~~~~~~~~~~~~~~g~  210 (291)
T 2wim_A          140 TTISDNRFAMLAN---NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA------ISMPQKSFNATAERGE  210 (291)
T ss_dssp             CBCCCSSEEECTT---SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCC------CBCSCSEEECCSSSCC
T ss_pred             cccCCceEEEccC---CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCc------cccCcccccceecCCC
Confidence            54  334443322   35999999999999999999987643  33455666665533      222221  23467899


Q ss_pred             cEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095         181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL  260 (325)
Q Consensus       181 ~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  260 (325)
                      .+.|.|.+.+.|.  +.+.|++++..+........  ...+      ..|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus       211 ~~~l~C~~~g~p~--p~v~W~~~g~~~~~~~~~~~--~~~~------~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  280 (291)
T 2wim_A          211 EMTFSCRASGSPE--PAISWFRNGKLIEENEKYIL--KGSN------TELTVRNIINSDGGPYVCRATNKAGEDEKQAFL  280 (291)
T ss_dssp             EEEEECBCCCBSC--CEEEEEETTEECCCTTTEEE--CSTT------CEEEEESCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEEEEEeecCCC--CeEEEEECCEECcCCccEEE--cCCc------cEEEEeeCCcccCEEEEEEEEECCCceeeeEEE
Confidence            9999999999887  89999999998876543321  1222      479999999999999999999999999999999


Q ss_pred             EEEee
Q psy1095         261 IVDVV  265 (325)
Q Consensus       261 ~v~~~  265 (325)
                      .|...
T Consensus       281 ~v~~~  285 (291)
T 2wim_A          281 QVFVQ  285 (291)
T ss_dssp             EC---
T ss_pred             EEEEe
Confidence            88443

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.96  E-value=2.1e-29  Score=207.91  Aligned_cols=239  Identities=15%  Similarity=0.118  Sum_probs=174.3

Q ss_pred             eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCccccccccccc--ccccCCCCeeEecCCceEecCCCeEEEEEEE
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIR--TRRLTSSPRFYAVPHNKICDLGDTVRFQCSV   89 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~--~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~   89 (325)
                      .++|.+++..+...   .....+|.|.+++.+|+|.|+|.+.++...  .+.+..+|.+...+....+.+|+.+.|.|.+
T Consensus        39 ~i~W~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~ng~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~  115 (290)
T 2o26_X           39 FVRWTFKTYFNEMV---ENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPL  115 (290)
T ss_dssp             EEEEEEECSSSCEE---EECSSEEEETTCCGGGCEEEEEEESSSCEEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCB
T ss_pred             cEEEecCCcceeee---cCCCceEEEeccCHHhCeEEEEEeeCCccEEEEEEEeCCCcccccccceEEecCCeEEEeCcC
Confidence            56788888766111   112278999999999999999999883211  2333356655566677788899999999999


Q ss_pred             EecCC-CeeEEe-eCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCe-EEEEEEEeCCeeEE-EEEEEEEECCCcccCCC
Q psy1095          90 TGQPA-PWTSWS-KDGKPATPNARVTIREKEDLRFLEISEVTLEDAG-LYTIKVENNYGSVE-ATARLEIMDPRAIISRP  165 (325)
Q Consensus        90 ~~~p~-~~v~W~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~p  165 (325)
                      .+ |. +.++|+ +++..+....++.....   ..|.|.+++.+|+| .|+|.+.|..+... ..+.|.|....  ..+|
T Consensus       116 ~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~---~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~--~~~P  189 (290)
T 2o26_X          116 TD-PQVSQYSLIECDGKSLPTDLTFVPNPK---AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI--KAIP  189 (290)
T ss_dssp             SC-CSCEEEEEEETTSCCCCTTCEEEEETT---TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCC--CSCC
T ss_pred             CC-CCCceEEEEeCCCcCCCCCCceeeCCC---CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCC--CCCC
Confidence            85 77 899995 68888876655554433   25999999999999 99999999866533 34677776321  2357


Q ss_pred             eeeecCcCeeEecCCcEEEEEEEEecCCCCCe-eEEeeCCEEe----ccCCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHD-ISWFRNNRLI----KLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       166 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~-~~W~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      .+...+....+.+|+.+.|.|.+.+.|.  +. +.|++++..+    ........   .........+.|.|.+++.+|+
T Consensus       190 ~i~~~~~~~~v~~G~~v~l~C~~~g~p~--p~~i~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~I~~v~~~d~  264 (290)
T 2o26_X          190 VVSVPETSHLLKKGDTFTVVCTIKDVST--SVNSMWLKMNPQPQHIAQVKHNSWH---RGDFNYERQETLTISSARVDDS  264 (290)
T ss_dssp             EEECSCSBCCCCTTCCEEEEEEEEESST--TCEEEEEEESSSEEECCCEECCEEE---EETTEEEEEEEEEESSCCSSSC
T ss_pred             ccccCCCcceEecCCcEEEEEEEecCCc--ceeEEEecCCCCCccceeecccccc---cCceeeEEEEEEEEcCCCcccC
Confidence            7766666678889999999999999887  65 9999998763    22221111   1111122457899999999999


Q ss_pred             eEEEEEEEeCCCcEEeEEEEEEEe
Q psy1095         241 GEFTCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      |.|+|.|.|..|.....+.|.|..
T Consensus       265 G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          265 GVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             EEEEEEEECSSCEEEEEEEECC--
T ss_pred             eEEEEEEeCCCCcEEEEEEEEEEe
Confidence            999999999999998888887743

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.96  E-value=6.5e-29  Score=207.23  Aligned_cols=218  Identities=17%  Similarity=0.129  Sum_probs=158.2

Q ss_pred             CCCCCCcccCCCCCCCcccccccccc------cccccCCCCeeEecCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCe
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAI------RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGK  104 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~------~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~  104 (325)
                      ..+|.|.+++.+|+|.|+|.+.....      ..+.+..+|.+...+....+..|+.+.+.|.+. +.|.+.+.|++++.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~  157 (313)
T 4fqp_A           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG  157 (313)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred             ceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence            35789999999999999998743221      123445678777777777788899999999875 68999999999987


Q ss_pred             eCCCCCcEEEEecCC---eEEEEEccCCCCCCeEEEEEEEeCCeeE--EEEEEEEEECCCcccCCCeeeecC-cCeeEec
Q psy1095         105 PATPNARVTIREKED---LRFLEISEVTLEDAGLYTIKVENNYGSV--EATARLEIMDPRAIISRPKVLNGL-ENLRCCD  178 (325)
Q Consensus       105 ~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~-~~~~v~~  178 (325)
                      .+...........+.   ...|.|.....+|.|.|+|.+.|..+..  ...+.|.|..+      |.+.... ....+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~------P~v~~~~~~~~~~~~  231 (313)
T 4fqp_A          158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP------PEVSISGYDNNWYLG  231 (313)
T ss_dssp             CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEE------EEEEEECCCSCEETT
T ss_pred             cccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccC------CccccccccceeecC
Confidence            664332222111111   2358899999999999999999876543  34445555433      4443333 3345667


Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      |+.+.|.|.+.|+|.+ ..+.|++++..+....     . ..+      ..|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus       232 g~~v~l~C~~~g~P~p-~~v~W~~~~~~l~~~~-----~-~~~------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  298 (313)
T 4fqp_A          232 QNEATLTCDARSNPEP-TGYNWSTTMGPLPPFA-----V-AQG------AQLLIRPVDKPINTTLICNVTNALGARQAEL  298 (313)
T ss_dssp             CCCEEEEEEEEEESCC-CEEEEEETTBSCCTTE-----E-EET------TEEEECCCSSCCEEEEEEEEECSSCEEEEEE
T ss_pred             CCeEEEEEEecCCCCC-cEEEEEECCEECCCce-----E-EeC------CEEEECcCChhhCEEEEEEEEeCCCcEEEEE
Confidence            8999999999999872 3799999998775321     1 112      3799999999999999999999999999999


Q ss_pred             EEEEEeeCCe
Q psy1095         259 CLIVDVVKGK  268 (325)
Q Consensus       259 ~l~v~~~~~~  268 (325)
                      .|.|...++.
T Consensus       299 ~l~V~~~PP~  308 (313)
T 4fqp_A          299 TVQVKEGPPH  308 (313)
T ss_dssp             EEEEECCC--
T ss_pred             EEEEEeCCCC
Confidence            9988766553

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.96  E-value=2.5e-27  Score=184.05  Aligned_cols=191  Identities=28%  Similarity=0.425  Sum_probs=154.2

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+... .++.+.. .++...|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            5789999999999999999999999999999999999999988654 3554443 4555689999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      +..+.....+.|.|...+... .|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+.....+...  ..+
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~-~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~--~~~  157 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKIH-LPKTLEGMGAVHALRGEVVSIKIPFSGKPD--PVITWQKGQDLIDNNGHYQVI--VTR  157 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEEC-CSSCBTTBEEEEEETTCCCEEEEEEEEESC--CEEEEEESSCEECSSSSCEEE--ECS
T ss_pred             ECCCceeEEEEEEEcCCCcCC-CCccccccCeEEEeCCCEEEEEEEEEecCC--CcEEEEECCEEeecCCCEEEE--EcC
Confidence            998888888888887654432 222233334456788999999999999988  899999999988755544332  222


Q ss_pred             CcceeEEEEEeCC-CCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         222 KENLVIARLKIPH-VYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       222 ~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                          ....|.|.+ +..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       158 ----~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          158 ----SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             ----SEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ----CceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence                346899999 99999999999999999998888888773

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.96  E-value=6.7e-27  Score=183.90  Aligned_cols=192  Identities=26%  Similarity=0.455  Sum_probs=155.8

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCC-CCCcEEEEe-cCCeEEEEEccCCC-CCCeEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-PNARVTIRE-KEDLRFLEISEVTL-EDAGLYTIKV  140 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~-~d~G~Y~C~~  140 (325)
                      .||.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+. ...++.+.. .++...|.|.+++. .|+|.|+|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            68999999999999999999999999999999999999999986 445665543 34557899999999 9999999999


Q ss_pred             EeCCee-EEEEEEEEEECCCcc-cCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEE
Q psy1095         141 ENNYGS-VEATARLEIMDPRAI-ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ  218 (325)
Q Consensus       141 ~~~~~~-~~~~~~l~v~~~~~~-~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  218 (325)
                      .|..+. ....+.|.|...+.. ...|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+........  .
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~--~  160 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT--PNIYWIKNQTKVDMSNPRYS--L  160 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSC--CEEEEEETTEECCTTSTTEE--E
T ss_pred             EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCC--CeEEEEECCeEcccCCCeEE--c
Confidence            998887 677888888765332 12366776666778889999999999999888  88999999998875433221  1


Q ss_pred             ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE-EEEEEEeeC
Q psy1095         219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS-ACLIVDVVK  266 (325)
Q Consensus       219 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~v~~~~  266 (325)
                      ..+       .|.|.+++.+|+|.|+|.|.|..|..... +.|.|....
T Consensus       161 ~~~-------~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          161 KDG-------FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             ETT-------EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cCC-------eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            233       89999999999999999999999988765 788885443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.96  E-value=8.8e-30  Score=237.45  Aligned_cols=208  Identities=15%  Similarity=0.164  Sum_probs=89.3

Q ss_pred             CCCCCCcccCCCCCCCccccccccccccc------cc--CCCCeeEecCCc-eEecCCCeEEEEEEEEe--cCCCeeEEe
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRTR------RL--TSSPRFYAVPHN-KICDLGDTVRFQCSVTG--QPAPWTSWS  100 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~------~~--~~~p~~~~~~~~-~~v~~g~~v~l~C~~~~--~p~~~v~W~  100 (325)
                      ...|.|.+++.+|+|.|+|.+.+......      .+  ..+|.+...|.. ..+.+|++++|.|.+.+  .+.+.+.|+
T Consensus       182 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~  261 (772)
T 3v2a_R          182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE  261 (772)
T ss_dssp             TTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEE
T ss_pred             CCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEe
Confidence            45678999999999999999975433211      11  133445555544 68999999999999987  456789999


Q ss_pred             eCCeeCCCCCcEEEE--------ecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCc
Q psy1095         101 KDGKPATPNARVTIR--------EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLE  172 (325)
Q Consensus       101 ~~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~  172 (325)
                      +++..+.........        .......|.|.+++.+|+|.|+|.+.+..+.....+.|.|...|.+...+   ....
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~---~~~~  338 (772)
T 3v2a_R          262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS---GMES  338 (772)
T ss_dssp             CC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC------------
T ss_pred             cCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEecc---CCCC
Confidence            998876543222111        01124579999999999999999999988877888888888764321111   1123


Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+.+|+.+.|.|.+.+.|.  +.+.|++++..+.......           ....|.|.+++.+|+|.|+|.|.|..+
T Consensus       339 ~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~g~~l~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~a~n~~g  405 (772)
T 3v2a_R          339 LVEATVGERVRIPAKYLGYPP--PEIKWYKNGIPLESNHTIK-----------AGHVLTIMEVSERDTGNYTVILTNPIS  405 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEcCCCcEEEEEEEeeeCC--CeEEEEECCEeCCCCceEc-----------cceeEEEecCChhcCceEEEEEEECCc
Confidence            456788999999999999887  7899999998776432211           125899999999999999999999887


Q ss_pred             cEE
Q psy1095         253 EVV  255 (325)
Q Consensus       253 ~~~  255 (325)
                      ...
T Consensus       406 ~~~  408 (772)
T 3v2a_R          406 KEK  408 (772)
T ss_dssp             ---
T ss_pred             CeE
Confidence            654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.96  E-value=2.1e-28  Score=210.18  Aligned_cols=224  Identities=22%  Similarity=0.255  Sum_probs=168.7

Q ss_pred             eeeecccCCCCcccCC------CCCCCCCCCCCcccCCCCC-CCcccccccccccc---------cccCCC-----CeeE
Q psy1095          11 LSVKLTRPSGLMSGHS------TPRSTPRSTPPRSISPLSS-RTFTPYSLNSAIRT---------RRLTSS-----PRFY   69 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~------~~~~~~~~l~i~~v~~~d~-G~Y~c~~~~~~~~~---------~~~~~~-----p~~~   69 (325)
                      ..+.|.+++.......      .......+|.|.+++.+|+ |.|+|.+.+.....         ..+..+     |.+.
T Consensus       136 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~  215 (388)
T 2v5m_A          136 EVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP  215 (388)
T ss_dssp             EEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECC
T ss_pred             ceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCc
Confidence            5678888876653221      1112245789999999999 99999997753211         111122     1111


Q ss_pred             -ecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC------CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          70 -AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA------TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        70 -~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                       ....+..+.+|+.+.|.|.+.+.|.+.+.|++++..+      ....++...    ...|.|.+++.+|+|.|+|.+.|
T Consensus       216 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n  291 (388)
T 2v5m_A          216 ALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV----SGTLIIKDAVVEDSGKYLCVVNN  291 (388)
T ss_dssp             SSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEE----TTEEEESSCCGGGCEEEEEEEEC
T ss_pred             cccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecc----cCEEEECcCCHHHCeEEEEEEec
Confidence             1223456889999999999999999999999975432      222233221    13699999999999999999999


Q ss_pred             CCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCC
Q psy1095         143 NYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  222 (325)
                      ..|.....+.|.|..+      |.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+..+.           
T Consensus       292 ~~g~~~~~~~l~V~~~------p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~g~~i~~~~-----------  352 (388)
T 2v5m_A          292 SVGGESVETVLTVTAP------LSAKIDPPTQTVDFGRPAVFTCQYTGNPI--KTVSWMKDGKAIGHSE-----------  352 (388)
T ss_dssp             SSCEEEEEEEEEEEEE------EEEEEESSEEEECTTSCEEEEEEEEEECC--CEEEEEETTEECSCCS-----------
T ss_pred             CCCceeEEEEEEEeCC------CccccCCCcEEecCCCCEEEEEEeccccC--CeEEEEECCEECccCC-----------
Confidence            9998888888888764      44455555677889999999999999998  8999999999875432           


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                           ..|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus       353 -----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          353 -----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             -----SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             -----CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence                 37999999999999999999999999998888876

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.96  E-value=3.2e-29  Score=211.45  Aligned_cols=247  Identities=15%  Similarity=0.171  Sum_probs=174.4

Q ss_pred             cCCCCeeEecCCceEecCCCeEEEEEEEE-------ecCCCeeEEeeCCeeC--CCCCcEEEEecCCeEEEEEccCCCCC
Q psy1095          62 LTSSPRFYAVPHNKICDLGDTVRFQCSVT-------GQPAPWTSWSKDGKPA--TPNARVTIREKEDLRFLEISEVTLED  132 (325)
Q Consensus        62 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-------~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d  132 (325)
                      ....|.+...|....+.+|+++.|.|.+.       +.|.+.+.|++++..+  .......+...+  ..|.|.+++.+|
T Consensus        15 ~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D   92 (339)
T 3o4o_C           15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQD--GALWLLPALQED   92 (339)
T ss_dssp             ---CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEET--TEEEESSBCTTC
T ss_pred             chhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeC--CeEEECCCCccc
Confidence            33578888999999999999999999997       8888999999999874  332122222222  269999999999


Q ss_pred             CeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEE-----EEecCCCCCeeEEeeCCEEe
Q psy1095         133 AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQ-----VQVVPPNDHDISWFRNNRLI  207 (325)
Q Consensus       133 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~-----~~~~~~~~~~~~W~~~~~~~  207 (325)
                      +|.|+|.+.+..+.....+.|.|...+...    .........+.+|+.+.|.|.     +.+.|.  +.+.|++++..+
T Consensus        93 ~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~----~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~--~~v~W~k~g~~~  166 (339)
T 3o4o_C           93 SGTYVCTTRNASYCDKMSIELRVFENTDAF----LPFISYPQILTLSTSGVLVCPDLSEFTRDKTD--VKIQWYKDSLLL  166 (339)
T ss_dssp             CEEEECCEEETTEEEEEEEEEEEECSCGGG----HHHHCEEEEEETTSCEEEECCSCTTTCCSSSC--CCBCCEESSCBC
T ss_pred             CEEEEEEEECCcceEEEEEEEEEEcCCCcc----ccccccceEEECCCCEEEEecCCcccccCCCC--ceEEEecCCeeC
Confidence            999999999998888888888888764321    011112346789999999999     677777  899999999887


Q ss_pred             ccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC----cEEeEEEEEEEeeC----CeecC--------
Q psy1095         208 KLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG----EVVTSACLIVDVVK----GKDLT--------  271 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~----~~~~~--------  271 (325)
                      .........  ..+     ...|.|.+++.+|+|.|+|.|.|..+    .....+.|.|....    +..+.        
T Consensus       167 ~~~~~~~~~--~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~  239 (339)
T 3o4o_C          167 DKDNEKFLS--VRG-----TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISAS  239 (339)
T ss_dssp             CTTCSSEEE--CTT-----SSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCC
T ss_pred             CCCCceeEE--cCC-----cceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEec
Confidence            654322111  111     13799999999999999999999877    34556667664321    01000        


Q ss_pred             ----------C---CC---ceEE-EEeCC----------------------------EEEEEEcCCCCCCC-eEEEEEEE
Q psy1095         272 ----------S---DG---RLNI-ITVGG----------------------------TSVLTIEDITGDDS-GKYQVHVS  305 (325)
Q Consensus       272 ----------~---~~---~~~~-~~~~~----------------------------~~~l~i~~v~~~d~-G~Y~C~a~  305 (325)
                                .   .+   ...+ +..++                            ...|.|.++..+|+ |.|+|.|.
T Consensus       240 ~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~  319 (339)
T 3o4o_C          240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVH  319 (339)
T ss_dssp             CCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEE
T ss_pred             cCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEE
Confidence                      0   11   1111 11111                            11699999999997 99999999


Q ss_pred             CCCeeEEeEEEEEEeccc
Q psy1095         306 NQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       306 n~~g~~~~~~~l~V~~~p  323 (325)
                      |..|..++.++|.+..+.
T Consensus       320 N~~G~~~~~~~~~~~~~~  337 (339)
T 3o4o_C          320 NTLSFQTLRTTVKEHHHH  337 (339)
T ss_dssp             ETTEEECCBCCCCC----
T ss_pred             eccCceEEEEEhhHhccc
Confidence            999999999988876553

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.96  E-value=3.4e-27  Score=183.26  Aligned_cols=191  Identities=18%  Similarity=0.319  Sum_probs=156.5

Q ss_pred             cCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        62 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      +..+|.+...|....+.+|+++.|.|.+.+.|.+.+.|++++..+....++.+...+...+|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (197)
T 3lcy_A            4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT   83 (197)
T ss_dssp             CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEE
T ss_pred             cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEE
Confidence            34678899999999999999999999999999999999999999988888888877777889999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      +..+.......|.|...+......   .......+..|+.+.|.|.+.+.|.  +.+.|++++..+.........  ..+
T Consensus        84 n~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~~~~~~~~~~~~~~--~~~  156 (197)
T 3lcy_A           84 NEVGEVETSSKLLLQATPQFHPGY---PLKEKYYGAVGSTLRLHVMYIGRPV--PAMTWFHGQKLLQNSENITIE--NTE  156 (197)
T ss_dssp             CSSCEEEEEEEEEEEEEEEECTTS---CCCSEEEEETTSCEEEEEEEEEESC--CEEEEEETTEECCCCSSEEEE--ECS
T ss_pred             CCCCceeEEEEEEEEcCCCCCCCc---cCCcceeecCCCeEEEEEEEeeeeC--CeeEEeECCEECCCCCceEEE--EcC
Confidence            988887777888887653321110   1123346788999999999999988  899999999988765543332  222


Q ss_pred             CcceeEEEEEeCCCCC-CCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         222 KENLVIARLKIPHVYP-EDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                          ....|.|.++.. +|+|.|+|.|.|..|.....+.|.|.
T Consensus       157 ----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          157 ----HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             ----SEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ----CEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence                236899999995 89999999999999999888888774

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=4.4e-28  Score=208.64  Aligned_cols=210  Identities=22%  Similarity=0.372  Sum_probs=164.3

Q ss_pred             CCCCCCcccCCCCCC---Ccccccccccccccc---------c---------CCCCeeEecCCceEecCCCeEEEEEEEE
Q psy1095          32 PRSTPPRSISPLSSR---TFTPYSLNSAIRTRR---------L---------TSSPRFYAVPHNKICDLGDTVRFQCSVT   90 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G---~Y~c~~~~~~~~~~~---------~---------~~~p~~~~~~~~~~v~~g~~v~l~C~~~   90 (325)
                      ..+|.|.+++.+|+|   .|+|.+.+..+....         +         ..+|.+  .+....+.+|+.+.|.|.+.
T Consensus       160 ~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~  237 (395)
T 1bih_A          160 DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYG  237 (395)
T ss_dssp             TSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEE
T ss_pred             CCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEec
Confidence            457889999999999   999999876554210         0         012333  35667789999999999999


Q ss_pred             ecCCCeeEEeeCCeeCCCCCcEEEE--ecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE-EEEEEEECCCcccCCCee
Q psy1095          91 GQPAPWTSWSKDGKPATPNARVTIR--EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKV  167 (325)
Q Consensus        91 ~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~p~~  167 (325)
                      +.|.+.+.|++++..+.......+.  .......|.|.+++.+|+|.|+|.+.|..+.... .+.|.|..+      |.+
T Consensus       238 g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~------P~~  311 (395)
T 1bih_A          238 SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA------PKY  311 (395)
T ss_dssp             CSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEE------EEE
T ss_pred             cCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcC------Ccc
Confidence            9999999999999988654322222  1222347999999999999999999998886544 778888765      555


Q ss_pred             eecCcC-eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095         168 LNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR  246 (325)
Q Consensus       168 ~~~~~~-~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  246 (325)
                      ...+.. ..+.+|+.+.|.|.+.|.|.  +.+.|++++..+..+ +  .. ...       ..|.|.+++.+|+|.|+|.
T Consensus       312 ~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~v~W~~~g~~~~~~-~--~~-~~~-------~~L~i~~~~~~d~G~Y~C~  378 (395)
T 1bih_A          312 EQKPEKVIVVKQGQDVTIPCKVTGLPA--PNVVWSHNAKPLSGG-R--AT-VTD-------SGLVIKGVKNGDKGYYGCR  378 (395)
T ss_dssp             EECCCSEEEECTTSCEEEECEEEEESC--CCCEEEETTEECCSS-S--EE-EET-------TEEEESSCCSTTCEEEEEE
T ss_pred             ccCCCcceEecCCCeEEEEEEECcccC--CeeEEEECCEECCCC-c--eE-EEC-------CEEEEeeCCcccCEEEEEE
Confidence            555555 67889999999999999988  789999999987643 2  11 122       2899999999999999999


Q ss_pred             EEeCCCcEEeEEEEEE
Q psy1095         247 VANELGEVVTSACLIV  262 (325)
Q Consensus       247 ~~~~~~~~~~~~~l~v  262 (325)
                      |.|..|.....+.|.|
T Consensus       379 a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          379 ATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEccCCCceEEEEEEE
Confidence            9999999988888876

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=1.6e-27  Score=196.45  Aligned_cols=236  Identities=17%  Similarity=0.227  Sum_probs=161.8

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.+...+....+.+|++++|.|.+.+    .+.|++++...     ...........|.|.+++.+|+|.|+|.+.+.
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   73 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTGTYRCTELED   73 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCEEEEEECCC-
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCce-----EEEeccCCccEEEEeeeccccCEEEEEEEecc
Confidence            4677777788888999999999999876    49999776432     12222334467999999999999999999887


Q ss_pred             CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee-CCEEeccCCCCceEEEecCC
Q psy1095         144 YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~  222 (325)
                      .+.....+.|.|...+.    + +...+....+.+|+.+.|.|.+.+.+.+ ..+.|++ ++..+........  ...+ 
T Consensus        74 ~~~~~~~~~l~V~~~~~----~-~~~~~~~~~v~~g~~v~L~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~--~~~~-  144 (289)
T 3ejj_X           74 PMAGSTTIHLYVKDPAH----S-WNLLAQEVTVVEGQEAVLPCLITDPALK-DSVSLMREGGRQVLRKTVYFF--SPWR-  144 (289)
T ss_dssp             ----CEEEEEEECCSSC----S-EEESCSEEEEETTSCEEECEEESCGGGG-GSEEEEEGGGEECCTTCCEEE--ETTT-
T ss_pred             CCcceeEEEEEEeCCCc----c-eecccceEEEecCCceEeEEEccCCCcc-eEEEEEecCCeecCCCccEEE--CCCC-
Confidence            77777778888876532    2 4444466788899999999999886652 3499986 5555544333221  2233 


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEE-eCCCcEEeEEEEEEEee---CCe--------ecCCCCce-------------E
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVA-NELGEVVTSACLIVDVV---KGK--------DLTSDGRL-------------N  277 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v~~~---~~~--------~~~~~~~~-------------~  277 (325)
                            .|.|.+++.+|+|.|+|.+. +..+.....+.|.|...   ++.        .+..+...             .
T Consensus       145 ------~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  218 (289)
T 3ejj_X          145 ------GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFN  218 (289)
T ss_dssp             ------EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCE
T ss_pred             ------CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceE
Confidence                  69999999999999999999 44444455566666421   110        00001100             0


Q ss_pred             -EEEeCC------------------EEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         278 -IITVGG------------------TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       278 -~~~~~~------------------~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                       .+..++                  ...|.|.+++.+|+|.|+|.|.|..|..++++.|.+..++
T Consensus       219 i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          219 VILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             EEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred             EEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence             011111                  3579999999999999999999999999999999998765

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=205.42  Aligned_cols=241  Identities=15%  Similarity=0.210  Sum_probs=159.2

Q ss_pred             CceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCC---------------C--CCcEEEEe-cCCeEEEEEccCCCCCC
Q psy1095          73 HNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPAT---------------P--NARVTIRE-KEDLRFLEISEVTLEDA  133 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~---------------~--~~~~~~~~-~~~~~~l~i~~~~~~d~  133 (325)
                      ..+++.+|++++|.|.+.+ .+.+.++|+|++....               .  ..+..... .....+|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            3567889999999999865 3455799998643211               0  11222211 12235699999999999


Q ss_pred             eEEEEEEEeC-CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCC
Q psy1095         134 GLYTIKVENN-YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDS  211 (325)
Q Consensus       134 G~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~  211 (325)
                      |.|+|.+.+. .+.......+.+...+.    +.+...+.......|+.+.|.|.+ .+.|.  +.+.|++++..+....
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~--~~i~W~~~~~~~~~~~  160 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPT----VSLIKGPDSLIDGGNETVAAICIAATGKPV--AHIDWEGDLGEMESTT  160 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCE----EEEEECSSCCCTTCSCEEEEEEEEEEEBSC--CEEEECCCSSBCCEEE
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeeccc----cccccccceeEEcCCceEEEEEEecCCcCC--ceEEEEECCccccccc
Confidence            9999999875 45666667777766532    222333334445568899999976 56777  8999999987764321


Q ss_pred             CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe--EEEEEEEeeCCeecC--------CCCce-----
Q psy1095         212 DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT--SACLIVDVVKGKDLT--------SDGRL-----  276 (325)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~v~~~~~~~~~--------~~~~~-----  276 (325)
                      .     ..........+.|.|..+..+|.|.|+|.|.|..+....  .+.|.|...+...+.        .+..+     
T Consensus       161 ~-----~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~  235 (308)
T 4fom_A          161 T-----SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCN  235 (308)
T ss_dssp             E-----ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECC
T ss_pred             c-----eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEE
Confidence            1     111122234468999999999999999999998765443  333333222211110        00000     


Q ss_pred             --------EE-EEe-----------CCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         277 --------NI-ITV-----------GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       277 --------~~-~~~-----------~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                              .+ +..           .+...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|.
T Consensus       236 ~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          236 ADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             EEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred             EecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence                    11 111           1234677889999999999999999999999999999999984

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.96  E-value=2.1e-26  Score=181.05  Aligned_cols=197  Identities=23%  Similarity=0.386  Sum_probs=152.1

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEe-cCCeEEEEEccC-CCCCCeEEEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE-KEDLRFLEISEV-TLEDAGLYTIKV  140 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~-~~~d~G~Y~C~~  140 (325)
                      ..+|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.......... ......|.|.++ +.+|+|.|+|.+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            457899999999999999999999999999999999999999987654333332 234567999999 599999999999


Q ss_pred             EeCCeeEEEEEEEEEECCCcc-cCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCC-CceEEE
Q psy1095         141 ENNYGSVEATARLEIMDPRAI-ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD-MKPEVQ  218 (325)
Q Consensus       141 ~~~~~~~~~~~~l~v~~~~~~-~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~  218 (325)
                      .|..+.....+.|.|...+.. ...|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+..... ......
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~--p~v~W~~~g~~l~~~~~~~~~~~~  161 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPD--PEITWFKDFLPVDTSNNNGRIKQL  161 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSC--CEEEEEETTEEC------CCEEEE
T ss_pred             EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCC--CeEEEEECCccccCcCCCceEEEE
Confidence            999988888888888765322 22366666666778889999999999999888  89999999998865421 111111


Q ss_pred             ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe-EEEEEEEee
Q psy1095         219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDVV  265 (325)
Q Consensus       219 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~  265 (325)
                      ..+    ....|.|.+++.+|+|.|+|.|.|..|.... .+.|.+.+.
T Consensus       162 ~~~----~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~  205 (212)
T 2yd6_A          162 RSE----SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT  205 (212)
T ss_dssp             EET----TEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             ecC----CeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEec
Confidence            111    2478999999999999999999999997654 456666443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=2e-27  Score=199.72  Aligned_cols=249  Identities=18%  Similarity=0.213  Sum_probs=165.6

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEec----CCCeeEEeeCCe---------------eC--CCCCcEEEE-ecCCeEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQ----PAPWTSWSKDGK---------------PA--TPNARVTIR-EKEDLRF  122 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~----p~~~v~W~~~~~---------------~~--~~~~~~~~~-~~~~~~~  122 (325)
                      ++.+...|....+.+|+++.|.|.+.+.    +.+.+.|++++.               .+  ....++.+. ......+
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   93 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT   93 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence            4455566777889999999999998775    445799999541               11  122344433 1223456


Q ss_pred             EEEccCCCCCCeEEEEE-EEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecC---CcEEEEEE-EEecCCCCCe
Q psy1095         123 LEISEVTLEDAGLYTIK-VENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDG---DSVTFECQ-VQVVPPNDHD  197 (325)
Q Consensus       123 l~i~~~~~~d~G~Y~C~-~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g---~~v~l~C~-~~~~~~~~~~  197 (325)
                      |.|.+++.+|+|.|+|. +.+..+.....+.|.|...+..    .+........+.+|   +.+.|.|. +.+.|.  +.
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~----~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~--~~  167 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN----WIEGTQAVLRAKKGQDDKVLVATCTSANGKPP--SV  167 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE----EEEECSSCEEECTTCCCCEEEEEEEEEEEBSC--CE
T ss_pred             EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcc----eeecCCCceeecCCCccceEEEEEEecCCcCC--ce
Confidence            99999999999999998 4566677777888888875321    11223445667778   77999997 778887  89


Q ss_pred             eEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCee--------
Q psy1095         198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD--------  269 (325)
Q Consensus       198 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~--------  269 (325)
                      +.|++++......    ......+......+.|.|.++..+|+|.|+|.|.|..+.....+.|.|...+...        
T Consensus       168 i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~  243 (331)
T 3u83_A          168 VSWETRLKGEAEY----QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNW  243 (331)
T ss_dssp             EEEEESSCCEEEE----EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCC
T ss_pred             EEEEcCCCCcccc----ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCce
Confidence            9999953221110    0011112222344689999999999999999999998887777777764433211        


Q ss_pred             cCCCCce--------------EEEEeCC----------EEEEEEc-CCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         270 LTSDGRL--------------NIITVGG----------TSVLTIE-DITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       270 ~~~~~~~--------------~~~~~~~----------~~~l~i~-~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                      +..+...              ..+..++          ...|.|. ++..+|+|.|+|.|.|..|..+..+.|.|.+.+
T Consensus       244 ~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  322 (331)
T 3u83_A          244 YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA  322 (331)
T ss_dssp             BTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred             EeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence            1111111              1111111          1369999 899999999999999999999999999998765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.96  E-value=7.9e-28  Score=224.29  Aligned_cols=286  Identities=16%  Similarity=0.157  Sum_probs=123.5

Q ss_pred             CCCCCCcccCCCCCCCcccccccccc-c--ccccC--CCCeeE---ecCCceEecCC--CeEEEEEEEEecCCCeeEEee
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAI-R--TRRLT--SSPRFY---AVPHNKICDLG--DTVRFQCSVTGQPAPWTSWSK  101 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~-~--~~~~~--~~p~~~---~~~~~~~v~~g--~~v~l~C~~~~~p~~~v~W~~  101 (325)
                      ..+|.|.+++.+|+|.|+|.+..... .  .+.+.  .+|.+.   ..+....+.+|  +.++|.|.+.+ |.+.+.|++
T Consensus        85 ~~~l~I~~~~~~d~G~Y~C~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~  163 (772)
T 3v2a_R           85 CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCA  163 (772)
T ss_dssp             -----------------------------------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEE
T ss_pred             EEEEEECCCcHhhCEeEEEEEcCCCEEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEEe
Confidence            45889999999999999999863321 1  12222  222221   22445678889  89999999976 778999999


Q ss_pred             C--CeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEE-EEEEEECCCcccCCCeeeecCc-CeeE
Q psy1095         102 D--GKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT-ARLEIMDPRAIISRPKVLNGLE-NLRC  176 (325)
Q Consensus       102 ~--~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~p~~~~~~~-~~~v  176 (325)
                      +  +..+... .......   ...|.|.+++.+|.|.|+|.+.+........ ..+.+...    ..+.+...+. ...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~----~~~~v~~~~~~~~~v  236 (772)
T 3v2a_R          164 RYPEKRFVPDGNRISWDS---KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY----RIYDVVLSPSHGIEL  236 (772)
T ss_dssp             ETTTEEECCCSSSCEEET---TTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECC----CEEEEEEECCSCEEE
T ss_pred             cCCCccccCCCceeecCC---CCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecC----ccceeeeCCCCceEE
Confidence            7  5554333 2222221   2359999999999999999998765533322 33334332    1233333333 3578


Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEe--cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV--DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      .+|+.+.|.|.+.+.+.+.+.+.|++++..+............  ........+.|.|.+++.+|+|.|+|.+.|..+..
T Consensus       237 ~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~  316 (772)
T 3v2a_R          237 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK  316 (772)
T ss_dssp             ETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEE
T ss_pred             ecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcce
Confidence            9999999999999865433789999998876543221110000  00112245789999999999999999999998888


Q ss_pred             EeEEEEEEEeeCCeecC----------CCCce------------EE-EEeC-----------CEEEEEEcCCCCCCCeEE
Q psy1095         255 VTSACLIVDVVKGKDLT----------SDGRL------------NI-ITVG-----------GTSVLTIEDITGDDSGKY  300 (325)
Q Consensus       255 ~~~~~l~v~~~~~~~~~----------~~~~~------------~~-~~~~-----------~~~~l~i~~v~~~d~G~Y  300 (325)
                      ...+.|.|...+...+.          .+..+            .+ +..+           +...|.|.++..+|+|.|
T Consensus       317 ~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y  396 (772)
T 3v2a_R          317 KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNY  396 (772)
T ss_dssp             EEEEEEEEECCCC-------------------------------------------------------------------
T ss_pred             eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceE
Confidence            87888887554321111          00000            00 1111           226799999999999999


Q ss_pred             EEEEECCCeeE--EeEEEEEEecccCC
Q psy1095         301 QVHVSNQHGSD--SCYASVAVEGRKII  325 (325)
Q Consensus       301 ~C~a~n~~g~~--~~~~~l~V~~~p~i  325 (325)
                      +|.|.|..|..  +..+.|.|..+|.|
T Consensus       397 ~C~a~n~~g~~~~s~~~~l~v~~~P~~  423 (772)
T 3v2a_R          397 TVILTNPISKEKQSHVVSLVVYVPPQI  423 (772)
T ss_dssp             ---------------------------
T ss_pred             EEEEEECCcCeEEEEEEEEEEecCCcc
Confidence            99999999865  44577888777754

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=4.7e-28  Score=199.91  Aligned_cols=222  Identities=14%  Similarity=0.170  Sum_probs=162.6

Q ss_pred             CCCCCcccCCCCCCCccccccccccc-----ccccCCCCe-eEecCCceEecCCCeEEEEEEEEecCC--CeeEEeeC-C
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIR-----TRRLTSSPR-FYAVPHNKICDLGDTVRFQCSVTGQPA--PWTSWSKD-G  103 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~-----~~~~~~~p~-~~~~~~~~~v~~g~~v~l~C~~~~~p~--~~v~W~~~-~  103 (325)
                      .+|.|.+++.+|+|.|+|.+.+..+.     .+.+..+|. +...+....+.+|+.+.|.|.+.+ |.  +.+.|+++ +
T Consensus        51 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~  129 (292)
T 4dkd_C           51 SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRG  129 (292)
T ss_dssp             EEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGG
T ss_pred             EEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCC
Confidence            47889999999999999999875432     233445554 456677788999999999999987 43  78999997 5


Q ss_pred             eeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE-EEEEEEEECCCcccCCCeeeecCcCeeEecCCcE
Q psy1095         104 KPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV  182 (325)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v  182 (325)
                      ..+....++......   .|.|.+++..|+|.|+|.+.+..+... ..+.|.|.....  .+|.+...+....+.+|+.+
T Consensus       130 ~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~--~~p~i~~~~~~~~~~~g~~v  204 (292)
T 4dkd_C          130 RPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP--GPPALTLVPAELVRIRGEAA  204 (292)
T ss_dssp             CCCCSSCCEECCSSS---CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCC--SSCEEEEESSCBCCCSSSCE
T ss_pred             CccccCCcccccCCc---eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCC--CCCeEEccCCceeEecCCCE
Confidence            555555555443333   399999999999999999998766443 367777775311  25777777766677899999


Q ss_pred             EEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       183 ~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      .|.|.+.+.+++ +.+.|++++..+.......    .........+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus       205 ~l~C~~~~~~~~-~~~~w~~~~~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  279 (292)
T 4dkd_C          205 QIVCSASSVDVN-FDVFLQHNNTKLAIPQQSD----FHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV  279 (292)
T ss_dssp             EEEEEEEESSSC-CEEECCBSSCCCCCCBEEE----EETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC
T ss_pred             EEEEEecCCCCc-eEEEEeCCCcccccCccce----eccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEE
Confidence            999999987753 6789999887664332211    11111224468999999999999999999999999998888888


Q ss_pred             Eee
Q psy1095         263 DVV  265 (325)
Q Consensus       263 ~~~  265 (325)
                      ...
T Consensus       280 ~~~  282 (292)
T 4dkd_C          280 VES  282 (292)
T ss_dssp             ---
T ss_pred             eeC
Confidence            443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=1.7e-27  Score=199.96  Aligned_cols=234  Identities=20%  Similarity=0.245  Sum_probs=161.4

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEec---------CCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCe-E
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQ---------PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAG-L  135 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~---------p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~  135 (325)
                      ...........+.+|+++.|.|.+.+.         |.+.+.|+|++..+....+.  ..   ..+|.|.+++.+|+| .
T Consensus        30 ~c~~~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~---~~~L~i~~v~~~D~Gs~  104 (329)
T 3oq3_B           30 SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VK---NGDLWIANYTSNDSHRR  104 (329)
T ss_dssp             TSEEEEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EE---TTEEEESSCCGGGGGCC
T ss_pred             CcccCCcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--ee---cceEEEcCCChHhCCCc
Confidence            333334456678999999999998774         55799999998776543332  11   236999999999999 9


Q ss_pred             EEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecC-CCCCeeEEeeCCEEeccCCCCc
Q psy1095         136 YTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMK  214 (325)
Q Consensus       136 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~~~~~W~~~~~~~~~~~~~~  214 (325)
                      |+|.+.|..|.......+.+...+     |.+........+.+|+.+.|.|.+.+.| .  +.+.|++++..+..... .
T Consensus       105 Y~C~a~n~~g~~~~~~~~~v~~~~-----p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~--~~i~W~k~~~~l~~~~~-~  176 (329)
T 3oq3_B          105 YLCTVTTKNGDCVQGIVRSHIRKP-----PSCIPETYELGTHDKYGIDLYCGILYAKHY--NNITWYKNNQELIIDGT-K  176 (329)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECCC-----CSCEEEEEETTSSTTTCEEEECCCCSCCCC--CEEEEEETTEECCCSSS-S
T ss_pred             EEEEEEeCCCceeeEEEEEEEcCC-----CcEeccccceEEeCCCcEEEEeccCCCCCC--ceEEEEECCccCCCCCc-e
Confidence            999999988755444433444432     2222222223456799999999999988 6  89999999998853332 2


Q ss_pred             eEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC--CCcEEeE----EEEEEEeeCC---e-------ecC-------
Q psy1095         215 PEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE--LGEVVTS----ACLIVDVVKG---K-------DLT-------  271 (325)
Q Consensus       215 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~----~~l~v~~~~~---~-------~~~-------  271 (325)
                      ... ..       ..|.|.+++.+|+|.|+|.|.|.  .+.....    +.|.|...+.   +       .+.       
T Consensus       177 ~~~-~~-------~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l  248 (329)
T 3oq3_B          177 YSQ-SG-------QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANI  248 (329)
T ss_dssp             EEE-ET-------TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEE
T ss_pred             Eec-CC-------CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEE
Confidence            221 22       48999999999999999999987  5433332    5555543321   0       000       


Q ss_pred             -------C--CCceE-EEEeC---------------------CEEEEEEcCCCCCCCe-EEEEEEECCCeeEEeEEEEEE
Q psy1095         272 -------S--DGRLN-IITVG---------------------GTSVLTIEDITGDDSG-KYQVHVSNQHGSDSCYASVAV  319 (325)
Q Consensus       272 -------~--~~~~~-~~~~~---------------------~~~~l~i~~v~~~d~G-~Y~C~a~n~~g~~~~~~~l~V  319 (325)
                             +  ...+. .+..+                     ....|.|.++..+|+| .|+|.|.|..|....++.|.|
T Consensus       249 ~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          249 TCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence                   1  01101 11111                     2357999999999999 999999999999999999987


Q ss_pred             e
Q psy1095         320 E  320 (325)
Q Consensus       320 ~  320 (325)
                      +
T Consensus       329 ~  329 (329)
T 3oq3_B          329 E  329 (329)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.95  E-value=9.1e-29  Score=206.51  Aligned_cols=228  Identities=17%  Similarity=0.245  Sum_probs=158.4

Q ss_pred             ceEecCCCeEEEEEEEEecC-CCeeEEeeCCeeCC----CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE
Q psy1095          74 NKICDLGDTVRFQCSVTGQP-APWTSWSKDGKPAT----PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE  148 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p-~~~v~W~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  148 (325)
                      .+.+.+|+++.|.|.+.+.| .+.+.|+|++..+.    ...++...  +  ..|.|.+++.+|+|.|+|.+.|..+...
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   89 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH--K--EKLWFVPAKVEDSGHYYCVVRNSSYCLR   89 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEEC--S--SBEECTTCCGGGCSCCEECCCSSSCCCC
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEecc--C--CeEEECCCChhhCEEEEEEEeCCceEEE
Confidence            45688999999999998877 78999999986532    12233322  2  2699999999999999999998877666


Q ss_pred             EEEEEEEECCCcccCCCeeeec---CcCeeEecCCcEEEEEEE------EecCCCCCeeEEeeCCEEeccCCCCceEEEe
Q psy1095         149 ATARLEIMDPRAIISRPKVLNG---LENLRCCDGDSVTFECQV------QVVPPNDHDISWFRNNRLIKLDSDMKPEVQV  219 (325)
Q Consensus       149 ~~~~l~v~~~~~~~~~p~~~~~---~~~~~v~~g~~v~l~C~~------~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  219 (325)
                      ..+.+.+...+     |.+...   .....+..|+.+.|.|.+      .+.|.  +.+.|++++..+...... . ...
T Consensus        90 ~~~~v~v~~~~-----p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~--~~i~W~k~~~~l~~~~~~-~-~~~  160 (315)
T 1itb_B           90 IKISAKFVENE-----PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL--PKLQWYKDCKPLLLDNIH-F-SGV  160 (315)
T ss_dssp             EECCCEEECCC-----TTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCC--CCCEEEETTEECCCCSSS-E-EEE
T ss_pred             EEEEEEEeCCC-----CCcccccccccceEEecCCCeEEEEecccccccCCCCC--CEEEEEECCEECCCccce-E-eec
Confidence            55555554431     222111   123467889999999998      67776  899999999988654322 1 112


Q ss_pred             cCCcceeEEEEEeCCCCCCCCeEEEEEEE-eCCCcEE---eEEEEEEE--------------------------------
Q psy1095         220 DSKENLVIARLKIPHVYPEDEGEFTCRVA-NELGEVV---TSACLIVD--------------------------------  263 (325)
Q Consensus       220 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~---~~~~l~v~--------------------------------  263 (325)
                      .       ..|.|.+++.+|+|.|+|.|. |..|...   ..+.+.+.                                
T Consensus       161 ~-------~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~  233 (315)
T 1itb_B          161 K-------DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV  233 (315)
T ss_dssp             T-------TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE
T ss_pred             C-------ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE
Confidence            2       389999999999999999999 7777652   23333221                                


Q ss_pred             ----------eeCCeecCCCCceE----EEEeC--------CEEEEEEcCCCCCC-CeEEEEEEECCCeeEEeEEEEEEe
Q psy1095         264 ----------VVKGKDLTSDGRLN----IITVG--------GTSVLTIEDITGDD-SGKYQVHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       264 ----------~~~~~~~~~~~~~~----~~~~~--------~~~~l~i~~v~~~d-~G~Y~C~a~n~~g~~~~~~~l~V~  320 (325)
                                ..++..+.......    .....        ....|.|.++..+| +|.|+|.|.|..|..+.++.|.|+
T Consensus       234 ~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          234 TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             EECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             ecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence                      11111111111000    00000        12379999999999 999999999999999999999987


Q ss_pred             c
Q psy1095         321 G  321 (325)
Q Consensus       321 ~  321 (325)
                      .
T Consensus       314 ~  314 (315)
T 1itb_B          314 V  314 (315)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.95  E-value=2.7e-27  Score=198.68  Aligned_cols=248  Identities=20%  Similarity=0.229  Sum_probs=152.4

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCCeeCC---------CCCcEEEEec-----CCeEEEEEccCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKPAT---------PNARVTIREK-----EDLRFLEISEVT  129 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~~~---------~~~~~~~~~~-----~~~~~l~i~~~~  129 (325)
                      ...|...|....+.+|+++.|.|.+.+. |.+.+.|+|++.+..         ...++.....     .....|.|.+++
T Consensus         3 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            3 ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CCCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             eeEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence            3456677888899999999999999886 888999999875431         1113332211     334579999999


Q ss_pred             CCCCeEEEEEEEeCCee-----EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC
Q psy1095         130 LEDAGLYTIKVENNYGS-----VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN  204 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~  204 (325)
                      .+|+|.|+|.+.+..+.     ....+.|.|...+.   .|.+. . ....+.+|+.+.|.|.+.+.|++...+.|++++
T Consensus        83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~---~p~i~-~-~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g  157 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPS---APVVS-G-PAARATPQHTVSFTCESHGFSPRDITLKWFKNG  157 (327)
T ss_dssp             GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCC---CCEEE-C-CSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCC---Cceee-c-cccccCCCCEEEEEEEEeCccCCCcEEEEEECC
Confidence            99999999999987542     12345777776532   34443 2 235678899999999999988732389999999


Q ss_pred             EEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE---EeEEEE----------EEE--------
Q psy1095         205 RLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV---VTSACL----------IVD--------  263 (325)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~l----------~v~--------  263 (325)
                      ..+...... ......+..+...+.|.|.....+|.|.|+|.|.|..+..   .....+          .+.        
T Consensus       158 ~~l~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~  236 (327)
T 2wng_A          158 NELSDFQTN-VDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAEN  236 (327)
T ss_dssp             EECCCEEEE-EECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTT
T ss_pred             EEccccccc-cccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCC
Confidence            887643211 0000111223344678888877778899999999976642   221111          110        


Q ss_pred             --------------------eeCCeecCCCCceEEE-EeCCE----EEEEEcCCCCCCCeEEEEEEECCCeeE-EeEEEE
Q psy1095         264 --------------------VVKGKDLTSDGRLNII-TVGGT----SVLTIEDITGDDSGKYQVHVSNQHGSD-SCYASV  317 (325)
Q Consensus       264 --------------------~~~~~~~~~~~~~~~~-~~~~~----~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l  317 (325)
                                          .+++..+..+...... ..++.    ..|.|..+..+|+|.|+|.|.|..|.. +.++.+
T Consensus       237 ~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~  316 (327)
T 2wng_A          237 QVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL  316 (327)
T ss_dssp             CCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred             cEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence                                1111111100000000 11121    358899999999999999999999864 444444


Q ss_pred             E
Q psy1095         318 A  318 (325)
Q Consensus       318 ~  318 (325)
                      .
T Consensus       317 ~  317 (327)
T 2wng_A          317 K  317 (327)
T ss_dssp             C
T ss_pred             E
Confidence            3

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.95  E-value=1.5e-25  Score=173.03  Aligned_cols=181  Identities=20%  Similarity=0.322  Sum_probs=142.7

Q ss_pred             CCCeeEecCCceEecC-CCeEEEEEEEEecCC--CeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDL-GDTVRFQCSVTGQPA--PWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~-g~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      .||.|... ....+.+ |+++.|.|.+.+.|.  +.+.|++++..+.......     ....|.|.+++.+|+|.|+|.+
T Consensus         2 ~~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~   75 (190)
T 2wv3_A            2 NEPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVY   75 (190)
T ss_dssp             -CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEE
Confidence            46777764 4455666 999999999998876  7899999999887654322     3467999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEeccCC-CCceEE
Q psy1095         141 ENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIKLDS-DMKPEV  217 (325)
Q Consensus       141 ~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~~~~-~~~~~~  217 (325)
                      .+. +.....+.|.|..+      |.+...+....+..|+.+.|.|.+.+.|.  +.+.|++  ++..+.... ..+...
T Consensus        76 ~n~-~~~~~~~~l~V~~~------p~~~~~~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~~g~~~~~~~~~~~~~~  146 (190)
T 2wv3_A           76 HFV-SAPKANATIEVKAA------PDITGHKRSENKNEGQDAMMYCKSVGYPH--PEWMWRKKENGVFEEISNSSGRFFI  146 (190)
T ss_dssp             EET-TEEEEEEEEEEECC------CEEEEECSEEEEETTSCEEEEEEEECSSC--CEEEEEEEETTEEEECCCTTSCEEE
T ss_pred             EeC-CcccccEEEEEecC------CcccccCCcceeeCCCcEEEEEEeCccCC--CceEEEEcCCCceeeeecCCCeEEE
Confidence            998 77778888888775      56666666677899999999999999888  8999999  777665322 112222


Q ss_pred             EecCCcceeEEEEEeCCCC-CCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         218 QVDSKENLVIARLKIPHVY-PEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       218 ~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      ...+    ....|.|.+++ .+|+|.|+|.|.|..|.....+.|.|.
T Consensus       147 ~~~~----~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          147 INKE----NYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EECS----SEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ecCC----CeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            2222    23589999999 799999999999999999888888774

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.95  E-value=2.6e-28  Score=201.47  Aligned_cols=236  Identities=16%  Similarity=0.190  Sum_probs=162.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.|...+....+.+|+++.|.|.+.+.    +.|++++..     ............|.|.+++.+|+|.|+|.+.+.
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence            58899888888899999999999998763    899965432     233334445678999999999999999999887


Q ss_pred             CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC-CEEeccCCCCceEEEecCC
Q psy1095         144 YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~  222 (325)
                      .+.....+.|.|..++.     .+...+....+.+|+.+.|.|.+.+ +...+.+.|+++ +..+........  ...+ 
T Consensus        74 ~~~~~~~~~l~V~~~~~-----~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~-  144 (292)
T 4dkd_C           74 PLGGSAAIHLYVKDPAR-----PWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSF--SPWH-  144 (292)
T ss_dssp             ---CCEEECCEECCSSC-----CEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEEC--CSSS-
T ss_pred             CCCcceEEEEEEcCccc-----cccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccc--cCCc-
Confidence            77667777888876532     2233445677889999999999986 332257999997 444433322211  1222 


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe-EEEEEEEee---CCee--------cCCCCce-------------E
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDVV---KGKD--------LTSDGRL-------------N  277 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~---~~~~--------~~~~~~~-------------~  277 (325)
                            .|.|.+++.+|+|.|+|.+.|..+.... .+.|.|...   ++..        +..+...             .
T Consensus       145 ------~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~  218 (292)
T 4dkd_C          145 ------GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFD  218 (292)
T ss_dssp             ------CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCE
T ss_pred             ------eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceE
Confidence                  4999999999999999999988775543 666766531   1100        0001100             0


Q ss_pred             EE---------------EeC----CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         278 II---------------TVG----GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       278 ~~---------------~~~----~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                      +.               ...    ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.++.
T Consensus       219 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA  283 (292)
T ss_dssp             EECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             EEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence            10               011    12479999999999999999999999999999999998764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.95  E-value=6.5e-26  Score=175.84  Aligned_cols=177  Identities=20%  Similarity=0.328  Sum_probs=144.5

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCCCC--cEEEEecCC-------eEEEEEccCCCCCCe
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNA--RVTIREKED-------LRFLEISEVTLEDAG  134 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~-------~~~l~i~~~~~~d~G  134 (325)
                      +|.|...|....+.+|+++.|.|.+. +.|.+.+.|++++..+....  ++.+....+       ...|.|.+++..|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            68899999999999999999999998 89999999999999987663  344433332       468999999999999


Q ss_pred             EEEEEEEeCCeeEEE-EEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCC-eeEEeeCCEEeccCCC
Q psy1095         135 LYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSD  212 (325)
Q Consensus       135 ~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~-~~~W~~~~~~~~~~~~  212 (325)
                      .|+|.+.+..+.... .+.|.|...      |.+...+....+.+|+.+.|.|.+.+.|.  + .+.|++++..+.....
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~v~W~~~~~~~~~~~~  153 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGL------PYFLEEPEDRTVAANTPFNLSCQAQGPPE--PVDLLWLQDAVPLATAPG  153 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCS------CEEEECCCCEEECTTCCEEEEEEEECSSC--CCEEEEEESSCBSSSSTT
T ss_pred             EEEEEEEeCCCceecccEEEEEecC------CeEEcCCCcEEEcCCCEEEEEeECCCCCC--CCEEEEEECCEeccCCCC
Confidence            999999998775443 377777654      56666666778889999999999999987  7 9999999988765443


Q ss_pred             CceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE-eEEEEEE
Q psy1095         213 MKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV-TSACLIV  262 (325)
Q Consensus       213 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v  262 (325)
                      .     .      ....|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       154 ~-----~------~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          154 H-----G------PQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             S-----S------CCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             c-----C------CCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            2     1      23589999987  78999999999999886 6778877

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.95  E-value=5.3e-28  Score=211.42  Aligned_cols=220  Identities=17%  Similarity=0.197  Sum_probs=144.3

Q ss_pred             CCCCCcccCCCCCCCccccccccccc--------ccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIR--------TRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTS   98 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~--------~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~   98 (325)
                      .+|.|.+++++|+|.|.|.+.+....        .+.+.    .+|.+...+....+.+|+.+.|.|.+.+. |.| .+.
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  158 (444)
T 1igt_B           79 LYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  158 (444)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEE
Confidence            47899999999999999999775321        12222    24555543333345789999999999884 776 999


Q ss_pred             EeeCCeeCCCCCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEEC------------CCcccC
Q psy1095          99 WSKDGKPATPNARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD------------PRAIIS  163 (325)
Q Consensus        99 W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~------------~~~~~~  163 (325)
                      |++++..+...........+   ....|.|.++..+| |.|+|.+.|..+.......+.+..            ......
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  237 (444)
T 1igt_B          159 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLG  237 (444)
T ss_dssp             EGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCC
T ss_pred             EecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCC
Confidence            99988763210000000111   12358899999889 999999999887654333333210            001112


Q ss_pred             CCeeeecCcCee--EecCCcEEEEEEEEecC--CCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         164 RPKVLNGLENLR--CCDGDSVTFECQVQVVP--PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       164 ~p~~~~~~~~~~--v~~g~~v~l~C~~~~~~--~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      +|.+...+....  +.+|+.++|.|.+.+.+  ++.+.+.|++++..+......... ...+......+.|.|.+++.+|
T Consensus       238 ~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~d  316 (444)
T 1igt_B          238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHR-EDYNSTLRVVSALPIQHQDWMS  316 (444)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCE-EECSSSEEEEEEEECCHHHHHT
T ss_pred             CceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccce-eCCCCcEEEEEEEEEcHHHhcc
Confidence            455433332322  47899999999999985  323699999999887644322111 1122223345789999999999


Q ss_pred             CeEEEEEEEeCCCcE
Q psy1095         240 EGEFTCRVANELGEV  254 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~~  254 (325)
                      +|.|+|.|.|..+..
T Consensus       317 ~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          317 GKEFKCKVNNKDLPA  331 (444)
T ss_dssp             TCEEEEEEECTTCSS
T ss_pred             CCcEEEEEEcCCCCC
Confidence            999999999987754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=1.1e-27  Score=200.14  Aligned_cols=243  Identities=14%  Similarity=0.137  Sum_probs=150.4

Q ss_pred             ccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        61 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      ....+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|++..+.....    .......|.|.+++.+|+|.|+|.+
T Consensus        20 ~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a   93 (316)
T 3vh8_G           20 GGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH----GRIFQESFNMSPVTTAHAGNYTCRG   93 (316)
T ss_dssp             ----CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH----HCCBSSCEEECSCCGGGCEEEEEEE
T ss_pred             CCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec----CCcceEEEEECCCCcccCeEEEEEE
Confidence            3447889988887 568899999999999876 678999999987643211    1112345999999999999999999


Q ss_pred             EeCC-----eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCce
Q psy1095         141 ENNY-----GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP  215 (325)
Q Consensus       141 ~~~~-----~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  215 (325)
                      .+..     ......+.|.|....   .+|.+...+.. .+.+|+.++|.|.+. .++  +.+.|++++..+........
T Consensus        94 ~~~~~~~~~~~~s~~~~l~V~~~~---~~p~~~~~~~~-~v~~G~~v~L~C~~~-~~~--~~~~w~k~g~~~~~~~~~~~  166 (316)
T 3vh8_G           94 SHPHSPTGWSAPSNPVVIMVTGNH---RKPSLLAHPGP-LVKSGERVILQCWSD-IMF--EHFFLHKEGISKDPSRLVGQ  166 (316)
T ss_dssp             BCSSSSSSBCCCCCCEEEEEECSS---CCCEEEEESCS-EEETTCCEEEEEEES-SCC--SEEEEEETTCCSCCEEEECE
T ss_pred             EcCCCCcceecCCCcEEEEEecCC---CCCeEEecCCC-ccCCCCeEEEEEcCC-CCC--cEEEEEECCCccccceeeee
Confidence            7532     223445667776542   34666655444 388999999999984 344  68999999876642211000


Q ss_pred             EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE-----EeEEEEEEEeeC---------CeecCCCCceE----
Q psy1095         216 EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV-----VTSACLIVDVVK---------GKDLTSDGRLN----  277 (325)
Q Consensus       216 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~~---------~~~~~~~~~~~----  277 (325)
                      . ..    ......|.|.+++.+|+|.|+|.|.|..+..     ...+.|.|....         ...+..+..+.    
T Consensus       167 ~-~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~  241 (316)
T 3vh8_G          167 I-HD----GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCS  241 (316)
T ss_dssp             E-ET----TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEE
T ss_pred             e-cC----CCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEE
Confidence            0 00    1134689999999999999999999987641     333445443211         11111111110    


Q ss_pred             --------EEEeC-----------------CEEEEEEcCCCCCCCeEEEEEEECCCee-----EEeEEEEEEeccc
Q psy1095         278 --------IITVG-----------------GTSVLTIEDITGDDSGKYQVHVSNQHGS-----DSCYASVAVEGRK  323 (325)
Q Consensus       278 --------~~~~~-----------------~~~~l~i~~v~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~~~p  323 (325)
                              .+..+                 ....|.|.+++  |+|.|+|.|.|..+.     .+..+.|.|.++|
T Consensus       242 ~~~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          242 SRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             ESSCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             CCCCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence                    01111                 12579999999  999999999997763     4566889998887

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.95  E-value=2e-27  Score=201.22  Aligned_cols=234  Identities=16%  Similarity=0.167  Sum_probs=146.1

Q ss_pred             CCceEecCCCeEEEEEEEEecC-----------CCeeEEeeCCee------CC-CCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQP-----------APWTSWSKDGKP------AT-PNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p-----------~~~v~W~~~~~~------~~-~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +..+.+.+|+++.|.|.+.+.|           .+.+.|++++..      +. ......+...+  ..|.|.+++.+|+
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~D~   91 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK--DVLWFRPTLLNDT   91 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEET--TEEEESSCCGGGC
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecC--CEEEEccCChhhC
Confidence            4566789999999999998755           489999998742      21 00111121222  2699999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-----EecCCCCCeeEEeeCCEEec
Q psy1095         134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-----QVVPPNDHDISWFRNNRLIK  208 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-----~~~~~~~~~~~W~~~~~~~~  208 (325)
                      |.|+|.+.|..+.....+.|.|...+.... + ....+....+.+|+.+.|.|.+     .+.|.  +.+.|++++..+.
T Consensus        92 G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~-~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~--~~v~W~k~~~~l~  167 (349)
T 4dep_C           92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFN-S-PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVK--PTITWYMGCYKIQ  167 (349)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTSC-C-SCCCCEEEEETTCSEEEEECCSCTTSSCTTSC--CEEEEEETTEECC
T ss_pred             EEEEEEEecCCceEEEEEEEEEecCCcccC-c-ccccCcceeeecCccEEEEcCCCcccccCCCC--ceEEEeeCCEECC
Confidence            999999999888888888888887543211 1 1122234467789999999975     55666  8999999999875


Q ss_pred             cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC-CcE---EeEEEEEEEee-----CCeec---------
Q psy1095         209 LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL-GEV---VTSACLIVDVV-----KGKDL---------  270 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~---~~~~~l~v~~~-----~~~~~---------  270 (325)
                      ...  ...  ..+      ..|.|.+++.+|+|.|+|.|.|.. +..   ...+.|.|...     ++..+         
T Consensus       168 ~~~--~~~--~~~------~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~  237 (349)
T 4dep_C          168 NFN--NVI--PEG------MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYE  237 (349)
T ss_dssp             SCS--SEE--EET------TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC---------
T ss_pred             Ccc--cee--ecC------CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEE
Confidence            432  211  222      479999999999999999999986 443   44555555332     11110         


Q ss_pred             -C-----------C-----CCceEE-EEe-----------------------CC---EEEEEEcCCCCCCC-eEEEEEEE
Q psy1095         271 -T-----------S-----DGRLNI-ITV-----------------------GG---TSVLTIEDITGDDS-GKYQVHVS  305 (325)
Q Consensus       271 -~-----------~-----~~~~~~-~~~-----------------------~~---~~~l~i~~v~~~d~-G~Y~C~a~  305 (325)
                       .           .     .....+ +..                       ++   ...|.|.++..+|+ |.|+|.|.
T Consensus       238 v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~  317 (349)
T 4dep_C          238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR  317 (349)
T ss_dssp             -------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEE
T ss_pred             EecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEE
Confidence             0           0     000111 111                       11   22399999999999 99999999


Q ss_pred             CCCeeEEeEEEEEEec
Q psy1095         306 NQHGSDSCYASVAVEG  321 (325)
Q Consensus       306 n~~g~~~~~~~l~V~~  321 (325)
                      |..|.....+.|.|+.
T Consensus       318 N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          318 SAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             CSSCEEEEECC-----
T ss_pred             cCCCcEEEEEEEeeec
Confidence            9999999999999986

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.95  E-value=6.3e-26  Score=175.26  Aligned_cols=183  Identities=22%  Similarity=0.341  Sum_probs=145.1

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecC-CCeeEEee-CCeeCC-CCCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSK-DGKPAT-PNARVTIRE-KEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~~-~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      |+.+...|.+..+.+|+++.|.|.+.+.+ .+.+.|++ ++..+. ...++.+.. ......|.|.+++.+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            56788889999999999999999998876 78999999 887776 334555433 245678999999999999999999


Q ss_pred             EeCC-eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEe
Q psy1095         141 ENNY-GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV  219 (325)
Q Consensus       141 ~~~~-~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  219 (325)
                      .+.. +.....+.|.|..+      |.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+............
T Consensus        82 ~~~~~~~~~~~~~l~v~~~------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~~~~~~~~~~~~~~~~~  153 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQK------LMFKNAPTPQEFKEGEDAVIVCDVVSSLP--PTIIWKHKGRDVILKKDVRFIVLS  153 (191)
T ss_dssp             EETTTEEEEEEEEEEEECC------SEEEECCSSEECCTTSCEEECCEEECSSC--CEEEEEETTEEGGGGCCTTEEECT
T ss_pred             EcCCCcceEEEEEEEeecC------ceEecCCCcEeecCCCeEEEEEEECCCCC--CEEEEEECCEEeeccCCceEEEec
Confidence            9987 55667777777654      56666666777889999999999999888  889999999988755443333222


Q ss_pred             cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       220 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      .+       .|.|.+++.+|+|.|+|.|.|..+.......+.|
T Consensus       154 ~~-------~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          154 NN-------YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             TS-------CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CC-------eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            22       7999999999999999999998876655555544

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.95  E-value=5.1e-28  Score=204.87  Aligned_cols=247  Identities=14%  Similarity=0.147  Sum_probs=143.6

Q ss_pred             eeeecccCCCCcc---------cCCCCCCCCCCCCCcccCCCCCCCcccccccccccc-----cccCCCCeeE----ecC
Q psy1095          11 LSVKLTRPSGLMS---------GHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSSPRFY----AVP   72 (325)
Q Consensus        11 ~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~p~~~----~~~   72 (325)
                      ..+.|.+++....         ..........+|.|.+++.+|+|.|+|.+.+.....     +.+..+|.+.    ..|
T Consensus        48 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~  127 (349)
T 4dep_C           48 LTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLP  127 (349)
T ss_dssp             CEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCC
T ss_pred             ceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccC
Confidence            5677887774211         111112234578999999999999999998764422     2222333221    223


Q ss_pred             CceEecCCCeEEEEEEE-----EecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC-ee
Q psy1095          73 HNKICDLGDTVRFQCSV-----TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY-GS  146 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~  146 (325)
                      ....+.+|+.+.|.|.+     .+.|.+.+.|++++..+....++...  +  ..|.|.+++.+|+|.|+|.+.|.. +.
T Consensus       128 ~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~--~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~  203 (349)
T 4dep_C          128 VHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPE--G--MNLSFLIALISNNGNYTCVVTYPENGR  203 (349)
T ss_dssp             EEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEE--T--TEEEEESCCGGGCEEEEEEEEEEETTE
T ss_pred             cceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeec--C--CEEEEeeeeecCCcEEEEEEEEeeCCE
Confidence            45578899999999985     67889999999999988654443322  2  369999999999999999999865 43


Q ss_pred             E---EEEEEEEEECCCcccCCCeeeecCcCe--eEecCCcEEEEEEEEec----CCCCCeeEEeeCCEEecc-CCCCceE
Q psy1095         147 V---EATARLEIMDPRAIISRPKVLNGLENL--RCCDGDSVTFECQVQVV----PPNDHDISWFRNNRLIKL-DSDMKPE  216 (325)
Q Consensus       147 ~---~~~~~l~v~~~~~~~~~p~~~~~~~~~--~v~~g~~v~l~C~~~~~----~~~~~~~~W~~~~~~~~~-~~~~~~~  216 (325)
                      .   ...+.|.|...+....+|.+.......  .+..|+.+.|.|.+.+.    |.  +.+.|++++..+.. .......
T Consensus       204 ~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~--p~v~W~~~g~~l~~~~~~~~~~  281 (349)
T 4dep_C          204 TFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSR--NEVWWTIDGKKPDDITIDVTIN  281 (349)
T ss_dssp             EEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCC--CEEEEESSCC--------CCCC
T ss_pred             EEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCC--CEEEEEECCEEccccCCccccc
Confidence            3   566777777653322346655444332  67889999999999954    55  89999999988765 2222211


Q ss_pred             EEe---cCCcceeEEEEEeCCCCCCCC-eEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         217 VQV---DSKENLVIARLKIPHVYPEDE-GEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       217 ~~~---~~~~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      ...   ..........|.|.+++.+|+ |.|+|.|.|..|.....+.|.|.
T Consensus       282 ~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          282 ESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             EEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC----
T ss_pred             cceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeee
Confidence            000   001122346699999999999 99999999999999988888874

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.95  E-value=2.4e-26  Score=177.71  Aligned_cols=184  Identities=25%  Similarity=0.437  Sum_probs=146.0

Q ss_pred             cCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        62 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      +..+|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..++.+...+  ..|.|.+++..|+|.|+|.+
T Consensus         4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~   81 (192)
T 2iep_A            4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG--QLLTILSVEDSDDGIYCCTA   81 (192)
T ss_dssp             CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG--TEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc--cEEEEcCCCcccCeEEEEEE
Confidence            34577888888888899999999999999999999999999998865 3455554333  36999999999999999999


Q ss_pred             EeCCee-EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEe
Q psy1095         141 ENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV  219 (325)
Q Consensus       141 ~~~~~~-~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  219 (325)
                      .+..+. ......|.|...      |.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+........  ..
T Consensus        82 ~~~~~~~~~~~~~l~v~~~------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~~~~~~~~~~~~~--~~  151 (192)
T 2iep_A           82 NNGVGGAVESCGALQVKMK------PKITRPPINVKIIEGLKAVLPCTTMGNPK--PSVSWIKGDSALRENSRIAV--LE  151 (192)
T ss_dssp             ECSSSCCEEEEEEEEEEEE------EEEEECCCCEEEETTSCEEECCEEEEESC--CEEEEEETTEECCCCSSEEE--CT
T ss_pred             EcCCCceeEeEEEEEEEeC------CccccCCcceEEeCCCcEEEEEEEeccCC--ceEEEEeCCEEccCCCcEEE--ec
Confidence            987765 445566777654      45555555677889999999999999988  79999999998875543221  12


Q ss_pred             cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE-eEEEEEEEe
Q psy1095         220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV-TSACLIVDV  264 (325)
Q Consensus       220 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~  264 (325)
                      .       ..|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..
T Consensus       152 ~-------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          152 S-------GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             T-------SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             C-------CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            2       2799999999999999999999998774 457777744

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.95  E-value=1.9e-26  Score=180.13  Aligned_cols=184  Identities=15%  Similarity=0.207  Sum_probs=137.6

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecC--CeEEEEEccCCCCCCeEEEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKE--DLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      +|.|... ....+.+|+.+.|.|.+.+ .|.|.++|++++.++..+.++.+..+.  +...|.|.+++.+|+|.|+|.+.
T Consensus         3 ~p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            3 DPFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             ---CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            3555443 3567899999999999864 799999999999999887777766544  55689999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCCc---------------ccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCeeEEeeCCE
Q psy1095         142 NNYGSVEATARLEIMDPRA---------------IISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHDISWFRNNR  205 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~~---------------~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~  205 (325)
                      |..  ......+.+.....               ...+|.+.... ...+.+|+.+.|.|.+.+. |.  +.+.|+|++.
T Consensus        82 Ng~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~--p~i~W~k~g~  156 (207)
T 3rbs_A           82 DGK--ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKE--THIVWYKDER  156 (207)
T ss_dssp             ETT--EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTT--CEEEEEETTE
T ss_pred             CCC--eEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCC--CEEEEEECCE
Confidence            943  33333332211000               00246665544 4678899999999999998 77  8999999999


Q ss_pred             EeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         206 LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      .+..+.+..    ...    ....|.|.+++.+|+|.|+|.|.|..|.....+.|..
T Consensus       157 ~l~~~~~~~----~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          157 EISVDEKHD----FKD----GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EECCCCCCC----CSS----EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ECCCCCceE----cCC----CEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            987654321    111    3467999999999999999999999999988887754

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.95  E-value=5.3e-27  Score=189.74  Aligned_cols=212  Identities=14%  Similarity=0.157  Sum_probs=130.6

Q ss_pred             cCCCCCCCcccccccccccc--cccCCCCeeEecCCceEecCCCeEEEEEEEEecC-----CCeeEEeeCC--eeC----
Q psy1095          40 ISPLSSRTFTPYSLNSAIRT--RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQP-----APWTSWSKDG--KPA----  106 (325)
Q Consensus        40 v~~~d~G~Y~c~~~~~~~~~--~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-----~~~v~W~~~~--~~~----  106 (325)
                      ++++|+|.|+|.+.......  ..+..++.+...|....+.+|++++|.|.+.+.|     .+.+.|+|++  ..+    
T Consensus        11 v~~~dsg~Y~C~a~g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~   90 (254)
T 2c1o_A           11 VRPGTSVKLSCKASGYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLI   90 (254)
T ss_dssp             ---------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEE
T ss_pred             ecCCccEEEEEcCchhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEE
Confidence            89999999999997322211  1122467777888889999999999999998877     4899999743  211    


Q ss_pred             --------CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEe
Q psy1095         107 --------TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCC  177 (325)
Q Consensus       107 --------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~  177 (325)
                              ....++.+...+...+|.|.+++.+|+|.|+|.+.+..+.. .....+.|...   ..+|.+..........
T Consensus        91 ~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~  167 (254)
T 2c1o_A           91 YLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRA---DAAPTVSIFPPSSEQL  167 (254)
T ss_dssp             ETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCC---CBCCEEEEECCCHHHH
T ss_pred             EeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCC---CCCCeeEeecCChhhc
Confidence                    11246666655666789999999999999999998875432 22235566432   1246665544433344


Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec-CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD-SKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      .|+.++|.|.+.+.+++.+.+.|++++..+............. +..+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus       168 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          168 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            6889999999998655335799999998876541000000011 1122345789999999999999999999987653

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=3.5e-28  Score=202.30  Aligned_cols=214  Identities=15%  Similarity=0.171  Sum_probs=152.6

Q ss_pred             CCCCCCcccCCCCCCCcccccccccccc------cccCCCCe--eEecCCceEecCCCeEEEEEEE-EecCCCeeEEeeC
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRT------RRLTSSPR--FYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKD  102 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p~--~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~  102 (325)
                      ..+|.|.+++++|+|.|+|.+.+.....      ..+..+|.  +...+.......|+.+.|.|.+ .+.|.+.++|+++
T Consensus        73 ~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~  152 (308)
T 4fom_A           73 DATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGD  152 (308)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCC
T ss_pred             ceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEEC
Confidence            3578999999999999999986642211      22223333  3344555566778999999986 6789999999999


Q ss_pred             CeeCCCCCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCeeE--EEEEEEEEECCCcccCCCeeeecC-cCeeE
Q psy1095         103 GKPATPNARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGSV--EATARLEIMDPRAIISRPKVLNGL-ENLRC  176 (325)
Q Consensus       103 ~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~-~~~~v  176 (325)
                      +..+......  ....   ....|.|..+..+|.|.|+|.+.|..+..  ...+.|.|..+      |.+.... ....+
T Consensus       153 ~~~~~~~~~~--~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~------P~~~~~~~~~~~~  224 (308)
T 4fom_A          153 LGEMESTTTS--FPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYA------PEVSVTGYDGNWF  224 (308)
T ss_dssp             SSBCCEEEEE--CTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEE------EEECCBCCCSCEE
T ss_pred             Ccccccccce--eeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecC------CeeEEcccceeee
Confidence            8876532110  0011   12358999999999999999999976543  34445555443      3433332 33456


Q ss_pred             ecCCcEEEEEEEEecCCCCC-eeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         177 CDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      ..|+.+.|.|.+.|.|+  + .+.|++++..+......     .++      ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus       225 ~~g~~v~l~C~~~g~P~--p~~v~W~k~~~~~~~~~~~-----~~~------~~l~i~~v~~~d~G~Y~C~A~N~~G~~~  291 (308)
T 4fom_A          225 VGRKGVNLKCNADANPP--PFKSVWSRLDGQWPDGLLA-----SDN------TLHFVHPLTFNYSGVYICKVTNSLGQRS  291 (308)
T ss_dssp             TTCCSCEEECCEEEESC--EEEEECCBSSSCCCSSCBC-----STT------EEECCSCCCSCCCSEEEEEEEETTEEEE
T ss_pred             eccccEEEEEEEecCCC--CcEEEEEECCeECCCcEEE-----cCC------eEEEECCCChhhCEEEEEEEEeCCCcEE
Confidence            67899999999999987  5 69999998776543211     122      4677899999999999999999999999


Q ss_pred             eEEEEEEEeeC
Q psy1095         256 TSACLIVDVVK  266 (325)
Q Consensus       256 ~~~~l~v~~~~  266 (325)
                      ..+.|.|...|
T Consensus       292 ~~~~l~V~~~P  302 (308)
T 4fom_A          292 DQKVIYISDPP  302 (308)
T ss_dssp             EEEECCEECCC
T ss_pred             EEEEEEEEcCC
Confidence            88888885443

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.95  E-value=5.3e-27  Score=190.46  Aligned_cols=210  Identities=14%  Similarity=0.148  Sum_probs=157.4

Q ss_pred             eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCccccccccccc---ccccCCCCeeEecCCceEecCCCeEEEEEE
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIR---TRRLTSSPRFYAVPHNKICDLGDTVRFQCS   88 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~---~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~   88 (325)
                      .++|.+++..+..      ....|.|.+++.+|+|.|+|.+.+....   ...+..++ +...+....+.+|+.+.|.|.
T Consensus        33 ~~~W~~~g~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~-~~~~~~~~~~~~g~~v~l~C~  105 (262)
T 3rjd_A           33 STQWFLNGTATQT------STPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCH  105 (262)
T ss_dssp             CEEEEETTEECSC------CSSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEEECSS-EEEEESCSEEETTSCEEEEEE
T ss_pred             eEEEEECCEEeec------cCCeEEEecCCcccCeEEEEEEecCCccccEEEEEeccc-eEecCCCeEEecCCeEEEEEE
Confidence            5667666555432      3567899999999999999999765432   22333444 344555667889999999999


Q ss_pred             E-EecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCee
Q psy1095          89 V-TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV  167 (325)
Q Consensus        89 ~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~  167 (325)
                      + .+.|.+.+.|++++..+...      .  ....|.|.+++.+|+|.|+|.+.+..+.....+.|.|....   .+|.+
T Consensus       106 ~~~~~p~~~v~W~~~g~~~~~~------~--~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~---~~p~~  174 (262)
T 3rjd_A          106 AWKDKLVYNVLYYRNGKAFKFF------H--WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF---PAPVL  174 (262)
T ss_dssp             EGGGCCCEEEEEEETTEEEEEE------E--ECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS---CCCEE
T ss_pred             ccCCCCCceEEEEECCcccccc------C--CCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCC---CCCeE
Confidence            9 66788899999998876321      1  12359999999999999999999988877777888887641   23555


Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCC-C--CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPP-N--DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~-~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      ...+ ...+.+|+.+.|.|.+.+.|. +  ...+.|++++..+....              ....|.|.+++.+|+|.|+
T Consensus       175 ~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~  239 (262)
T 3rjd_A          175 NASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN--------------TSSEYQILTARREDSGLYW  239 (262)
T ss_dssp             EESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEE--------------SCCEEEESSCCGGGCEEEE
T ss_pred             eecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccC--------------CCceEEEEEechhhCeEEE
Confidence            5444 556889999999999998774 2  12478999998775221              1247999999999999999


Q ss_pred             EEEEeCCCcE
Q psy1095         245 CRVANELGEV  254 (325)
Q Consensus       245 C~~~~~~~~~  254 (325)
                      |.|.|..|..
T Consensus       240 C~a~n~~G~~  249 (262)
T 3rjd_A          240 CEAATEDGNV  249 (262)
T ss_dssp             EEEEETTSSC
T ss_pred             EEEEcccCce
Confidence            9999999864

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.95  E-value=7.1e-27  Score=198.94  Aligned_cols=214  Identities=15%  Similarity=0.187  Sum_probs=151.1

Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCC--------------CCCcEEEEe---cCCeEEEEEccCCCCCCeEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT--------------PNARVTIRE---KEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~--------------~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      +.+.+|+++.|.|.+.+.|.+.+.|+|++..+.              ...++.+..   ..+...|.|.+++.+|+|.|+
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   83 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence            468899999999999888999999999975311              112333221   223456999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEE
Q psy1095         138 IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV  217 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  217 (325)
                      |.+.+..+    .+.|.|...         ... ....+.+|+.+.|.|.+.+.|.  +.+.|++++..+..        
T Consensus        84 C~~~n~~~----~~~l~V~~~---------~~~-~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~--------  139 (363)
T 1wio_A           84 CEVEDQKE----EVQLLVFGL---------TAN-SDTHLLQGQSLTLTLESPPGSS--PSVQCRSPRGKNIQ--------  139 (363)
T ss_dssp             EEETTEEE----EEEEEEEEE---------EES-SCSSEESBSCEEEEEECCTTCC--CCEEEECSSSCEEE--------
T ss_pred             EEEEECCC----cEEEEEEeC---------CCC-CceEEecCCCEEEEEEcCCCCC--CeEEEEcCCCcccc--------
Confidence            99976532    455555431         111 1235789999999999988776  89999998754321        


Q ss_pred             EecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeC-------------------------------
Q psy1095         218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK-------------------------------  266 (325)
Q Consensus       218 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~-------------------------------  266 (325)
                       ..       ..|.|.+++.+|+|.|+|.|.|..+.....+.|.|...+                               
T Consensus       140 -~~-------~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p  211 (363)
T 1wio_A          140 -GG-------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSG  211 (363)
T ss_dssp             -ES-------SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEE
T ss_pred             -cc-------eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCCce
Confidence             12       489999999999999999999876665554455443221                               


Q ss_pred             -------CeecCC--------CCceEEEE----------eCCEEEEEEcCCCCCCCeEEEEEEECC--CeeEEeEEEEEE
Q psy1095         267 -------GKDLTS--------DGRLNIIT----------VGGTSVLTIEDITGDDSGKYQVHVSNQ--HGSDSCYASVAV  319 (325)
Q Consensus       267 -------~~~~~~--------~~~~~~~~----------~~~~~~l~i~~v~~~d~G~Y~C~a~n~--~g~~~~~~~l~V  319 (325)
                             +..+..        +++..+..          .++...|.|.++..+|+|.|+|.|.|.  .|..+..+.|.|
T Consensus       212 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V  291 (363)
T 1wio_A          212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV  291 (363)
T ss_dssp             EEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEE
T ss_pred             eEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEE
Confidence                   111111        11111111          112348999999999999999999999  999888888888


Q ss_pred             e
Q psy1095         320 E  320 (325)
Q Consensus       320 ~  320 (325)
                      .
T Consensus       292 ~  292 (363)
T 1wio_A          292 M  292 (363)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=195.03  Aligned_cols=216  Identities=15%  Similarity=0.165  Sum_probs=139.0

Q ss_pred             CCCCCCCcccCCCCCCCccccccccccc----------ccccCC---CCeeEecCCceEecCCCeEEEEEEEEecCCC--
Q psy1095          31 TPRSTPPRSISPLSSRTFTPYSLNSAIR----------TRRLTS---SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP--   95 (325)
Q Consensus        31 ~~~~l~i~~v~~~d~G~Y~c~~~~~~~~----------~~~~~~---~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~--   95 (325)
                      ...+|.|.+++++|+|.|+|.+.+....          ...+..   +|.+. .| ...+.+|+.+.|.|.+.+.|.+  
T Consensus        72 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~  149 (327)
T 2wng_A           72 MDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-GP-AARATPQHTVSFTCESHGFSPRDI  149 (327)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCC
T ss_pred             ceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee-cc-ccccCCCCEEEEEEEEeCccCCCc
Confidence            3457899999999999999999876432          122222   23332 33 3568899999999999987765  


Q ss_pred             eeEEeeCCeeCCCCCcEEEEe-cCC----eEEEEEccCCCCCCeEEEEEEEeCCee---EEEEEEEEEECCCcccCCCee
Q psy1095          96 WTSWSKDGKPATPNARVTIRE-KED----LRFLEISEVTLEDAGLYTIKVENNYGS---VEATARLEIMDPRAIISRPKV  167 (325)
Q Consensus        96 ~v~W~~~~~~~~~~~~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~p~~  167 (325)
                      .+.|++++..+.......... .++    ...|.|.....+|.|.|+|.+.|..+.   ......+.+..    ..+|.+
T Consensus       150 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v----~~~P~i  225 (327)
T 2wng_A          150 TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETI----RVPPTL  225 (327)
T ss_dssp             EEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTB----CBCCEE
T ss_pred             EEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecccc----CCCCEE
Confidence            899999999886543221111 111    124777777777789999999987654   22333332111    234555


Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      ...+..  +.+|+.+.|.|.+.+.+++...+.|+++|..+......... ......+...+.|.|..+..+|+|.|+|.|
T Consensus       226 ~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~-~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a  302 (327)
T 2wng_A          226 EVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVT-ENKDGTYNWMSWLLVNVSAHRDDVKLTCQV  302 (327)
T ss_dssp             EEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCE-ECTTSCEEEEEEEEC-------CCEEEEEE
T ss_pred             EEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceE-ECCCCcEEEEEEEEEccccccCCCEEEEEE
Confidence            544333  67899999999999965532389999999988643222222 111222334467999999999999999999


Q ss_pred             EeCCCcEE
Q psy1095         248 ANELGEVV  255 (325)
Q Consensus       248 ~~~~~~~~  255 (325)
                      .|..+...
T Consensus       303 ~N~~~~~~  310 (327)
T 2wng_A          303 EHDGQPAV  310 (327)
T ss_dssp             EETTCCCE
T ss_pred             EeCCCCCc
Confidence            99987643

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.94  E-value=1.4e-26  Score=194.53  Aligned_cols=214  Identities=13%  Similarity=0.176  Sum_probs=155.6

Q ss_pred             CCCCCCCcccCCCCCCCcccccccc-cc-----cccccCCCCeeE--ecCCceEecCC---CeEEEEEE-EEecCCCeeE
Q psy1095          31 TPRSTPPRSISPLSSRTFTPYSLNS-AI-----RTRRLTSSPRFY--AVPHNKICDLG---DTVRFQCS-VTGQPAPWTS   98 (325)
Q Consensus        31 ~~~~l~i~~v~~~d~G~Y~c~~~~~-~~-----~~~~~~~~p~~~--~~~~~~~v~~g---~~v~l~C~-~~~~p~~~v~   98 (325)
                      ...+|.|.+++.+|+|.|+|.+... .+     ....+..+|.+.  ..+....+.+|   +.+.|.|. ..+.|.+.+.
T Consensus        90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~  169 (331)
T 3u83_A           90 TDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS  169 (331)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred             CCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence            3567999999999999999984322 21     123344566653  34556678888   78999998 7889999999


Q ss_pred             EeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeee-cCcC
Q psy1095          99 WSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN-GLEN  173 (325)
Q Consensus        99 W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~-~~~~  173 (325)
                      |++++.....  .......++    ...|.|.++..+|+|.|+|.+.|..+.....+.|.|..+      |.+.. ....
T Consensus       170 W~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~------P~~~~~~~~~  241 (331)
T 3u83_A          170 WETRLKGEAE--YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE------PEVTIEGFDG  241 (331)
T ss_dssp             EEESSCCEEE--EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEE------EEEEEECCCS
T ss_pred             EEcCCCCccc--cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecC------CeEEEecCCC
Confidence            9995322110  000111111    135889999999999999999999888888888888765      33332 2234


Q ss_pred             eeEecCCcEEEEEEEEecCCCCCe-eEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC-CCCCCCCeEEEEEEEeCC
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHD-ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP-HVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~~~~~~  251 (325)
                      ..+..|+.+.|.|.+.+.|.  +. +.|++++..+.....     ...       ..|.|. +++.+|+|.|+|.|.|..
T Consensus       242 ~~~~~g~~~~l~C~~~g~p~--p~~i~W~~~~~~~~~~~~-----~~~-------~~L~i~~~v~~~d~G~Y~C~a~N~~  307 (331)
T 3u83_A          242 NWYLQRMDVKLTCKADANPP--ATEYHWTTLNGSLPKGVE-----AQN-------RTLFFKGPINYSLAGTYICEATNPI  307 (331)
T ss_dssp             CCBTTCCCEEEEEEEEEESC--CCEEEEEETTBSCCTTEE-----EET-------TEEEECSCCCGGGCEEEEEEEEETT
T ss_pred             ceEeCCCeEEEEEeCcCCCC--CCEEEEEECCCcccccce-----ecC-------cEEEEeCCCccccCeEEEEEEEecc
Confidence            45778999999999999988  66 999999887754311     122       379999 999999999999999999


Q ss_pred             CcEEeEEEEEEEeeC
Q psy1095         252 GEVVTSACLIVDVVK  266 (325)
Q Consensus       252 ~~~~~~~~l~v~~~~  266 (325)
                      |.....+.|.|...+
T Consensus       308 G~~~~~~~l~V~~~~  322 (331)
T 3u83_A          308 GTRSGQVEVNITEAA  322 (331)
T ss_dssp             EEEEEEEEECCBC--
T ss_pred             ccceEEEEEEEeccc
Confidence            999888888874443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.94  E-value=2.2e-26  Score=200.76  Aligned_cols=183  Identities=14%  Similarity=0.175  Sum_probs=127.5

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCC----CeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPA----PWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEV  128 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~----~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~  128 (325)
                      .+...|....+.+|++++|.|.+.+.+.    +.+.|+|++  ..+            ....++.....+...+|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPV   82 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCC
Confidence            3566688888999999999999987775    489999963  221            1134666655566778999999


Q ss_pred             CCCCCeEEEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCC-eeEEeeCCEE
Q psy1095         129 TLEDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRL  206 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~-~~~W~~~~~~  206 (325)
                      +.+|+|.|+|.+.+..+.. .....|.|...   ..+|.+...........|+.+.|.|.+.+.++. + .+.|++++..
T Consensus        83 ~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~-~~~v~W~k~g~~  158 (438)
T 1qgc_4           83 EADDVATYYCQQSNEVPLTFGAGTKLDLKRA---DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK-DINVKWKIDGSE  158 (438)
T ss_dssp             CGGGCEEEEEEECSSTTCCBCCCEEEEECCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS-CEEEEEEETTEE
T ss_pred             cCcCCeeEEEEEecCCCccccCceeEEecCC---CCCCEEEecCCChhhccCCceEEEEEEccccCC-CcEEEEEECCEE
Confidence            9999999999998876532 23455666432   124665554433334468899999999884432 5 8999999988


Q ss_pred             eccCCCCceEEEe-cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         207 IKLDSDMKPEVQV-DSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       207 ~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      +............ .+..+...+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  206 (438)
T 1qgc_4          159 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  206 (438)
T ss_dssp             ECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             cCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccC
Confidence            7654111000001 1112223568999999999999999999998776

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.94  E-value=1.8e-25  Score=181.91  Aligned_cols=216  Identities=19%  Similarity=0.231  Sum_probs=150.7

Q ss_pred             eEecCCCeEEEEEEEEe-cCCC--eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccC---CCCCCe--EEEEEEEeCCee
Q psy1095          75 KICDLGDTVRFQCSVTG-QPAP--WTSWSKDGKPATPNARVTIREKEDLRFLEISEV---TLEDAG--LYTIKVENNYGS  146 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G--~Y~C~~~~~~~~  146 (325)
                      ..+.+|++++|.|.+.+ .|.+  .++|++++..+..    .+...++  .+.+..+   +..|+|  .|+|.+.|..+.
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~   86 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQS   86 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcceEEEEEecCCCC
Confidence            36889999999999998 7776  9999999998865    2222232  3444444   777877  499999999888


Q ss_pred             EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCccee
Q psy1095         147 VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV  226 (325)
Q Consensus       147 ~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (325)
                      ....+.|.|...+    +|.+..  ....+.+|+.+.|.|.+.  |.  +.+.|  +|..+....              .
T Consensus        87 ~~~~~~l~V~~~p----~p~~~~--~~~~v~~G~~v~l~C~~~--p~--~~i~W--~g~~~~~~~--------------~  140 (265)
T 2oz4_A           87 QETLQTVTIYSFP----APNVIL--TKPEVSEGTEVTVKCEAH--PR--AKVTL--NGVPAQPLG--------------P  140 (265)
T ss_dssp             EEEEEEEEEECCC----CCEEEE--SCSEEETTCEEEEEEECC--TT--SEEEE--SSCSSSCCS--------------S
T ss_pred             cEEEEEEEEeCCC----Cceeec--CCceecCCCcEEEEEEcc--CC--CEEEE--CCEEccCCC--------------C
Confidence            8888889987652    244442  355688899999999997  55  89999  666653211              1


Q ss_pred             EEEEEeCCCCCCCCeEEEEEEEeCC-CcEE---eEEEEEEEeeCCeecC---------CCCce-------------EEEE
Q psy1095         227 IARLKIPHVYPEDEGEFTCRVANEL-GEVV---TSACLIVDVVKGKDLT---------SDGRL-------------NIIT  280 (325)
Q Consensus       227 ~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~---~~~~l~v~~~~~~~~~---------~~~~~-------------~~~~  280 (325)
                      ...|.|..+..+|.|.|+|.|.|.. |...   ..+.|.|...+...+.         .+..+             ..+.
T Consensus       141 ~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~  220 (265)
T 2oz4_A          141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCL  220 (265)
T ss_dssp             EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred             cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEE
Confidence            2568899999999999999998644 6554   5566776543322111         00000             1122


Q ss_pred             eCCEEE---EEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095         281 VGGTSV---LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR  322 (325)
Q Consensus       281 ~~~~~~---l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  322 (325)
                      .++...   ..+..++.+|+|.|+|.|.|..|..+..+.|.|.++
T Consensus       221 ~~~~~~~~~g~~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p  265 (265)
T 2oz4_A          221 KDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  265 (265)
T ss_dssp             ETTTEECCTTSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ECCcccCCCCcEEEeehhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence            222100   112347889999999999999999999999999763

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.94  E-value=1.7e-27  Score=208.97  Aligned_cols=219  Identities=14%  Similarity=0.208  Sum_probs=135.8

Q ss_pred             CCCCCcccCCCCCCCcccccccccc---------------c--ccccC----CCCeeEecCCceEecCCCeEEEEEEEEe
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI---------------R--TRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTG   91 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~---------------~--~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~   91 (325)
                      .+|.|.+++++|+|.|+|.+.+..+               .  ...+.    .+|.+...+....+.+|+.+.|.|.+.+
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g  158 (457)
T 1hzh_H           79 AYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD  158 (457)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEES
T ss_pred             EEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeE
Confidence            3689999999999999999987642               0  12222    2566655554445789999999999988


Q ss_pred             c-CC-CeeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCC------
Q psy1095          92 Q-PA-PWTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR------  159 (325)
Q Consensus        92 ~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~------  159 (325)
                      . |. +.+.|++++..+...........++    ...|.|.++..+| |.|+|.+.|..+.......+.+...+      
T Consensus       159 ~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~  237 (457)
T 1hzh_H          159 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCP  237 (457)
T ss_dssp             BBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCC
T ss_pred             EeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccC
Confidence            6 64 7999999986543111111111112    1368999999999 99999999977654444333332211      


Q ss_pred             -----cccCCCee-eecCcCee-EecCCcEEEEEEEEecCCC--CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEE
Q psy1095         160 -----AIISRPKV-LNGLENLR-CCDGDSVTFECQVQVVPPN--DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL  230 (325)
Q Consensus       160 -----~~~~~p~~-~~~~~~~~-v~~g~~v~l~C~~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (325)
                           ....+|.+ ...+.... +.+|+.+.|.|.+.+.+++  .+.+.|++++..+...... ......+......+.|
T Consensus       238 ~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~-~~~~~~~g~~~~~~~l  316 (457)
T 1hzh_H          238 PCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK-PREEQYNSTYRVVSVL  316 (457)
T ss_dssp             SCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEE-EEEECTTSCEEEEEEE
T ss_pred             CCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccc-cceecCCCcEEEEEEE
Confidence                 01123454 22222222 5679999999999987652  1389999999887532211 1111112112223344


Q ss_pred             EeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         231 KIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       231 ~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      .|.....+|+|.|+|.|.|..+.
T Consensus       317 ~i~~~d~~d~G~Y~C~a~n~~~~  339 (457)
T 1hzh_H          317 TVLHQDWLNGKEYKCKVSNKALP  339 (457)
T ss_dssp             CCCHHHHHHTCCEEEEEECTTSS
T ss_pred             EECHHHccCCCcEEEEEeCCCCC
Confidence            44333334499999999976543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.94  E-value=2e-26  Score=179.12  Aligned_cols=171  Identities=17%  Similarity=0.185  Sum_probs=125.9

Q ss_pred             ceEecCCCeEEEEEE---EEecCCCeeEEeeCCeeCCC-----------------CCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          74 NKICDLGDTVRFQCS---VTGQPAPWTSWSKDGKPATP-----------------NARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~---~~~~p~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      ++++..|++++|.|.   +.+.|.+.|+|+|++..+..                 ..++.+....+...|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            456889999999996   45678999999997643211                 1234444456678899999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC--C
Q psy1095         134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD--S  211 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~--~  211 (325)
                      |.|+|.+.|..+.....+.|.|..+      |.+...+....+.+|+.+.|.|.+.|.|.  |.+.|++++..+...  .
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p------~~~~~~~~~~~v~~g~~~~l~C~~~G~P~--P~v~W~~~~~~~~~~~~~  153 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKP------LTLSVHSERSQFPDFSVLTVTCTVNAFPH--PHVQWLMPEGVEPAPTAA  153 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEE------EEEEEEEEECCSSCSCCEEEEEEEEEESC--CEEEECCC----------
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCC------ceeeecceeEEEcCCCEEEEEEEcCCCCC--CEEEEEECCeeecCcccc
Confidence            9999999999998888888888754      45555555566788999999999999998  899999876654322  1


Q ss_pred             CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095         212 DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  256 (325)
                      ..+.....++    ....+.|.+++.+|+|.|+|.|.|..|+...
T Consensus       154 ~~r~~~~~~g----~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          154 NGGVMKEKDG----SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             --CCEECTTS----CEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             cceEEEeCCC----CEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            1122222333    3456777899999999999999999998764

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.94  E-value=3.1e-25  Score=170.04  Aligned_cols=175  Identities=22%  Similarity=0.365  Sum_probs=137.8

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCC--eEEEEEccCCCCCCeEEEEEEEe
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED--LRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      +|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+....+........  ...|.|.+++.+|+|.|+|.+.+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            5778888888899999999999999998999999999999987765555444332  46799999999999999999988


Q ss_pred             CCee-EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCC-eeEEeeCCEEeccCCCCceEEEec
Q psy1095         143 NYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVD  220 (325)
Q Consensus       143 ~~~~-~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~  220 (325)
                      ..+. ....+.|.|..+      |.+...+....+.+|+.+.|.|.+.+.|.  + .+.|++++..+.....       .
T Consensus        82 ~~~~~~~~~~~l~V~~~------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~v~W~~~~~~~~~~~~-------~  146 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGV------PFFTVEPKDLAVPPNAPFQLSCEAVGPPE--PVTIVWWRGTTKIGGPAP-------S  146 (182)
T ss_dssp             CTTCEECCCEEEEEECS------CEEEECCCCEEECTTCCEEEEEEEECSSS--CCEEEEEETTEECSCSEE-------S
T ss_pred             CCCcEEEEEEEEEEecC------CeEEecCcceEecCCCEEEEEeEecCCCC--CCEEEEEcCCeECCCCCC-------C
Confidence            7654 345677888765      56666666778899999999999999887  6 9999999988754321       1


Q ss_pred             CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe-EEEEEE
Q psy1095         221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV  262 (325)
Q Consensus       221 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v  262 (325)
                            ...|.|.++  +|+|.|+|.|.|..|.... .+.|.|
T Consensus       147 ------~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          147 ------PSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ------SEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ------ceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence                  258999988  5899999999999988753 666665

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.9e-25  Score=172.15  Aligned_cols=181  Identities=25%  Similarity=0.404  Sum_probs=136.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC--CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP--NARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|++++..+..  ..++.....   ..|.|.+++..|+|.|+|.+.
T Consensus         1 s~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~   77 (189)
T 2v5t_A            1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN---NNLQILNINKSDEGIYRCEGR   77 (189)
T ss_dssp             CCCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTT---SCEEETTCCGGGCEEEEEEEE
T ss_pred             CCceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecC---CCEEEeeCCHhHCcEEEEEEE
Confidence            368899999999999999999999999989999999999887753  334444332   359999999999999999999


Q ss_pred             eCCeeE--EEEEEEEEECCCcccCCCeeeecCc--CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEE
Q psy1095         142 NNYGSV--EATARLEIMDPRAIISRPKVLNGLE--NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV  217 (325)
Q Consensus       142 ~~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~--~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  217 (325)
                      +..+..  ...+.+.+..+      |.+.....  ...+..|+.+.|.|.+.+.|.  +.+.|++++..+......... 
T Consensus        78 ~~~~~~~~~~~~~l~v~~~------p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~-  148 (189)
T 2v5t_A           78 VEARGEIDFRDIIVIVNVP------PAISMPQKSFNATAERGEEMTFSCRASGSPE--PAISWFRNGKLIEENEKYILK-  148 (189)
T ss_dssp             ETTTTEEEEEEEEEEEEEE------EEEECSCCEEEEETTSCCCEEEECEEEEESC--CEEEEEETTEECCCSSSEEEE-
T ss_pred             EcCCCceEEEEEEEEecCC------CCcccccccccccccCCCcEEEEEEEccCCC--CeEEEEECCEECcCCCcEEEe-
Confidence            876432  34455555544      23322222  234567999999999999887  899999999988755432211 


Q ss_pred             EecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       218 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                       ..+      ..|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       149 -~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          149 -GSN------TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             -TTT------TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -cCC------CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence             222      479999999999999999999999999988888875

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.94  E-value=2.2e-26  Score=192.16  Aligned_cols=227  Identities=15%  Similarity=0.119  Sum_probs=148.6

Q ss_pred             eeeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCcccccccccc----------ccccc---CCCCeeEecCCceEe
Q psy1095          11 LSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAI----------RTRRL---TSSPRFYAVPHNKIC   77 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~----------~~~~~---~~~p~~~~~~~~~~v   77 (325)
                      ....|.+++...............|.|.+++.+|+|.|+|.+.+...          ....+   ..+|.+...|... +
T Consensus        52 ~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v  130 (316)
T 3vh8_G           52 NNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-V  130 (316)
T ss_dssp             CSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-E
T ss_pred             ceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-c
Confidence            35668777766443222233456889999999999999998764211          11122   1456777666655 8


Q ss_pred             cCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEE-EEecCCeEEEEEccCCCCCCeEEEEEEEeCCee-----EEEEE
Q psy1095          78 DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-IREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-----VEATA  151 (325)
Q Consensus        78 ~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~  151 (325)
                      .+|++++|.|.+. .+.+.+.|++++..+....... .........|.|.+++.+|+|.|+|.+.|..+.     ....+
T Consensus       131 ~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~  209 (316)
T 3vh8_G          131 KSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPL  209 (316)
T ss_dssp             ETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCE
T ss_pred             CCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCE
Confidence            8999999999995 4567899999998775322111 111123457999999999999999999987653     13445


Q ss_pred             EEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEE
Q psy1095         152 RLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       152 ~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (325)
                      .|.|...   ..+|.+...+. ..+.+|+.++|.|.+. .+.  +.+.|++++..+......     ...........|.
T Consensus       210 ~l~V~~~---~~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~--~~~~W~k~g~~~~~~~~~-----~~~~~~~~~~~L~  277 (316)
T 3vh8_G          210 DIVVTGP---YEKPSLSAQPG-PKVQAGESVTLSCSSR-SSY--DMYHLSREGGAHERRLPA-----VRKVNRTFQADFP  277 (316)
T ss_dssp             EEEEECS---SCCCEEEEESC-SCCCTTSCCEEEEEES-SCC--SEEEEEETTSSCCEEEEC-----EECTTSCEEEEEE
T ss_pred             EEEecCC---CCCCeEEeCCC-CeecCCCcEEEEEECC-CCC--cEEEEEECCCcCCCceec-----eeccCCceeEEEE
Confidence            6666653   23455555443 3678899999999996 344  789999998765421110     0000111346899


Q ss_pred             eCCCCCCCCeEEEEEEEeCCCc
Q psy1095         232 IPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       232 i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      |.+++  |+|.|+|.+.|..+.
T Consensus       278 i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          278 LGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             CC-------CEEEEEEEBTTBT
T ss_pred             cCCcC--CCEEEEEEeecCCCc
Confidence            99999  999999999997653

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.94  E-value=8.2e-26  Score=186.24  Aligned_cols=238  Identities=13%  Similarity=0.092  Sum_probs=154.9

Q ss_pred             eecccCCCCcccCCCCCCC---CCCCCCcccCCCCCCCcccccccccccc--------cccCCCCe--eEecCCc--eEe
Q psy1095          13 VKLTRPSGLMSGHSTPRST---PRSTPPRSISPLSSRTFTPYSLNSAIRT--------RRLTSSPR--FYAVPHN--KIC   77 (325)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~---~~~l~i~~v~~~d~G~Y~c~~~~~~~~~--------~~~~~~p~--~~~~~~~--~~v   77 (325)
                      ++|.+++..+.........   ..+|.|.+++.+|+|.|+|.+.+..+..        +.+..|+.  +...+..  ..+
T Consensus        28 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v  107 (289)
T 3mjg_X           28 VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFL  107 (289)
T ss_dssp             CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEE
T ss_pred             EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEe
Confidence            5687777765332211111   2578899999999999999998866431        11221222  1111111  568


Q ss_pred             cCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE-EEEEEEEE
Q psy1095          78 DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIM  156 (325)
Q Consensus        78 ~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~  156 (325)
                      .+|+.+.|.|.+. .|.+.++|++.+........+  .  .... +.    ...|+|.|+|.+.+..+... ....+.|.
T Consensus       108 ~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~--~--~~~~-~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~  177 (289)
T 3mjg_X          108 TEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPY--D--HQRG-FS----GIFEDRSYICKTTIGDREVDSDAYYVYRL  177 (289)
T ss_dssp             SSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCE--E--TTTE-EE----ECCCSSEEEEEEEETTEEEECCCEEEEEC
T ss_pred             ecCCeEEEEeEcC-CCCceEEEEeCCCCCccceee--c--CCcC-ee----eeccCcEEEEEEEeCCceeeeeeEEEEec
Confidence            8999999999998 677889999865322211111  1  1111 11    35799999999997766443 33456665


Q ss_pred             CCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         157 DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       157 ~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ..    .+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++............ ............|.|.+++
T Consensus       178 ~~----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~--p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~I~~v~  250 (289)
T 3mjg_X          178 QV----SSINVSVNAVQTVVRQGENITLMCIVIGNEV--VNFEWTYPRKESGRLVEPVTD-FLLDMPYHIRSILHIPSAE  250 (289)
T ss_dssp             CC----CCCCCEEEESCSEEETTSCEEEEEEEESCSS--BEEEEECTTSSSSCCCCCEEE-ESCTTTTEEEEEEEESSCC
T ss_pred             CC----CCCCcEEeCCcceeEcCCCEEEEEEECCCCC--cceEEEcCCccCCCccccccc-ccCCcceEEEEEEEEcccC
Confidence            42    2355555555677899999999999999887  899999877644322211111 1111122355799999999


Q ss_pred             CCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC
Q psy1095         237 PEDEGEFTCRVANELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~  267 (325)
                      .+|+|.|+|.|.|..|....++.|.|...+.
T Consensus       251 ~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          251 LEDSGTYTCNVTESVNDHQDEKAINITVVES  281 (289)
T ss_dssp             SSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred             hhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence            9999999999999999999999999965543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.94  E-value=9.6e-28  Score=202.39  Aligned_cols=248  Identities=17%  Similarity=0.210  Sum_probs=172.1

Q ss_pred             eeeecccCCCCc--ccCC--CCCCCCCCCCCcccCCCCCCCcccccccccccc-----cccCCCCeeE--ecCCceEecC
Q psy1095          11 LSVKLTRPSGLM--SGHS--TPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSSPRFY--AVPHNKICDL   79 (325)
Q Consensus        11 ~~~~~~~~~~~~--~~~~--~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~p~~~--~~~~~~~v~~   79 (325)
                      ..+.|.+++...  ....  .......+|.|.+++.+|+|.|+|.+.+..+..     +.+..+|...  ....+..+.+
T Consensus        55 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~  134 (339)
T 3o4o_C           55 INLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTL  134 (339)
T ss_dssp             CBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEET
T ss_pred             ceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEEC
Confidence            467788777652  2221  111234578899999999999999998765422     2222333211  1222346889


Q ss_pred             CCeEEEEEE-----EEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe----eEEE
Q psy1095          80 GDTVRFQCS-----VTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG----SVEA  149 (325)
Q Consensus        80 g~~v~l~C~-----~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~  149 (325)
                      |+.+.|.|.     +.+.|.+.+.|++++..+... .++...  .+...|.|.+++.+|+|.|+|.+.|..+    ....
T Consensus       135 g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~  212 (339)
T 3o4o_C          135 STSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV--RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITR  212 (339)
T ss_dssp             TSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEEC--TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEE
T ss_pred             CCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEc--CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEE
Confidence            999999999     788899999999999988765 344333  2234799999999999999999998776    4566


Q ss_pred             EEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE---EecCCCCCeeEEeeCCEEeccCCCCce-E-----EEec
Q psy1095         150 TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV---QVVPPNDHDISWFRNNRLIKLDSDMKP-E-----VQVD  220 (325)
Q Consensus       150 ~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~---~~~~~~~~~~~W~~~~~~~~~~~~~~~-~-----~~~~  220 (325)
                      .+.|.|...+. ..+|.+...+....+..|+.+.|.|.+   .+.|.. +.+.|++++..+........ .     ....
T Consensus       213 ~~~l~V~~~~~-~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~  290 (339)
T 3o4o_C          213 SIELRIKKKKE-ETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLT-TMLWWTANDTHIESAYPGGRVTEGPRQEYSE  290 (339)
T ss_dssp             EEEEEEECCCC-CCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSS-CEEEEESSSSCSSSSSCSSSCEECCCEECCC
T ss_pred             EEEEEEEcCCC-CCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCC-ceEEEEECCeecccccccccceecceEEecc
Confidence            77888876432 134666666666678899999999999   787732 89999999877643211000 0     0011


Q ss_pred             CCcceeEEEEEeCCCCCCCC-eEEEEEEEeCCCcEEeEEEEEE
Q psy1095         221 SKENLVIARLKIPHVYPEDE-GEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       221 ~~~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      .......+.|.|.+++.+|+ |.|+|.|.|..|.....+.+.+
T Consensus       291 ~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          291 NNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             SSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             cCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence            11122344799999999997 9999999999998877665543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.94  E-value=8.7e-26  Score=186.09  Aligned_cols=231  Identities=14%  Similarity=0.159  Sum_probs=143.2

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCC-eEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      |.|...+....+.+|+++.|.|.+.+.    ++|++++..+.  .+......+. ..+|.|.+++.+|+|.|+|.+.|..
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   74 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSR   74 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC--
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccC
Confidence            445555556778999999999998763    99999998773  1222222221 3679999999999999999998877


Q ss_pred             ee---EEEEEEEEEECCCcccCCCeeeecCc--CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEe
Q psy1095         145 GS---VEATARLEIMDPRAIISRPKVLNGLE--NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV  219 (325)
Q Consensus       145 ~~---~~~~~~l~v~~~~~~~~~p~~~~~~~--~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  219 (325)
                      |.   ....+.+.|..+.    .+.+.....  ...+.+|+.+.|.|.+. .|.  +.+.|++.+.........    ..
T Consensus        75 g~~~~~~~~~~v~v~~p~----~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~--~~v~w~~~~~~~~~~~~~----~~  143 (289)
T 3mjg_X           75 GLETDERKRLYIFVPDPT----VGFLPNDAEELFIFLTEITEITIPCRVT-DPQ--LVVTLHEKKGDVALPVPY----DH  143 (289)
T ss_dssp             ----CCCEEEEEECCCTT----CCBCCCCHHHHEEEESSCCCEEECCCBS-CTT--SCEEEEESSCCSCCCCCE----ET
T ss_pred             CCCcCcEEeEEEEEECCC----cCcccCCCCcceEEeecCCeEEEEeEcC-CCC--ceEEEEeCCCCCccceee----cC
Confidence            64   2234444443221    122111111  15678899999999998 555  678888765322211110    01


Q ss_pred             cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe-EEEEEEEeeCCeecC---------CC------------CceE
Q psy1095         220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDVVKGKDLT---------SD------------GRLN  277 (325)
Q Consensus       220 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~---------~~------------~~~~  277 (325)
                      ..      ..+     ...|+|.|+|.|.|..+.... ...|.+.....+.+.         .+            ....
T Consensus       144 ~~------~~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~  212 (289)
T 3mjg_X          144 QR------GFS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVN  212 (289)
T ss_dssp             TT------EEE-----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBE
T ss_pred             Cc------Cee-----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcc
Confidence            11      111     257999999999987655433 233443221111000         00            0001


Q ss_pred             E-EE---------------------eCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         278 I-IT---------------------VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       278 ~-~~---------------------~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                      + +.                     ......|.|.++..+|+|.|+|.|.|..|....++.|.|.+.|.
T Consensus       213 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          213 FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES  281 (289)
T ss_dssp             EEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred             eEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence            1 11                     01235899999999999999999999999999999999998764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.94  E-value=3.6e-25  Score=173.86  Aligned_cols=178  Identities=21%  Similarity=0.300  Sum_probs=139.6

Q ss_pred             CCCeEEEEEEEEec-CCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095          79 LGDTVRFQCSVTGQ-PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD  157 (325)
Q Consensus        79 ~g~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  157 (325)
                      .++.+.|.|.+.+. |.+.++|++++..+....++.+...+....|.|.+++.+|+|.|+|.+.+..+.....+.|.|..
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~   95 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA   95 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHH
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEee
Confidence            57788888988774 58899999999999888888887777778899999999999999999999888776666665432


Q ss_pred             CC--------------cccCCCeee-ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCC
Q psy1095         158 PR--------------AIISRPKVL-NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       158 ~~--------------~~~~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  222 (325)
                      ..              .....|.+. ..+....+..|+.+.|.|.+.+.|.  +.+.|++++..+........... .+ 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~v~W~~~~~~~~~~~~~~~~~~-~~-  171 (212)
T 2r15_A           96 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP--PEVSWLKNEKALAQTDHCNLKFE-AG-  171 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSC--CEEEEEETTEEECCCSSEEEEEE-TT-
T ss_pred             ccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCC--ceEEEEECCeECccCCCEEEEEc-CC-
Confidence            00              000123333 3344567889999999999999888  88999999999876655433311 12 


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                         ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       172 ---~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          172 ---RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             ---TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ---CEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence               24689999999999999999999999998888888874

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.93  E-value=2.4e-25  Score=177.15  Aligned_cols=200  Identities=27%  Similarity=0.395  Sum_probs=147.9

Q ss_pred             CCCeeEecC----CceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEE-EecCCeEEEEEccCCCCCCeEEEE
Q psy1095          64 SSPRFYAVP----HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI-REKEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        64 ~~p~~~~~~----~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      .+|.+...+    ....+.+|+++.|.|.+.+.|.+.+.|++++..+....++.. ........|.|.+++..|+|.|+|
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   93 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   93 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence            466766555    677799999999999999999999999999998865432210 111223479999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEECCCcccCCCeeee-cCcCeeEecCCcEEEEEEEEecCCCCCeeEEee----CCEEeccCCCC
Q psy1095         139 KVENNYGSVEATARLEIMDPRAIISRPKVLN-GLENLRCCDGDSVTFECQVQVVPPNDHDISWFR----NNRLIKLDSDM  213 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~----~~~~~~~~~~~  213 (325)
                      .+.+..+.......|.|...+.  .+|.+.. .+....+..|+.+.|.|.+.+.|.  +.+.|++    ++..+......
T Consensus        94 ~~~n~~~~~~~~~~l~V~~~~~--~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~~~~~g~~~~~~~~~  169 (231)
T 3ojm_B           94 VVENEYGSINHTYHLDVVERSR--HRPILQAGLPANASTVVGGDVEFVCKVYSDAQ--PHIQWIKHVEKNGSKYGPDGLP  169 (231)
T ss_dssp             EEEETTEEEEEEEEEEEECCCC--CCCEECTTCSCCEEEETTCCEEEECCEECSSC--CEEEEEEECCBTTBSBCTTSCB
T ss_pred             EEecccCcccccEEEEEEcCCC--CCCceeeccCCceEEEeCCcEEEEEEEecCCC--CEEEEEECCCCCCccccCCCcc
Confidence            9999988888888888876432  1233322 234567889999999999999888  8999999    77666544332


Q ss_pred             ceEEEe-cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC
Q psy1095         214 KPEVQV-DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       214 ~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~  267 (325)
                      ...... ..........|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+.
T Consensus       170 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  224 (231)
T 3ojm_B          170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ  224 (231)
T ss_dssp             CEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-
T ss_pred             eEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCC
Confidence            221111 111111224799999999999999999999999998888888865544

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.93  E-value=2.8e-25  Score=175.23  Aligned_cols=186  Identities=23%  Similarity=0.424  Sum_probs=139.4

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC--cEEEEecCCeE--EEEEccCCCCCCeEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLR--FLEISEVTLEDAGLYTI  138 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C  138 (325)
                      ..+|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+....  .......++..  .|.|.+++.+|+|.|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            468999999999999999999999999999999999999999886542  22222222211  23678899999999999


Q ss_pred             EEEeCCeeEE-EEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCCCC---
Q psy1095         139 KVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDM---  213 (325)
Q Consensus       139 ~~~~~~~~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~---  213 (325)
                      .+.+..+... ....|.|...     +|.+...+....+..|+.+.|.|.+ .+.|.  +.+.|++++..+......   
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~--~~v~W~~~g~~~~~~~~~~~~  159 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAVL-----RDDFRVEPKDTRVAKGETALLECGPPKGIPE--PTLIWIKDGVPLDDLKAMSFG  159 (217)
T ss_dssp             EEEETTEEEECCCEEEEECEE-----CCSCSBCCCCEEECTTSCEEECCBCCCEESC--CEEEEEETTEEECCCCCC---
T ss_pred             EEecCCCccccccceEEEEEe-----CCCcEECCCccEEcCCCeEEEEEECCCCCCC--CeEEEEECCcCCCcccccccc
Confidence            9999887553 3455555432     2333444456678899999999998 78888  899999999988743211   


Q ss_pred             ---ceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         214 ---KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       214 ---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                         .......       ..|.|.+++.+|+|.|+|.|.|..|....+..+.+
T Consensus       160 ~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv  204 (217)
T 2vr9_A          160 ASSRVRIVDG-------GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI  204 (217)
T ss_dssp             CCCSEEEETT-------TEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             cCCcEEecCC-------CcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence               1111122       37999999999999999999999998877665555

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.93  E-value=1.2e-27  Score=208.47  Aligned_cols=219  Identities=15%  Similarity=0.170  Sum_probs=138.2

Q ss_pred             CCCCCcccCCCCCCCcccccccccc-----cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeEEee
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI-----RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTSWSK  101 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~-----~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W~~  101 (325)
                      .+|.|.+++.+|+|.|.|.+.+...     ..+.+.    .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++
T Consensus        78 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k  157 (434)
T 1igy_B           78 ANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  157 (434)
T ss_dssp             BCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETT
T ss_pred             EEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEee
Confidence            4789999999999999999977421     112222    34555544333346789999999999885 776 999999


Q ss_pred             CCeeCCCCCcEEEEecCC---eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCC------cccCCCeeeecCc
Q psy1095         102 DGKPATPNARVTIREKED---LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR------AIISRPKVLNGLE  172 (325)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~------~~~~~p~~~~~~~  172 (325)
                      ++..+...........+.   ...|.|.++..+| |.|+|.+.|..+.......+.+....      .....|.+...+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p  236 (434)
T 1igy_B          158 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPP  236 (434)
T ss_dssp             TTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECC
T ss_pred             CCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCC
Confidence            987532100000000011   1358899999888 99999999988754333333221100      0000033332222


Q ss_pred             Cee--EecCCcEEEEEEEEecCC--CCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095         173 NLR--CCDGDSVTFECQVQVVPP--NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       173 ~~~--v~~g~~v~l~C~~~~~~~--~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  248 (325)
                      ...  +.+|+.+.|.|.+.+.++  +.+.+.|++++..+......... ...+..+...+.|.|.++..+|.|.|+|.|.
T Consensus       237 ~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  315 (434)
T 1igy_B          237 KPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPRE-EQFNSTFRVVSALPIMHQDWLNGKEFKCRVN  315 (434)
T ss_dssp             CHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCC-CCCSSSCCCCCCEECCHHHHHHTCCCBCCBC
T ss_pred             ChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcce-eCCCCcEEEEEEEEECHHHccCCCcEEEEEE
Confidence            222  778999999999998752  22689999998776533211110 0111122233579999999999999999999


Q ss_pred             eCCCc
Q psy1095         249 NELGE  253 (325)
Q Consensus       249 ~~~~~  253 (325)
                      |..+.
T Consensus       316 n~~~~  320 (434)
T 1igy_B          316 SAAFP  320 (434)
T ss_dssp             CSSCS
T ss_pred             CCCCC
Confidence            87764

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.1e-24  Score=172.96  Aligned_cols=200  Identities=27%  Similarity=0.425  Sum_probs=144.7

Q ss_pred             CCCeeEec----CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE-EEEecCCeEEEEEccCCCCCCeEEEE
Q psy1095          64 SSPRFYAV----PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        64 ~~p~~~~~----~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      .+|.+...    +....+.+|+++.|.|.+.+.|.+.+.|++++..+....+. ..........|.|.+++..|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            46665533    34567899999999999999999999999999988654322 11111233479999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEECCCcccCCCeee-ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee----CCEEeccCCCC
Q psy1095         139 KVENNYGSVEATARLEIMDPRAIISRPKVL-NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR----NNRLIKLDSDM  213 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~----~~~~~~~~~~~  213 (325)
                      .+.+..+.....+.|.|...+.  ..|.+. ..+....+..|+.+.|.|.+.+.|.  +.+.|++    ++..+......
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~--~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~--p~v~W~~~~~~~g~~~~~~~~~  165 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ--PHIQWLKHVEVNGSKVGPDGTP  165 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCC--CCCEEEECTTCSEECCTTCCEEEEEEEECSSC--CEEEEEEECCSSSCSSCTTTCC
T ss_pred             EEeecCCceEEEEEEEEeccCC--CCceeecCCCccceecCCCEEEEEEEEecCCC--CEEEEEEcccCCCcccCCCCce
Confidence            9999988888888888876422  123333 2345567888999999999999888  8999999    77766544432


Q ss_pred             ceEEE--ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC
Q psy1095         214 KPEVQ--VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       214 ~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~  267 (325)
                      .....  ...........|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  221 (241)
T 3grw_A          166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA  221 (241)
T ss_dssp             CEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-----
T ss_pred             eeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCC
Confidence            22111  1111222457899999999999999999999999998888888855443

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.93  E-value=2.9e-24  Score=169.57  Aligned_cols=173  Identities=21%  Similarity=0.358  Sum_probs=140.4

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      ..+.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+....         ...|.|.+++..|+|.|+|.+.+.
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~   87 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNN   87 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEECT
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEcC
Confidence            56788899999999999999999999999999999999999886542         246999999999999999999988


Q ss_pred             CeeE-EEEEEEEEECCCcc---------cCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC
Q psy1095         144 YGSV-EATARLEIMDPRAI---------ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM  213 (325)
Q Consensus       144 ~~~~-~~~~~l~v~~~~~~---------~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~  213 (325)
                      .+.. ...+.|.|...+..         ..+|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+..... 
T Consensus        88 ~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~--~~v~W~~~~~~~~~~~~-  164 (218)
T 3k0w_A           88 FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPI--PHYQWFKNELPLTHETK-  164 (218)
T ss_dssp             TCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSC--CEEEEEETTEECTTCCS-
T ss_pred             CCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCC--CeEEEEECCEECCCCCC-
Confidence            7643 44567777765321         12366677777778899999999999999888  89999999988865432 


Q ss_pred             ceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc-EEeEEEEEE
Q psy1095         214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE-VVTSACLIV  262 (325)
Q Consensus       214 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v  262 (325)
                                    ..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus       165 --------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  200 (218)
T 3k0w_A          165 --------------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII  200 (218)
T ss_dssp             --------------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEE
T ss_pred             --------------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEE
Confidence                          37999999999999999999998876 445566666

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.93  E-value=1.5e-24  Score=170.22  Aligned_cols=187  Identities=22%  Similarity=0.352  Sum_probs=139.6

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC-----cEEEEecCCeE--EEEEccCCCCCCeE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-----RVTIREKEDLR--FLEISEVTLEDAGL  135 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~--~l~i~~~~~~d~G~  135 (325)
                      ..||.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+....     .......+...  .|.|.+++..|+|.
T Consensus         7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            457899999999999999999999999999999999999998876432     11122222211  13445679999999


Q ss_pred             EEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCCCC
Q psy1095         136 YTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDM  213 (325)
Q Consensus       136 Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~  213 (325)
                      |+|.+.+..+.. ...+.|.|...     ++.+...+....+..|+.+.|.|.+ .+.|.  +.+.|++++..+......
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~~~~~~l~~~~~~  159 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAIL-----RDDFRQNPSDVMVAVGEPAVMECQPPRGHPE--PTISWKKDGSPLDDKDER  159 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEE-----CSSCSBCCCCEEEETTSCEEEECBCCCEESC--CEEEEEETTEEECTTSTT
T ss_pred             EEEEEECCCCceeecceEEEEEec-----cccceeCCCceEecCCCcEEEEEecCCCCCC--CEEEEEECCccCCCCcce
Confidence            999999987754 34556666543     1233344456678899999999998 88888  899999999988754432


Q ss_pred             ceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE-EEEEEEee
Q psy1095         214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS-ACLIVDVV  265 (325)
Q Consensus       214 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~v~~~  265 (325)
                      ...  ..       ..|.|.+++.+|+|.|+|.|.|..|..... +.|.|...
T Consensus       160 ~~~--~~-------~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~  203 (212)
T 2v9r_A          160 ITI--RG-------GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER  203 (212)
T ss_dssp             EEE--ET-------TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             EEc--cC-------CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeC
Confidence            221  23       379999999999999999999999886654 77877543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.93  E-value=3e-24  Score=189.21  Aligned_cols=219  Identities=15%  Similarity=0.140  Sum_probs=133.9

Q ss_pred             CCCCCcccCCCCCCCcccccccccc---------c--ccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CC-C
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI---------R--TRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PA-P   95 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~---------~--~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~   95 (325)
                      .+|.|.+++++|+|.|.|.+.+..+         .  .+.+.    .+|.+...+.. .+.+|+.+.|.|.+.+. |. +
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~g~~v~L~C~~~g~~P~~p  158 (475)
T 1iga_A           80 AYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC-STQPDGNVVIACLVQGFFPQEP  158 (475)
T ss_pred             EEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc-ccCCCCeEEEEEEEeeecCCCc
Confidence            4789999999999999999977542         0  12222    24555443322 23689999999999986 65 5


Q ss_pred             -eeEEeeCCeeCCCCCcEEEE-ecCC----eEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEEEEECCCc--------
Q psy1095          96 -WTSWSKDGKPATPNARVTIR-EKED----LRFLEISEVTLEDAGLYTIKVENNYGSV-EATARLEIMDPRA--------  160 (325)
Q Consensus        96 -~v~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~--------  160 (325)
                       .|.|++++............ ..++    ...|.|..+...|.|.|+|.+.|..+.. ...+.+.|...+.        
T Consensus       159 ~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~  238 (475)
T 1iga_A          159 LSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPP  238 (475)
T ss_pred             eEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccc
Confidence             99999987532111000011 0111    1348888888899999999999887531 2233322211000        


Q ss_pred             ----ccCCCee-eecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         161 ----IISRPKV-LNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       161 ----~~~~p~~-~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                          ...+|.+ ...+....+.+|+.+.|.|.+.+.++. .+.+.| + +..+......... ...+..+...+.|.|.+
T Consensus       239 ~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~-~~~~g~~~~~~~L~I~~  315 (475)
T 1iga_A          239 TPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPE-RDLCGCYSVSSVLPGCA  315 (475)
T ss_pred             cCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCce-ECCCCCEEEEEEEEEch
Confidence                0023443 222222335789999999999987541 258999 4 4333221111110 11111223456899999


Q ss_pred             CCCCCCeEEEEEEEeCCCcEE
Q psy1095         235 VYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      +..+|+|.|+|.|.|..+...
T Consensus       316 ~~~~d~G~Y~C~a~n~~~~~~  336 (475)
T 1iga_A          316 EPWNHGKTFTCTAAYPESKTP  336 (475)
T ss_pred             HHhccCCcEEEEEEcCCCCCc
Confidence            999999999999999877643

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.93  E-value=7.8e-24  Score=187.87  Aligned_cols=220  Identities=14%  Similarity=0.124  Sum_probs=135.3

Q ss_pred             CCCCCcccCCCCCCCcccccccccc------------------cccccC----CCCeeEe-cCCceEecCCCeEEEEEEE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI------------------RTRRLT----SSPRFYA-VPHNKICDLGDTVRFQCSV   89 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~------------------~~~~~~----~~p~~~~-~~~~~~v~~g~~v~l~C~~   89 (325)
                      .+|+|++++++|+|.|.|.+.+...                  ..+.+.    .+|.+.. .+.......|+.+.|.|.+
T Consensus        80 ~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~  159 (512)
T 1zvo_C           80 FSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLI  159 (512)
T ss_pred             EEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEE
Confidence            4789999999999999999876531                  112222    2455442 2222112246899999999


Q ss_pred             Eec-CCC-eeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE-----------E
Q psy1095          90 TGQ-PAP-WTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYGSVEATA-----------R  152 (325)
Q Consensus        90 ~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-----------~  152 (325)
                      .+. |.| .|+|++++..............++    ...|.|.....+ .|.|+|.+.|..+......           .
T Consensus       160 ~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~  238 (512)
T 1zvo_C          160 TGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQAS  238 (512)
T ss_pred             EeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCE
Confidence            886 765 899999654321000000111111    234888877777 8999999999877544333           2


Q ss_pred             EEEECCCc----------------------------------------------ccCCCeeeecC-cCeeEecCCcEEEE
Q psy1095         153 LEIMDPRA----------------------------------------------IISRPKVLNGL-ENLRCCDGDSVTFE  185 (325)
Q Consensus       153 l~v~~~~~----------------------------------------------~~~~p~~~~~~-~~~~v~~g~~v~l~  185 (325)
                      +.+..+|.                                              ...+|.+...+ ....+..|+.++|.
T Consensus       239 v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~  318 (512)
T 1zvo_C          239 SVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFT  318 (512)
T ss_pred             EEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEE
Confidence            33332211                                              11234443322 22345679999999


Q ss_pred             EEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       186 C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      |.+.+++++...+.|++++..+.............+..+...+.|.|.....+|.|.|+|.|.|..+.
T Consensus       319 C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~  386 (512)
T 1zvo_C          319 CFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP  386 (512)
T ss_pred             EEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence            99998755336999999998765211111111111223345578999999999999999999987653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=1.4e-24  Score=170.34  Aligned_cols=182  Identities=21%  Similarity=0.359  Sum_probs=133.4

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC------------CCCCcEEEEecCCeEEEEEccCCCCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA------------TPNARVTIREKEDLRFLEISEVTLED  132 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d  132 (325)
                      |..+...|....+.+|+++.|.|.+.+.|.+.+.|++++..+            ....++....    ..|.|.+++..|
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D   76 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKD   76 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGG
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCccc
Confidence            456777788888999999999999998899999999987552            1123444332    469999999999


Q ss_pred             CeEEEEEEEeCCe--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEE-EEecCCCCCeeEEeeCCE-Eec
Q psy1095         133 AGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQ-VQVVPPNDHDISWFRNNR-LIK  208 (325)
Q Consensus       133 ~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~-~~~~~~~~~~~~W~~~~~-~~~  208 (325)
                      +|.|+|.+.+..+  .....+.|.|..++.      +........+.+|+.+.|.|. +.+.|.  +.+.|++++. .+.
T Consensus        77 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~------~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~i~W~~~~~~~l~  148 (212)
T 1f97_A           77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPPS------KPTISVPSSVTIGNRAVLTCSEHDGSPP--SEYSWFKDGISMLT  148 (212)
T ss_dssp             CEEEEEEEEETTSSSEEEEEEEEEEEBCCC------CCEEECCSEEETTSCEEEEEECSCCBSC--CEEEEEETTEESBC
T ss_pred             CeEEEEEEEccCCCcccEEEEEEEEEcCCC------CcccCCccccCCCCeEEEEEEcccCcCC--CEEEEEeCCccccc
Confidence            9999999998765  556677888876533      222223456889999999999 688887  8999999998 776


Q ss_pred             cCCCCce-----EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe--EEEEEE
Q psy1095         209 LDSDMKP-----EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT--SACLIV  262 (325)
Q Consensus       209 ~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~v  262 (325)
                      .......     ......    ....|.|.+++.+|+|.|+|.|.|..|....  .+.|.|
T Consensus       149 ~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V  205 (212)
T 1f97_A          149 ADAKKTRAFMNSSFTIDP----KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA  205 (212)
T ss_dssp             -----CBSCSSSCEEECT----TTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEE
T ss_pred             ccccccccccCceeEecC----CCceEEEEecChhhCcEEEEEEccccCCccccceEEEEE
Confidence            4332100     000111    1257999999999999999999999998843  445544

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.92  E-value=2.6e-24  Score=166.90  Aligned_cols=174  Identities=18%  Similarity=0.198  Sum_probs=127.9

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+.... ...........|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSP   80 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEeCC
Confidence            46788888887 7899999999999887 678999999998775421 11111234577999999999999999999998


Q ss_pred             Cee--EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         144 YGS--VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       144 ~~~--~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      .+.  ....+.|.|....   .+|.+...+. ..+.+|+.++|.|.+.+. +  +.+.|++++..+......... ... 
T Consensus        81 ~g~~~~s~~~~l~V~~~~---~~p~~~~~~~-~~v~~G~~v~L~C~~~~~-~--~~~~w~k~g~~~~~~~~~~~~-~~~-  151 (196)
T 3p2t_A           81 VGWSQPSDPLELVMTGAY---SKPTLSALPS-PLVTSGKSVTLLCQSRSP-M--DTFLLCKERAAHPLLCLRSEH-GAQ-  151 (196)
T ss_dssp             TEEBCCCCCEEEEEECSS---CCCEEEEESC-SEECTTCCEEEEEEEEEE-E--EEEEEEETTCCCGGGSEEEEE-EEE-
T ss_pred             CcccCCCccEEEEecCCC---CCCEEEeCCc-ceecCCCeEEEEEecCCC-C--CEEEEEeCCCcccceeecccc-ccc-
Confidence            872  3445667776532   2455555443 367899999999999874 3  589999998766433211110 011 


Q ss_pred             CcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         222 KENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                         .....|.|.+++.+|+|.|+|.|.|..+
T Consensus       152 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          152 ---QHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             ---EEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             ---CcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence               1346899999999999999999999875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.92  E-value=3.5e-25  Score=187.19  Aligned_cols=206  Identities=17%  Similarity=0.189  Sum_probs=153.7

Q ss_pred             CCCCcccccccccccc-cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEE
Q psy1095          44 SSRTFTPYSLNSAIRT-RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF  122 (325)
Q Consensus        44 d~G~Y~c~~~~~~~~~-~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  122 (325)
                      |.|.|+|.+.+..... ...-.+|.+...|....+.+|+++.|.|.+.+.|.+.+.|++++..+......  .......+
T Consensus       136 ~~~~~~C~~~~~l~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~  213 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLG  213 (347)
T ss_dssp             GGGCCCCSSSSCSSCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEE
T ss_pred             cccCCCCCCChHHhcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc--ceecccce
Confidence            6799999886621111 12226899999998889999999999999999999999999988764321110  12234567


Q ss_pred             EEEccCCCCCCe-EEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEe
Q psy1095         123 LEISEVTLEDAG-LYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF  201 (325)
Q Consensus       123 l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~  201 (325)
                      |.|.+++..|+| .|+|.+.+..|.....+.|.|..+      |.+    ....+..|+.+.|.|.+.|.|.  +.+.|+
T Consensus       214 L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~------P~i----~~~~~~~g~~v~l~C~~~g~P~--p~i~W~  281 (347)
T 2ifg_A          214 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFP------ASV----QLHTAVEMHHWCIPFSVDGQPA--PSLRWL  281 (347)
T ss_dssp             EEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEE------EEE----EECCCEESSSEEEEEEEEEESC--CEEEEE
T ss_pred             EEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCC------Cee----eeccCccCceEEEEEEeeecCC--CcEEEE
Confidence            999999999999 999999999887777776666554      332    1112457899999999999988  899999


Q ss_pred             eCCEEeccCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         202 RNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +++..+.............+ ......+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       282 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             ETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             eCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            99998875443222211100 112245789999999999999999999999998888887763

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.92  E-value=1.4e-24  Score=169.28  Aligned_cols=170  Identities=16%  Similarity=0.216  Sum_probs=129.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..|.+...|....+.+|++++|.|.+.+.|.+. +.|++++..+....          ..|.|.+++.+|+|.|+|.+.|
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n   75 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQL   75 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETT
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCC
Confidence            457788888878899999999999999887765 99999998876432          4699999999999999999976


Q ss_pred             CCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCC
Q psy1095         143 NYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  222 (325)
                      .  .....+.|.|...      |.+...+ ...+.+|+.+.|.|.+.+.++. +.+.|++++..+....       .   
T Consensus        76 ~--~~s~~~~l~V~~~------p~~~~~~-~~~v~~G~~v~L~C~~~~~~p~-~~v~W~k~g~~~~~~~-------~---  135 (204)
T 3sgj_C           76 S--TLSDPVQLEVHIG------WLLLQAP-RWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKGRKYFH-------H---  135 (204)
T ss_dssp             S--BCCCCEEEEEECS------SEEEECS-CSEEETTCCEEEEEEEGGGCCC-EEEEEEETTEEEEEEE-------E---
T ss_pred             C--cccccEEEEEecC------ceEecCC-ceeEeCCCcEEEEEEecCCCCC-ceEEEEECCcEeeccc-------C---
Confidence            4  3344566777654      3333333 3678899999999999776543 7899999998764211       1   


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEEeC-CCcEEeEEEEEEEeeCC
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVANE-LGEVVTSACLIVDVVKG  267 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~l~v~~~~~  267 (325)
                          ...|.|.+++.+|+|.|+|.|.|. .+..+..+.|.|...+.
T Consensus       136 ----~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          136 ----NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA  177 (204)
T ss_dssp             ----CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             ----CceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence                247999999999999999999994 44455566777754443

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.92  E-value=1.7e-24  Score=170.15  Aligned_cols=189  Identities=14%  Similarity=0.202  Sum_probs=136.1

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC------------CCCCcEEEEecCCeEEEEEccCCCC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA------------TPNARVTIREKEDLRFLEISEVTLE  131 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~  131 (325)
                      |.+...| ...+.+|++++|.|.+.+.|.+.+.|+|.  +...            ....++.........+|.|.+++.+
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG   80 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence            4455556 77899999999999999889999999982  2111            0234666555666788999999999


Q ss_pred             CCeEEEEEEEeCCe---eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEec
Q psy1095         132 DAGLYTIKVENNYG---SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK  208 (325)
Q Consensus       132 d~G~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~  208 (325)
                      |+|.|+|.+.+..+   .......|.|...+.  .+|.+...+....+..|+.++|.|.+.+.+++.+.+.|++++..+.
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~--~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  158 (213)
T 3mj8_L           81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPN--AAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPIT  158 (213)
T ss_dssp             GCEEEEEEEEETTTTEEEEBCCEEEEEECSCC--BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             hCEEEEEEeccCCcceeEEcCceEEEEeCCCC--CCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccC
Confidence            99999999998876   344556777774321  3466666555555558999999999998754325999999999886


Q ss_pred             cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         209 LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      .......... .+......+.|.|.++..+|.|.|+|.|.|..+.....+
T Consensus       159 ~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          159 QGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             TTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             CCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            4321111111 222233446799999999999999999999886555443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.92  E-value=4.6e-24  Score=166.02  Aligned_cols=181  Identities=20%  Similarity=0.222  Sum_probs=134.5

Q ss_pred             EecCCceEecCCCeEEEEEE-EEecCC-CeeEEeeCCeeCCC--CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          69 YAVPHNKICDLGDTVRFQCS-VTGQPA-PWTSWSKDGKPATP--NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~-~~~~p~-~~v~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      ...+....+.+|+++.|.|. +.+.|. +.+.|++++..+..  ..+....  .....|.|.+++.+|+|.|+|.+.+..
T Consensus        12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~   89 (201)
T 3s97_C           12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS--QTNGNLYIANVEASDKGNYSCFVSSPS   89 (201)
T ss_dssp             SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred             cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEE--cCCCeEEECcCCcccCeEEEEEEEecC
Confidence            34456778999999999999 788888 99999999877642  2222222  223469999999999999999999865


Q ss_pred             eeEEE---EEEEEEECC-CcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec
Q psy1095         145 GSVEA---TARLEIMDP-RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD  220 (325)
Q Consensus       145 ~~~~~---~~~l~v~~~-~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  220 (325)
                      +....   .+.+.+... .....+|.+........+..|+.+.|.|.+.+.|.  +.+.|++++..+.....    ....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~v~W~~~~~~~~~~~~----~~~~  163 (201)
T 3s97_C           90 ITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV--PDIRWRKVLEPMPSTAE----ISTS  163 (201)
T ss_dssp             GTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESC--CEEEEEETTBCCCTTCE----EETT
T ss_pred             CCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCC--CceEEEeCCCcCCCcee----ecCC
Confidence            53332   233333322 11123455655556778899999999999999988  89999999986653311    1122


Q ss_pred             CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       221 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +      ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       164 ~------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          164 G------AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             T------TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             C------CEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            2      489999999999999999999999999888888774

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.92  E-value=6.9e-23  Score=159.45  Aligned_cols=188  Identities=18%  Similarity=0.291  Sum_probs=131.2

Q ss_pred             eeEecCCceE-ecCCCeEEEEEEEEecCCCeeEEeeCC-eeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          67 RFYAVPHNKI-CDLGDTVRFQCSVTGQPAPWTSWSKDG-KPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        67 ~~~~~~~~~~-v~~g~~v~l~C~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      .+.+.|.... +.+|+++.|.|.+.|.|.|.+.|++.. ..+.  ..  ....+....|.|.+++.+|+|.|+|.+.|..
T Consensus         2 ~v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   77 (202)
T 1vca_A            2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCES   77 (202)
T ss_dssp             EEEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SE--EEEETTEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred             eEEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ce--EEEcCCccEEEECcCCHHHCEEEEEEEEECC
Confidence            3455666554 459999999999999999999999843 2221  11  1223445679999999999999999999998


Q ss_pred             eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCCceEEEecCCc
Q psy1095         145 GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMKPEVQVDSKE  223 (325)
Q Consensus       145 ~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  223 (325)
                      +.....+.|.|...+..   +.+..   ...+.+|+.++|.|.+.+.++. .+.+.|++++..+.........  .....
T Consensus        78 ~~~~~~~~l~V~~~p~~---~~~~~---~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~--~~~~~  149 (202)
T 1vca_A           78 RKLEKGIQVEIYSFPKD---PEIHL---SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA--DRKSL  149 (202)
T ss_dssp             EEEEEEEEEEEEBCCSC---CEEEE---SSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC--SSCCC
T ss_pred             ceEeeEEEEEEEeCCCC---CEeCC---ceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccccc--CcCcc
Confidence            88788888999876431   33322   2568899999999999986542 2479999999877532110000  00001


Q ss_pred             ceeEEEEEeCCCCCCCCeEEEEEEEeCCCc-------EEeEEEEEEEeeC
Q psy1095         224 NLVIARLKIPHVYPEDEGEFTCRVANELGE-------VVTSACLIVDVVK  266 (325)
Q Consensus       224 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-------~~~~~~l~v~~~~  266 (325)
                      ......|.|.....+|.|.|+|.|.|..+.       ...+..|.|.+.+
T Consensus       150 ~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          150 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             EEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             eEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence            123456788888889999999999998765       3456667775443

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.92  E-value=1.1e-23  Score=165.62  Aligned_cols=185  Identities=14%  Similarity=0.109  Sum_probs=127.0

Q ss_pred             cCCceEecCC--CeEEEEEEEEecCCCeeEEeeC---CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          71 VPHNKICDLG--DTVRFQCSVTGQPAPWTSWSKD---GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        71 ~~~~~~v~~g--~~v~l~C~~~~~p~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      .|..+.+.+|  ++++|.|.+.+ |.+.++|++.   +..+....++.....   ..|.|.+++.+|+|.|+|.+.+..+
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~---~~l~I~~v~~~D~G~Y~C~a~n~~~   88 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSK---KGFTIPSYMISYAGMVFCEAKINDE   88 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETT---TEEEEEGGGTTTCSEEEEEEC----
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCC---ccEEEccCChhcCceEEEEEEECCe
Confidence            4567789999  99999999976 7789999884   666665544443322   3599999999999999999987544


Q ss_pred             eEEE-EEEEEEECCCcccCCCeeeecCcC-eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCC-
Q psy1095         146 SVEA-TARLEIMDPRAIISRPKVLNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK-  222 (325)
Q Consensus       146 ~~~~-~~~l~v~~~~~~~~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-  222 (325)
                      .... .+.|.|...    ..|.+...+.. ..+.+|+.++|.|.+.+.|.+.+.+.|++++..+..... ......... 
T Consensus        89 ~~~s~~~~l~v~~~----~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~-~~~~~~~~~~  163 (213)
T 2x1w_L           89 SYQSIMYIVVVVGY----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL-VNRDLKTQSG  163 (213)
T ss_dssp             CEECCCEEEEECBC----CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEE-EEEEECCCSS
T ss_pred             eEEEEEEEEEEeCC----cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEE-eccccccccC
Confidence            3322 255666431    22444444433 378999999999999987653368999998876432100 000000000 


Q ss_pred             --cceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEe
Q psy1095         223 --ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       223 --~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  264 (325)
                        .....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus       164 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             CSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence              022346899999999999999999999999998888888854

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.91  E-value=2.2e-25  Score=186.61  Aligned_cols=241  Identities=16%  Similarity=0.187  Sum_probs=151.2

Q ss_pred             eeeecccCCCCcccCCC----C-C----CCCCCCCCcccCCCCCCCccccccccccccc-c-------cCCCCee-EecC
Q psy1095          11 LSVKLTRPSGLMSGHST----P-R----STPRSTPPRSISPLSSRTFTPYSLNSAIRTR-R-------LTSSPRF-YAVP   72 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~----~-~----~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~-~-------~~~~p~~-~~~~   72 (325)
                      ..++|.+++..+.....    . .    .....|.|.+.+..|+|.|+|.+.+...... .       ...+|.+ ...|
T Consensus        41 ~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p  120 (323)
T 2wqr_A           41 IQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRP  120 (323)
T ss_dssp             EEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCC
T ss_pred             eEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCC
Confidence            57888887766543211    0 0    0112456777888899999999987654221 1       1123433 4555


Q ss_pred             CceEecCCCeEEEEEEEEec-CCC---eeEEeeCC-eeCCCCCcEEEEecC----CeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQ-PAP---WTSWSKDG-KPATPNARVTIREKE----DLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~-p~~---~v~W~~~~-~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      ....+.+|+++.|.|.+.+. |.+   .+.|++++ ..+...........+    ....|.|.+++.+|+|.|+|.+.|.
T Consensus       121 ~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~  200 (323)
T 2wqr_A          121 SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHP  200 (323)
T ss_dssp             CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred             CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECC
Confidence            55568899999999999885 566   89999975 444322222111111    1246999999999999999999987


Q ss_pred             CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCc-eEEEecCC
Q psy1095         144 YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK-PEVQVDSK  222 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~  222 (325)
                      .....  ..+.|........+|.+...........|+.+.|.|.+.+.+++.+.+.|+++|..+....... ......+.
T Consensus       201 ~~~~~--~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g  278 (323)
T 2wqr_A          201 HLPRA--LMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGS  278 (323)
T ss_dssp             TSSSC--EEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSS
T ss_pred             CCCCC--eeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCC
Confidence            64322  2233322111123455544332222223999999999998655325899999999876432100 00011122


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      .+...+.|.|..+..+|+|.|+|.|.|....
T Consensus       279 ~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          279 GFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             SEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             cEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            3345578999999999999999999998765

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.91  E-value=8.6e-24  Score=178.54  Aligned_cols=180  Identities=14%  Similarity=0.246  Sum_probs=123.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEec--CCCeeEEeeC--CeeC-----------------CCCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKD--GKPA-----------------TPNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~--~~~~-----------------~~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..|....+.+|++++|.|.+.+.  +.+.+.|+|+  +..+                 ....++.+..+  .+..+|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            45667789999999999999876  3678999986  3221                 11246665543  346789999


Q ss_pred             cCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEE
Q psy1095         127 EVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRL  206 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~  206 (325)
                      +++.+|+|.|.|.+.+..+.......|.|...+  ..+|.+........+.+|+.+.|.|.+.+.++..+.+.|++++..
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  162 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  162 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCEECCCEEEEECSSC--CBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred             CCCcccCEEEEEEEecCcceecCcEEEEEecCC--CCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence            999999999999998865444445677776422  124555443333446789999999999987442268999999875


Q ss_pred             eccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         207 IKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      +........  ...+..+...+.|.|.++..+| |.|+|.|.|..+..
T Consensus       163 ~~~~~~~~~--~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~  207 (344)
T 1za6_B          163 SGVHTFPAV--LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  207 (344)
T ss_dssp             TTEEECCCE--ECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTE
T ss_pred             CceeECCCe--ECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            421111000  1122223344689999998888 99999999987753

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.91  E-value=2.4e-23  Score=158.46  Aligned_cols=165  Identities=16%  Similarity=0.210  Sum_probs=126.9

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.+...|....+.+|++++|.|.+.+.|.+. +.|++++..+..          ....|.|.+++.+|+|.|+|.+.+
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n   75 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTNL   75 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEeeC
Confidence            578888888888899999999999998887766 789999987653          224699999999999999999987


Q ss_pred             CCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCC
Q psy1095         143 NYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  222 (325)
                      ..+  ...+.|.|...      +.+.. .....+.+|+.+.|.|.+.+.++. +.+.|++++..+...        .   
T Consensus        76 ~~~--s~~~~l~V~~~------~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~k~g~~~~~~--------~---  134 (175)
T 1fnl_A           76 STL--SDPVQLEVHIG------WLLLQ-APRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKDRKYF--------H---  134 (175)
T ss_dssp             SCC--CCCEEEEEECS------SEEEE-CSCSEEETTCCEEEEEEECTTCCC-EEEEEEETTEEEEEE--------E---
T ss_pred             Ccc--cccEEEEEeCC------Cceee-CCCceecCCCCEEEEEEcCCCCCc-eEEEEEECCeEccCC--------C---
Confidence            544  34456666643      22222 234568899999999999887763 599999999887421        1   


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEEeCCCc-EEeEEEEEE
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVANELGE-VVTSACLIV  262 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v  262 (325)
                         ....|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|
T Consensus       135 ---~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V  172 (175)
T 1fnl_A          135 ---HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI  172 (175)
T ss_dssp             ---ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ---CCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEE
Confidence               1247999999999999999999997553 344555555

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.91  E-value=8.3e-25  Score=177.95  Aligned_cols=212  Identities=16%  Similarity=0.157  Sum_probs=149.1

Q ss_pred             eeeecccCCCCcccCCCCCCCCCCCCCccc---CCCCCCC--cccccccccccc-----cccCC--CCeeEecCCceEec
Q psy1095          11 LSVKLTRPSGLMSGHSTPRSTPRSTPPRSI---SPLSSRT--FTPYSLNSAIRT-----RRLTS--SPRFYAVPHNKICD   78 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v---~~~d~G~--Y~c~~~~~~~~~-----~~~~~--~p~~~~~~~~~~v~   78 (325)
                      +.++|.+++..+...  .......+.|..+   +.+|+|.  |+|.+.+..+..     ..+..  +|.+.  +....+.
T Consensus        36 ~~v~W~k~~~~l~~~--~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~--~~~~~v~  111 (265)
T 2oz4_A           36 AQVHLALGDQRLNPT--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI--LTKPEVS  111 (265)
T ss_dssp             CEEEEEETTEECCCE--EEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEE--ESCSEEE
T ss_pred             eEEEEEeCCEECCce--EeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceee--cCCceec
Confidence            367787777666542  2222345666655   8889885  999998764432     22322  34444  3455688


Q ss_pred             CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe-CCeeEE---EEEEEE
Q psy1095          79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN-NYGSVE---ATARLE  154 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~---~~~~l~  154 (325)
                      +|+.+.|.|.+.  |.+.++|  +|..+...        +....|.|..+..+|.|.|+|.+.| ..|...   ..+.|.
T Consensus       112 ~G~~v~l~C~~~--p~~~i~W--~g~~~~~~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~  179 (265)
T 2oz4_A          112 EGTEVTVKCEAH--PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR  179 (265)
T ss_dssp             TTCEEEEEEECC--TTSEEEE--SSCSSSCC--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEE
T ss_pred             CCCcEEEEEEcc--CCCEEEE--CCEEccCC--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEE
Confidence            899999999987  8899999  77776322        1234588889999999999999975 335433   567777


Q ss_pred             EECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         155 IMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       155 v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      |..++..    .....+....+.+|+.+.|.|.+.|.|.  +.+.|++++..+..          .+       .+.  .
T Consensus       180 V~~~p~~----~~~~~p~~~~v~~g~~~~l~C~~~g~P~--p~i~W~~~~~~~~~----------~g-------~~~--~  234 (265)
T 2oz4_A          180 VLYGPRL----DERDCPGNWTWPENSQQTPMCQAWGNPL--PELKCLKDGTFPLP----------IG-------ESV--T  234 (265)
T ss_dssp             EEEEEEC----CGGGSCSEEEEETTCEECCCCCCEEESC--CEEEEEETTTEECC----------TT-------SCE--E
T ss_pred             EEeCCcc----ccccCCCccEEcCCCeEEEEeECccCCC--CeEEEEECCcccCC----------CC-------cEE--E
Confidence            7765322    1111233557889999999999999998  89999999873221          11       111  3


Q ss_pred             CCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         235 VYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      ++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       235 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          235 VTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence            77899999999999999999988888885

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.91  E-value=6e-24  Score=164.84  Aligned_cols=175  Identities=15%  Similarity=0.139  Sum_probs=115.7

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+..... ..........|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            57888888875 7889999999999987665 8999999987643211 0011234578999999999999999999987


Q ss_pred             CeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         144 YGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       144 ~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      .+..  ...+.|.|....   .+|.+...+ ...+.+|+.++|.|.+.+.|   +.+.|+|++..+......... ... 
T Consensus        81 ~g~~~~s~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p---~~~~W~k~g~~~~~~~~~~~~-~~~-  151 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFY---NKPTLSALP-SPVVTSGENVTLQCGSRLRF---DRFILTEEGDHKLSWTLDSQL-TPS-  151 (196)
T ss_dssp             TEECBCCCCEEEEEECSS---CCCEEEC------------CEEEEEESSCC---SEEEEEEC---CCEEEEECEE-CTT-
T ss_pred             CCcCCcCccEEEEecCCC---CCCeEEccC-CccccCCCcEEEEEEcCCCC---CEEEEEccCCccccccccccc-ccC-
Confidence            6633  345667776631   235554433 34688999999999998765   589999998876421110000 000 


Q ss_pred             CcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         222 KENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                        ......|.|.+++.+|+|.|+|.|.|..+
T Consensus       152 --~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          152 --GQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             --SCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             --CCceeEEEeeecCcccCeeEEEEEEccCC
Confidence              01346899999999999999999999764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.91  E-value=9.6e-24  Score=165.92  Aligned_cols=184  Identities=15%  Similarity=0.171  Sum_probs=129.6

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe--eC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK--PA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +...|....+.+|+++.|.|.+.+.|.+.+.|+|++.  .+            ....++.........+|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            4566788889999999999999998888999998532  11            112466666556667899999999999


Q ss_pred             eEEEEEEEeCCeeEE-EEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCC
Q psy1095         134 GLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD  212 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~  212 (325)
                      |.|+|.+.+..+... ....|.|...   ..+|.+........+..|+.+.|.|.+.+.+++...+.|++++..+.....
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  160 (213)
T 3d9a_L           84 GMYFCQQSNSWPYTFGGGTKLEIKRA---DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  160 (213)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             EEEEEeeecCCcceeCCCEEEEEecC---CCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence            999999988765432 2345666543   124666554444444579999999999885443248999999998765410


Q ss_pred             CceEEE-ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         213 MKPEVQ-VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       213 ~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      ...... ..+..+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            000000 111122345689999999999999999999987654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.91  E-value=1.6e-23  Score=164.34  Aligned_cols=183  Identities=15%  Similarity=0.180  Sum_probs=127.7

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +.. |....+.+|++++|.|.+.+.|.+.+.|+++.  ..+            ....++.+...+....|.|.+++.+|+
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT   82 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC
Confidence            444 77888999999999999998888899999842  221            112466665555667899999999999


Q ss_pred             eEEEEEEEeCCeeEE-EEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC-C
Q psy1095         134 GLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD-S  211 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~-~  211 (325)
                      |.|.|.+.+..+... ....|.|...   ..+|.+........+..|+.++|.|.+.+.+++.+.+.|+++|..+... .
T Consensus        83 G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  159 (210)
T 1lk3_L           83 AIYFCQQSWNGPLTFGAGTKLELKRA---DAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL  159 (210)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCC---CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE
T ss_pred             eEEEEEEEcCCCceeCCCEEEEEcCC---CcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce
Confidence            999999988765332 2345666543   1246665544443345799999999999855432489999999987644 1


Q ss_pred             CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         212 DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      .........+..+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus       160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          160 DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            0000000111223345689999999999999999999976543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.91  E-value=1.5e-23  Score=164.57  Aligned_cols=186  Identities=14%  Similarity=0.232  Sum_probs=132.3

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeCC------------CCCcEEEEecCCeEEEEEccCCCCC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPAT------------PNARVTIREKEDLRFLEISEVTLED  132 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d  132 (325)
                      .+...| ...+.+|++++|.|.+.  +.+.+.|+|+  +....            ...++.........+|.|.+++.+|
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   79 (211)
T 3tv3_L            3 ALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDD   79 (211)
T ss_dssp             CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred             eEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhH
Confidence            344445 77899999999999998  8889999984  22211            2346665555667789999999999


Q ss_pred             CeEEEEEEEeCCe--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC
Q psy1095         133 AGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD  210 (325)
Q Consensus       133 ~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~  210 (325)
                      +|.|+|.+.+..+  .......|.|...+  ..+|.+...+....+..|+.+.|.|.+.+.+++.+.+.|+++|..+...
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  157 (211)
T 3tv3_L           80 EAVYYCGSLVGNWDVIFGGGTKLTVLGQP--KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG  157 (211)
T ss_dssp             CEEEEEEEEETTTEEEECCCEEEEECCSC--CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             CEEEEEEEecCCCceeECCCceEEEeCCC--CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCC
Confidence            9999999998776  33445667776322  2356666555444455799999999999875433899999999988642


Q ss_pred             CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         211 SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      ..........+..+...+.|.|.++..+|.|.|+|.|.|..+.....
T Consensus       158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~  204 (211)
T 3tv3_L          158 VETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  204 (211)
T ss_dssp             EEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred             cccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence            21111111222333455789999999999999999999988655444

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.91  E-value=7.9e-24  Score=166.29  Aligned_cols=179  Identities=17%  Similarity=0.242  Sum_probs=129.0

Q ss_pred             EecCCceEecCCCeEEEEEEEEecC----CCeeEEee----------------CCeeCCC-----CCcEEEEe---cCCe
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQP----APWTSWSK----------------DGKPATP-----NARVTIRE---KEDL  120 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~----------------~~~~~~~-----~~~~~~~~---~~~~  120 (325)
                      ...+..+.+.+|+++.|.|.+.+.+    .+.+.|++                ++..+..     ..+..+..   ..+.
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   83 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD   83 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence            3445567789999999999998766    46899998                3333321     23443322   1234


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-EecCCCCCeeE
Q psy1095         121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-QVVPPNDHDIS  199 (325)
Q Consensus       121 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~~~~  199 (325)
                      .+|.|.+++.+|+|.|+|.+.+..+.....+.|.|...+..   +..   .....+..|+.+.|.|.+ .+.|.  +.+.
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~---~~~---~~~~~~~~g~~v~l~C~~~~g~p~--~~v~  155 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG---TRC---FVDGSEEIGNDFKLKCEPKEGSLP--LQFE  155 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBS---CEE---EEESCCBTTCCEEEEEECSBCCSS--CEEE
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCC---cee---eeecceecCCcEEEEecCCCCCCC--CEEE
Confidence            67999999999999999999999888888888999876432   222   222346789999999999 77777  8999


Q ss_pred             EeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         200 WFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       200 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |++++............  ..      ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       156 W~~~~~~~~~~~~~~~~--~~------~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          156 WQKLSDSQTMPTPWLAE--MT------SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             EEECSTTCCCCGGGGGG--TT------SSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             EEECCCCCccCccceec--cC------CCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            99954322221111100  11      1389999999999999999999999999888888773

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.91  E-value=8.5e-24  Score=164.29  Aligned_cols=175  Identities=17%  Similarity=0.199  Sum_probs=120.5

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+....... ........|.|.+++..|+|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (198)
T 1ugn_A            4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGSD   80 (198)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-ccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence            57888888874 7899999999999988765 699999988663111000 00112346999999999999999999987


Q ss_pred             C-e--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec
Q psy1095         144 Y-G--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD  220 (325)
Q Consensus       144 ~-~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  220 (325)
                      . +  .....+.|.|...+   .+|.+...+ ...+.+|+.++|.|.+.+. +  +.+.|++++..+.............
T Consensus        81 ~~g~~~~s~~~~l~V~~~~---~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~--~~v~W~k~g~~~~~~~~~~~~~~~~  153 (198)
T 1ugn_A           81 TAGRSESSDPLELVVTGAY---IKPTLSAQP-SPVVNSGGNVTLQCDSQVA-F--DGFILCKEGEDEHPQCLNSQPHARG  153 (198)
T ss_dssp             TTEECCCCCCEEEEEECSS---CCCEEEEES-CSEEETTCCEEEEEECSSC-C--SEEEEEEC------CEEEC------
T ss_pred             CCCcccCCccEEEEEcccc---cCCccccCC-ccccCCCCcEEEEEecCCC-C--cEEEEEECCCccCCccccccccCCC
Confidence            6 5  23455677777631   235554443 3578899999999999877 4  7999999988764321100000001


Q ss_pred             CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         221 SKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       221 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +    ....|.|.+++.+|+|.|+|.|.|..+
T Consensus       154 ~----~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          154 S----SRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             C----CEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             c----ceeEEEecccCcccCeEEEEEEEeCCC
Confidence            0    236899999999999999999999865

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.91  E-value=5.7e-23  Score=179.54  Aligned_cols=180  Identities=16%  Similarity=0.251  Sum_probs=120.6

Q ss_pred             EecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeCC-----------------CCCcEEEEec--CCeEEEEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPAT-----------------PNARVTIREK--EDLRFLEI  125 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~--~~~~~l~i  125 (325)
                      +..|....+.+|++++|.|.+.+.+  .+.+.|||+.  ..+.                 ...++.+..+  .+..+|.|
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (444)
T 1igt_B            4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQM   83 (444)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEE
Confidence            3456677899999999999998764  5789999852  2110                 1235655442  34678999


Q ss_pred             ccCCCCCCeEEEEEEEeCCee---EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCeeEEe
Q psy1095         126 SEVTLEDAGLYTIKVENNYGS---VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHDISWF  201 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~~~W~  201 (325)
                      .+++.+|+|.|.|.+.+..+.   ......|.|....  ..+|.+........+.+|+.+.|.|.+.+. |.+ ..+.|+
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~  160 (444)
T 1igt_B           84 SRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK--TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP-VTLTWN  160 (444)
T ss_dssp             CSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC--CBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSC-CEEEEG
T ss_pred             CCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCC--CCCCceeEecccccCCCCCcEEEEEEEcceeCCC-cEEEEe
Confidence            999999999999999886543   2223566665321  123544433333345789999999999986 441 499999


Q ss_pred             eCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      +++..+.........  .. ..+...+.|.|.++..+| |.|+|.|.|..+...
T Consensus       161 ~~~~~~~~~~~~~~~--~~-~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~  210 (444)
T 1igt_B          161 SGSLSSGVHTFPAVL--QS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK  210 (444)
T ss_dssp             GGTBCTTEEECCCEE--ET-TEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEE
T ss_pred             cCCCCCCeEecCccc--cC-CcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcc
Confidence            988753211110100  11 222334679999999999 999999999887643

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.90  E-value=1.9e-22  Score=154.68  Aligned_cols=168  Identities=20%  Similarity=0.345  Sum_probs=123.2

Q ss_pred             eEecCCCeEEEEEEEEecCCC--eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR  152 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  152 (325)
                      ..+.+|+++.|.|.+.+.|.|  .+.|++++..+......     .....|.|.  +.+|+|.|+|.+.+..   ...+.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~   77 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTAN   77 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEESTT---SCEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECCc---CcEEE
Confidence            347889999999999887766  89999999887654321     123346665  6899999999999733   24566


Q ss_pred             EEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee---CCEE-eccCCCCceEEEecCCcceeEE
Q psy1095         153 LEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR---NNRL-IKLDSDMKPEVQVDSKENLVIA  228 (325)
Q Consensus       153 l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~  228 (325)
                      |.|..+      |.+...+....+.+|+.+.|.|.+.+.|+. +.+.|++   ++.. +......+......+    ..+
T Consensus        78 l~V~~~------P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  146 (184)
T 3b5h_A           78 IQLHGP------PRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAWYKITDSEDKALMNGSESRFFVSSSQ----GRS  146 (184)
T ss_dssp             EEECCS------CCCEESCSEEEECTTSCEEEEEECCCSSCC-CEEEEEECCSSSCEECCTTGGGTEEEEEET----TEE
T ss_pred             EEEecC------CceeecCCCcEEcCCCcEEEEEEECCCCCC-CeEEEEEcCCCCCEEeecCCCCEEEEEecC----Cee
Confidence            777654      444554555678899999999999998822 8999999   4444 332221222222222    346


Q ss_pred             EEEeCCCC-CCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         229 RLKIPHVY-PEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       229 ~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      .|.|.+++ .+|+|.|+|.|.|..|.....+.|.|.
T Consensus       147 ~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          147 ELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            89999999 999999999999999998888888773

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.90  E-value=2.1e-23  Score=158.94  Aligned_cols=168  Identities=16%  Similarity=0.193  Sum_probs=125.1

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.+...|....+.+|++++|.|.+.+.+.+ .+.|++++..+...          ...|.|.+++.+|+|.|+|.+.+
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcCC
Confidence            57888888888889999999999999887765 69999999887642          24699999999999999999987


Q ss_pred             CCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCC
Q psy1095         143 NYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  222 (325)
                      ..+.  ..+.|.|...      +.+.. .....+.+|+.+.|.|.+.+.++. +.+.|++++..+.....          
T Consensus        73 ~~~s--~~~~l~V~~~------~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~----------  132 (176)
T 1f2q_A           73 VNES--EPVYLEVFSD------WLLLQ-ASAEVVMEGQPLFLRCHGWRNWDV-YKVIYYKDGEALKYWYE----------  132 (176)
T ss_dssp             SSCC--CCEEEEEECS------SEEEE-ESCSEEETTSCEEEEEEEGGGCCE-EEEEEEETTEECCSCCC----------
T ss_pred             cccc--ccEEEEEeCc------ceeec-CCcceeeCCCCEEEEEEecCCCCc-eEEEEEECCEEEeeecC----------
Confidence            5543  3455666532      22222 234578899999999999654442 79999999988753221          


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEEeCCCc-EEeEEEEEEEee
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVANELGE-VVTSACLIVDVV  265 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~  265 (325)
                          ...|.|.+++.+|+|.|+|.|.|..+. ....+.|.|...
T Consensus       133 ----~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  172 (176)
T 1f2q_A          133 ----NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA  172 (176)
T ss_dssp             ----SSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             ----CCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecC
Confidence                137999999999999999999996443 334466776443

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.90  E-value=5.8e-24  Score=166.47  Aligned_cols=183  Identities=21%  Similarity=0.332  Sum_probs=132.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC------------CCCCcEEEEecCCeEEEEEccCCCC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA------------TPNARVTIREKEDLRFLEISEVTLE  131 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~  131 (325)
                      .++.+...|....+.+|+++.|.|.+.+.|.+.+.|++++..+            ....++....    ..|.|.+++.+
T Consensus         3 ~~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~   78 (209)
T 1nbq_A            3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTRE   78 (209)
T ss_dssp             CCCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTT
T ss_pred             ceEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHH
Confidence            3566777788888999999999999999899999999987542            1123333332    46999999999


Q ss_pred             CCeEEEEEEEeCCe--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-EecCCCCCeeEEeeCCEEec
Q psy1095         132 DAGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-QVVPPNDHDISWFRNNRLIK  208 (325)
Q Consensus       132 d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~  208 (325)
                      |+|.|+|.+.+..+  .....+.|.|..++..      ........+..|+.+.|.|.+ .+.|.  +.+.|++++..+.
T Consensus        79 d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~------~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~~~~~~~~  150 (209)
T 1nbq_A           79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK------PTVNIPSSATIGNRAVLTCSEQDGSPP--SEYTWFKDGIVMP  150 (209)
T ss_dssp             SCSEEEEEEEETTSSCEECCEEECCEEBCCCC------CCCCCBSEEETTSCEEECCCCCSCBSC--CEEEEEETTCCCC
T ss_pred             HCcEEEEEEecCCCCccceEEEEEEEecCCcC------CCcccccceecCCEEEEEEeCCCCCCC--ceeEEEECCeeCC
Confidence            99999999998754  3445677777765432      222234568899999999997 78887  8999999998876


Q ss_pred             cCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         209 LDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       209 ~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      ............. ........|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~  201 (209)
T 1nbq_A          151 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN  201 (209)
T ss_dssp             SCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred             CccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccc
Confidence            5432210000000 0000125799999999999999999999999874433

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.90  E-value=1.3e-22  Score=159.40  Aligned_cols=185  Identities=15%  Similarity=0.201  Sum_probs=128.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecC---CCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTL  130 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p---~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~  130 (325)
                      +.. |....+.+|++++|.|.+.+.|   .+.+.|++++  ..+            ....++.....+....|.|.+++.
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   82 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT   82 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence            445 7888899999999999998876   4789999853  221            113466655555667899999999


Q ss_pred             CCCeEEEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEecc
Q psy1095         131 EDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL  209 (325)
Q Consensus       131 ~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~  209 (325)
                      +|+|.|.|.+.+..+.. .....|.|...+  ..+|.+........+..|+.++|.|.+.+.+++...+.|++++..+..
T Consensus        83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  160 (212)
T 1q0x_L           83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQP--KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA  160 (212)
T ss_dssp             GGCEEEEEEEECSSCEEECCCEEEEECCSC--CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             cCCEEEEEEEecCchhhcCCCeEEEEecCC--CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCC
Confidence            99999999999876532 233456664322  134666554444444568999999999987653248999999998865


Q ss_pred             CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      +..........+..+...+.|.|..+..+|.|.|+|.|.|......
T Consensus       161 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (212)
T 1q0x_L          161 GMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN  206 (212)
T ss_dssp             TEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred             CeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence            4211111111222334456899999999999999999999865543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.90  E-value=5e-22  Score=170.50  Aligned_cols=262  Identities=14%  Similarity=0.131  Sum_probs=178.3

Q ss_pred             CCCCCCcccCCCCCCCcccccccccccc-----cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA  106 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~  106 (325)
                      ..+|.|.+++.+|+|.|+|.+.+..+..     +.+..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus        62 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l  141 (389)
T 2jll_A           62 SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVL  141 (389)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEES
T ss_pred             cceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccC
Confidence            3478999999999999999998765532     34446777766666557899999999999999999999999999998


Q ss_pred             CCCC--cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEE
Q psy1095         107 TPNA--RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF  184 (325)
Q Consensus       107 ~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l  184 (325)
                      ....  ++.+...+....|.|.++...|+|.|+|.+.|..|.......+.+...|.   +|...    ......+..+.|
T Consensus       142 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~---~P~~~----~~~~~~~~~~~l  214 (389)
T 2jll_A          142 PAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS---SPYGV----KIIELSQTTAKV  214 (389)
T ss_dssp             SCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC---CCEEE----EEEEECSSCEEE
T ss_pred             CcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC---CCcce----EEeeccCCEEEE
Confidence            7653  56666666667899999999999999999999999887777777755432   23211    111234577899


Q ss_pred             EEEEEec----CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE--
Q psy1095         185 ECQVQVV----PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA--  258 (325)
Q Consensus       185 ~C~~~~~----~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~--  258 (325)
                      .|.....    +.....+.|.+++.....      .....+    ....+.|.++...+.+.|+|.|.|..|....+.  
T Consensus       215 ~w~~p~~~~g~pi~~y~v~~~~~~~~~~~------~~~~~~----~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~  284 (389)
T 2jll_A          215 SFNKPDSHGGVPIHHYQVDVKEVASEIWK------IVRSHG----VQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE  284 (389)
T ss_dssp             EEECCSCCTTSCEEEEEEEEEETTCSCCE------EEECST----TCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCE
T ss_pred             EEeCCCCCCCcceEEEEEEEEECCCcccE------EeeccC----CcceEEECCccCCCEEEEEEEEEcCCccCCCCcce
Confidence            9975321    110135778776542110      000111    124799999999999999999999887543322  


Q ss_pred             -------------------------EEEEEeeCCeecCCCC---ceEEEE--------------eCCEEEEEEcCCCCCC
Q psy1095         259 -------------------------CLIVDVVKGKDLTSDG---RLNIIT--------------VGGTSVLTIEDITGDD  296 (325)
Q Consensus       259 -------------------------~l~v~~~~~~~~~~~~---~~~~~~--------------~~~~~~l~i~~v~~~d  296 (325)
                                               .|.|. .+.   ..++   .+.+..              ......+.|.++....
T Consensus       285 ~~~t~~~~~p~~p~~~~~~~~~~~v~l~W~-~p~---~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t  360 (389)
T 2jll_A          285 IFQTLPVREPSPPSIHGQPSSGKSFKLSIT-KQD---DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTM  360 (389)
T ss_dssp             EEECCCCCCCCCCCEEEEEETTTEEEEEEC-CCC---CCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTC
T ss_pred             EEEecCCCCCCCCccccccCcCCEEEEEEE-CCC---CCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCC
Confidence                                     22221 000   0011   111111              1122357888888888


Q ss_pred             CeEEEEEEECCCeeEEeE
Q psy1095         297 SGKYQVHVSNQHGSDSCY  314 (325)
Q Consensus       297 ~G~Y~C~a~n~~g~~~~~  314 (325)
                      ...|+..|.|..|....+
T Consensus       361 ~Y~~~V~A~n~~G~s~~s  378 (389)
T 2jll_A          361 GYEVQITAANRLGYSEPT  378 (389)
T ss_dssp             EEEEEEEEEC-CCBCCCE
T ss_pred             EEEEEEEEEcCCcCCCce
Confidence            889999999999976554

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.90  E-value=2.5e-24  Score=181.77  Aligned_cols=219  Identities=13%  Similarity=0.182  Sum_probs=137.9

Q ss_pred             CCCCCcccCCCCCCCcccccccccc-----cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CC-CeeEEee
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI-----RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PA-PWTSWSK  101 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~-----~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~v~W~~  101 (325)
                      .+|.|.+++++|+|.|.|.+.+...     ..+.+.    .+|.+...+....+.+|+.++|.|.+.|. |. +.+.|++
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  158 (344)
T 1za6_B           79 AYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS  158 (344)
T ss_dssp             EEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETT
T ss_pred             EEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEec
Confidence            4789999999999999999987421     112222    35666554444456799999999999886 65 7999999


Q ss_pred             CCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEEC------------------CC
Q psy1095         102 DGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD------------------PR  159 (325)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~------------------~~  159 (325)
                      ++..+...........++    ...|.|.++..+| |.|+|.+.|..+.......+.+..                  ..
T Consensus       159 ~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~  237 (344)
T 1za6_B          159 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSG  237 (344)
T ss_dssp             TTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC-------------------
T ss_pred             CCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccC
Confidence            987642110000001111    1358898888878 999999998876533222221100                  00


Q ss_pred             cccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         160 AIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       160 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      ....+|.+...........|..+.|.|.+.|++++.+.+.|+++|..+......... ...+..+...+.|.|.....+|
T Consensus       238 ~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~-~~~~g~~~~~s~l~i~~~~~~~  316 (344)
T 1za6_B          238 GQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPV-LDSDGSFFLYSKLTVDKSRWQQ  316 (344)
T ss_dssp             -CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCE-ECTTSCEEEEEEEEECHHHHHT
T ss_pred             CCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceE-ECCCCcEEEEEEEEEChHHccC
Confidence            112345554433322233467799999999965533789999999877532211111 1112223345678888777788


Q ss_pred             CeEEEEEEEeCCCc
Q psy1095         240 EGEFTCRVANELGE  253 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~  253 (325)
                      .|.|+|.|.|....
T Consensus       317 ~g~YtC~a~~~~l~  330 (344)
T 1za6_B          317 GNVFSCSVMHEALH  330 (344)
T ss_dssp             TCEEEEEEECTTST
T ss_pred             CCeEEEEEEcCCCC
Confidence            99999999997653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.90  E-value=5.9e-23  Score=161.36  Aligned_cols=185  Identities=18%  Similarity=0.258  Sum_probs=131.9

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC---ee-----------CCCCCcEEEEecCCeEEEEEccCCCC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG---KP-----------ATPNARVTIREKEDLRFLEISEVTLE  131 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~---~~-----------~~~~~~~~~~~~~~~~~l~i~~~~~~  131 (325)
                      |.+...|....+.+|++++|.|.+.+.|.+.+.|+|..   ..           .....++.........+|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            56677788889999999999999998888999999832   10           01234666665566778999999999


Q ss_pred             CCeEEEEEEEeCCe-eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC
Q psy1095         132 DAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD  210 (325)
Q Consensus       132 d~G~Y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~  210 (325)
                      |+|.|+|.+.+..+ .......|.|...   ..+|.+...+....+..|+.+.|.|.+.+.+++.+.+.|++++..+...
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  158 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRA---DAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG  158 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCC---CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             cCEEEEEecccCCceEEcCCceEEEecc---CCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence            99999999987654 2233455666332   2456666655555556788899999999876533689999999988643


Q ss_pred             C-CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         211 S-DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       211 ~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      . ............+...+.|.|.....+|.|.|+|.|.|....
T Consensus       159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            1 000000011223344568999998889999999999997644

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.90  E-value=4.2e-23  Score=162.55  Aligned_cols=170  Identities=15%  Similarity=0.124  Sum_probs=122.0

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeE--EEEEccCCCCCCeEEEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR--FLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~  140 (325)
                      ..+|.|...|. ..+.+|++|+|.|.+.+ +.+.+.|+|++..+..... .........  .|.|.+++.+|+|.|+|.+
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            46788888887 47899999999999876 6789999998865532111 111111223  7999999999999999999


Q ss_pred             EeCCeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEE
Q psy1095         141 ENNYGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ  218 (325)
Q Consensus       141 ~~~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  218 (325)
                      .|..+..  ...+.|.|...   ..+|.+...+ ...+.+|+.++|.|.+.+.+.  +.+.|+|+|..+...    ..  
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~---~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~--~~~~W~k~g~~~~~~----~~--  151 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGL---YGKPFLSADR-GLVLMPGENISLTCSSAHIPF--DRFSLAKEGELSLPQ----HQ--  151 (218)
T ss_dssp             EETTTEEEECCCEEEEEECS---SCCCEEEESS-CSEECTTCCCEEEEECSSSCC--SEEEEEETTCSSCCS----EE--
T ss_pred             EcCCCceeecCCEEEEEcCc---ccCCEEEeCC-CCccCCCCCEEEEEeCCCCCC--CEEEEEECCCccccc----cc--
Confidence            9875432  33466777653   1345655444 457889999999997655555  789999998866431    11  


Q ss_pred             ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       219 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...    ....|.|.+++.+|+|.|+|.|.|..
T Consensus       152 ~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          152 SGE----HPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             ECS----SSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCC----ccCEEEEccCCcccCEEEEEEEEcCC
Confidence            111    12689999999999999999999864

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.90  E-value=3.1e-23  Score=159.15  Aligned_cols=161  Identities=16%  Similarity=0.207  Sum_probs=121.4

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..+|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|++...        .  .....|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------~--~~~~~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A            6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------Y--QDQAVLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------E--ESSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------c--CcccEEEECcCChhhCceEEEEEEc
Confidence            367888888875 7899999999999877 77899999998651        1  1224699999999999999999999


Q ss_pred             CCeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec
Q psy1095         143 NYGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD  220 (325)
Q Consensus       143 ~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  220 (325)
                      ..+..  ...+.|.|...   ..+|.+...+ ...+.+|+.+.|.|.+.+. +  +.+.|++++..+......  .    
T Consensus        74 ~~g~~~~s~~~~l~V~~~---~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~--~~~~w~k~g~~~~~~~~~--~----  140 (184)
T 2gi7_A           74 GSLWSLPSDQLELVATGV---FAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-F--DQFALYKEGDPAPYKNPE--R----  140 (184)
T ss_dssp             TTEEBCCCCCEEEEEESS---SCCCEEEEEC-CCSSCCTTCEEEEEECSSC-C--CEEEEEECCCCTTSCCCC--E----
T ss_pred             CCCccCCCCCEEEEecCc---CCCCEEEeCC-CceecCCCcEEEEEEcCCC-C--cEEEEEECCCcCcceecC--C----
Confidence            77532  34466777543   1345665544 4567789999999997643 3  689999999876542211  0    


Q ss_pred             CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         221 SKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       221 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                          .....|.|.+++.+|+|.|+|.|.|..+
T Consensus       141 ----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          141 ----WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             ----EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             ----CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence                1235799999999999999999999754

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.90  E-value=6.3e-23  Score=165.24  Aligned_cols=187  Identities=18%  Similarity=0.232  Sum_probs=125.5

Q ss_pred             eEecCCceEecCCCeEEEEEEEEe---cCCCeeEEeeCCeeCC------------------------------CCCcEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTG---QPAPWTSWSKDGKPAT------------------------------PNARVTI  114 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~---~p~~~v~W~~~~~~~~------------------------------~~~~~~~  114 (325)
                      +..++.++.+.+|+++.|.|.+.+   .|.+.+.|++++....                              ...+..+
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            344555778999999999999987   7888999999875420                              0112222


Q ss_pred             EecCCeEEEEEccCCCCCCeEEEEEEEeCCee-----EEEEEEEEEECCCcccCCCeeee-cCcCeeEecCCcEEEEEEE
Q psy1095         115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGS-----VEATARLEIMDPRAIISRPKVLN-GLENLRCCDGDSVTFECQV  188 (325)
Q Consensus       115 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~p~~~~-~~~~~~v~~g~~v~l~C~~  188 (325)
                      .. .+...|.|.+++.+|+|.|+|.+.+..+.     ....+.|.|...+.   +|.+.. .+....+.+|+.+.|.|.+
T Consensus        85 ~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~~~~~~~~~~v~~g~~v~L~C~~  160 (250)
T 2fbo_J           85 AN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP---SNNVHVSTAEVVQVDEGNDITMTCPC  160 (250)
T ss_dssp             SC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSC---CSCCEECCCSEEECCTTCCEEECCCE
T ss_pred             cc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCC---CCeEEEecCceEEecCCCcEEEEEEe
Confidence            11 12346999999999999999999987653     24577788876421   122222 2334566779999999999


Q ss_pred             EecCCCCCeeEEeeCCEEeccCCCCceEEE-----------ecC-Ccce---eEEEEEeCCCCCCCCeEEEEEEEeCCC-
Q psy1095         189 QVVPPNDHDISWFRNNRLIKLDSDMKPEVQ-----------VDS-KENL---VIARLKIPHVYPEDEGEFTCRVANELG-  252 (325)
Q Consensus       189 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-----------~~~-~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~-  252 (325)
                      .+.|.  +.+.|++++..+...........           ... ....   ....|.|.+++.+|+|.|+|.|.|..| 
T Consensus       161 ~g~p~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          161 TDCAN--ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             ESCTT--CEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             cCCCC--CeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence            99888  79999999887654221100000           000 0000   114899999999999999999999554 


Q ss_pred             --cEEeEEEE
Q psy1095         253 --EVVTSACL  260 (325)
Q Consensus       253 --~~~~~~~l  260 (325)
                        .....+.|
T Consensus       239 ~g~~~~~~~l  248 (250)
T 2fbo_J          239 LDADRSSTIL  248 (250)
T ss_dssp             GGEEEEEEEE
T ss_pred             cCccceeEEE
Confidence              44444444

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.90  E-value=1e-22  Score=160.61  Aligned_cols=188  Identities=18%  Similarity=0.277  Sum_probs=127.4

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCC--ee-------------C---CCCCcEEEEecCCeEEEEEc
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDG--KP-------------A---TPNARVTIREKEDLRFLEIS  126 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~--~~-------------~---~~~~~~~~~~~~~~~~l~i~  126 (325)
                      |.+...| ...+.+|++++|.|.+.+. |.+.+.|+|..  ..             .   ....++.+.......+|.|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            4556666 7889999999999999988 88999999832  10             0   01135555555566789999


Q ss_pred             cCCCCCCeEEEEEEEeCCe-----eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEe
Q psy1095         127 EVTLEDAGLYTIKVENNYG-----SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF  201 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~  201 (325)
                      +++.+|+|.|.|.+.+..+     .......|.|...+.  .+|.+........+..|+.+.|.|.+.+.++....+.|+
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~--~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~  158 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPK--STPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWK  158 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC--BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCC--CCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEE
Confidence            9999999999999987654     233356777775421  346665544444556788999999999854331489999


Q ss_pred             eCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      +++..+............ +..+...+.|.|.....+|.|.|+|.|.|..+.....
T Consensus       159 k~g~~l~~~~~~~~~~~~-~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          159 ANGTPITQGVDTSNPTKE-GNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             ETTEEC---------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             ECCEECcCceecCccccc-CCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            999988653221111111 2222334568899888889999999999988755443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.90  E-value=8e-22  Score=156.40  Aligned_cols=178  Identities=13%  Similarity=0.169  Sum_probs=117.8

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCC---eeEEeeCCeeC-----------CC------CCcEEEEe---cCCeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAP---WTSWSKDGKPA-----------TP------NARVTIRE---KEDLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~---~v~W~~~~~~~-----------~~------~~~~~~~~---~~~~~~l~i~~  127 (325)
                      ++.++.+.+|++++|.|.+.+.+.+   .|.|+|++...           ..      ..+.....   ..+..+|.|.+
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   89 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN   89 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence            3446778999999999999875543   68999875321           00      11222222   13457899999


Q ss_pred             CCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCeeEEeeCCEE
Q psy1095         128 VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHDISWFRNNRL  206 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~  206 (325)
                      ++.+|+|.|+|.+.|..+.....+.+.+.....        .......+.+|+.+.|.|.+.+. |.  +.+.|++++..
T Consensus        90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~g~~v~l~c~~~g~~P~--p~i~W~k~~~~  159 (226)
T 4f80_A           90 VTASDSGKYLCYFQDGDFYEKALVELKVAALGS--------DLHVDVKGYKDGGIHLECRSTGWYPQ--PQIQWSNNKGE  159 (226)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCC--------CCEEEEEEEETTEEEEEEEEEEEBSC--CEEEEECTTSC
T ss_pred             CchHHCeeEEEEEECCCcEEEEEEEEeecccee--------cccceeeeccCCceeeEEEeccCCCC--CEEEEEECCce
Confidence            999999999999999888777666655543311        11123457789999999999985 66  89999997654


Q ss_pred             eccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         207 IKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      +............++    ....+.+..++.+|.|.|+|.|.|..+.....+.|.|
T Consensus       160 ~~~~~~~~~~~~~~g----~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v  211 (226)
T 4f80_A          160 NIPTVEAPVVADGVG----LYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI  211 (226)
T ss_dssp             BCCCEECCCEECTTS----CEEEEEEEEECC----CEEEEEEETTTTEEEEEEECC
T ss_pred             EcCCCceEEEECCCC----cEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEE
Confidence            433222222211111    1233444456789999999999999999988888876

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=168.67  Aligned_cols=218  Identities=16%  Similarity=0.217  Sum_probs=152.8

Q ss_pred             eeeecccCCCCcccCCCC------CCCCCCCCCcccCCCCCCCcccccccccccc-----cccCCCCeeEe-----cCCc
Q psy1095          11 LSVKLTRPSGLMSGHSTP------RSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSSPRFYA-----VPHN   74 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~p~~~~-----~~~~   74 (325)
                      ..+.|.+++..+......      .....+|.|.+++.+|+|.|+|.+.+..+..     +.+..+|.+..     .+..
T Consensus        34 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~  113 (305)
T 2nzi_A           34 PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGA  113 (305)
T ss_dssp             CEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCC
T ss_pred             CeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCcccccccc
Confidence            356777766555432110      1112378999999999999999998765432     23333443322     2345


Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEcc-CCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARL  153 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l  153 (325)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.+ +...|.|.|+|.+.|..|.....+.|
T Consensus       114 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  193 (305)
T 2nzi_A          114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL  193 (305)
T ss_dssp             EEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEE
Confidence            67889999999999999999999999999998877777777666778899999 99999999999999999998888889


Q ss_pred             EEECCCcccCCCeeeecCcCeeEecCCcEEEE--------------EEEEecCCCCCeeEEeeCCEEeccCCCCceEEEe
Q psy1095         154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFE--------------CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV  219 (325)
Q Consensus       154 ~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~--------------C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  219 (325)
                      .|...|..   |.....    ....+..+.|.              |.+...+.  ....|.+.+...            
T Consensus       194 ~v~~~P~~---p~~~~~----~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~--~~~~w~~~~~~~------------  252 (305)
T 2nzi_A          194 DVADVPDP---PRGVKV----SDVSRDSVNLTWTEPASDGGSKITNYIVEKCAT--TAERWLRVGQAR------------  252 (305)
T ss_dssp             EEEBCCCC---CEEEEE----ESCCSSCEEEEEECCSCCSBSCEEEEEEEEEET--TSCCEEEEEEES------------
T ss_pred             EEecCCCC---CCCcee----eeccCCEEEEEEcCCccCCCCceeEEEEEEecC--CCCccEECcccc------------
Confidence            98876432   221110    01123344444              44444333  334555433221            


Q ss_pred             cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095         220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       220 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  256 (325)
                             ...|.|.++...+.|.|+|.|.|..|....
T Consensus       253 -------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~  282 (305)
T 2nzi_A          253 -------ETRYTVINLFGKTSYQFRVIAENKFGLSKP  282 (305)
T ss_dssp             -------SSEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred             -------CceEEecCCCCCCeEEEEEEEEeCCcccCC
Confidence                   137899999999999999999999886553

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.89  E-value=2e-22  Score=160.95  Aligned_cols=188  Identities=15%  Similarity=0.209  Sum_probs=132.7

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--e------------eCCCCCcEEEEecCCeEEEEEccCC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--K------------PATPNARVTIREKEDLRFLEISEVT  129 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~------------~~~~~~~~~~~~~~~~~~l~i~~~~  129 (325)
                      ..+.+...|....+.+|++++|.|.+.+.+.+.+.|+|..  .            ......++.........+|.|.+++
T Consensus        23 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  102 (237)
T 3sob_L           23 ADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ  102 (237)
T ss_dssp             -CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCC
Confidence            3456777788889999999999999988888899999842  1            1112346666655667889999999


Q ss_pred             CCCCeEEEEEEEeCCee-EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEec
Q psy1095         130 LEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK  208 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~  208 (325)
                      .+|+|.|+|.+.+..+. ......+.|...   ..+|.+........+..|+.++|.|.+.+.++..+.+.|++++..+.
T Consensus       103 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~  179 (237)
T 3sob_L          103 PEDFATYYCQQSYTTPPTFGQGTKVEIKRT---VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS  179 (237)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEECC---CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             hhhCeEEEEeeccCCceEEcCcEEEEEecC---CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCC
Confidence            99999999999876542 223345666542   24566665554444556889999999998554238999999998876


Q ss_pred             cCC-CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         209 LDS-DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       209 ~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      ... .........+..+...+.|.|.....+|.|.|+|.|.|.....
T Consensus       180 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          180 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence            431 0000000112223345789999999999999999999987544

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.89  E-value=4.9e-22  Score=155.45  Aligned_cols=175  Identities=21%  Similarity=0.305  Sum_probs=128.3

Q ss_pred             EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC-------------------CCcEEEEecCCeEEEEEccCC
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-------------------NARVTIREKEDLRFLEISEVT  129 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~  129 (325)
                      .+.|.+..+.+|+++.|.|...+.+.+.+.|++++.....                   ..++.+..   ..+|.|.+++
T Consensus         3 ~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~i~~v~   79 (208)
T 3r4d_A            3 TIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS---NGSLLFQMIT   79 (208)
T ss_dssp             EEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT---TSCEEECSCC
T ss_pred             cccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec---CCeEEEcccc
Confidence            4455566789999999999987788889999987542211                   11222221   1359999999


Q ss_pred             CCCCeEEEEEEEeCC-eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEec
Q psy1095         130 LEDAGLYTIKVENNY-GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK  208 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~  208 (325)
                      ..|+|.|+|.+.+.. +.....+.|.|...+   ..|.+......  +..|+.+.|.|.+.+.|   +.+.|++++..+.
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~~~~~--~~~g~~v~l~C~~~~~p---p~i~W~~~g~~l~  151 (208)
T 3r4d_A           80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPV---TQPFLQVTNTT--VKELDSVTLTCLSNDIG---ANIQWLFNSQSLQ  151 (208)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEEECCC---CCCEEEESCSS--CCTTCCEEEEEECSCTT---CEEEEEETTEECC
T ss_pred             ccCCeEEEEEEEcccCceeEEEEEEEeccCC---CCCEEecCCce--EeeCCCEEEEEECCCCC---CceEEEECCEeCC
Confidence            999999999999874 556677778887652   23555544433  88899999999998743   6899999999887


Q ss_pred             cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe-EEEEEE
Q psy1095         209 LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV  262 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v  262 (325)
                      .......  ...+      ..|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus       152 ~~~~~~~--~~~~------~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v  198 (208)
T 3r4d_A          152 LTERMTL--SQNN------SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI  198 (208)
T ss_dssp             CCSSEEE--ETTT------TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECC
T ss_pred             CCCCeEE--cCCC------CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeE
Confidence            5544322  1222      47999999999999999999999987654 344444

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.89  E-value=1.9e-21  Score=171.29  Aligned_cols=182  Identities=15%  Similarity=0.235  Sum_probs=118.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeCC-----------------CCCcEEEEec--CCeEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPAT-----------------PNARVTIREK--EDLRFLE  124 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~--~~~~~l~  124 (325)
                      .+..|....+.+|++++|.|.+.+.+  .+.+.|||+.  ....                 ...++.+..+  ++..+|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (475)
T 1iga_A            4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG   83 (475)
T ss_pred             eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence            34567778899999999999998754  5689999853  2110                 1235554432  3456899


Q ss_pred             EccCCCCCCeEEEEEEEeCCe------eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC-CCe
Q psy1095         125 ISEVTLEDAGLYTIKVENNYG------SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHD  197 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~  197 (325)
                      |.+++.+|+|.|.|.+.+..+      .......|.|....  ..+|.+..... ..+.+|+.+.|.|.+.+.++. .+.
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~  160 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS--PTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLS  160 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC--CcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceE
Confidence            999999999999999988654      12234566665321  12344443321 223689999999999987542 258


Q ss_pred             eEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       198 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      +.|++++........ .......+..+...+.|.|..+..+|.|.|+|.|.|..+.
T Consensus       161 v~W~~~~~~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  215 (475)
T 1iga_A          161 VTWSESGQGVTARNF-PPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  215 (475)
T ss_pred             EEEcCCCcccceEeC-CceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC
Confidence            999998743211100 0000011222334467999999999999999999998763

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.89  E-value=3e-22  Score=157.54  Aligned_cols=182  Identities=15%  Similarity=0.200  Sum_probs=126.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCC---eeEEeeCCeeCCCCC------------------cEEEEe---cCCeEEEEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPAP---WTSWSKDGKPATPNA------------------RVTIRE---KEDLRFLEI  125 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~~---~v~W~~~~~~~~~~~------------------~~~~~~---~~~~~~l~i  125 (325)
                      ..|+.+.+.+|++++|.|.+.+.|.+   .|+|+|++..+....                  ++....   .....+|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            45667789999999999999887765   489999875443211                  111111   122356999


Q ss_pred             ccCCCCCCeEEEEEEEeCCee-EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC
Q psy1095         126 SEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN  204 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~  204 (325)
                      .+++.+|+|.|.|.+.+..+. ......+.+...     ++..........+..|+.+.+.|.+.+.|+  +.+.|++++
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~--p~i~W~~~~  156 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVP-----PLPSLNPGPALEEGQGLTLAASCTAEGSPA--PSVTWDTEV  156 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC-----CCCEEEECSCEETTCCSEEEEEEEEEEBSC--CEEEEEESS
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEeee-----ccceeeeeeeeeeeeccccceeeeccCCcC--ceEEEEECC
Confidence            999999999999999775443 333344444433     122233334455677899999999999998  899999998


Q ss_pred             EEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         205 RLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      ..+......     .........+.|.|.++..+|.|.|+|.|.|..+.....+.+.|.
T Consensus       157 ~~~~~~~~~-----~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          157 KGTTSSRSF-----KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             CCEEEEEEE-----ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             cccccCceE-----ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            766532211     111222345689999999999999999999999887766666653

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.89  E-value=2e-22  Score=152.48  Aligned_cols=164  Identities=16%  Similarity=0.234  Sum_probs=123.4

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecC-CCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      +|.+...|....+.+|+++.|.|.+.+.| .+.+.|++++..+.....          .+.+.+++..|+|.|+|.+.+.
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~~   73 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQT   73 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETTS
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeCC
Confidence            46777888888899999999999998876 678999999998875421          2667789999999999999865


Q ss_pred             CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCc
Q psy1095         144 YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE  223 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  223 (325)
                      ..  ...+.|.|...      +.+.. .....+.+|+.+.|.|.+.+.++. +.+.|++++..+.....           
T Consensus        74 ~~--s~~~~l~v~~~------~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~-----------  132 (170)
T 3ry4_A           74 SL--SDPVHLTVLFE------WLVLQ-TPHLEFQEGETIMLRCHSWKDKPL-VKVTFFQNGKSQKFSHL-----------  132 (170)
T ss_dssp             BC--CCCEEEEEECC------SEEEE-CSCSEECTTCCEEEEEEEGGGCCE-EEEEEEETTEEEEEESS-----------
T ss_pred             Cc--eEeEEEEEECC------ceEec-CCCceeecCCeEEEEEECCCCCCC-ceEEEEECCeEccccCC-----------
Confidence            43  33466677654      22222 234567889999999999554433 78999999987653211           


Q ss_pred             ceeEEEEEeCCCCCCCCeEEEEEEEeCCCc-EEeEEEEEE
Q psy1095         224 NLVIARLKIPHVYPEDEGEFTCRVANELGE-VVTSACLIV  262 (325)
Q Consensus       224 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v  262 (325)
                         ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       133 ---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          133 ---DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             ---CCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ---CCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence               147999999999999999999999886 333445544

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=2e-22  Score=155.11  Aligned_cols=168  Identities=15%  Similarity=0.161  Sum_probs=121.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.|...|.. .+.+|++|+|.|.+.+ +.+.+.|+|++..+..... ..........|.|.+++.+|+|.|+|.+.+.
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   79 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence            46888888877 7999999999999865 4468999999876531100 0011234567999999999999999999876


Q ss_pred             CeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         144 YGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       144 ~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      .+..  ...+.|.|...   ..+|.+...+ ...+.+|+.++|.|.+.+ ++  +.+.|+|++..+...    ..  ...
T Consensus        80 ~~~~~~s~~~~l~V~~~---~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~--~~~~w~k~g~~~~~~----~~--~~~  146 (188)
T 1oll_A           80 ELWSEPSNLLDLVVTEM---YDTPTLSVHP-GPEVISGEKVTFYCRLDT-AT--SMFLLLKEGRSSHVQ----RG--YGK  146 (188)
T ss_dssp             TEECCCCCCEEEEEESC---SCCCEEEEES-CSEEETTCEEEEEEECSS-SC--SEEEEEEESSSCEEE----EE--ECS
T ss_pred             CCCCCCCCceEEEeccc---CCCCeEEECC-CCccccCCEEEEEEEcCC-CC--CEEEEEECCcccccc----cc--CCC
Confidence            5422  34566777643   1246665444 456889999999999764 33  689999998765431    00  111


Q ss_pred             CcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         222 KENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                          ....|.|.+++.+|+|.|+|.|.|..
T Consensus       147 ----~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          147 ----VQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             ----SEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             ----ceeEEEECCCCcCCCcEEEEEEEcCC
Confidence                34689999999999999999999865

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.89  E-value=1.3e-23  Score=165.08  Aligned_cols=183  Identities=18%  Similarity=0.237  Sum_probs=127.0

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +.. |....+.+|++++|.|.+.+.|.+.+.|+|++  ..+            ....++.+........|.|.+++.+|+
T Consensus         3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   81 (212)
T 1nfd_E            3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE   81 (212)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred             eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccC
Confidence            344 77788999999999999888777889999852  221            013466666556667899999999999


Q ss_pred             eEEEEEEEeC-Cee--EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC
Q psy1095         134 GLYTIKVENN-YGS--VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD  210 (325)
Q Consensus       134 G~Y~C~~~~~-~~~--~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~  210 (325)
                      |.|+|.+.+. .+.  ......|.|...+.  .+|.+........+..|+.+.|.|.+.+.+++.+.+.|++++..+...
T Consensus        82 G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~--~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  159 (212)
T 1nfd_E           82 AAYYCLSSYGDNNDLVFGSGTQLTVLRGPK--SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG  159 (212)
T ss_dssp             SEEEEEEEETTTTEEEECCCEEEEEECCCC--BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             EEEEEEEEcccCcccccCCceEEEEccCCC--CCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence            9999999862 221  12234566643321  346665544444456799999999999885433799999999988654


Q ss_pred             CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         211 SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      ....... ..+..+...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus       160 ~~~~~~~-~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          160 VKTTKPS-KQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             CBCCCCB-CSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             eecCCce-ecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            2211110 111112334679999999999999999999987653

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.89  E-value=9.7e-23  Score=170.57  Aligned_cols=183  Identities=17%  Similarity=0.190  Sum_probs=115.2

Q ss_pred             CCCeeEecCCceEecCC--CeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcE--EEEecCC----eEEEEEccCCCCCC
Q psy1095          64 SSPRFYAVPHNKICDLG--DTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARV--TIREKED----LRFLEISEVTLEDA  133 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g--~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~--~~~~~~~----~~~l~i~~~~~~d~  133 (325)
                      .+|.+...+.......|  +++.|.|.+.+. | .+.|+|+|+|..+......  .... ++    ...|.|.+...+|.
T Consensus         6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~-~g~~~~~s~l~i~~~~~~d~   84 (323)
T 2wqr_A            6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQE-GELASTQSELTLSQKHWLSD   84 (323)
T ss_dssp             CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEE-TTEEEEEEEEEEEHHHHHTT
T ss_pred             CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCcc-CCcEEEEEEEEEcHHHcCCC
Confidence            46666555443333344  699999999885 4 4789999999988654321  1112 22    13477777777899


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEECCCcccCCCee-eecCcCeeEecCCcEEEEEEEEecCCCCC---eeEEeeCCEEecc
Q psy1095         134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKV-LNGLENLRCCDGDSVTFECQVQVVPPNDH---DISWFRNNRLIKL  209 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~-~~~~~~~~v~~g~~v~l~C~~~~~~~~~~---~~~W~~~~~~~~~  209 (325)
                      |.|+|.+.|..+.....+.+.+..   ....|.+ ...+....+.+|+.+.|.|.+.+.++. +   .+.|++++.....
T Consensus        85 g~Y~C~a~n~~~~~~~~~~~~~~~---~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~-p~~~~i~W~k~~g~~~~  160 (323)
T 2wqr_A           85 RTYTCQVTYQGHTFEDSTKKCADS---NPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPS-KGTVQLTWSRASGKPVN  160 (323)
T ss_dssp             CCEEEEEEETTEEEEEEECCCCCS---SGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCC-SSCCEEEEEETTCCCCC
T ss_pred             CcEEEEEEeCCCCcceeeecCCCC---CCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCC-CCceEEEEEECCCcccc
Confidence            999999999876554333221111   1122333 333333456789999999999987543 4   8999997533322


Q ss_pred             CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ... .......+......+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       161 ~~~-~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~  202 (323)
T 2wqr_A          161 HST-RKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL  202 (323)
T ss_dssp             CCC-CEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             ccc-CCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCC
Confidence            111 111001111222456899999999999999999999764

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.89  E-value=1.2e-22  Score=155.81  Aligned_cols=161  Identities=17%  Similarity=0.227  Sum_probs=120.9

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCee--CCC------------CCcEEEEe---cCCeEEEEEccCCCCCCeEE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATP------------NARVTIRE---KEDLRFLEISEVTLEDAGLY  136 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~--~~~------------~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y  136 (325)
                      .+.+.+|+++.|.|.+.+.|.+.+.|++++..  +..            ..++....   .++..+|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45688999999999998888899999998752  110            11222221   22345699999999999999


Q ss_pred             EEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceE
Q psy1095         137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE  216 (325)
Q Consensus       137 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  216 (325)
                      +|.+.+..+    .+.|.|...         . .+....+.+|+.++|.|.+.+.|.  +.+.|++++..+..       
T Consensus        84 ~C~~~~~~~----~~~l~V~~~---------~-~~~~~~v~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~-------  140 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFGL---------T-ANSDTHLLQGQSLTLTLESPPGSS--PSVQCRSPRGKNIQ-------  140 (184)
T ss_dssp             EEEETTEEE----EEEEEEEEE---------E-ESSCSEEETTCCEEEEEECCTTCC--CEEEEECTTSCEEE-------
T ss_pred             EEEEEcCCC----cEEEEEEEe---------c-CCCCceeecCCCEEEEEEcCCCCC--CEEEEEeCCCcccc-------
Confidence            999976543    344555421         1 123446789999999999988876  89999998765421       


Q ss_pred             EEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeC
Q psy1095         217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK  266 (325)
Q Consensus       217 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~  266 (325)
                        ..       ..|.|.+++.+|+|.|+|.|.|..+.....+.|.|...+
T Consensus       141 --~~-------~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          141 --GG-------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             --ES-------SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             --Cc-------eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence              22       489999999999999999999999988888888885544

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.88  E-value=3.5e-22  Score=161.14  Aligned_cols=188  Identities=15%  Similarity=0.153  Sum_probs=129.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecC-----CCeeEEeeCCe--eC------------CCCCcEEEEecCCeEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQP-----APWTSWSKDGK--PA------------TPNARVTIREKEDLRFLE  124 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-----~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~  124 (325)
                      ..+.+...|....+.+|++++|.|.+.+.+     .+.+.|+|++.  ..            ....++.+...++..+|.
T Consensus        33 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~  112 (252)
T 3bkj_L           33 SDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLR  112 (252)
T ss_dssp             -CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             cccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEE
Confidence            355667778888899999999999998877     58899998541  11            112466665556667899


Q ss_pred             EccCCCCCCeEEEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC
Q psy1095         125 ISEVTLEDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN  203 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~  203 (325)
                      |.+++.+|+|.|.|.+.+..+.. .....|.|...   ..+|.+........+..|+.++|.|.+.+.+++...+.|+++
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  189 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRA---DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID  189 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCC---CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCC---CcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEEC
Confidence            99999999999999998765422 22345666542   124666554433334478999999999986553248999999


Q ss_pred             CEEeccCCCCceEEE-ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         204 NRLIKLDSDMKPEVQ-VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       204 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      +..+........... ..+..+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus       190 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          190 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             TEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            988754300000000 111223345789999999999999999999976543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.88  E-value=4.6e-22  Score=156.65  Aligned_cols=180  Identities=16%  Similarity=0.186  Sum_probs=122.0

Q ss_pred             CCceEecCCCeEEEEEEE-EecC-CCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCCeE
Q psy1095          72 PHNKICDLGDTVRFQCSV-TGQP-APWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDAGL  135 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~-~~~p-~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  135 (325)
                      |....+.+|++++|.|.+ .+.+ .+.+.|+|++  ..+            ....++.........+|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            667789999999999995 4332 5789999853  111            11346666555666789999999999999


Q ss_pred             EEEEEEeCCe--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC
Q psy1095         136 YTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM  213 (325)
Q Consensus       136 Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~  213 (325)
                      |.|.+.+..+  .......|.|...   ..+|.+...........|+.++|.|.+.+.+++...+.|++++..+......
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  163 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRT---VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE  163 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCC---CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeE
Confidence            9999998765  2223345666432   1346665543333334688999999999855432489999999987643100


Q ss_pred             ceEEEe-cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         214 KPEVQV-DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       214 ~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      ...... .+..+...+.|.|..+..+|+|.|+|.|.|.....
T Consensus       164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          164 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             ecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            000001 11223345689999999999999999999987543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.88  E-value=1.3e-22  Score=154.40  Aligned_cols=155  Identities=14%  Similarity=0.273  Sum_probs=115.7

Q ss_pred             eEecCCCeEEEEEEEEe--cCCCeeEEeeCCeeCC----------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          75 KICDLGDTVRFQCSVTG--QPAPWTSWSKDGKPAT----------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      +.+.+|++++|.|...+  .+.+.+.|+|++..+.          ...++.+...   .+|.|.+++.+|+|.|+|.+.|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~---gsL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT---SCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCC---CcEEEcccccccCEEEEEEEEe
Confidence            45789999999995322  4567899999986542          2345555322   2499999999999999999999


Q ss_pred             CCeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec
Q psy1095         143 NYGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD  220 (325)
Q Consensus       143 ~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  220 (325)
                      ..+..  ...+.|.|...+   ..|.+.        ..+..+.|.|.+.+.|+  +.+.|++++..+..+..        
T Consensus        83 ~~g~~~~~~~~~l~V~~~~---~~p~i~--------~~~~~v~L~C~~~g~p~--p~i~W~~~g~~l~~~~~--------  141 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMV---SKPMIY--------WECSNATLTCEVLEGTD--VELKLYQGKEHLRSLRQ--------  141 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCC---CCCEEE--------EETTTTEEEEECSSCSS--CEEEEEETTEEEEEESS--------
T ss_pred             CCCCEEEEEEEEEEEeCCC---CCCEEE--------ecCCcEEEEEEecCCCC--cEEEEEECCEECCCCCc--------
Confidence            88875  666778877642   224332        23456999999999888  89999999988764322        


Q ss_pred             CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       221 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                               +.|.+++.+|+|.|+|.|.|..|.....+.|.+
T Consensus       142 ---------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          142 ---------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             ---------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             ---------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence                     334467799999999999999998887766543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.88  E-value=1.5e-20  Score=145.68  Aligned_cols=153  Identities=23%  Similarity=0.326  Sum_probs=115.6

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............+    ....|.|.+++.+|+|.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~   76 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPK--PIVKWYRQGKEIIADGLKYRIQEFKG----GYHQLIIASVTDDDATV   76 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSC--CEEEEEETTEECCCCSSSEEEEEETT----TEEEEEECSCCGGGCSE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCC--CEEEEEECCEECccCCCcEEEEEcCC----CEEEEEECcCCHHhCEE
Confidence            3577877778889999999999999998887  89999999998875432222211222    34589999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeCC-----------------------------------------eecCCCCceEEEEe
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVKG-----------------------------------------KDLTSDGRLNIITV  281 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~~-----------------------------------------~~~~~~~~~~~~~~  281 (325)
                      |+|.+.|..+.....+.|.|...+.                                         ..+..+++......
T Consensus        77 Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  156 (197)
T 2j8h_A           77 YQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT  156 (197)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC
T ss_pred             EEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc
Confidence            9999999988877777766643221                                         11112222333333


Q ss_pred             CCEEEEEEcC-CCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         282 GGTSVLTIED-ITGDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       282 ~~~~~l~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                      .....|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       157 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             SSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            4556899999 999999999999999999999999999864

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.88  E-value=1.7e-21  Score=155.94  Aligned_cols=181  Identities=17%  Similarity=0.206  Sum_probs=124.0

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecC----CCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQP----APWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEV  128 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~  128 (325)
                      .+...|....+.+|++|+|.|.+.+.|    .+.+.|+|+.  ..+            ....++.+...+...+|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            456778888899999999999998887    7889999852  211            0134666655566678999999


Q ss_pred             CCCCCeEEEEEEEeCCee-EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CE
Q psy1095         129 TLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NR  205 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~  205 (325)
                      +.+|+|.|+|.+.+..+. ......|.|...+....++.+...+....+.+|+.++|.|.+.+.|.+.+.+.|+++  +.
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~  162 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ  162 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence            999999999999887543 233456777654321122334444556778899999999999988742268999995  22


Q ss_pred             Eec-----c--C--------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         206 LIK-----L--D--------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       206 ~~~-----~--~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      .+.     .  .        ...+.....+  .......|.|.+++.+|+|.|+|.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          163 GLEWIGRIDPANGNSKYVPKFQGKATITAD--TSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CCEEEEEEETTTTEEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CcEEEEEEcccCCccccCccccccEEEEEc--ccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            110     0  0        0001111111  001246799999999999999999985

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.88  E-value=9.1e-21  Score=146.49  Aligned_cols=151  Identities=25%  Similarity=0.450  Sum_probs=114.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............+    ....|.|.+++.+|+|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y   78 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPV--PEVSWFRDGQVISTSTLPGVQISFSD----GRAKLTIPAVTKANSGRY   78 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESC--CEEEEEESSSBCCTTTSTTCEEEEET----TEEEEEESSCCGGGCEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCC--CEEEEEECCEEcccccCCceEEEeCC----CEEEEEECCCCcccCEEE
Confidence            466677677788999999999999999887  79999999988766542222222222    347899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEe---------------------------------------eCCeecCCCCceEEEEeCCE
Q psy1095         244 TCRVANELGEVVTSACLIVDV---------------------------------------VKGKDLTSDGRLNIITVGGT  284 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~---------------------------------------~~~~~~~~~~~~~~~~~~~~  284 (325)
                      +|.+.|..+.......|.|..                                       ..+..+..+.+......+..
T Consensus        79 ~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  158 (194)
T 2a38_A           79 SLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL  158 (194)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTE
T ss_pred             EEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCE
Confidence            999999888777666666532                                       11222222333334444455


Q ss_pred             EEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEe
Q psy1095         285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       285 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  320 (325)
                      ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus       159 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            589999999999999999999999999999999885

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.88  E-value=1.9e-21  Score=170.51  Aligned_cols=182  Identities=15%  Similarity=0.267  Sum_probs=122.9

Q ss_pred             EecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee---C--------------CCCCcEEEEec--CCeEEEEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP---A--------------TPNARVTIREK--EDLRFLEI  125 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~---~--------------~~~~~~~~~~~--~~~~~l~i  125 (325)
                      ...|....+.+|++++|.|.+.+.+  .+.+.|||+  +..   +              ....++.+..+  +....|.|
T Consensus         4 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (457)
T 1hzh_H            4 LVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL   83 (457)
T ss_dssp             EEECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEE
Confidence            3456667899999999999998876  678999984  221   1              01246655442  34578999


Q ss_pred             ccCCCCCCeEEEEEEEeCCe------------eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCC
Q psy1095         126 SEVTLEDAGLYTIKVENNYG------------SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPP  193 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~~------------~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~  193 (325)
                      .+++.+|+|.|+|.+.+..+            .......|.|...+  ..+|.+........+.+|+.+.|.|.+.+..+
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  161 (457)
T 1hzh_H           84 RSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  161 (457)
T ss_dssp             CSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC--CBCCEEEEECCCSCCCTTCCEEEEEEEESBBS
T ss_pred             CCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCC--CCCCeEEecCccccccCCCcEEEEEEEeEEeC
Confidence            99999999999999987654            12234566665421  12455544443445678999999999998743


Q ss_pred             CCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         194 NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       194 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      ..+.+.|++++..+....  .......+..+...+.|.|.++..+| |.|+|.|.|..+...
T Consensus       162 ~~~~v~W~k~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~  220 (457)
T 1hzh_H          162 EPVTVSWNSGALTSGVHT--FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  220 (457)
T ss_dssp             CCCEEEETTTTBCTTEEE--EEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEE
T ss_pred             CCeEEEEEeCCEeccceE--cCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcc
Confidence            227899999986542110  01111122233344689999999999 999999999776543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=8.7e-21  Score=152.48  Aligned_cols=186  Identities=15%  Similarity=0.260  Sum_probs=124.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeC-----------------CCCCcEEEEec--CCeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPA-----------------TPNARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~  127 (325)
                      .|.+..+.+|++++|.|.+.+.|  .+.+.|+|+.  ...                 ....++.+..+  .+..+|.|.+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (247)
T 2ghw_B            8 QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNS   87 (247)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECc
Confidence            44567899999999999999876  6789999842  110                 11246665542  4467899999


Q ss_pred             CCCCCCeEEEEEEEeCCee--EEEEEEEEEECCCc---------ccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCC
Q psy1095         128 VTLEDAGLYTIKVENNYGS--VEATARLEIMDPRA---------IISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH  196 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~---------~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~  196 (325)
                      ++.+|+|.|+|.+.+..+.  ......|.|...+.         ...++.+...+....+.+|+.++|.|.+.+.++  +
T Consensus        88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~--~  165 (247)
T 2ghw_B           88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVR--S  165 (247)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCT--T
T ss_pred             CCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCcc--c
Confidence            9999999999999987332  22345677765421         012344555555667889999999999998887  7


Q ss_pred             eeEEee--CCEEecc----------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE-eEEEEEE
Q psy1095         197 DISWFR--NNRLIKL----------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV-TSACLIV  262 (325)
Q Consensus       197 ~~~W~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v  262 (325)
                      .+.|++  ++..+..          ....+......+    ....|.|.+++.+|+|.|+|.|.+...... ....|.|
T Consensus       166 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V  240 (247)
T 2ghw_B          166 NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSG----TDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEV  240 (247)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSS----SEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCC----CeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEE
Confidence            899999  4443310          001111111111    346799999999999999999988543222 2344555

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.87  E-value=8.2e-22  Score=156.75  Aligned_cols=175  Identities=19%  Similarity=0.283  Sum_probs=124.5

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC-CeeEEeeCCeeCC---------CCCcE--EEE----------ecCCeEEEEEcc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPA-PWTSWSKDGKPAT---------PNARV--TIR----------EKEDLRFLEISE  127 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~~~~~~~~---------~~~~~--~~~----------~~~~~~~l~i~~  127 (325)
                      ..|....+.+|+++.|.|.+.+.+. +.+.|++++....         ....+  ++.          ... ...|.|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~L~i~~   83 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS-QGRLVLAE   83 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECT-TCCEEESS
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCC-CceEEEcc
Confidence            4566778999999999999998885 8999998654321         01101  111          111 12399999


Q ss_pred             CCCCCCeEEEEEEEeCC-eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcE-EEEEEE-EecCCCCCeeEEeeCC
Q psy1095         128 VTLEDAGLYTIKVENNY-GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV-TFECQV-QVVPPNDHDISWFRNN  204 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v-~l~C~~-~~~~~~~~~~~W~~~~  204 (325)
                      ++.+|+|.|+|.+.+.. +.....+.|.|...+.   .|.+...+....+.+|+.+ .|.|.+ .+.|.  +.+.|++++
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~---~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~--p~i~W~~~~  158 (231)
T 2pet_A           84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPE---ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA--PKITWYRNG  158 (231)
T ss_dssp             CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC---CCEEEECCSSCCTTCCSEEEEEEEEEEEEBSC--CEEEEEETT
T ss_pred             cCcccCceEEEEEEecCCCceEEEEEEEEEecCC---CcEEecCCcceeecCCCceEEEEEEeECcccC--CEEEEEECC
Confidence            99999999999999886 6777888888887643   3666666555667789988 999999 78887  899999999


Q ss_pred             EEeccCC----CCceEEE---ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         205 RLIKLDS----DMKPEVQ---VDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       205 ~~~~~~~----~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      ..+....    .......   .....+...+.|.|.....+|.|.|+|.|.|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          159 QRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             EECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            9887554    2111110   11122333467888866666799999999994

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.87  E-value=3.2e-21  Score=150.08  Aligned_cols=172  Identities=15%  Similarity=0.151  Sum_probs=119.2

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE-EEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.|...|. ..+.+|++++|.|.+. .+.+.+.|+|++..+...... ..........|.|.+++.+|+|.|+|.+.+
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            5778887776 6688999999999986 477899999998765321110 011112345799999999999999999986


Q ss_pred             CC-----eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEE
Q psy1095         143 NY-----GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV  217 (325)
Q Consensus       143 ~~-----~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  217 (325)
                      ..     ......+.|.|....   .+|.+...+. ..+.+|+.++|.|.+.+ ++  +.+.|+|++..+........  
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~~~---~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~--~~~~w~k~g~~~~~~~~~~~--  155 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIGLY---EKPSLSAQPG-PTVLAGENVTLSCSSRS-SY--DMYHLSREGEAHERRLPAGP--  155 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEECSS---CCCEEEEESC-SEECTTCEEEEEEEESS-CC--SEEEEEETTCSSCEEEECEE--
T ss_pred             CCCCccccCCCCCEEEEeeccC---CCCceecCCC-CccCCCCeEEEEEeCCC-CC--ceEEEEECCcccCccccccc--
Confidence            42     122345667776542   3466665544 46889999999999875 34  78999999876543211100  


Q ss_pred             EecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       218 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...+   .....|.|.+++  |+|.|+|.|.+..
T Consensus       156 ~~~~---~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          156 KVNG---TFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EETT---EEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             ccCC---ceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            0111   124689999998  9999999998753

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.87  E-value=1.3e-23  Score=183.01  Aligned_cols=179  Identities=15%  Similarity=0.220  Sum_probs=118.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeC----C-------------CCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPA----T-------------PNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~----~-------------~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..+....+.+|++++|.|.+.+.+  .+.+.|+|++  ..+    .             ...++.+..+  ++..+|.|.
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS   83 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred             ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence            456667899999999999998754  6789999863  211    0             0235544332  234579999


Q ss_pred             cCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEE
Q psy1095         127 EVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRL  206 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~  206 (325)
                      +++.+|+|.|+|.+.+..+.......|.|....  ..+|.+........+.+|+.+.|.|.+.+.++....+.|++++..
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~  161 (434)
T 1igy_B           84 SLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  161 (434)
T ss_dssp             SBCGGGCSEECCCCSSSSCCCCCCEECEECCSC--CBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBC
T ss_pred             CCChHHCEEEEEEEEccccccCCceEEEEccCC--CCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcC
Confidence            999999999999998754333344566665321  123444433333345789999999999987332139999999875


Q ss_pred             eccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         207 IKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      +........   .....+...+.|.|.++..+| |.|+|.|.|..+..
T Consensus       162 ~~~~~~~~~---~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~  205 (434)
T 1igy_B          162 SGVHTFPAV---LQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST  205 (434)
T ss_dssp             SSEEECCCE---ECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC
T ss_pred             CCeEecCce---ecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc
Confidence            321100000   111223344679999999889 99999999988763

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.87  E-value=1.9e-22  Score=160.89  Aligned_cols=187  Identities=14%  Similarity=0.194  Sum_probs=124.3

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecC-CC-eeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQP-AP-WTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVT  129 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~-~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~  129 (325)
                      +.+.. |....+.+|++++|.|.+.+.+ .+ .+.|+|++  ..+            ....++.........+|.|.+++
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   99 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR   99 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence            34444 7777899999999999998754 34 69999863  211            11246665555566789999999


Q ss_pred             CCCCeEEEEEEEeCCee---EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEE
Q psy1095         130 LEDAGLYTIKVENNYGS---VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRL  206 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~  206 (325)
                      .+|+|.|+|.+.+..+.   ......|.|...+.  .+|.+........+..|+.++|.|.+.+.+++.+.+.|++++..
T Consensus       100 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~--~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  177 (234)
T 2j6e_L          100 SEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPK--AAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAP  177 (234)
T ss_dssp             STTCSEEEEEEEETTTTEEEECCCBCCCBCCCCC--CCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEE
T ss_pred             HHHCEEEEEEEEcCCcceeEecCCEEEEEecCCC--CCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEE
Confidence            99999999999987662   22234455533211  23444443333333468899999999986653258999999998


Q ss_pred             eccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         207 IKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      +.............+..+...+.|.|.++..+|.|.|+|.|.|......
T Consensus       178 l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  226 (234)
T 2j6e_L          178 VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  226 (234)
T ss_dssp             CCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred             CCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence            7543110000001111223446899999999999999999999876543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.87  E-value=5.1e-21  Score=151.23  Aligned_cols=181  Identities=15%  Similarity=0.231  Sum_probs=120.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC-----CCeeEEeeCCeeC---------CC------CCcEEEEe---cCCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP-----APWTSWSKDGKPA---------TP------NARVTIRE---KEDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p-----~~~v~W~~~~~~~---------~~------~~~~~~~~---~~~~~~l~i~  126 (325)
                      .++..+.+.+|+++.|.|.+.+.|     .+.+.|++++..+         ..      ..+..+..   ..+..+|.|.
T Consensus         6 ~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            6 VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             CSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             cCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            345566788999999999987766     3489999975322         10      12333321   1245689999


Q ss_pred             cCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC-CE
Q psy1095         127 EVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN-NR  205 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-~~  205 (325)
                      +++.+|+|.|+|.+.+ .+.....+.|.|..++.   .+....   ...+..|+.+.|.|.+.|.|.  +.+.|+++ +.
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~---~~~~~~---~~~~~~g~~v~L~C~~~g~P~--p~i~W~~~~g~  156 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAPYN---KINQRI---LVVDPVTSEHELTCQAEGYPK--AEVIWTSSDHQ  156 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCC---CCEEEE---EEEETTTTEEEEEEEEEEBSC--CEEEEEETTCC
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEECCCC---CCCcee---eeeecCCCcEEEEEEecCCCC--CeEEEEECCCc
Confidence            9999999999999998 55566678888876532   222211   124568999999999999887  89999998 55


Q ss_pred             EeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         206 LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      .+......... ..........+.|.   +..+|.|.|+|.|.|..+.....+.|.|.
T Consensus       157 ~~~~~~~~~~~-~~~~~~~~~~~~l~---v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          157 VLSGKTTTTNS-KREEKLFNVTSTLR---INTTTNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             EECCEEEEEEC-C----CEEEEEEEE---EECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             eecCccceEEE-cCCCCCEEEEEEEE---EeccCCcEEEEEEEeCccceeeEEEEEec
Confidence            44322111000 01111111223333   44689999999999999999888888773

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.87  E-value=6.7e-21  Score=150.29  Aligned_cols=183  Identities=16%  Similarity=0.231  Sum_probs=122.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeCC-----------------CCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPAT-----------------PNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..|.+..+.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                 ...++.+...  ....+|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN   84 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence            456677899999999999998765  688999986  32210                 1235555432  345689999


Q ss_pred             cCCCCCCeEEEEEEEeCCe----eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEe-cCCCCC-eeEE
Q psy1095         127 EVTLEDAGLYTIKVENNYG----SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV-VPPNDH-DISW  200 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~-~~~W  200 (325)
                      +++.+|+|.|.|.+.+..+    .......|.|...+  ..+|.+........+..|+.+.|.|.+.+ .|.  + .+.|
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~--p~~v~W  160 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE--PVTVTW  160 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC--CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSS--CCEEEE
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEecCC--CCCCeEEEecCccccccCCeEEEEEEcccccCC--CeEEEE
Confidence            9999999999999998752    12234566766531  13455554443345678999999999998 666  6 9999


Q ss_pred             eeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095         201 FRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL  260 (325)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  260 (325)
                      ++++..+....... .  .....+...+.|.|.... .|.|.|+|.|.|..+.......+
T Consensus       161 ~~~g~~~~~~~~~~-~--~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          161 NSGSLSSGVHTFPA-V--LQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             GGGTBCTTEEECCC-E--ESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEEC
T ss_pred             EeCCcccceEecCC-c--ccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEec
Confidence            99987642111111 0  111222344678995444 46699999999988776544433

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.87  E-value=3.1e-20  Score=143.78  Aligned_cols=151  Identities=25%  Similarity=0.432  Sum_probs=116.0

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.........  ..+    ....|.|.+++.+|+|.|
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~--~~~----~~~~L~i~~~~~~d~G~Y   78 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPL--PDIKWYRFGKELIQSRKYKMS--SDG----RTHTLTVMTEEQEDEGVY   78 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESC--CEEEEEETTEEECCCSSEEEE--ESS----SEEEEEEECCSGGGCEEE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCC--CEEEEEECCEECCCCccEEEE--eCC----CEEEEEEecCCccCCEEE
Confidence            466677777788999999999999999887  899999999988755443332  333    346899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEeeCC---------------------------------------eecCCCCceEEEEeCCE
Q psy1095         244 TCRVANELGEVVTSACLIVDVVKG---------------------------------------KDLTSDGRLNIITVGGT  284 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~~~~---------------------------------------~~~~~~~~~~~~~~~~~  284 (325)
                      +|.+.|..+.......|.|...+.                                       ..+..+.+.........
T Consensus        79 ~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~  158 (197)
T 3lcy_A           79 TCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHY  158 (197)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSE
T ss_pred             EEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCE
Confidence            999999988877776666643322                                       12222223333333444


Q ss_pred             EEEEEcCCCC-CCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095         285 SVLTIEDITG-DDSGKYQVHVSNQHGSDSCYASVAVEGR  322 (325)
Q Consensus       285 ~~l~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  322 (325)
                      ..|.|.++.. +|+|.|+|.|.|..|..+..+.|.|.++
T Consensus       159 ~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~k  197 (197)
T 3lcy_A          159 THLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK  197 (197)
T ss_dssp             EEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             EEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEecC
Confidence            6899999995 8999999999999999999999999864

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.87  E-value=1e-21  Score=159.88  Aligned_cols=190  Identities=17%  Similarity=0.258  Sum_probs=122.6

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEE---ecCCCeeEEeeCCeeCCCC------------------CcEEEEe--cCCeE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVT---GQPAPWTSWSKDGKPATPN------------------ARVTIRE--KEDLR  121 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~---~~p~~~v~W~~~~~~~~~~------------------~~~~~~~--~~~~~  121 (325)
                      .+.+...+....+.+|+++.|.|.+.   +.+.+.+.|++++......                  .++.+..  .....
T Consensus         5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             ccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence            35566777788899999999999987   6677889999965433221                  2332211  12235


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCee--EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEE---ecCCCCC
Q psy1095         122 FLEISEVTLEDAGLYTIKVENNYGS--VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ---VVPPNDH  196 (325)
Q Consensus       122 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~---~~~~~~~  196 (325)
                      +|.|.+++.+|+|.|+|.+.+..+.  ....+.|.|...     .|      ....+.+|+.+.|.|.+.   +.|.  +
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~p------~~~~v~~G~~v~L~C~~~~~~~~p~--~  151 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-----EP------RDLRVRVGDTTQMRCSIQSTEEKRV--T  151 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-----CC------SEEEEETTCCEEECCBCEESSSSCC--C
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-----CC------CccccccCCcEEEEEEecCCCCCCc--c
Confidence            6999999999999999999886543  344555555421     12      245688999999999994   4455  8


Q ss_pred             eeEEeeCCEEe-c-----------------cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         197 DISWFRNNRLI-K-----------------LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       197 ~~~W~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      .+.|++++... .                 ....+.......+........|.|.+++.+|+|.|+|.|.|..+.....+
T Consensus       152 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~  231 (268)
T 3mj6_A          152 KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTI  231 (268)
T ss_dssp             EEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEE
Confidence            99999943211 0                 00111100111111112345899999999999999999999999888888


Q ss_pred             EEEEEeeCC
Q psy1095         259 CLIVDVVKG  267 (325)
Q Consensus       259 ~l~v~~~~~  267 (325)
                      .|.|...++
T Consensus       232 ~l~V~~~~p  240 (268)
T 3mj6_A          232 VLHVVQDEF  240 (268)
T ss_dssp             EEEEECC--
T ss_pred             EEEEEcCCC
Confidence            888854443

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.87  E-value=9.9e-21  Score=151.67  Aligned_cols=182  Identities=15%  Similarity=0.136  Sum_probs=119.5

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---C---------CCCCcEEEEecCCeEEEEEccCCCCC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---A---------TPNARVTIREKEDLRFLEISEVTLED  132 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d  132 (325)
                      .+...|....+.+|++++|.|.+.+.|.+.+.|+|+.  ..   +         ....++.+...+...+|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence            4667788889999999999999998888899999853  11   1         01346666555566789999999999


Q ss_pred             CeEEEEEEEeCCee-EEEEEEEEEECCCcc-------cCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC
Q psy1095         133 AGLYTIKVENNYGS-VEATARLEIMDPRAI-------ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN  204 (325)
Q Consensus       133 ~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~  204 (325)
                      +|.|.|.+.+..+. ......|.|...+..       ...+.+...+....+.+|+.++|.|.+.+.+.+.+.+.|++++
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~  162 (242)
T 2znx_A           83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF  162 (242)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence            99999999876432 123346666554310       0112223333345688999999999999876322789999842


Q ss_pred             --EEec------cCC--------CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         205 --RLIK------LDS--------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       205 --~~~~------~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                        ..+.      ...        ..+.....+.  ......|.|.+++.+|+|.|.|.|.|.
T Consensus       163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDT--SKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             TTSCEEEEEEECTTSCEEECGGGTTCEEEEEET--TTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCCCcEEEEEEecCCccccCccccCcEEEEecC--CCCEEEEEECCCCcCcCEEEEEeccCC
Confidence              2211      000        1111111110  013468999999999999999999874

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.87  E-value=1.2e-20  Score=145.73  Aligned_cols=161  Identities=17%  Similarity=0.275  Sum_probs=113.7

Q ss_pred             cCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCC---CC---------------CcEEEEecCCeEEEEEccCCCC
Q psy1095          71 VPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPAT---PN---------------ARVTIREKEDLRFLEISEVTLE  131 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~---~~---------------~~~~~~~~~~~~~l~i~~~~~~  131 (325)
                      .|..+.+.+|++|+|.|.+.+ .+.+.+.|++++..+.   ..               .++.+.   ...+|.|.+++.+
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~   80 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKME   80 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGG
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcc
Confidence            456677899999999999865 4557899999876442   10               122322   2356999999999


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCC-cEEEEEEEEecCCCCCeeEEeeCCEEeccC
Q psy1095         132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD-SVTFECQVQVVPPNDHDISWFRNNRLIKLD  210 (325)
Q Consensus       132 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~-~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~  210 (325)
                      |+|.|.|.+.+..+.....+.|.|...+.   .|.+....  .....|. .+.|.|.+.+.++. +.+.|++++..+...
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~---~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~-p~i~W~~~g~~l~~~  154 (193)
T 2if7_A           81 DTGSYRAQISTKTSAKLSSYTLRILRQLR---NIQVTNHS--QLFQNMTCELHLTCSVEDADDN-VSFRWEALGNTLSSQ  154 (193)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCCE---EEEEEECC--C---CSSEEEEEEEEEESCCTT-CEEEEEETTEEEESS
T ss_pred             cCceEEEEEEecCCCeEEEEEEEEEccCC---CCeEecCc--eeecCCCceEEEEEEEecCCCc-eEEEEEeCCEEcCCC
Confidence            99999999998887666678888876522   24444332  1233465 79999999985533 899999998865321


Q ss_pred             CCCceEEEecCCcceeEEEEEeCCCCCC-CCeEEEEEEEeCCCcEEeE
Q psy1095         211 SDMKPEVQVDSKENLVIARLKIPHVYPE-DEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~~~~  257 (325)
                                       ..|.|.....+ |.|.|+|.|.|..+.....
T Consensus       155 -----------------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          155 -----------------PNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             -----------------SEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             -----------------CeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence                             14566544444 8999999999999887543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.86  E-value=6.4e-21  Score=155.82  Aligned_cols=185  Identities=16%  Similarity=0.159  Sum_probs=122.6

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe-----eC---------CCCCcEEEEecCCeEEEEEccCC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK-----PA---------TPNARVTIREKEDLRFLEISEVT  129 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~-----~~---------~~~~~~~~~~~~~~~~l~i~~~~  129 (325)
                      ..+.+...|....+.+|++++|.|.+.+.|.+.+.|+|++.     .+         ....++.+...+...+|.|.+++
T Consensus        11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   90 (276)
T 3auv_A           11 GDIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ   90 (276)
T ss_dssp             -CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             cceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCC
Confidence            34567778888899999999999999988889999998542     11         11346666655666789999999


Q ss_pred             CCCCeEEEEEEEeCCee-EEEEEEEEEECCCcc--------cCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEE
Q psy1095         130 LEDAGLYTIKVENNYGS-VEATARLEIMDPRAI--------ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISW  200 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~--------~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W  200 (325)
                      .+|+|.|.|.+.+..+. ......|.|...+..        ..++.+...+....+.+|+.++|.|.+.+.++..+.+.|
T Consensus        91 ~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W  170 (276)
T 3auv_A           91 PEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHW  170 (276)
T ss_dssp             GGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred             hhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEE
Confidence            99999999999886442 222345566543210        011222333456778899999999999987642378999


Q ss_pred             eeCC--EEe---c------------cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         201 FRNN--RLI---K------------LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       201 ~~~~--~~~---~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      ++++  ..+   .            .....+.....++  ......|.|.+++.+|+|.|+|.+.|.
T Consensus       171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADT--SKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecC--CCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            9963  111   0            0001111111110  012358999999999999999999997

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.86  E-value=4.2e-20  Score=148.58  Aligned_cols=184  Identities=17%  Similarity=0.213  Sum_probs=117.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCCe-----eEEeeCCeeCCCC--------CcE-------EEE---ecCCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPAPW-----TSWSKDGKPATPN--------ARV-------TIR---EKEDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~~~-----v~W~~~~~~~~~~--------~~~-------~~~---~~~~~~~l~i~  126 (325)
                      ..|....+.+|++++|.|.+.+.|.+.     +.|++++......        ...       .+.   ...+..+|.|.
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            345566789999999999999887765     9999864322110        000       000   01223459999


Q ss_pred             cCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEe-cCCCCC-eeEEeeCC
Q psy1095         127 EVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV-VPPNDH-DISWFRNN  204 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~-~~~W~~~~  204 (325)
                      +++.+|+|.|+|.+.+..+.....+.|.|..+      |.+...+. ..+..|..+.|.|.+.+ .|.  + .+.|++++
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~------P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~--pi~v~W~k~g  158 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS------PASRLLLD-QVGMKENEDKYMCESSGFYPE--AINITWEKQT  158 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEBC------CEEEEECC---------CEEEEEEEEEBSS--CCEEEEEEEC
T ss_pred             CCCHHHCeEEEEEEEeCCccceeEEEEEEecC------CceEEecC-CccccCCCcEEEEEEccEECC--CeEEEEEECC
Confidence            99999999999999998887777888888764      44444333 33456778889999998 566  6 99999998


Q ss_pred             EEeccCC----CC--ceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE--EeEEEEEE
Q psy1095         205 RLIKLDS----DM--KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV--VTSACLIV  262 (325)
Q Consensus       205 ~~~~~~~----~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v  262 (325)
                      ..+....    ..  ..........+...+.|.|.....+|.|.|+|.|.|..+..  ...+.|.|
T Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          159 QKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             SSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             ccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            6443210    00  01111122233455789999999999999999999988864  44445555

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.86  E-value=5.5e-22  Score=152.34  Aligned_cols=150  Identities=15%  Similarity=0.263  Sum_probs=106.6

Q ss_pred             EecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEcc-CCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      ...+|+++.|.|.+.+ +. .++|+|++..+....         ..+|.|.+ ++.+|+|.|+|.+.|..+.....+.+.
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~---------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC---------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            3567999999999877 44 499999999886531         13699999 999999999999998877644444444


Q ss_pred             EECCCcccC------------CCeee----ecCcC---eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCce
Q psy1095         155 IMDPRAIIS------------RPKVL----NGLEN---LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP  215 (325)
Q Consensus       155 v~~~~~~~~------------~p~~~----~~~~~---~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  215 (325)
                      |........            ++.+.    .....   ..+.+|+.+.|.|.+   |.  +.+.|+|++..+.....   
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~--p~i~W~k~g~~i~~~~~---  150 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TD--KTIKWLKDGSIISPLNA---  150 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SC--SCEEEEETTEECCCSSC---
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CC--CeEEEEECCEECcccCC---
Confidence            432211100            00000    00001   123489999999988   55  89999999998864322   


Q ss_pred             EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         216 EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       216 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                         .       ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus       151 ---~-------~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 ---T-------KNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             ---C-------SSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ---C-------cceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence               1       1379999999999999999999988765

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.86  E-value=1.3e-20  Score=151.82  Aligned_cols=182  Identities=16%  Similarity=0.171  Sum_probs=120.2

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe--------------eCCCCCcEEEEecCCeEEEEEccCCCC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK--------------PATPNARVTIREKEDLRFLEISEVTLE  131 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~--------------~~~~~~~~~~~~~~~~~~l~i~~~~~~  131 (325)
                      ..+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+..              ......++.........+|.|.+++.+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            455667778889999999999999999999999998531              011234666655566678999999999


Q ss_pred             CCeEEEEEEEeCCeeE-EEEEEEEEECCCc-------------ccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCe
Q psy1095         132 DAGLYTIKVENNYGSV-EATARLEIMDPRA-------------IISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD  197 (325)
Q Consensus       132 d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~-------------~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~  197 (325)
                      |+|.|.|.+.+..+.. .....|.|...+.             ....+.+...+....+.+|+.++|.|.+.+.+...+.
T Consensus        85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  164 (250)
T 3esu_F           85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSW  164 (250)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSE
T ss_pred             hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCE
Confidence            9999999998765432 2234556654210             0012233344456678899999999999886632389


Q ss_pred             eEEeeC--CEEeccC---------------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         198 ISWFRN--NRLIKLD---------------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       198 ~~W~~~--~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      +.|+++  +..+..-               ...+.....++  ......|.|.+++.+|+|.|.|.+.+
T Consensus       165 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          165 MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADK--SSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecC--CCCeEEEEECCCCcccCEEEEEEEec
Confidence            999996  3322100               00111111110  11345799999999999999999997

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.86  E-value=2e-21  Score=158.34  Aligned_cols=212  Identities=14%  Similarity=0.201  Sum_probs=122.6

Q ss_pred             cCCCCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC-----------
Q psy1095          40 ISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA-----------  106 (325)
Q Consensus        40 v~~~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~-----------  106 (325)
                      .+++|.+.|.|.+.+..+.. .......+...|..+.+.+|++++|.|.+.+ +.+.+.|||..  ...           
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~-~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~   80 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGS-GGGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEV   80 (270)
T ss_dssp             --------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEE
T ss_pred             chhhhHHHHHHHHhccCCcc-ccccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCc
Confidence            46789999999987765532 2334567778888889999999999999864 67899999832  110           


Q ss_pred             -CCC---C-cEEEEe-cCCeEEEEEccCCCCCCeEEEEEEEeCC----eeEEEEEEEEEECCCcccCCCeeeec-CcCee
Q psy1095         107 -TPN---A-RVTIRE-KEDLRFLEISEVTLEDAGLYTIKVENNY----GSVEATARLEIMDPRAIISRPKVLNG-LENLR  175 (325)
Q Consensus       107 -~~~---~-~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~~  175 (325)
                       ...   . ++.+.. .....+|.|.+++.+|+|.|.|.+.+..    ........|.|........+|.+... +....
T Consensus        81 ~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~  160 (270)
T 3qib_D           81 LQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAE  160 (270)
T ss_dssp             EEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHH
T ss_pred             eecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccc
Confidence             000   0 444432 2345789999999999999999998532    22233456777653322334554432 22234


Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEE-----EecCCcceeEEEEEeCCCCCCC-CeEEEEEEEe
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV-----QVDSKENLVIARLKIPHVYPED-EGEFTCRVAN  249 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~  249 (325)
                      +..|+.++|.|.+.+.++....+.|+++|..+..........     ...+..+...+.|.|.....+| .|.|+|.+.|
T Consensus       161 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~  240 (270)
T 3qib_D          161 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQF  240 (270)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEE
T ss_pred             cccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEe
Confidence            456999999999998444314899999999886432111000     0012233345678898887777 9999999998


Q ss_pred             CCCc
Q psy1095         250 ELGE  253 (325)
Q Consensus       250 ~~~~  253 (325)
                      ....
T Consensus       241 ~~l~  244 (270)
T 3qib_D          241 YGLS  244 (270)
T ss_dssp             CCBC
T ss_pred             cCCC
Confidence            7543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.86  E-value=5e-21  Score=153.78  Aligned_cols=187  Identities=16%  Similarity=0.247  Sum_probs=127.6

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEee----------------CCeeCCCC---CcEEEEe-cCCeEEEEEc
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK----------------DGKPATPN---ARVTIRE-KEDLRFLEIS  126 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~----------------~~~~~~~~---~~~~~~~-~~~~~~l~i~  126 (325)
                      .+...|....+.+|++++|.|.+.+.+.+.+.|||                ++......   .++.+.. .....+|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            46677888889999999999999988999999998                22222211   3555543 2456789999


Q ss_pred             cCCCCCCeEEEEEEEeCCe----eEEEEEEEEEECCCcccCCCeeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEe
Q psy1095         127 EVTLEDAGLYTIKVENNYG----SVEATARLEIMDPRAIISRPKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWF  201 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~  201 (325)
                      +++.+|+|.|.|.+.+..+    .......|.|........+|.+... +....+..|+.++|.|.+.+.+++...+.|+
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  162 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  162 (246)
T ss_dssp             SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence            9999999999999986532    2223456777653222234554433 2333455699999999999977632489999


Q ss_pred             eCCEEeccCCCCceEEEe-----cCCcceeEEEEEeCCCCCCC-CeEEEEEEEeCCCc
Q psy1095         202 RNNRLIKLDSDMKPEVQV-----DSKENLVIARLKIPHVYPED-EGEFTCRVANELGE  253 (325)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  253 (325)
                      +++..+............     .+..+...+.|.|.....+| .|.|+|.|.|....
T Consensus       163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            999888643211100000     12233344679999888888 99999999987644

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=6.2e-21  Score=152.37  Aligned_cols=183  Identities=15%  Similarity=0.135  Sum_probs=128.0

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..+|.|...|.. .+.+|++|+|.|.+.+ +.+.+.|+|++..+..... ..........|.|.+++.+|+|.|+|.+.+
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   81 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRV   81 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEec
Confidence            357888888877 7999999999999864 4568999999876531000 000123456799999999999999999987


Q ss_pred             CCee--EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec
Q psy1095         143 NYGS--VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD  220 (325)
Q Consensus       143 ~~~~--~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  220 (325)
                      ..+.  ....+.|.|...   ..+|.+...+ ...+.+|+.++|.|.+.+. +  +.+.|+|++..+...    ..  ..
T Consensus        82 ~~~~s~~S~~~~L~V~~~---~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~--~~~~w~k~g~~~~~~----~~--~~  148 (242)
T 1p6f_A           82 GELWSEPSNLLDLVVTEM---YDTPTLSVHP-GPEVISGEKVTFYCRLDTA-T--SMFLLLKEGRSSHVQ----RG--YG  148 (242)
T ss_dssp             TTEECCCCCCEEEEEECC---SCCCEEEEES-CSEEETTCEEEEEEECTTS-C--SEEEEEECSSSCEEE----EE--EC
T ss_pred             CCccccCCcceEEEeecc---cCCCceEccC-CCccCCCCcEEEEEecCCC-C--CEEEEEECCCccCcc----cc--CC
Confidence            5442  234566777643   1346665544 4568899999999998643 3  689999998765431    00  11


Q ss_pred             CCcceeEEEEEeCCCCCCCCeEEEEEEEeCC---CcEEeEEEEEEEee
Q psy1095         221 SKENLVIARLKIPHVYPEDEGEFTCRVANEL---GEVVTSACLIVDVV  265 (325)
Q Consensus       221 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~~  265 (325)
                      .    ....|.|.+++.+|+|.|+|.+.|..   ...+..+.|.|...
T Consensus       149 ~----~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          149 K----VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             S----SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             C----ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            1    34689999999999999999999864   23344566766543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.86  E-value=1e-20  Score=149.60  Aligned_cols=183  Identities=16%  Similarity=0.275  Sum_probs=124.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--ee---C----------------CCCCcEEEEec--CCeEEEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KP---A----------------TPNARVTIREK--EDLRFLE  124 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~---~----------------~~~~~~~~~~~--~~~~~l~  124 (325)
                      ..|.+..+.+|++++|.|.+.+.+  .+.+.|+|+.  ..   +                ....++.+..+  .+..+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   84 (222)
T 1q9r_B            5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQ   84 (222)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             ecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEE
Confidence            345567799999999999998765  6789999853  11   0                01245555543  3457899


Q ss_pred             EccCCCCCCeEEEEEEEeCCe-----eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCC-e
Q psy1095         125 ISEVTLEDAGLYTIKVENNYG-----SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDH-D  197 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~-~  197 (325)
                      |.+++.+|+|.|.|.+.+..+     .......|.|...+  ..+|.+........+..|+.++|.|.+.+. |.  + .
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~--p~~  160 (222)
T 1q9r_B           85 MNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE--PVT  160 (222)
T ss_dssp             ECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC--CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSS--CCE
T ss_pred             ECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC--CCCCeEEEccccccccCCCcEEEEEEEccEECC--CCE
Confidence            999999999999999987643     12233466665422  234565544433345689999999999986 65  5 9


Q ss_pred             eEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095         198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL  260 (325)
Q Consensus       198 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  260 (325)
                      +.|++++..+....  ......++ .+...+.|.|.++..+| |.|+|.|.|..+.......+
T Consensus       161 v~W~~~g~~~~~~~--~~~~~~~~-~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          161 VTWNSGSLSSGVHT--FPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             EEEGGGTBCTTEEE--EEEEEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEecCCeEcceEe--ccccccCC-cEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence            99999987653210  01111122 33345689999999999 99999999998876554443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.86  E-value=9.4e-23  Score=162.54  Aligned_cols=186  Identities=13%  Similarity=0.169  Sum_probs=105.1

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe--eC------------CCCCcEEEEecCCeEEEEEccCCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK--PA------------TPNARVTIREKEDLRFLEISEVTL  130 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~  130 (325)
                      .+.+...|....+.+|++++|.|.+.+.|.+.+.|+|++.  ..            ....++.....+...+|.|.+++.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            4566777888889999999999999888778899998532  11            001233322223345799999999


Q ss_pred             CCCeEEEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEecc
Q psy1095         131 EDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL  209 (325)
Q Consensus       131 ~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~  209 (325)
                      +|+|.|.|.+.+..+.. .....|.|...   ..+|.+........+..|+.++|.|.+.+.+++...+.|++++..+..
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  179 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRA---DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  179 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----C
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCC---CCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCC
Confidence            99999999998765422 12234555432   124665554433334479999999999986553247999999987654


Q ss_pred             C-CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         210 D-SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       210 ~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      . ..........+..+...+.|.|.....+|+|.|+|.|.|....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          180 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             CEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            3 1000000011112334568999999999999999999997543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.86  E-value=1.5e-20  Score=147.72  Aligned_cols=172  Identities=19%  Similarity=0.280  Sum_probs=117.1

Q ss_pred             EecCCceEecCCCeEEEEEEEEec-------CCCeeEEeeCCee------C-----------CCCCcEEEEec--CCeEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQ-------PAPWTSWSKDGKP------A-----------TPNARVTIREK--EDLRF  122 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~-------p~~~v~W~~~~~~------~-----------~~~~~~~~~~~--~~~~~  122 (325)
                      ...|..+.+.+|++++|.|.+.+.       +.+.+.|+|++..      +           ....++.+..+  .+..+
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s   83 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS   83 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence            455777889999999999998754       5678999998642      1           11235544332  23457


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCeeEE----EEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec----CCC
Q psy1095         123 LEISEVTLEDAGLYTIKVENNYGSVE----ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV----PPN  194 (325)
Q Consensus       123 l~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~  194 (325)
                      |.|.+++.+|+|.|.|.+.+..+...    ..+.|.|...+   ..|.+...   ..+.+|+.++|.|.+.+.    |+ 
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~~---~~~~~G~~v~L~C~~~~~~~~~p~-  156 (214)
T 2zg1_A           84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI---EKPDIHFL---EPLESGRPTRLSCSLPGSCEAGPP-  156 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC---CCCEEC-----CCCCTTCCEEEEEECTTCCSCSSC-
T ss_pred             EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC---CCCceecC---ccccCCCeEEEEEEeccCCCCCCC-
Confidence            99999999999999999988753221    35677777642   23444331   126689999999999764    44 


Q ss_pred             CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095         195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL  260 (325)
Q Consensus       195 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  260 (325)
                       +.+.|++++..+.....            ...+.|.|..+..+|.|.|+|.|.|..+.......+
T Consensus       157 -p~v~W~~~~~~~~~~~~------------~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v  209 (214)
T 2zg1_A          157 -LTFSWTGNALSPLDPET------------TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV  209 (214)
T ss_dssp             -CEEEEESSTTSSSCSSC------------CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEE
T ss_pred             -ceEEEeCCCCccCCCCc------------eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEE
Confidence             89999998854321110            022489999999999999999999976544433333

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.86  E-value=1e-20  Score=152.02  Aligned_cols=182  Identities=18%  Similarity=0.234  Sum_probs=119.4

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecC-----CCeeEEeeCC--ee---C---------CCCCcEEEEecCCeEEEEEcc
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQP-----APWTSWSKDG--KP---A---------TPNARVTIREKEDLRFLEISE  127 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p-----~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~  127 (325)
                      .+...|..+.+.+|++++|.|.+.+.|     .+.+.|+|+.  ..   +         ....++.+.......+|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            456678888899999999999998877     6899999842  11   1         013466665556667899999


Q ss_pred             CCCCCCeEEEEEEEeCCee-EEEEEEEEEECCCcc-------cCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeE
Q psy1095         128 VTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAI-------ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS  199 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~  199 (325)
                      ++.+|+|.|.|.+.+..+. ......|.|...+..       ..++.....+....+.+|+.++|.|.+.+.+++.+.+.
T Consensus        83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  162 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMH  162 (247)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred             CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEE
Confidence            9999999999999876543 222356666553210       00122233333456889999999999998753227899


Q ss_pred             EeeCC--EEec----cC--C---------CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         200 WFRNN--RLIK----LD--S---------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       200 W~~~~--~~~~----~~--~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      |++++  ..+.    ..  .         ..+.....+  .......|.|.+++.+|+|.|.|.+.|.
T Consensus       163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLD--TSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE--GGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEe--cCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99953  2110    00  0         011111110  0113468999999999999999999985

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.86  E-value=4.6e-21  Score=155.05  Aligned_cols=176  Identities=19%  Similarity=0.249  Sum_probs=118.5

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeCC----------------CCCcEEEEec--CCeEEEEEcc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPAT----------------PNARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~~----------------~~~~~~~~~~--~~~~~l~i~~  127 (325)
                      ..|....+.+|++|+|.|.+.+.|  .+.+.|+|++  ..+.                ...++.+...  ....+|.|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (257)
T 1f3r_B            5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNS   84 (257)
T ss_dssp             EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEES
T ss_pred             ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            445556799999999999998875  6889999852  1110                1246665542  4567899999


Q ss_pred             CCCCCCeEEEEEEEeCCe-------e--EEEEEEEEEECCCcc---------cCCCeeeecCcCeeEecCCcEEEEEEEE
Q psy1095         128 VTLEDAGLYTIKVENNYG-------S--VEATARLEIMDPRAI---------ISRPKVLNGLENLRCCDGDSVTFECQVQ  189 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~~-------~--~~~~~~l~v~~~~~~---------~~~p~~~~~~~~~~v~~g~~v~l~C~~~  189 (325)
                      ++.+|+|.|.|.+.+..|       .  ......|.|...+..         ..++.+...+....+.+|+.++|.|.+.
T Consensus        85 v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  164 (257)
T 1f3r_B           85 LQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGS  164 (257)
T ss_dssp             CCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECS
T ss_pred             CCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEEC
Confidence            999999999999998742       1  123456777654210         0112233334455678999999999998


Q ss_pred             ecCCCCCeeEEee--CCEEecc----C------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         190 VVPPNDHDISWFR--NNRLIKL----D------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       190 ~~~~~~~~~~W~~--~~~~~~~----~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +.++  +.+.|++  ++..+..    .      ...+......+    ....|.|.+++.+|+|.|.|.|.|..
T Consensus       165 ~~~~--~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          165 QNIN--NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG----TDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             SCCB--TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEB----TEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CcCC--CcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCC----CEEEEEECCCChhhCEEEEEEEeCCC
Confidence            8877  7899999  5543210    0      01111111111    34689999999999999999999864

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.86  E-value=1.5e-20  Score=150.19  Aligned_cols=178  Identities=13%  Similarity=0.212  Sum_probs=118.8

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---------------CCCCCcEEEEe-cCCeEEEEEccC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---------------ATPNARVTIRE-KEDLRFLEISEV  128 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---------------~~~~~~~~~~~-~~~~~~l~i~~~  128 (325)
                      .+...|..+.+.+|++++|.|. .+.|.+.+.|+|+.  ..               .....++.+.. .....+|.|.++
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            4566788888999999999999 67888999999852  11               01123555543 234567999999


Q ss_pred             CCCCCeEEEEEEEeCCee-----EEEEEEEEEECCCccc------CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCe
Q psy1095         129 TLEDAGLYTIKVENNYGS-----VEATARLEIMDPRAII------SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD  197 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~------~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~  197 (325)
                      +.+|+|.|.|.+.+..+.     ......|.|...+...      ..+.+...+....+.+|+.++|.|.+.+.+.  +.
T Consensus        81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~--~~  158 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAF--DY  158 (238)
T ss_dssp             CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTC--CE
T ss_pred             CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCC--Cc
Confidence            999999999999886542     1123466666542100      0114444455667899999999999998887  89


Q ss_pred             eEEeeCCE-----Eec---------cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         198 ISWFRNNR-----LIK---------LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       198 ~~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +.|++++.     .+.         ...++...  .+  .......|.|.+++.+|+|.|+|.|.|..
T Consensus       159 i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          159 FPWYQQFPGEGPALLISILSVSDKKEDGRFTIF--FN--KREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEEEECTTSCCEEEEEEETTCSEEEETTEEEE--EE--TTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEEECCCCCCEEEEEEccCCCcccCCceEEE--ec--CCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            99999641     110         00111100  00  00124689999999999999999999974

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.86  E-value=7.6e-21  Score=148.97  Aligned_cols=179  Identities=16%  Similarity=0.232  Sum_probs=121.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeCC----------------CCCcEEEEec--CCeEEEEEcc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPAT----------------PNARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~~----------------~~~~~~~~~~--~~~~~l~i~~  127 (325)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|++  ....                ...++.+...  .+..+|.|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   84 (210)
T 3d9a_H            5 QESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNS   84 (210)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECC
Confidence            346667899999999999998865  4789999852  2110                1245655432  3456899999


Q ss_pred             CCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCC-eeEEeeCCE
Q psy1095         128 VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDH-DISWFRNNR  205 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~-~~~W~~~~~  205 (325)
                      ++.+|+|.|.|.+.+.. .......|.|....  ..+|.+........+..|+.+.|.|.+.+. |.  + .+.|++++.
T Consensus        85 v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~--p~~v~W~~~~~  159 (210)
T 3d9a_H           85 VTTEDTATYYCANWDGD-YWGQGTLVTVSAAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE--PVTVTWNSGSL  159 (210)
T ss_dssp             CCGGGCEEEEEEETTSS-CBCCCEEEEECCCC--CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSS--CCEEEEGGGTB
T ss_pred             CCcccCEEEEEEEecCc-ccccceEEEeccCC--CCCCEEEEecCCcccccCCcEEEEEEEeeEecC--CcEEEEeeCCc
Confidence            99999999999998753 11223456665321  234555544433456789999999999987 55  5 999999887


Q ss_pred             EeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         206 LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      .+.........  .. ..+...+.|.|.++..+| |.|+|.|.|..+.....
T Consensus       160 ~~~~~~~~~~~--~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          160 SSGVHTFPAVL--QS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             CTTEEECCCEE--ET-TEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccceEEcCCcc--CC-CcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            54221111111  11 223345679999988877 99999999998876543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.86  E-value=3.4e-20  Score=147.00  Aligned_cols=188  Identities=14%  Similarity=0.228  Sum_probs=121.2

Q ss_pred             EecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--ee---C---C-----------CCCcEEEEec--CCeEEEEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KP---A---T-----------PNARVTIREK--EDLRFLEI  125 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~---~---~-----------~~~~~~~~~~--~~~~~l~i  125 (325)
                      ...|....+.+|++++|.|.+.+.+  .+.+.|||++  ..   +   .           ...++.+..+  .+..+|.|
T Consensus         4 l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (227)
T 1mju_H            4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL   83 (227)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEE
Confidence            3456677899999999999998866  6789999853  21   1   0           0245555432  35678999


Q ss_pred             ccCCCCCCeEEEEEEEeCCee-EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC
Q psy1095         126 SEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN  204 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~  204 (325)
                      .+++.+|+|.|.|.+.+.... ......|.|...+  ..+|.+........+..|+.++|.|.+.+..+....+.|++++
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  161 (227)
T 1mju_H           84 SSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK--TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGS  161 (227)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSC--CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCC--CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCC
Confidence            999999999999999876432 1233567776521  1345554433333566899999999999863321499999998


Q ss_pred             EEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         205 RLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      ..+.........  .. ..+...+.|.|..+..+| |.|+|.|.|..........+.+
T Consensus       162 ~~~~~~~~~~~~--~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~  215 (227)
T 1mju_H          162 LSSGVHTFPAVL--QS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEP  215 (227)
T ss_dssp             BCTTEEECCCEE--ET-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             CcCCcEECCcee--cC-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCC
Confidence            764211111111  11 233345689999998888 9999999998766555544433

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.85  E-value=2.9e-20  Score=150.16  Aligned_cols=184  Identities=17%  Similarity=0.288  Sum_probs=123.6

Q ss_pred             EecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeC------C-----------CCCcEEEEec--CCeEEEEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPA------T-----------PNARVTIREK--EDLRFLEI  125 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~------~-----------~~~~~~~~~~--~~~~~l~i  125 (325)
                      +..|....+.+|++++|.|.+.+.|  .+.+.|+|++  ..+      .           ...++.+...  .+..+|.|
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (256)
T 1nqb_A            4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQL   83 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEE
Confidence            3556778899999999999998765  6789999842  211      0           1245655542  44678999


Q ss_pred             ccCCCCCCeEEEEEEEeCCee-----EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCC---Ce
Q psy1095         126 SEVTLEDAGLYTIKVENNYGS-----VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPND---HD  197 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~---~~  197 (325)
                      .+++.+|+|.|.|.+.+..+.     ....+.|.|...      |.+...+....+.+|+.++|.|.+.+.+++.   +.
T Consensus        84 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~------~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~  157 (256)
T 1nqb_A           84 SSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSD------IELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTY  157 (256)
T ss_dssp             CSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCC------CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred             CcCChhhCEEEEEEEeeccCccceeEEcCceeeeeccc------ccEEecCcEEEEecCCcEEEEeEecCcccccccceE
Confidence            999999999999999887441     223456666543      4444555556788999999999998877621   28


Q ss_pred             eEEee--CCEEecc----------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE-EeEEEEEE
Q psy1095         198 ISWFR--NNRLIKL----------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV-VTSACLIV  262 (325)
Q Consensus       198 ~~W~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v  262 (325)
                      +.|+|  ++..+..          ....+......+    ....|.|.+++.+|+|.|+|.+.+..... .....|.|
T Consensus       158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V  231 (256)
T 1nqb_A          158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSG----TDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEI  231 (256)
T ss_dssp             EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccC----CEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEE
Confidence            99999  5543310          001111111111    34689999999999999999998854322 22344555

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.85  E-value=5e-20  Score=145.36  Aligned_cols=181  Identities=17%  Similarity=0.319  Sum_probs=123.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--ee---C--------------CCCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KP---A--------------TPNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~---~--------------~~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..|....+.+|++|+|.|.+.+.+  .+.+.|||..  ..   +              ....++.+..+  .+..+|.|.
T Consensus         5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (220)
T 2fbj_H            5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMS   84 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEEC
T ss_pred             ecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEEC
Confidence            345567899999999999998765  5789999853  11   1              01246666543  345789999


Q ss_pred             cCCCCCCeEEEEEEEeCCee---EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEee
Q psy1095         127 EVTLEDAGLYTIKVENNYGS---VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFR  202 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~  202 (325)
                      +++.+|+|.|.|.+.+..+.   ......|.|...+  ..+|.+.... ...+..|+.++|.|.+.+..+. .+.+.|++
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           85 KVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES--ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             SCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSC--CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             CCChhhCEEEEEEEeccccccceecCCEEEEecCCC--CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            99999999999999886442   2234567776532  1345555443 3345689999999999987432 36899999


Q ss_pred             CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         203 NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      ++..+..... ... ...+..+...+.|.|.....+|.|.|+|.|.|..+...
T Consensus       162 ~~~~~~~~~~-~~~-~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKDITTVNF-PPA-LASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSCEEEEC-CCE-ECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEecceEec-Cce-ECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            9876521100 001 11222333446799999999999999999999987654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.85  E-value=1.3e-21  Score=154.64  Aligned_cols=181  Identities=17%  Similarity=0.238  Sum_probs=120.2

Q ss_pred             CceEecCCCeEEEEEEEEecCC-----CeeEEeeCCeeC-------------CCCCcEEEEe---cCCeEEEEEccCCCC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQPA-----PWTSWSKDGKPA-------------TPNARVTIRE---KEDLRFLEISEVTLE  131 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p~-----~~v~W~~~~~~~-------------~~~~~~~~~~---~~~~~~l~i~~~~~~  131 (325)
                      .++.+.+|++++|.|.+.+.|.     +.+.|++++...             ....+..+..   ..+..+|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            3456889999999999887653     689999986432             1112322221   112456999999999


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-EecCCCCCeeEEeeC-CEEecc
Q psy1095         132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-QVVPPNDHDISWFRN-NRLIKL  209 (325)
Q Consensus       132 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~-~~~~~~  209 (325)
                      |+|.|+|.+.+.. .....+.|.|...   ...|.+...+ ...+.+|+.+.|.|.+ .+.|.  +.+.|+++ +..+..
T Consensus        83 D~G~Y~C~~~~~~-~~~~~~~l~V~~~---~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~--~~v~W~~~~~~~~~~  155 (222)
T 4i0k_A           83 DEGSYTCFVSIQD-FDSAAVSLQVAAP---YSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPE--AEVFWKDGQGVPLTG  155 (222)
T ss_dssp             GCSCEEEEEEECC-CCCCCCCCCCCBC---CCCCEEECCC------CCSEEEEEEEEEEEBSC--CEEEEECTTSCBCCS
T ss_pred             cCEEEEEEEEeCC-CceEEEEEEEEcC---CCCCcEEeCC-CceecCCceEEEEEecccccCC--CeEEEEcCCCccCCC
Confidence            9999999998753 3334445555543   1235554433 3467789999999999 77777  89999994 443322


Q ss_pred             CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEe
Q psy1095         210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      ...  .......  ......|.|.+++.+|.|.|+|.|.|..|.....+.|.|..
T Consensus       156 ~~~--~~~~~~~--~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  206 (222)
T 4i0k_A          156 NVT--TSQMANE--RGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITG  206 (222)
T ss_dssp             EEE--EEEEECT--TSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             Ccc--eeEEcCC--CCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeC
Confidence            111  1111111  11335688999999999999999999999999888888843

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.85  E-value=1.2e-19  Score=146.58  Aligned_cols=203  Identities=13%  Similarity=0.208  Sum_probs=130.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--ee---C--------------CCCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KP---A--------------TPNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~---~--------------~~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..+....+.+|++|+|.|.+.+.+  .+.+.|||..  ..   +              ....++.+...  ....+|.|.
T Consensus         7 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   86 (256)
T 3umt_A            7 QQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELR   86 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             EccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEEC
Confidence            345556799999999999998765  6789999732  11   0              01235554432  345679999


Q ss_pred             cCCCCCCeEEEEEEEeC----CeeEEEEEEEEEECCCc----------ccCCCeeeecCcCeeEecCCcEEEEEEEEecC
Q psy1095         127 EVTLEDAGLYTIKVENN----YGSVEATARLEIMDPRA----------IISRPKVLNGLENLRCCDGDSVTFECQVQVVP  192 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~----~~~~~~~~~l~v~~~~~----------~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~  192 (325)
                      +++.+|+|.|.|.+.+.    .+.......|.|...+.          ...++.+...+....+.+|+.++|.|.+.+.+
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  166 (256)
T 3umt_A           87 SLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDI  166 (256)
T ss_dssp             SCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCC
T ss_pred             CCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCC
Confidence            99999999999999876    23333445667764210          01145666666667889999999999998877


Q ss_pred             CCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecCC
Q psy1095         193 PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTS  272 (325)
Q Consensus       193 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~  272 (325)
                      .  +.+.|++....    ..               ..+.+..    +. .                         .....
T Consensus       167 ~--~~v~W~k~~~~----~~---------------~~~~~~~----~~-~-------------------------~~~~~  195 (256)
T 3umt_A          167 G--SNLNWLQQKPD----GT---------------IKRLIYA----TS-S-------------------------LDSGV  195 (256)
T ss_dssp             T--TCEEEEEECTT----CC---------------EEEEEET----TT-E-------------------------ECTTS
T ss_pred             C--cEEEEEEECCC----CC---------------cEEEEEe----cc-c-------------------------cCCcc
Confidence            6  68999984310    00               0111110    00 0                         00001


Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEE-eEEEEEEeccc
Q psy1095         273 DGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS-CYASVAVEGRK  323 (325)
Q Consensus       273 ~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p  323 (325)
                      .+++.........+|.|.++..+|+|.|+|.|.|..+... ..+.|.|++.+
T Consensus       196 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          196 PKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             CCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            2334444456667899999999999999999999765433 34788887654

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.85  E-value=5.4e-20  Score=149.23  Aligned_cols=185  Identities=19%  Similarity=0.249  Sum_probs=122.4

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecC------CCeeEEeeC--CeeC------------CCCCcEEEEecCCeEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQP------APWTSWSKD--GKPA------------TPNARVTIREKEDLRFL  123 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p------~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l  123 (325)
                      ..+.+...|..+.+.+|++|+|.|.+.+.+      .+.+.|+|+  +..+            ....++.+.......+|
T Consensus         4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L   83 (264)
T 2gjj_A            4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTL   83 (264)
T ss_dssp             CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred             cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEE
Confidence            346777888888999999999999998776      678999985  2211            01346666555566789


Q ss_pred             EEccCCCCCCeEEEEEEEeCCee-EEEEEEEEEECCCc-------------ccCCCeeeecCcCeeEecCCcEEEEEEEE
Q psy1095         124 EISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRA-------------IISRPKVLNGLENLRCCDGDSVTFECQVQ  189 (325)
Q Consensus       124 ~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~-------------~~~~p~~~~~~~~~~v~~g~~v~l~C~~~  189 (325)
                      .|.+++.+|+|.|.|.+.+..+. ......|.|...+.             ...++.....+....+.+|+.++|.|.+.
T Consensus        84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  163 (264)
T 2gjj_A           84 TIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKAS  163 (264)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEE
T ss_pred             EECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEe
Confidence            99999999999999999876432 22335677765421             00011112223345688999999999998


Q ss_pred             ecCCCCCeeEEeeCC--EE---ec---cCC---------CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         190 VVPPNDHDISWFRNN--RL---IK---LDS---------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       190 ~~~~~~~~~~W~~~~--~~---~~---~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      +.+...+.+.|+++.  ..   +.   ...         ..+.....+  .......|.|.+++.+|+|.|.|.+.|.
T Consensus       164 ~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          164 GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD--TSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEc--CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            776422689999863  21   11   000         011111111  0113468999999999999999999985

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.85  E-value=5.2e-20  Score=148.77  Aligned_cols=179  Identities=16%  Similarity=0.230  Sum_probs=116.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEec--CCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      ..|....+.+|++|+|.|.+.+.  +.+.+.|+|+.  ...            ....++.....+...+|.|.+++.+|+
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE   86 (256)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence            34556779999999999999876  77899999842  111            123466666556667899999999999


Q ss_pred             eEEEEEEEeCCe---eEEEEEEEEEECCCccc---------------CCCeeeecCcCeeEecCCcEEEEEEEEecCCCC
Q psy1095         134 GLYTIKVENNYG---SVEATARLEIMDPRAII---------------SRPKVLNGLENLRCCDGDSVTFECQVQVVPPND  195 (325)
Q Consensus       134 G~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~---------------~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~  195 (325)
                      |.|+|.+.+..+   .......|.|...+...               ..+.+.. +....+.+|+.++|.|.+.+.+...
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~  165 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSS  165 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGG
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCcccc
Confidence            999999988543   22234566666543110               0123333 3345688999999999998876323


Q ss_pred             CeeEEeeC--CEEec------cCC---------CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         196 HDISWFRN--NRLIK------LDS---------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       196 ~~~~W~~~--~~~~~------~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +.+.|+++  +..+.      ...         ..+.....++  ......|.|.+++.+|+|.|.|.+.|..
T Consensus       166 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          166 YAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN--SKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             SEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEET--TTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecC--CCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            89999986  32210      000         0011111111  1134579999999999999999999864

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.85  E-value=2.6e-19  Score=140.40  Aligned_cols=153  Identities=24%  Similarity=0.347  Sum_probs=110.4

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCC-CCCCCeE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV-YPEDEGE  242 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~  242 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+...... ......+    ....|.|.++ +.+|+|.
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~--~~v~W~k~~~~~~~~~~~-~~~~~~~----~~~~L~i~~v~~~~d~G~   78 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPR--PKIVWNKKGKKVSNQRFE-VIEFDDG----SGSVLRIQPLRTPRDEAI   78 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESC--CEEEEEETTEECCCTTEE-EEEEGGG----TEEEEEECSCCTTTTCEE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCC--CEEEEEECCcCCCCCcee-EEEEcCC----CceEEEEeccCCCCCCeE
Confidence            467777777888999999999999999888  899999999988643321 1111111    2468999999 5999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeCC------e--------ecC-----------------------------C---CCce
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVKG------K--------DLT-----------------------------S---DGRL  276 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~~------~--------~~~-----------------------------~---~~~~  276 (325)
                      |+|.+.|..+.....+.|.|.....      .        .+.                             .   .+++
T Consensus        79 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~  158 (212)
T 2yd6_A           79 YECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI  158 (212)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCE
T ss_pred             EEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceE
Confidence            9999999998877777777743210      0        000                             0   0111


Q ss_pred             EEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeE-EEEEEeccc
Q psy1095         277 NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY-ASVAVEGRK  323 (325)
Q Consensus       277 ~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p  323 (325)
                      ..........|.|.++..+|+|.|+|.|.|..|....+ +.|.|...|
T Consensus       159 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             EEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence            22222345789999999999999999999999987655 788887765

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.85  E-value=6.7e-20  Score=148.11  Aligned_cols=184  Identities=14%  Similarity=0.216  Sum_probs=124.9

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe--cCCCeeEEeeCC--eeC-----------------CCCCcEEEEe--cCCe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG--QPAPWTSWSKDG--KPA-----------------TPNARVTIRE--KEDL  120 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~--~~~-----------------~~~~~~~~~~--~~~~  120 (325)
                      .+|.+...+..+.+.+|++|+|.|.+.+  .+.+.+.|+|..  ...                 ....++.+..  ....
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            4667788888999999999999999987  367789999732  110                 1123566553  3446


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeC------------CeeEEEEEEEEEECCCccc---------CCCeeeecCcCeeEecC
Q psy1095         121 RFLEISEVTLEDAGLYTIKVENN------------YGSVEATARLEIMDPRAII---------SRPKVLNGLENLRCCDG  179 (325)
Q Consensus       121 ~~l~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~v~~~~~~~---------~~p~~~~~~~~~~v~~g  179 (325)
                      .+|.|.+++.+|+|.|.|.+.+.            .........|.|...+...         .++.+...+....+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            78999999999999999999876            2233345567776542210         13556666677788999


Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeC--CEEec---cC-------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRN--NRLIK---LD-------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      +.++|.|.+.+.+.. +.+.|++.  +..+.   ..       ...+......+    ....|.|.+++.+|+|.|.|.+
T Consensus       165 ~~v~L~C~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~~  239 (256)
T 3juy_B          165 ERATFSCRSSHSIRS-RRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSG----TDFTLTITRVEPEDFALYYCQV  239 (256)
T ss_dssp             SCEEEEEEESSCCTT-CCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCEEEEEEECCCcCC-eeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccC----CEEEEEECCCCHhHCEEEEEEE
Confidence            999999999876542 68999983  22111   00       01111111122    3467999999999999999999


Q ss_pred             EeCCC
Q psy1095         248 ANELG  252 (325)
Q Consensus       248 ~~~~~  252 (325)
                      .|...
T Consensus       240 ~~~~~  244 (256)
T 3juy_B          240 YGASS  244 (256)
T ss_dssp             CCSSC
T ss_pred             eeCCC
Confidence            88543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.85  E-value=4.9e-20  Score=145.41  Aligned_cols=182  Identities=16%  Similarity=0.275  Sum_probs=122.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--ee---C---CC-------------CCcEEEEec--CCeEEEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KP---A---TP-------------NARVTIREK--EDLRFLE  124 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~---~---~~-------------~~~~~~~~~--~~~~~l~  124 (325)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +   ..             ..++.+..+  .+..+|.
T Consensus         5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   84 (220)
T 1pz5_B            5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQ   84 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEE
Confidence            446677899999999999998765  6889999853  11   1   00             245555432  3456899


Q ss_pred             EccCCCCCCeEEEEEEEeCCee---EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCC-eeE
Q psy1095         125 ISEVTLEDAGLYTIKVENNYGS---VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDH-DIS  199 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~-~~~  199 (325)
                      |.+++.+|+|.|.|.+.+..+.   ......|.|...+  ..+|.+........+.+|+.+.|.|.+.+. |.  + .+.
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~--p~~v~  160 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT--TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPE--PVTVK  160 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSS--CCEEE
T ss_pred             EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC--CCCCeEEEcccccccCCCCcEEEEEEEEEEeCC--CeEEE
Confidence            9999999999999999886432   1134566665421  234555544433446789999999999987 65  6 999


Q ss_pred             EeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095         200 WFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC  259 (325)
Q Consensus       200 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  259 (325)
                      |++++............  .. ..+...+.|.|.++..+| |.|+|.|.|..+.....+.
T Consensus       161 W~~~~~~~~~~~~~~~~--~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          161 WNYGALSSGVRTVSSVL--QS-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             EGGGTCCTTEEECCCEE--ET-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EecCCcccceEEcCCcc--cC-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            99987631100000000  11 223345789999988876 9999999999987655443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.84  E-value=5.7e-19  Score=138.47  Aligned_cols=154  Identities=21%  Similarity=0.341  Sum_probs=111.2

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC-CCCceEEEecCCcceeEEEEEeCCCCC-CCC
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD-SDMKPEVQVDSKENLVIARLKIPHVYP-EDE  240 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~  240 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+... .++... ...+    ....|.|.+++. +|+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~--~~v~W~~~~~~~~~~~~~~~~~-~~~~----~~~~L~i~~v~~~~d~   77 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPP--PSIVWRKNGKKVSGTQSRYTVL-EQPG----GISILRIEPVRAGRDD   77 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSC--CEEEEEETTEECCTTSTTEEEE-EETT----TEEEEEESSCCTTTTC
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCC--CeEEEEECCEECCCCcceeEEE-EcCC----CeEEEEEEecCCCCcC
Confidence            4678888888889999999999999998887  899999999988632 222221 1122    236899999999 999


Q ss_pred             eEEEEEEEeCCCc-EEeEEEEEEEeeCC-----eec---------CCCCce-------------EEEEeCC---------
Q psy1095         241 GEFTCRVANELGE-VVTSACLIVDVVKG-----KDL---------TSDGRL-------------NIITVGG---------  283 (325)
Q Consensus       241 G~Y~C~~~~~~~~-~~~~~~l~v~~~~~-----~~~---------~~~~~~-------------~~~~~~~---------  283 (325)
                      |.|+|.+.|..+. ....+.|.|.....     +.+         ..+..+             ..+..++         
T Consensus        78 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~  157 (212)
T 2yd1_A           78 APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR  157 (212)
T ss_dssp             SEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTT
T ss_pred             ceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCe
Confidence            9999999999888 66777777744311     000         000000             0111111         


Q ss_pred             ----EEEEEEcCCCCCCCeEEEEEEECCCeeEEeE-EEEEEeccc
Q psy1095         284 ----TSVLTIEDITGDDSGKYQVHVSNQHGSDSCY-ASVAVEGRK  323 (325)
Q Consensus       284 ----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p  323 (325)
                          ...|.|.++..+|+|.|+|.|.|..|..... +.|.|++.+
T Consensus       158 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          158 YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             EEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence                1269999999999999999999999999876 899998765

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.84  E-value=1.9e-18  Score=133.11  Aligned_cols=172  Identities=16%  Similarity=0.190  Sum_probs=121.8

Q ss_pred             ecCCc-eEecCCCeEEEEEEEEecCCC--eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          70 AVPHN-KICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        70 ~~~~~-~~v~~g~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      ..|.. ..+..|++++|.|.+ +.|.|  .|+|++.+..+   .+...  ......|.|.+++.+|+|.|.|.+.+..+.
T Consensus        11 ~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~   84 (210)
T 1gsm_A           11 EPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRT   84 (210)
T ss_dssp             ESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             eCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe--cCCccEEEECccCcccCceEEEEEEeCCCc
Confidence            33433 578999999999999 88877  99999865444   22222  244567999999999999999999999888


Q ss_pred             EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC---CCeeEEeeCCEEeccCCCCceEE------
Q psy1095         147 VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN---DHDISWFRNNRLIKLDSDMKPEV------  217 (325)
Q Consensus       147 ~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~------  217 (325)
                      ....+.|.|..+|..   +.+  .+  ..+..|+.+ |.|.+.+.+|.   .+++.|+|++..+..........      
T Consensus        85 ~~~~~~ltV~~~P~~---~~i--~~--~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~  156 (210)
T 1gsm_A           85 FQHTVQLLVYAFPNQ---LTV--SP--AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEE  156 (210)
T ss_dssp             EEEEEEEEEEBCCSE---EEE--ES--SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTC
T ss_pred             eEEEEEEEEEecCCC---cEE--cc--ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccc
Confidence            888899999886432   121  12  145678888 99999986442   25899999999985432111011      


Q ss_pred             E--ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         218 Q--VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       218 ~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      .  .....+...+.|.+.....+|.+.|+|.|.+..-...
T Consensus       157 ~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~  196 (210)
T 1gsm_A          157 PQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLE  196 (210)
T ss_dssp             CSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred             ccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCc
Confidence            0  0112344557788887777788899999998764433

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.84  E-value=5.3e-20  Score=145.72  Aligned_cols=181  Identities=14%  Similarity=0.238  Sum_probs=120.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeC-----------------CCCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPA-----------------TPNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|||+.  ..+                 ....++.+..+  .+..+|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (225)
T 1op3_H            5 VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMH   84 (225)
T ss_dssp             EEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEEC
Confidence            345567899999999999998766  6789999853  211                 01246665543  346789999


Q ss_pred             cCCCCCCeEEEEEEEeCCe-----e---EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCee
Q psy1095         127 EVTLEDAGLYTIKVENNYG-----S---VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI  198 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~-----~---~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~  198 (325)
                      +++.+|+|.|.|.+.+..+     .   ......|.|...+  ..+|.+........+..|+.+.|.|.+.+..+....+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  162 (225)
T 1op3_H           85 KMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (225)
T ss_dssp             SCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS--CBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred             CCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCC--CcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEE
Confidence            9999999999999988753     1   1234577777531  1235554332222356799999999999873321499


Q ss_pred             EEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       199 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      .|++++..+..... ... ...+..+...+.|.|.++..+| |.|+|.|.|..+...
T Consensus       163 ~W~~~~~~~~~~~~-~~~-~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          163 SWNSGALTSGVHTF-PAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             ECCTTSCCTTCEEC-CCE-ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEecCCCcCCeEec-Cce-eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            99998865321100 101 1122233345689999998888 999999999765443

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.84  E-value=1.6e-19  Score=145.83  Aligned_cols=182  Identities=14%  Similarity=0.191  Sum_probs=121.5

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC-------------CCCCcEEEE--ecCCeEEEEEccC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA-------------TPNARVTIR--EKEDLRFLEISEV  128 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~-------------~~~~~~~~~--~~~~~~~l~i~~~  128 (325)
                      ..+...|....+.+|++|+|.|.+.+.|.+.+.|+|..  ...             ....++.+.  ......+|.|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            45667777888999999999999998899999999832  110             012344442  2345678999999


Q ss_pred             CCCCCeEEEEEEEeCCe----eEEEEEEEEEECCC--------------cccCCCeeeecCcCeeEecCCcEEEEEEEEe
Q psy1095         129 TLEDAGLYTIKVENNYG----SVEATARLEIMDPR--------------AIISRPKVLNGLENLRCCDGDSVTFECQVQV  190 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~--------------~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~  190 (325)
                      +.+|+|.|+|.+.+..+    .......|.|....              ....+|.+...+....+.+|+.++|.|.+.+
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  163 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN  163 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence            99999999999988643    22234566666510              1123466677666777889999999999986


Q ss_pred             cCCCCCeeEEeeCC--EEe---cc--CC--------CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         191 VPPNDHDISWFRNN--RLI---KL--DS--------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       191 ~~~~~~~~~W~~~~--~~~---~~--~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      . .  +.+.|++..  ..+   ..  ..        ..++.....   ......|.|.+++.+|+|.|.|.|.|..|.
T Consensus       164 ~-~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          164 S-H--NYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRT---TQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             C-C--SEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECC---SSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             C-c--eEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeC---CCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            5 4  789999832  111   00  00        000110000   012357999999999999999999987664

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.84  E-value=1.9e-19  Score=142.25  Aligned_cols=185  Identities=16%  Similarity=0.272  Sum_probs=122.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--ee---C--------------CCCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KP---A--------------TPNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~---~--------------~~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..|....+.+|++|+|.|.+.+.+  .+.+.|||..  ..   +              ....++.+..+  .+..+|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (223)
T 1dee_B            5 VESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMN   84 (223)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             EcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEEC
Confidence            345677899999999999998765  4789999843  11   1              01246665542  346789999


Q ss_pred             cCCCCCCeEEEEEEEeCCe------eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEE
Q psy1095         127 EVTLEDAGLYTIKVENNYG------SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISW  200 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W  200 (325)
                      +++.+|+|.|.|.+.+..+      .......|.|...+  ..+|.+........+..|+.+.|.|.+.+..+....+.|
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  162 (223)
T 1dee_B           85 SLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS--ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW  162 (223)
T ss_dssp             SCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC--CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCC--CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence            9999999999999987642      11233567776421  134555432222345689999999999987432149999


Q ss_pred             ee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCC--CCCeEEEEEEEeCCCcEEeEE
Q psy1095         201 FR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP--EDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      ++ ++..+.........  ..+..+...+.|.|.....  +|.|.|+|.|.|..+......
T Consensus       163 ~~~~g~~l~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          163 KYKNNSDISSTRGFPSV--LRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EETTSCBCSCEEECCCE--EETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             EccCCCccceeEECCcc--ccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            99 88776430000000  1122333456788988776  889999999999988765543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.84  E-value=3.1e-20  Score=146.65  Aligned_cols=182  Identities=18%  Similarity=0.220  Sum_probs=116.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCC---eeEEeeCCeeCC----------------CCCcEEEE-------ecCCeEEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAP---WTSWSKDGKPAT----------------PNARVTIR-------EKEDLRFLE  124 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~---~v~W~~~~~~~~----------------~~~~~~~~-------~~~~~~~l~  124 (325)
                      .|..+.+.+|++|+|.|.+.+.+.+   .|+|+|++..+.                ...+....       ......+|.
T Consensus         7 vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~   86 (225)
T 4fmk_A            7 VLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA   86 (225)
T ss_dssp             CCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE
T ss_pred             eCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE
Confidence            3455678899999999999887665   479999764321                01111111       112345699


Q ss_pred             EccCCCCCCeEEEEEEEeCCeeEE-EEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC
Q psy1095         125 ISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN  203 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~  203 (325)
                      |.+++.+|+|.|+|.+.+..+... ....+.+...      |.....+.......++.+.+.|.+.+.+++ +.+.|+++
T Consensus        87 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~-~~~~w~~~  159 (225)
T 4fmk_A           87 FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQ------PENHAEAQEVTIGPQSVAVARCVSTGGRPP-ARITWISS  159 (225)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC------CEEEEEECCBCCSSSCEEEEEEEEEEEBSC-CEEEEECS
T ss_pred             EccCCHHHCcceEEEEEeCCCcceeeeeeeeeecC------CceeecccceeecceeeeeeeeeecCCCCC-CEEEEEEC
Confidence            999999999999999987655433 3344444443      333333334445567778888877654433 88999988


Q ss_pred             CEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         204 NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      +..+.....   .....+......+.|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus       160 ~~~~~~~~~---~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          160 LGGEAKDTQ---EPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             SCCEEEEEE---EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             CccccCCcc---eEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            765432111   00112222334568999999999999999999998876654444443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.84  E-value=2.8e-20  Score=144.64  Aligned_cols=172  Identities=13%  Similarity=0.165  Sum_probs=114.3

Q ss_pred             ceEecCCCeEEEEEEEE----ecCCCeeEEeeCCeeCCC------------CCcEEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095          74 NKICDLGDTVRFQCSVT----GQPAPWTSWSKDGKPATP------------NARVTIREKEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~----~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      ++.+.+|+++.|.|.+.    +.|.+.+.|++++..+..            ..+..+. ..+..+|.|.+++.+|+|.|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEE
Confidence            45688999999999985    346678999999876520            1122221 223457999999999999999


Q ss_pred             EEEEeCCeeE-----EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCC
Q psy1095         138 IKVENNYGSV-----EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDS  211 (325)
Q Consensus       138 C~~~~~~~~~-----~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~  211 (325)
                      |.+.+..+..     ...+.|.|...+   ..|.+....    ...|+.+.|.|.+. +.|.  +.+.|++++..+....
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~---~~p~~~~~~----~~~g~~~~l~C~~~~g~P~--p~i~W~k~g~~l~~~~  152 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADF---PTPSISDFE----IPTSNIRRIICSTSGGFPE--PHLSWLENGEELNAIN  152 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCC---CCCEEEEEE----CSSTTEEEEEEEEEEESSC--EEEEEEESSCEECCSE
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCC---CCCceEecc----CCCCCeEEEEEecCCccCC--CEEEEEECCEECcccc
Confidence            9999865422     456677776642   234433221    13488999999995 8887  8999999998876432


Q ss_pred             CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095         212 DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC  259 (325)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  259 (325)
                      . .......+........+.   +..+|.|.|+|.|.|..+.....+.
T Consensus       153 ~-~~~~~~~~~~~~~~~~~~---v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          153 T-TVSQDPETELYAVSSKLD---FNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             E-EEEECTTTCCEEEEEEEE---EETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             c-eEEecCCCcEEEEEEEEE---EEecCCCEEEEEEecCcceeeeEEe
Confidence            1 111111111222223333   4458999999999999887765443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.84  E-value=7.5e-20  Score=147.57  Aligned_cols=179  Identities=16%  Similarity=0.228  Sum_probs=120.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC-----------------CCCCcEEEEec--CCeEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA-----------------TPNARVTIREK--EDLRFLE  124 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~-----------------~~~~~~~~~~~--~~~~~l~  124 (325)
                      ++..|.+..+.+|++|+|.|.+.+.+  .+.+.|+|.  +..+                 ....++.+..+  ....+|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            45667788899999999999998744  678999982  2110                 01235555432  3366799


Q ss_pred             EccCCCCCCeEEEEEEEeCCeeE-EEEEEEEEECCC---------cccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC
Q psy1095         125 ISEVTLEDAGLYTIKVENNYGSV-EATARLEIMDPR---------AIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN  194 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~---------~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~  194 (325)
                      |.+++.+|+|.|+|.+.+..+.. .....|.|....         ....++.+...+....+.+|+.++|.|.+.+.+. 
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~-  162 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVD-  162 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCE-
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccc-
Confidence            99999999999999998855433 244566666420         1122456666666678899999999999988665 


Q ss_pred             CC----eeEEeeC--CEEec---c-------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         195 DH----DISWFRN--NRLIK---L-------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       195 ~~----~~~W~~~--~~~~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                       +    .+.|+++  +..+.   .       ....+......+    ....|.|.+++.+|+|.|.|.+.|..+
T Consensus       163 -~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~~~n~~~  231 (253)
T 3uzq_A          163 -RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSR----TDFTLTINPVEADDVATYFCQRSNEVP  231 (253)
T ss_dssp             -ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             -cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCC----CEEEEEECCCCHHHCEEEEEEEccCCC
Confidence             4    8999984  22111   0       000111111111    346799999999999999999988643

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.84  E-value=1.7e-19  Score=145.77  Aligned_cols=181  Identities=15%  Similarity=0.241  Sum_probs=119.2

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEec--CCCeeEEeeCC--e---eC-------------CCCCcEEEEec--CCeEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDG--K---PA-------------TPNARVTIREK--EDLRF  122 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~--~---~~-------------~~~~~~~~~~~--~~~~~  122 (325)
                      ++..+..|.+..+.+|++|+|.|.+.+.  +.+.+.|+|..  .   .+             ....++.+...  ....+
T Consensus         8 ~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   87 (257)
T 3gkz_A            8 KEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVY   87 (257)
T ss_dssp             -CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred             ccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEE
Confidence            3444566777789999999999999884  47899999832  1   11             11235555432  34568


Q ss_pred             EEEccCCCCCCeEEEEEEEeC----CeeEEEEEEEEEECCCc--------ccCCCeeeecCcCeeEecCCcEEEEEEEEe
Q psy1095         123 LEISEVTLEDAGLYTIKVENN----YGSVEATARLEIMDPRA--------IISRPKVLNGLENLRCCDGDSVTFECQVQV  190 (325)
Q Consensus       123 l~i~~~~~~d~G~Y~C~~~~~----~~~~~~~~~l~v~~~~~--------~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~  190 (325)
                      |.|.+++.+|+|.|.|.+.+.    .........|.|...+.        ....+.+...+....+.+|+.++|.|.+.+
T Consensus        88 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  167 (257)
T 3gkz_A           88 LQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASS  167 (257)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESS
T ss_pred             EEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEcc
Confidence            999999999999999999886    22223345666654310        112355555566678899999999999988


Q ss_pred             cCCCCC-eeEEeeC--CEEec---cCC-------CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         191 VPPNDH-DISWFRN--NRLIK---LDS-------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       191 ~~~~~~-~~~W~~~--~~~~~---~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .+.  + .+.|++.  +..+.   ...       ..+......+    ....|.|.+++.+|+|.|.|.+.+..
T Consensus       168 ~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          168 SVS--SSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSG----TSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             CCC--GGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             Ccc--ceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCC----CEEEEEECCCChHHCEEEEEEEccCC
Confidence            766  5 8999983  22211   000       0111111111    34679999999999999999998754

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.83  E-value=2.3e-19  Score=147.06  Aligned_cols=177  Identities=16%  Similarity=0.278  Sum_probs=119.5

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeCC-----------------CCCcEEEEe--cCCeEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPAT-----------------PNARVTIRE--KEDLRFLE  124 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~--~~~~~~l~  124 (325)
                      +...|....+.+|++|+|.|.+.+.+  .+.+.|+|++  ..+.                 ...++.+..  .....+|.
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  108 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ  108 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence            45567788899999999999998764  5789999853  1110                 124555544  23457899


Q ss_pred             EccCCCCCCeEEEEEEEeCCe---e--EEEEEEEEEECCCcc---------cCCCeeeecCcCeeEecCCcEEEEEEEEe
Q psy1095         125 ISEVTLEDAGLYTIKVENNYG---S--VEATARLEIMDPRAI---------ISRPKVLNGLENLRCCDGDSVTFECQVQV  190 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~---~--~~~~~~l~v~~~~~~---------~~~p~~~~~~~~~~v~~g~~v~l~C~~~~  190 (325)
                      |.+++.+|+|.|.|.+.+..+   .  ......|.|...+..         ..++.+...+....+.+|+.++|.|.+.+
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  188 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS  188 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence            999999999999999998754   1  123446777664310         12344555555667889999999999987


Q ss_pred             cCCCCCeeEEee--CCEEecc----------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         191 VPPNDHDISWFR--NNRLIKL----------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       191 ~~~~~~~~~W~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .+   +.+.|+|  ++..+..          ....+......+    ....|.|.+++.+|+|.|.|.+.+..
T Consensus       189 ~~---~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~a~~~~  254 (282)
T 1qok_A          189 SV---SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSG----TSYSLTISRMEAEDAATYYCQQRSSY  254 (282)
T ss_dssp             CC---SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CC---ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCC----CEEEEEEccCChhHCEEEEEEEeeCC
Confidence            66   5799999  5543310          001111111111    34689999999999999999998753

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.83  E-value=1.2e-19  Score=147.61  Aligned_cols=185  Identities=16%  Similarity=0.210  Sum_probs=119.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecC-----CCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQP-----APWTSWSKDG--KPA------------TPNARVTIREKEDLRFLE  124 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-----~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~  124 (325)
                      ..+.+...|....+.+|++++|.|.+.+.+     .+.+.|+|+.  ...            ....++.+...+...+|.
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            456777788888899999999999998766     4789999853  211            013466665555667899


Q ss_pred             EccCCCCCCeEEEEEEEeCCee-EEEEEEEEEECCCccc---CCC--------------eeeecCcCeeEecCCcEEEEE
Q psy1095         125 ISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAII---SRP--------------KVLNGLENLRCCDGDSVTFEC  186 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~---~~p--------------~~~~~~~~~~v~~g~~v~l~C  186 (325)
                      |.+++.+|+|.|.|.+.+..+. ......|.|...+...   .+|              .....+....+.+|+.++|.|
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C  173 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC  173 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence            9999999999999999876432 2223455665432100   011              122233456788999999999


Q ss_pred             EEEecCCCCCeeEEeeC--CEEec----c-------------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         187 QVQVVPPNDHDISWFRN--NRLIK----L-------------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       187 ~~~~~~~~~~~~~W~~~--~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      .+.+.++..+.+.|+++  +..+.    .             ....+.....+.  ......|.|.+++.+|+|.|.|.+
T Consensus       174 ~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a  251 (268)
T 1x9q_A          174 VTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDD--SKSSVYLQMNNLRVEDTGIYYCTG  251 (268)
T ss_dssp             EEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeC--CCCEEEEEECCCCHHHCEEEEEEE
Confidence            99887643378999984  22210    0             001111111110  012367999999999999999999


Q ss_pred             EeC
Q psy1095         248 ANE  250 (325)
Q Consensus       248 ~~~  250 (325)
                      .+.
T Consensus       252 ~~~  254 (268)
T 1x9q_A          252 ASY  254 (268)
T ss_dssp             EET
T ss_pred             ccC
Confidence            874

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.83  E-value=1.7e-20  Score=147.82  Aligned_cols=186  Identities=19%  Similarity=0.225  Sum_probs=118.0

Q ss_pred             CCCCeeEecCCceE--ecCCCeEEEEEEEEec---CC-CeeEEeeCCeeCCCCCcEEEEe-cC----CeEEEEEccCCCC
Q psy1095          63 TSSPRFYAVPHNKI--CDLGDTVRFQCSVTGQ---PA-PWTSWSKDGKPATPNARVTIRE-KE----DLRFLEISEVTLE  131 (325)
Q Consensus        63 ~~~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---p~-~~v~W~~~~~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~  131 (325)
                      ..+|.+.+.|....  +.+|++++|.|.+.+.   |. +.|+|+|++..+.......... .+    ....|.|.+++.+
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence            35677766665544  7899999999999886   33 7899999998765432111111 11    1246999999999


Q ss_pred             CCeEEEEEEEeCCeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEecc
Q psy1095         132 DAGLYTIKVENNYGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL  209 (325)
Q Consensus       132 d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~  209 (325)
                      |+|.|+|.+.+..+..  ...+.+    ......+|.+...+.......|+.+.|.|.+.|.++....+.|++++..+..
T Consensus        87 D~g~Y~C~~~~~~~~~~~~~~v~~----~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  162 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPSPIERTISK----IKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEEN  162 (218)
T ss_dssp             TTCCEEEEEEETTCSSCEEEEECC----CCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECC
T ss_pred             CCCeEEEEEECCcCCCcceEEEee----cCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccC
Confidence            9999999999876533  222211    1111234665544333222358999999999985432149999999988743


Q ss_pred             CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ....... ...+..+...+.|.|.....+|.|.|+|.|.|....
T Consensus       163 ~~~~~~~-~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          163 YKDTAPV-LDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             EEECCCE-ECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             ceecccE-ECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            2111111 112223334456777766666799999999997654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.83  E-value=2.3e-20  Score=145.86  Aligned_cols=181  Identities=18%  Similarity=0.187  Sum_probs=116.2

Q ss_pred             eEecCCceE-ecCCCeEEEEEEEEecC----CCeeEEeeCCeeCCCCCcE-EEEecCC----eEEEEEccCCCCCCeEEE
Q psy1095          68 FYAVPHNKI-CDLGDTVRFQCSVTGQP----APWTSWSKDGKPATPNARV-TIREKED----LRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        68 ~~~~~~~~~-v~~g~~v~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~G~Y~  137 (325)
                      ++..|.... +.+|++++|.|.+.+.+    .+.|.|+|++..+...... .....++    ...|.|.+++.+|+|.|+
T Consensus         5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   84 (207)
T 2vol_A            5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFK   84 (207)
T ss_dssp             EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred             EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEE
Confidence            344555444 88999999999998874    2489999999776432100 0001111    246999999999999999


Q ss_pred             EEEEeCCeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCce
Q psy1095         138 IKVENNYGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP  215 (325)
Q Consensus       138 C~~~~~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  215 (325)
                      |.+.+..+..  .+.+.+    ......+|.+...+.......|+.+.|.|.+.+.+++.+.+.|+++|..+........
T Consensus        85 C~a~~~~~~~~~~~~v~~----~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  160 (207)
T 2vol_A           85 CRVNSAAFPAPIEKTISK----TKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQP  160 (207)
T ss_dssp             EEEECTTCSSCEEEEECC----CCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCC
T ss_pred             EEEEccCCCCceEEEecc----CCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCc
Confidence            9999877642  222222    0111234665544433223358999999999986553258999999998743221111


Q ss_pred             EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         216 EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       216 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      . ...+..+...+.|.|.....+|.|.|+|.|.|....
T Consensus       161 ~-~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          161 I-MDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             E-ECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             e-ECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            1 122223344567888777777899999999997653

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.83  E-value=1.2e-19  Score=143.92  Aligned_cols=181  Identities=20%  Similarity=0.294  Sum_probs=119.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC----CeeEEeeCC--eeCC----------------CCCcEEEEec--CCeEEEEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPA----PWTSWSKDG--KPAT----------------PNARVTIREK--EDLRFLEI  125 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~----~~v~W~~~~--~~~~----------------~~~~~~~~~~--~~~~~l~i  125 (325)
                      ..|....+.+|++++|.|.+.+.|.    +.+.|+|+.  ..+.                ...++.+..+  .+..+|.|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (228)
T 3bae_H            5 KESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI   84 (228)
T ss_dssp             EEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred             eCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence            3466778999999999999988764    789999852  2110                1235555432  24578999


Q ss_pred             ccCCCCCCeEEEEEEEeCCe------e---EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCC
Q psy1095         126 SEVTLEDAGLYTIKVENNYG------S---VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPND  195 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~~------~---~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~  195 (325)
                      .+++.+|+|.|.|.+.+..+      .   ......|.|...+  ..+|.+........+..|+.+.|.|.+.+. |.+ 
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p-  161 (228)
T 3bae_H           85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK--TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP-  161 (228)
T ss_dssp             CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC--CBCCEEEEECC-----CCSEEEEEEEEEEEBSSC-
T ss_pred             cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC--CCCCEEEEecccccccCCCCEEEEEEEccEeCCC-
Confidence            99999999999999987643      1   1123567776421  234555544333346789999999999987 541 


Q ss_pred             CeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         196 HDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       196 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      ..+.|++++..+....  .... ..+..+...+.|.|..+..+| |.|+|.|.|..+.....
T Consensus       162 ~~v~W~~~~~~~~~~~--~~~~-~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          162 VTLTWNSGSLSSGVHT--FPAV-LQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             CEEEEGGGTCCTTEEE--EEEE-EETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEEEEeeCCcccCceE--cCce-eCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            3999999876532110  0111 111233345689999988866 99999999998876543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.83  E-value=1.2e-18  Score=134.11  Aligned_cols=145  Identities=21%  Similarity=0.281  Sum_probs=105.0

Q ss_pred             CCeeeecCcCeeEec-CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         164 RPKVLNGLENLRCCD-GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~-g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      +|.+.. +....+.+ |+.+.|.|.+.+.+.+.+.+.|++++..+.......           ....|.|.+++.+|+|.
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----------~~~~L~i~~~~~~d~G~   70 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----------SNMEYRINKPRAEDSGE   70 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----------SEEEEEESSCCGGGCEE
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----------ccEEEEEecCCcccCEE
Confidence            355544 33455556 999999999998875336899999999886543221           23689999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeCC--------------------------------------eecC---CCCceEEEEe
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVKG--------------------------------------KDLT---SDGRLNIITV  281 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~~--------------------------------------~~~~---~~~~~~~~~~  281 (325)
                      |+|.+.|. +.....+.|.|...+.                                      ..+.   .++++.+...
T Consensus        71 Y~C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~  149 (190)
T 2wv3_A           71 YHCVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK  149 (190)
T ss_dssp             EEEEEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEEC
T ss_pred             EEEEEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecC
Confidence            99999998 7777766666643221                                      1100   1122222223


Q ss_pred             CCEEEEEEcCCC-CCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         282 GGTSVLTIEDIT-GDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       282 ~~~~~l~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                      +....|.|.++. .+|+|.|+|.|.|..|....++.|.|+.
T Consensus       150 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~V  190 (190)
T 2wv3_A          150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV  190 (190)
T ss_dssp             SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEEC
Confidence            334579999999 7999999999999999999999999863

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.83  E-value=1.1e-20  Score=147.14  Aligned_cols=159  Identities=19%  Similarity=0.229  Sum_probs=105.1

Q ss_pred             ecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095          77 CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus        77 v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      +.+|++++|.|.+   |.+.+.|+|++..+...       .....+|.|.+++.+|+|.|+|.+.+...   ..+.|.+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~   81 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYR   81 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEE
Confidence            4589999999998   78899999999876421       11224599999999999999999644321   12333333


Q ss_pred             CCC------------------------c-ccCCCeeeecCcCeeEe-cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC
Q psy1095         157 DPR------------------------A-IISRPKVLNGLENLRCC-DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD  210 (325)
Q Consensus       157 ~~~------------------------~-~~~~p~~~~~~~~~~v~-~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~  210 (325)
                      ...                        . ....+.+...  ...+. +|+.+.|.|.  +.|.  +.+.|++++..+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~v~~~G~~v~L~C~--g~p~--p~i~W~k~~~~l~~~  155 (204)
T 1sy6_A           82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT--PYKVSISGTTVILTCP--QYPG--SEILWQHNDKNIGGD  155 (204)
T ss_dssp             C------------------------------------CC--CCEEEEETTEEEEECS--CCCS--SCEEEEETTEEESCC
T ss_pred             EeccccccccccccccccccccccccccccccccceecC--CceeeecCCcEEEEcC--CCCC--CceEEEECCEECCCc
Confidence            000                        0 0001112111  22344 8999999998  6676  789999999988654


Q ss_pred             CCCceEEEecCCcceeEEEEEeCCC-CCCCCeEEEEEEEeCCCcE-EeEEEEE
Q psy1095         211 SDMKPEVQVDSKENLVIARLKIPHV-YPEDEGEFTCRVANELGEV-VTSACLI  261 (325)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~-~~~~~l~  261 (325)
                      ..........       ..|.|.++ +.+|+|.|+|.|.|..|.. ...+.|.
T Consensus       156 ~~~~~~~~~~-------~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          156 EDDKNIGSDE-------DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             TTCTTEEEET-------TEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             cCCceEecCC-------CEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            3222221123       38999999 9999999999999999863 3333443

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.83  E-value=6.7e-19  Score=140.01  Aligned_cols=188  Identities=19%  Similarity=0.243  Sum_probs=119.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--ee---C-------------CCCCcEEEEec--CCeEEEEEcc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KP---A-------------TPNARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~---~-------------~~~~~~~~~~~--~~~~~l~i~~  127 (325)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|||..  ..   +             ....++.+..+  .+..+|.|.+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (232)
T 1dn0_B            5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSS   84 (232)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECC
Confidence            345667899999999999998764  5789999842  11   1             01246665542  3456899999


Q ss_pred             CCCCCCeEEEEEEE--eCCe----eEEEEEEEEEECCCcccCCCeeeecCcCeeEecC-CcEEEEEEEEecCCCCCeeEE
Q psy1095         128 VTLEDAGLYTIKVE--NNYG----SVEATARLEIMDPRAIISRPKVLNGLENLRCCDG-DSVTFECQVQVVPPNDHDISW  200 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~--~~~~----~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g-~~v~l~C~~~~~~~~~~~~~W  200 (325)
                      ++.+|+|.|.|.+.  +..+    .......|.|...+  ..+|.+........+..| +.++|.|.+.+..+....+.|
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W  162 (232)
T 1dn0_B           85 VTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS--ASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSW  162 (232)
T ss_dssp             CCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC--CBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred             CCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCC--CCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            99999999999997  3211    12234567776521  134555432222334578 999999999987332149999


Q ss_pred             ee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCC--CCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         201 FR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP--EDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      ++ ++..+.........  ..+..+...+.|.|.....  +|.|.|+|.|.|..+.......+.
T Consensus       163 ~~~~g~~l~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~  224 (232)
T 1dn0_B          163 KYKNNSDISSTRGFPSV--LRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLP  224 (232)
T ss_dssp             EETTSCEECCEEECCCE--EETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECC
T ss_pred             EcCCCCceeeEEECCcc--ccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecC
Confidence            99 88776531000000  1122333456899998887  889999999999988766555444

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.83  E-value=1e-19  Score=145.97  Aligned_cols=186  Identities=18%  Similarity=0.311  Sum_probs=124.1

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEee--------------CCeeCCC----CCcEEEEec-CCeEEEEEc
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK--------------DGKPATP----NARVTIREK-EDLRFLEIS  126 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~--------------~~~~~~~----~~~~~~~~~-~~~~~l~i~  126 (325)
                      +.+...|....+.+|++++|.| ..+.+.+.+.|||              ++.....    ..++.+... ....+|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            4567778888899999999999 6667888999998              2211111    156655542 345689999


Q ss_pred             cCCCCCCeEEEEEEEeC----CeeEEEEEEEEEECCCcccCCCeeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEe
Q psy1095         127 EVTLEDAGLYTIKVENN----YGSVEATARLEIMDPRAIISRPKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWF  201 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~----~~~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~  201 (325)
                      +++.+|+|.|.|.+.+.    .........|.|........+|.+... +....+..|+.+.|.|.+.+.++....+.|+
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence            99999999999999852    223334456777653222234554432 2333455699999999999865532489999


Q ss_pred             eCCEEeccCCCCceEEEe-----cCCcceeEEEEEeCCCCCCC-CeEEEEEEEeCCC
Q psy1095         202 RNNRLIKLDSDMKPEVQV-----DSKENLVIARLKIPHVYPED-EGEFTCRVANELG  252 (325)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~  252 (325)
                      ++|..+............     .+..+...+.|.|.....+| .|.|+|.|.|...
T Consensus       162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            999988643211100000     12233345679999888888 9999999998654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.83  E-value=3.5e-19  Score=142.60  Aligned_cols=192  Identities=17%  Similarity=0.212  Sum_probs=124.6

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEec--CCCeeEEeeCC--eeC--------------C---CCCcEEEEecC--CeEE
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDG--KPA--------------T---PNARVTIREKE--DLRF  122 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~--~~~--------------~---~~~~~~~~~~~--~~~~  122 (325)
                      +.+...|..+.+.+|++++|.|.+.+.  +.+.+.|+|+.  ..+              .   ...++.+....  +..+
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence            346667778889999999999999875  56789999842  211              0   23466554332  4678


Q ss_pred             EEEccCCCCCCeEEEEEEEeCC------e-eEEEEEEEEEECCCcc---cCCCeeeecCcCeeEecCCcEEEEEEEEecC
Q psy1095         123 LEISEVTLEDAGLYTIKVENNY------G-SVEATARLEIMDPRAI---ISRPKVLNGLENLRCCDGDSVTFECQVQVVP  192 (325)
Q Consensus       123 l~i~~~~~~d~G~Y~C~~~~~~------~-~~~~~~~l~v~~~~~~---~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~  192 (325)
                      |.|.+++.+|+|.|.|.+.+..      . .......|.|...+..   ...+.+.. +....+..|+.+.|.|.+.+..
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~g~~  160 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL-PSIAETKLQKAGTYLCLLEKFF  160 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC-CCGGGGGSSSCEEEEEEEEEES
T ss_pred             EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC-CChhhcccCCCceEEEEEeeEE
Confidence            9999999999999999998752      1 1123457777753210   01122221 2223455799999999999874


Q ss_pred             CCCCeeEEeeCCE-EeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         193 PNDHDISWFRNNR-LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       193 ~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      +..+.+.|++++. .+.........  ..+..+...+.|.|..... | |.|+|.|.|..+.......+.+
T Consensus       161 P~~~~v~W~~~~~~~l~~~~~~~~~--~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          161 PDVIKIHWEEKKSNTILGSQEGNTM--KTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             SCCEEEEEEESSSCCCCCCEECCCE--ECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CCCeEEEEEcCCCEeecCcccccee--cCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            4337899999986 45322111111  1222334456899987765 5 9999999999887655544443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.83  E-value=1.1e-19  Score=145.35  Aligned_cols=186  Identities=15%  Similarity=0.256  Sum_probs=123.3

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--------------eeC---CCCCcEEEEe-cCCeEEEEEcc
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--------------KPA---TPNARVTIRE-KEDLRFLEISE  127 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--------------~~~---~~~~~~~~~~-~~~~~~l~i~~  127 (325)
                      +.+...|....+.+|++++|.|.+.+ +.+.+.|||..              ...   ....++.+.. .....+|.|.+
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   81 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   81 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred             cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence            34567788888999999999999865 77899999821              111   1123555544 33467899999


Q ss_pred             CCCCCCeEEEEEEEe--CC-eeEEEEEEEEEECCCcccCCCeeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC
Q psy1095         128 VTLEDAGLYTIKVEN--NY-GSVEATARLEIMDPRAIISRPKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN  203 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~--~~-~~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~  203 (325)
                      ++.+|+|.|.|.+.+  .. ........|.|........+|.+... +....+..|+.+.|.|.+.+.++....+.|+++
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  161 (240)
T 3q5y_A           82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  161 (240)
T ss_dssp             CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence            999999999999973  21 22333456677643222234555432 233345568999999999985443248999999


Q ss_pred             CEEeccCCCCce-EEEecCCcceeEEEEEeCCCCCCC-CeEEEEEEEeCCC
Q psy1095         204 NRLIKLDSDMKP-EVQVDSKENLVIARLKIPHVYPED-EGEFTCRVANELG  252 (325)
Q Consensus       204 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~  252 (325)
                      |..+........ .....+..+...+.|.|.....+| .|.|+|.|.|...
T Consensus       162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            998864322110 011222233345679999998888 7799999998754

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.83  E-value=9.7e-19  Score=155.20  Aligned_cols=179  Identities=14%  Similarity=0.158  Sum_probs=113.2

Q ss_pred             CCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCc--EEEEecCC----eEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNAR--VTIREKED----LRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~--~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      |....+.+|+.++|.|.+.+. | ...|+|++++..+.....  ......++    ...|.|.....+|.|.|+|.+.|.
T Consensus       304 p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~  383 (512)
T 1zvo_C          304 PAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHP  383 (512)
T ss_pred             CChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeC
Confidence            333446689999999999885 4 248999999987652111  01111111    245889999999999999999987


Q ss_pred             CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEE-EEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCC
Q psy1095         144 YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT-FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~-l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  222 (325)
                      .+... ...+..........+|.+...+...   .|+.+. |.|.+.|++++...+.|+++|..+............++.
T Consensus       384 ~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~d  459 (512)
T 1zvo_C          384 SLPPQ-RLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPG  459 (512)
T ss_pred             CCCCC-ceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCC
Confidence            65432 2222211100001234444333222   688899 999999976644689999999988654322111111221


Q ss_pred             -c-ceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         223 -E-NLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       223 -~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                       . +...+.|.|.....+|.|.|+|.|.|.....
T Consensus       460 g~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~  493 (512)
T 1zvo_C          460 STTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRT  493 (512)
T ss_pred             CCEEEEEEEEEECchhcCCCCeEEEEEEecCCCC
Confidence             1 3345678888888888999999999986543

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.83  E-value=3.1e-19  Score=146.03  Aligned_cols=191  Identities=15%  Similarity=0.248  Sum_probs=127.6

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC-------------C----CCCcEEEEec-CCeEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA-------------T----PNARVTIREK-EDLRFL  123 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~-------------~----~~~~~~~~~~-~~~~~l  123 (325)
                      ..+.+...|....+.+|++++|.|.+.+.+.+.+.|+|++  ...             .    ...++.+... ....+|
T Consensus        23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL  102 (279)
T 2wbj_D           23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL  102 (279)
T ss_dssp             CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEE
T ss_pred             ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEE
Confidence            3466777888889999999999999987788899999853  110             0    1245655542 456789


Q ss_pred             EEccCCCCCCeEEEEEEEeCCe------eEEEEEEEEEECCCcccCCCeeeecC-cCeeEecCCcEEEEEEEEecCCCCC
Q psy1095         124 EISEVTLEDAGLYTIKVENNYG------SVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTFECQVQVVPPNDH  196 (325)
Q Consensus       124 ~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~p~~~~~~-~~~~v~~g~~v~l~C~~~~~~~~~~  196 (325)
                      .|.+++.+|+|.|+|.+.+..+      .......|.|........+|.+.... ....+..|+.+.|.|.+.+.+++.+
T Consensus       103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~  182 (279)
T 2wbj_D          103 TVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  182 (279)
T ss_dssp             EESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCE
T ss_pred             EEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCc
Confidence            9999999999999999988321      11233567776532222345554332 2223447899999999998755336


Q ss_pred             eeEEeeCCEEeccCCCCce-EEE----ecCCcceeEEEEEeCCCCCCC-CeEEEEEEEeCCCcE
Q psy1095         197 DISWFRNNRLIKLDSDMKP-EVQ----VDSKENLVIARLKIPHVYPED-EGEFTCRVANELGEV  254 (325)
Q Consensus       197 ~~~W~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~  254 (325)
                      .+.|++++..+........ ...    ..+..+...+.|.|......| .|.|+|.|.|.....
T Consensus       183 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          183 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             EEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             EEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence            9999999988754321100 000    012233445679998887764 778999999976543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.83  E-value=7.6e-20  Score=148.06  Aligned_cols=181  Identities=14%  Similarity=0.204  Sum_probs=107.0

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------C--C----------CCcEEEE-ecCCeEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------T--P----------NARVTIR-EKEDLRFL  123 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------~--~----------~~~~~~~-~~~~~~~l  123 (325)
                      +|.+...|..+.+.+|++|+|.|.+.+.+.+.+.|+|..  ...      .  .          ..++... ......+|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            467777888889999999999999988888899999831  110      0  0          0111111 12234579


Q ss_pred             EEccCCCCCCeEEEEEEEeCCe---eEEEEEEEEEECCCccc-----------CCCeeeecCcCeeEecCCcEEEEEEEE
Q psy1095         124 EISEVTLEDAGLYTIKVENNYG---SVEATARLEIMDPRAII-----------SRPKVLNGLENLRCCDGDSVTFECQVQ  189 (325)
Q Consensus       124 ~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~-----------~~p~~~~~~~~~~v~~g~~v~l~C~~~  189 (325)
                      .|.+++.+|+|.|.|.+.+..+   .......|.|.......           ..+.+...+....+.+|+.++|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            9999999999999999988654   33344567776542111           135666666678899999999999887


Q ss_pred             ec-CCCCCeeEEeeCCE--Eec---c-C----C--CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         190 VV-PPNDHDISWFRNNR--LIK---L-D----S--DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       190 ~~-~~~~~~~~W~~~~~--~~~---~-~----~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      +. +.  +.+.|++...  .+.   . .    .  ..+..  ...........|.|.+++.+|+|.|.|.+.+
T Consensus       162 ~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          162 TSWWS--YYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYS--VNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             CCCSS--CEEEEEEECTTCCEEEEEEEETTSCCCEETTEE--ECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             CccCC--ceEEEeeeCCCCCcEEEEEECCcCCcccCCeEE--EEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            74 44  8999998431  110   0 0    0  00111  1100111235699999999999999999975

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.83  E-value=4.7e-20  Score=148.42  Aligned_cols=172  Identities=15%  Similarity=0.143  Sum_probs=117.5

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEE-EEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-IREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.|...|. ..+.+|++|+|.|.+.+ +.+.+.|+|++..+....... .........|.|.+++.+|+|.|+|.+.+
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            5678877776 56889999999999864 567899999886542110000 00112346799999999999999999975


Q ss_pred             CC-----eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEE
Q psy1095         143 NY-----GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV  217 (325)
Q Consensus       143 ~~-----~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  217 (325)
                      ..     ......+.|.|...   ..+|.+...+. ..+.+|+.++|.|.+.+. +  +.+.|+|++..+......... 
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~---~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~--~~~~w~k~g~~~~~~~~~~~~-  155 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGL---YEKPSLSAQPG-PTVLAGESVTLSCSSRSS-Y--DMYHLSREGEAHERRFSAGPK-  155 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECS---SCCCEEECSSC-TTCBTTCEEEEEEECSSC-C--SEEEEEETTSSCEECCBCBCC-
T ss_pred             cCCCccccccCCCEEEecccC---CCCcceEccCC-CccCCCCEEEEEEeCCCC-C--cEEEEEECCcccCcccccccc-
Confidence            42     12244566777653   23466655543 467899999999998754 3  689999998766533211100 


Q ss_pred             EecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       218 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                       ..+   .....|.|.+++  |+|.|+|.+.+..
T Consensus       156 -~~~---~~~~~l~I~~v~--D~G~Y~C~a~~~~  183 (257)
T 1b6u_A          156 -VNG---TFQADFPLGPAT--HGGTYRCFGSFRD  183 (257)
T ss_dssp             -SSS---CCBEEEEEEECC--SCEEEEEEEECSS
T ss_pred             -cCC---ceeEEEEecccc--cCEEEEEEEEcCC
Confidence             000   013689999998  9999999999753

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.82  E-value=9.4e-20  Score=138.75  Aligned_cols=157  Identities=16%  Similarity=0.276  Sum_probs=113.3

Q ss_pred             CCceEecCCCeEEEEEEEE--ecCCCeeEEee--CCeeC----------CCCCcEEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095          72 PHNKICDLGDTVRFQCSVT--GQPAPWTSWSK--DGKPA----------TPNARVTIREKEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~--~~p~~~v~W~~--~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      +..+.+.+|++|+|.|...  +.+.+.|.|++  ++..+          ....++.+...+   +|.|.+++..|+|.|+
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~   82 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYK   82 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEE
Confidence            3455688999999999542  24567899999  87765          234566555332   6999999999999999


Q ss_pred             EEEEeCCeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCce
Q psy1095         138 IKVENNYGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP  215 (325)
Q Consensus       138 C~~~~~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  215 (325)
                      |.+.+..+..  ...+.|.|...   ...|.+..        .+..+.|.|.+.+.|+  +.+.|++++..+. ..    
T Consensus        83 c~~~n~~g~~~~~~~~~L~V~~~---~~~P~i~~--------~~~~v~L~C~~~~~p~--~~~~W~~~g~~l~-~~----  144 (182)
T 1hnf_A           83 VSIYDTKGKNVLEKIFDLKIQER---VSKPKISW--------TCINTTLTCEVMNGTD--PELNLYQDGKHLK-LS----  144 (182)
T ss_dssp             EEEEETTSCEEEEEEEEEEEECC---CCCCEEEE--------ETTTTEEEEECSSCSS--CEEEEEESSCEEE-EE----
T ss_pred             EEEEeCCCceeEEEEEEEEEcCc---CCCCEEEE--------ccCcEEEEeEccCCCC--CEEEEEECCEECC-CC----
Confidence            9999887654  34567777764   23344432        2347999999988876  8999999998771 10    


Q ss_pred             EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         216 EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       216 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                           +      ..+.+.. ..+|+|.|+|.|.|..+.....+.+.
T Consensus       145 -----~------~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          145 -----Q------RVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             -----S------SCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             -----C------cEEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence                 1      1233332 47899999999999999888776664

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.82  E-value=9.9e-20  Score=148.14  Aligned_cols=188  Identities=16%  Similarity=0.275  Sum_probs=124.8

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC------------CC----CCcEEEEe-cCCeEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA------------TP----NARVTIRE-KEDLRFLEI  125 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~------------~~----~~~~~~~~-~~~~~~l~i  125 (325)
                      .+.+...|....+.+|++++|.|.+. .+.+.+.|||.  +...            ..    ..++.+.. ..+..+|.|
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            44566677778899999999999986 57789999982  2111            00    14555554 233578999


Q ss_pred             ccCCCCCCeEEEEEEEeC--CeeEEEEEEEEEECCCcccCCCeeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEee
Q psy1095         126 SEVTLEDAGLYTIKVENN--YGSVEATARLEIMDPRAIISRPKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWFR  202 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~--~~~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~  202 (325)
                      .+++.+|+|.|.|.+.+.  .........|.|........+|.+... +....+..|+.++|.|.+.+.+++...+.|++
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~  184 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  184 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence            999999999999999873  233334456777653322334554433 23334556999999999998766323899999


Q ss_pred             CCEEeccCCCCceEE-----EecCCcceeEEEEEeCCCCCCC-CeEEEEEEEeCCCc
Q psy1095         203 NNRLIKLDSDMKPEV-----QVDSKENLVIARLKIPHVYPED-EGEFTCRVANELGE  253 (325)
Q Consensus       203 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  253 (325)
                      +|..+..........     ...+..+...+.|.|.....+| .|.|+|.|.|....
T Consensus       185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            998875432110000     0012233345678888887777 99999999987543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.82  E-value=5.7e-20  Score=146.04  Aligned_cols=188  Identities=13%  Similarity=0.194  Sum_probs=120.8

Q ss_pred             CCCee-EecCCceEecCCCeEEEEEEEEec-CC-C-eeEEeeCCeeC-CCCCcEEEEecCC----eEEEEEccCCCCCCe
Q psy1095          64 SSPRF-YAVPHNKICDLGDTVRFQCSVTGQ-PA-P-WTSWSKDGKPA-TPNARVTIREKED----LRFLEISEVTLEDAG  134 (325)
Q Consensus        64 ~~p~~-~~~~~~~~v~~g~~v~l~C~~~~~-p~-~-~v~W~~~~~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~d~G  134 (325)
                      .+|.+ +..|....+.+|++++|.|.+.+. |. | .++|+++|..+ ...........++    ...|.|.+++.+|.|
T Consensus        11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g   90 (231)
T 2w59_A           11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGE   90 (231)
T ss_dssp             -CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCC
Confidence            35554 456766678899999999999884 64 4 99999998877 3322222111122    236999999999999


Q ss_pred             EEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCc
Q psy1095         135 LYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK  214 (325)
Q Consensus       135 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~  214 (325)
                      .|+|.+.+..+..  .+.+.|........+|.+...........+..+.|.|.+.+++++.+.+.|+++|..+.......
T Consensus        91 ~Y~C~~~~~~~~~--~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  168 (231)
T 2w59_A           91 RFTCTVQHEELPL--PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVT  168 (231)
T ss_dssp             CEEEEEECTTCSS--CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEE
T ss_pred             EEEEEEEcCCCCC--ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCccccc
Confidence            9999999876542  22333332111113455443322211123557999999999755337999999999886543111


Q ss_pred             e-EEEe--------cC-CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         215 P-EVQV--------DS-KENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       215 ~-~~~~--------~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      . ....        .+ ..+...+.|.|.....+|.|.|+|.|.|....
T Consensus       169 ~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          169 TAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             CccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            0 0011        11 23445578999888888999999999997654

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.82  E-value=1.9e-20  Score=146.02  Aligned_cols=142  Identities=15%  Similarity=0.162  Sum_probs=106.7

Q ss_pred             eeeecccCCCCcccCCCCCC------CCCCCCCcccCCCCCCCccccccccccccc-cc---------------------
Q psy1095          11 LSVKLTRPSGLMSGHSTPRS------TPRSTPPRSISPLSSRTFTPYSLNSAIRTR-RL---------------------   62 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~-~~---------------------   62 (325)
                      ..++|.+++..+......+.      ...+|.|.+++++|+|.|+|.+.|+..... .+                     
T Consensus        33 p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (207)
T 3rbs_A           33 AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEW  112 (207)
T ss_dssp             CEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEEEEEECTHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEEEEEEEccchhhhccccccccccc
Confidence            46788888887755433221      112588999999999999997766322110 00                     


Q ss_pred             --CCCCeeEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEE
Q psy1095          63 --TSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        63 --~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                        ..+|.+...+ ...+.+|+.+.|.|.+.|. |.|.++|+|++.++....++.  ...+..+|.|.+++.+|+|.|+|.
T Consensus       113 ~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~  189 (207)
T 3rbs_A          113 IRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSKKDAGIYEVI  189 (207)
T ss_dssp             HHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCC--CSSEEEEEEETTCCGGGCEEEEEE
T ss_pred             ccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceE--cCCCEEEEEECCCCcccCEEEEEE
Confidence              1367776655 4678999999999999998 999999999999987655432  233446799999999999999999


Q ss_pred             EEeCCeeEEEEEEEEE
Q psy1095         140 VENNYGSVEATARLEI  155 (325)
Q Consensus       140 ~~~~~~~~~~~~~l~v  155 (325)
                      +.|..|.....+.|.+
T Consensus       190 a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          190 LKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EEETTEEEEEEEEECC
T ss_pred             EEcCCCEEEEEEEEec
Confidence            9999998888777654

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.82  E-value=8.2e-19  Score=141.82  Aligned_cols=181  Identities=17%  Similarity=0.249  Sum_probs=120.0

Q ss_pred             EecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeC------C-----------CCCcEEEEec--CCeEEEEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPA------T-----------PNARVTIREK--EDLRFLEI  125 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~------~-----------~~~~~~~~~~--~~~~~l~i  125 (325)
                      ...|....+.+|++++|.|.+.+.+  .+.+.|||+.  ..+      .           ...++.+..+  .+..+|.|
T Consensus        10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   89 (261)
T 2xqy_G           10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQL   89 (261)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEE
Confidence            3456677899999999999998766  6789999863  211      0           0235555442  34578999


Q ss_pred             ccCCCCCCeEEEEEEEeCCe---eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee
Q psy1095         126 SEVTLEDAGLYTIKVENNYG---SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR  202 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~  202 (325)
                      .+++.+|+|.|.|.+.+..+   .......|.|...+  ..+|.+........+..|+.++|.|.+.+..+....+.|++
T Consensus        90 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k  167 (261)
T 2xqy_G           90 SSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK--TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS  167 (261)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--CBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCC--CCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEec
Confidence            99999999999999988542   11233567776522  13455544333334678999999999998633214999999


Q ss_pred             CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         203 NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      ++..+.........  .. ..+...+.|.|..+..+| |.|+|.|.|......
T Consensus       168 ~g~~~~~~~~~~~~--~~-g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~  216 (261)
T 2xqy_G          168 GSLSSGVHTFPAVL--QS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK  216 (261)
T ss_dssp             GTCCTTEEECCCEE--ET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             CCCcCceEecCcee--cC-CcEEEEEEEEEeccccCC-CEEEEEEEECCCCcc
Confidence            98754321111111  11 233345789999988888 999999999765543

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.82  E-value=1.4e-18  Score=133.52  Aligned_cols=147  Identities=22%  Similarity=0.339  Sum_probs=101.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+............+       ..|.|.+++.+|+|.|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y   72 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPA--PAVSWLYHNEEVTTISDNRFAMLAN-------NNLQILNINKSDEGIY   72 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSC--CEEEEEC-----CBCCCTTEEECTT-------SCEEETTCCGGGCEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCC--CEEEEEECCccceeccCCeEEEecC-------CCEEEeeCCHhHCcEE
Confidence            467777777889999999999999998877  8999999988776543333332222       3699999999999999


Q ss_pred             EEEEEeCCCcEE--eEEEEEEEeeC--------------------------------------CeecCCCCceEEEEeCC
Q psy1095         244 TCRVANELGEVV--TSACLIVDVVK--------------------------------------GKDLTSDGRLNIITVGG  283 (325)
Q Consensus       244 ~C~~~~~~~~~~--~~~~l~v~~~~--------------------------------------~~~~~~~~~~~~~~~~~  283 (325)
                      +|.+.+..+...  ..+.+.+...+                                      +..+..+.+..  ....
T Consensus        73 ~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~--~~~~  150 (189)
T 2v5t_A           73 RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI--LKGS  150 (189)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEE--EETT
T ss_pred             EEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEE--EecC
Confidence            999999875443  23333332222                                      11111111111  1112


Q ss_pred             EEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095         284 TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       284 ~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                      ...|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       151 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            34699999999999999999999999999999988864

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.82  E-value=4.9e-19  Score=136.48  Aligned_cols=148  Identities=26%  Similarity=0.430  Sum_probs=104.1

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+..... +......+      ..|.|.+++.+|+|.|
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~-~~~~~~~~------~~L~i~~~~~~d~G~Y   77 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQ--PEISWTRNKILIKLFDT-RYSIRENG------QLLTILSVEDSDDGIY   77 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESC--CEEEEEETTEECCTTCT-TEEEEGGG------TEEEESSCCGGGCEEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCC--CeEEEEECCEEccccCc-cEEEcCCc------cEEEEcCCCcccCeEE
Confidence            456666666678899999999999999887  79999999988764322 22222222      3699999999999999


Q ss_pred             EEEEEeCCCc-EEeEEEEEEEeeCC------------------------------------eecCCCCceEEEEeCCEEE
Q psy1095         244 TCRVANELGE-VVTSACLIVDVVKG------------------------------------KDLTSDGRLNIITVGGTSV  286 (325)
Q Consensus       244 ~C~~~~~~~~-~~~~~~l~v~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~  286 (325)
                      +|.+.|..+. ......|.|...+.                                    ..+..+.+...   .....
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~---~~~~~  154 (192)
T 2iep_A           78 CCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAV---LESGS  154 (192)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEE---CTTSC
T ss_pred             EEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEE---ecCCc
Confidence            9999998776 34444555533221                                    11111111111   01126


Q ss_pred             EEEcCCCCCCCeEEEEEEECCCeeEE-eEEEEEEeccc
Q psy1095         287 LTIEDITGDDSGKYQVHVSNQHGSDS-CYASVAVEGRK  323 (325)
Q Consensus       287 l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p  323 (325)
                      |.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus       155 L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          155 LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            99999999999999999999999885 46999998876

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.81  E-value=4.3e-19  Score=122.71  Aligned_cols=96  Identities=25%  Similarity=0.475  Sum_probs=88.2

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..||.|...|.+..+.+|+++.|.|.+.|.|.|.++|+|++..+....++.+...+...+|.|.+++.+|+|.|+|.+.|
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            35899999999999999999999999999999999999999999988888887777888999999999999999999999


Q ss_pred             CCeeEEEEEEEEEECC
Q psy1095         143 NYGSVEATARLEIMDP  158 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~  158 (325)
                      ..|.....+.|.|..+
T Consensus        91 ~~G~~~~~~~l~V~~p  106 (107)
T 3knb_B           91 AAGEAYAAAAVTVLEP  106 (107)
T ss_dssp             TTEEEEEEEEEEEEC-
T ss_pred             CCCEEEEEEEEEEEcC
Confidence            9999888889988764

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.81  E-value=3.1e-19  Score=140.25  Aligned_cols=185  Identities=17%  Similarity=0.174  Sum_probs=133.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC--CcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN--ARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+|.| ..|....+.+|+.+.|.|.+.+.|.|.+.|++++..+...  .++.+........|.|.+++..|+|.|+|.+.
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            46777 5677788999999999999999999999999999998765  45666655667889999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec----CCCCCeeEEeeCCEEeccCCCCceEE
Q psy1095         142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV----PPNDHDISWFRNNRLIKLDSDMKPEV  217 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~~~~~W~~~~~~~~~~~~~~~~~  217 (325)
                      |..|.....+.|.|...|.   +|....     ....+..+.|.|.....    |.....+.|.+++......    ...
T Consensus        97 n~~g~~~~~~~l~v~~~P~---~p~~~~-----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~----~~~  164 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPS---SPSIDQ-----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS----KWY  164 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCC---CCEEEE-----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE----EEE
T ss_pred             ECCCceEEEEEEEECCCCC---CCcceE-----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc----ccc
Confidence            9999888888888876643   233221     12346778899874321    2101247788776432110    000


Q ss_pred             EecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       218 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      ....  ......|.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       165 ~~~~--~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          165 DAKE--ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             EHHH--HHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             cccc--ccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence            0000  0001379999999999999999999999987766666553

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.81  E-value=1e-18  Score=137.98  Aligned_cols=181  Identities=14%  Similarity=0.259  Sum_probs=118.4

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCCe--eC------C-------------CCCcEEEEec--CCeEEEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDGK--PA------T-------------PNARVTIREK--EDLRFLE  124 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~~--~~------~-------------~~~~~~~~~~--~~~~~l~  124 (325)
                      ..|....+.+|++|+|.|.+.+.+  .+.+.|||...  ..      .             ...++.+..+  ....+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (221)
T 3m8o_H            5 VESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQ   84 (221)
T ss_dssp             EEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEE
T ss_pred             EccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEE
Confidence            445667799999999999998743  57899997421  10      0             1245555432  3456899


Q ss_pred             EccCCCCCCeEEEEEEEeCC--eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEe
Q psy1095         125 ISEVTLEDAGLYTIKVENNY--GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWF  201 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~  201 (325)
                      |.+++.+|+|.|.|.+.+..  ........|.|...+  ..+|.+........ .+|+.++|.|.+.+..+. .+.+.|+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~--~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~  161 (221)
T 3m8o_H           85 MNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS--PTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWS  161 (221)
T ss_dssp             ECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC--CBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEES
T ss_pred             ECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCC--CCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEE
Confidence            99999999999999998753  222333456665321  23455542222222 689999999999984432 2589999


Q ss_pred             eCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      +++..+...... ......+..+...+.|.|.....+|.|.|+|.|.+..+..
T Consensus       162 ~~g~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          162 ESGQGVTARNFP-PSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             CCSTTCEEEECC-CEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             ECCEECceEEcC-ceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            988766321110 0000122233345679999999999999999999987543

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.81  E-value=5.1e-19  Score=142.48  Aligned_cols=181  Identities=15%  Similarity=0.240  Sum_probs=105.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeC------C-----------CCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPA------T-----------PNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~------~-----------~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|||..  ..+      .           ...++.+..+  .+..+|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (257)
T 3bn9_D            5 VQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMS   84 (257)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEE
T ss_pred             EccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEEC
Confidence            345567799999999999998765  5789999853  111      0           1245555443  356789999


Q ss_pred             cCCCCCCeEEEEEEEeCCe-------------eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCC
Q psy1095         127 EVTLEDAGLYTIKVENNYG-------------SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPP  193 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~  193 (325)
                      +++.+|+|.|.|.+.+..+             .......|.|...+  ..+|.+........+..|+.++|.|.+.+..+
T Consensus        85 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~--~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P  162 (257)
T 3bn9_D           85 SLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  162 (257)
T ss_dssp             SCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC--CBCCEECCCCC-----------CCCEEEEEBS
T ss_pred             CCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC--CcCCcEEEecCcccccCCCcEEEEEEEeeEEC
Confidence            9999999999999987653             11123467776521  13455544333334567999999999998733


Q ss_pred             CCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         194 NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       194 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      ....+.|++++..+..... ... ...+..+...+.|.|.++..+| |.|+|.|.|......
T Consensus       163 ~pi~v~W~k~g~~~~~~~~-~~~-~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~  221 (257)
T 3bn9_D          163 EPVTVSWNSGALTSGVHTF-PAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  221 (257)
T ss_dssp             SCCEEEETTTTCCSSCEEC-CCE-ECTTSCEEEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred             CCcEEEEeeCCCcCCcEec-CCe-EcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence            2149999999876421111 001 1222233445789999888888 999999999765433

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.81  E-value=7.4e-19  Score=144.62  Aligned_cols=179  Identities=16%  Similarity=0.233  Sum_probs=115.3

Q ss_pred             EecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeCC-----------------CCCcEEEEe--cCCeEEEEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPAT-----------------PNARVTIRE--KEDLRFLEI  125 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~--~~~~~~l~i  125 (325)
                      ...|....+.+|++++|.|.+.+.+  .+.+.|+|+.  ....                 ...++.+..  .....+|.|
T Consensus        26 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  105 (291)
T 2gki_A           26 LQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMEL  105 (291)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEE
T ss_pred             EEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEE
Confidence            3456678899999999999998766  5789999853  1110                 013444433  234578999


Q ss_pred             ccCCCCCCeEEEEEEEeCC-e--e--EEEEEEEEEECC----------CcccCCCeeeecCcCeeEecCCcEEEEEEEEe
Q psy1095         126 SEVTLEDAGLYTIKVENNY-G--S--VEATARLEIMDP----------RAIISRPKVLNGLENLRCCDGDSVTFECQVQV  190 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~-~--~--~~~~~~l~v~~~----------~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~  190 (325)
                      .+++.+|+|.|.|.+.+.. +  .  ......|.|...          +....++.+...+....+.+|+.++|.|.+.+
T Consensus       106 ~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  185 (291)
T 2gki_A          106 SSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQ  185 (291)
T ss_dssp             CSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESS
T ss_pred             CcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCC
Confidence            9999999999999998763 1  1  112345666551          01112334444455567899999999999987


Q ss_pred             cCCCC----CeeEEeeCC--EE---eccCC-------CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         191 VPPND----HDISWFRNN--RL---IKLDS-------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       191 ~~~~~----~~~~W~~~~--~~---~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .+.+.    +.+.|+|+.  ..   +....       ..+......+    ....|.|.+++.+|+|.|.|.+.+..
T Consensus       186 ~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          186 SLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG----TDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             CCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             ccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecC----CEEEEEECCCCHHHCEEEEEEEccCC
Confidence            76510    189999953  21   11000       1111111111    24689999999999999999999854

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.80  E-value=1.8e-19  Score=136.11  Aligned_cols=152  Identities=14%  Similarity=0.224  Sum_probs=108.9

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC------------CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP------------NARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+.+.+|++|+|.|.+. .|.+.+.|++++..+..            ..++.+  .....+|.|.+++..|+|.|.|.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL--DTVSGSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE--CTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEE--eCCCCeEEECCCChhhCceEEEEEe
Confidence            45688999999999984 48889999998764321            112222  1233569999999999999999998


Q ss_pred             eCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC
Q psy1095         142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS  221 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  221 (325)
                      +..+  ...+.|.|..++   ..|.+.....        ...|.|.+.+.|.  +.+.|++++..+.....         
T Consensus        81 n~~~--~~~~~L~V~~~~---~~p~i~~~~~--------~~~L~C~~~~~p~--p~i~W~~~~~~l~~~~~---------  136 (171)
T 1ccz_A           81 NITD--TMKFFLYVLEMV---SKPMIYWECS--------NATLTCEVLEGTD--VELKLYQGKEHLRSLRQ---------  136 (171)
T ss_dssp             TCCS--CEEEEEEEECCC---CCCEEEEETT--------TTEEEEECSSCSS--CEEEEEETTEEEEEESS---------
T ss_pred             CCCC--cEEEEEEEECcC---CCCEEEEecC--------CcEEEEEeCCCCC--cEEEEEECCEECcCCcc---------
Confidence            7766  566778887652   2355443221        1379999988776  89999999988763221         


Q ss_pred             CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095         222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL  260 (325)
Q Consensus       222 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  260 (325)
                            ..|.+.  ...|.|.|+|.|.|..+.....+.|
T Consensus       137 ------~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          137 ------KTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             ------SEEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             ------eEEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence                  123333  3678999999999999887766544

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.80  E-value=1.3e-18  Score=138.92  Aligned_cols=184  Identities=15%  Similarity=0.240  Sum_probs=118.5

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---C------------CCCCcEEEEe-cCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---A------------TPNARVTIRE-KEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---~------------~~~~~~~~~~-~~~~~~l~i~~~~  129 (325)
                      +...|....+.+|++++|.|.+. .+.+.+.|||++  ..   +            ....++.+.. .....+|.|.+++
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   80 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT   80 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence            45667888899999999999984 467899999853  11   0            0123555443 2345789999999


Q ss_pred             CCCCeEEEEEEEeCCe-----eEEEEEEEEEECCCcccCCCeeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC
Q psy1095         130 LEDAGLYTIKVENNYG-----SVEATARLEIMDPRAIISRPKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN  203 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~  203 (325)
                      .+|+|.|.|.+.+..+     .......|.|........+|.+... +....+..|+.+.|.|.+.+.++..+.+.|+++
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  160 (238)
T 1bec_A           81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  160 (238)
T ss_dssp             GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred             cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence            9999999999987631     1122345777653222234555443 233345679999999999987432158999999


Q ss_pred             CEEeccCCCCc-eEEEecCCcceeEEEEEeCCCCCCC-CeEEEEEEEeCCC
Q psy1095         204 NRLIKLDSDMK-PEVQVDSKENLVIARLKIPHVYPED-EGEFTCRVANELG  252 (325)
Q Consensus       204 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~  252 (325)
                      +..+....... ......+..+...+.|.|......| .|.|+|.|.|...
T Consensus       161 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          161 GKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             CEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            98876442211 0011122222334556676555444 6789999999753

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.80  E-value=1.3e-18  Score=139.14  Aligned_cols=146  Identities=21%  Similarity=0.312  Sum_probs=103.0

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............     ....|.|.+++.+|+|.|+|.+.|..+
T Consensus        24 ~~~v~~G~~v~L~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~~~~   96 (241)
T 3grw_A           24 LLAVPAANTVRFRCPAAGNPT--PSISWLKNGREFRGEHRIGGIKLRH-----QQWSLVMESVVPSDRGNYTCVVENKFG   96 (241)
T ss_dssp             EEEEETTSEEEEECCEECSSC--CEEEEEETTEECCGGGSTTCCEEEG-----GGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEcCCCeEEEEEEecCCCC--ceeEEEECCcccCCCCcccceeeec-----cceEEEEEeCCcccCEEEEEEEeecCC
Confidence            467889999999999998877  8999999999886544332111111     124799999999999999999999988


Q ss_pred             cEEeEEEEEEEeeCCe------------ecCCCC--------------ceEEEE----e---------------------
Q psy1095         253 EVVTSACLIVDVVKGK------------DLTSDG--------------RLNIIT----V---------------------  281 (325)
Q Consensus       253 ~~~~~~~l~v~~~~~~------------~~~~~~--------------~~~~~~----~---------------------  281 (325)
                      .....+.|.|......            .+..+.              .+....    .                     
T Consensus        97 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~  176 (241)
T 3grw_A           97 SIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISE  176 (241)
T ss_dssp             EEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECS
T ss_pred             ceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeee
Confidence            8877777777542110            011011              111111    0                     


Q ss_pred             --CCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccCC
Q psy1095         282 --GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII  325 (325)
Q Consensus       282 --~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~i  325 (325)
                        .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.++|.+
T Consensus       177 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~  222 (241)
T 3grw_A          177 SVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA  222 (241)
T ss_dssp             BSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC------
T ss_pred             ecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCC
Confidence              02346999999999999999999999999999999999988753

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.80  E-value=2.4e-19  Score=142.95  Aligned_cols=186  Identities=18%  Similarity=0.182  Sum_probs=115.6

Q ss_pred             CCee-EecCCceE-ecCCCeEEEEEEEEec---CCC-eeEEeeCCeeCCCCCcE-EEEecC----CeEEEEEccCCCCCC
Q psy1095          65 SPRF-YAVPHNKI-CDLGDTVRFQCSVTGQ---PAP-WTSWSKDGKPATPNARV-TIREKE----DLRFLEISEVTLEDA  133 (325)
Q Consensus        65 ~p~~-~~~~~~~~-v~~g~~v~l~C~~~~~---p~~-~v~W~~~~~~~~~~~~~-~~~~~~----~~~~l~i~~~~~~d~  133 (325)
                      +|.+ ...|.... +.+|++++|.|.+.+.   |.+ .|+|+|++..+...... .....+    ....|.|.+++.+|+
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~   94 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG   94 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence            4444 44444333 7899999999999886   766 89999988665422100 001111    124699999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC
Q psy1095         134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM  213 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~  213 (325)
                      |.|+|.+.+..+.......  +........+|.+...........|+.+.|.|.+.+++++...+.|+++|..+......
T Consensus        95 g~Y~C~~~~~~~~~~~~~~--v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~  172 (239)
T 1i1c_A           95 KTFKCKVNSGAFPAPIEKS--ISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNT  172 (239)
T ss_dssp             CCEEEEEECSSSSSCEEEE--ECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred             CeEEEEEecccCCCCcEEE--EecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceec
Confidence            9999999987764322112  21111222456655444333233578899999999865533689999999987532111


Q ss_pred             ceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       214 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ... ...+..+...+.|.|.....+|.|.|+|.|.|....
T Consensus       173 ~~~-~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          173 PPT-MDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             CCE-ECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             Cce-ECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            111 112223334456777666556799999999997754

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.80  E-value=2.4e-18  Score=138.67  Aligned_cols=187  Identities=15%  Similarity=0.222  Sum_probs=120.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEec--CCCeeEEeeCCe-----eC--------------CCCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDGK-----PA--------------TPNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~~-----~~--------------~~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..|....+.+|++++|.|.+.+.  +...+.|||...     .+              ....++.+..+  .+..+|.|.
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (253)
T 3liz_H            5 VESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMS   84 (253)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEEC
T ss_pred             EcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence            34566789999999999999763  356899998421     11              01235555432  356779999


Q ss_pred             cCCCCCCeEEEEEEEeCC----eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee
Q psy1095         127 EVTLEDAGLYTIKVENNY----GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR  202 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~  202 (325)
                      +++.+|+|.|.|.+.+..    ........|.|....  ..+|.+........+..|+.+.|.|.+.+..+....+.|++
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  162 (253)
T 3liz_H           85 SLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK--TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (253)
T ss_dssp             SCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC--CBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC--CCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence            999999999999997652    222334566775321  23466654444445667999999999998433324899999


Q ss_pred             CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         203 NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      ++..+........  ... ..+...+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus       163 ~~~~~~~~~~~~~--~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~  218 (253)
T 3liz_H          163 GSLSSGVHTFPAV--LQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP  218 (253)
T ss_dssp             GTBCTTEEECCCE--EET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             CCeecceEeCCcc--ccC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence            8864321111111  111 233345789999999999 9999999999887766655544

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.80  E-value=1.6e-18  Score=132.02  Aligned_cols=154  Identities=14%  Similarity=0.237  Sum_probs=108.2

Q ss_pred             CceEecCCCeEEEEEEEEe-cCCCeeEEeeC-CeeCC------------CC--CcEEEEecCCeEEEEEccCCCCCCeEE
Q psy1095          73 HNKICDLGDTVRFQCSVTG-QPAPWTSWSKD-GKPAT------------PN--ARVTIREKEDLRFLEISEVTLEDAGLY  136 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~-~~~~~------------~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y  136 (325)
                      .++.+.+|++|+|.|.+.+ .+.+.+.|+|. +..+.            ..  .++.+  .....+|.|.+++.+|+|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEE
Confidence            4567899999999999744 34679999994 32211            11  34444  12335699999999999999


Q ss_pred             EEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceE
Q psy1095         137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE  216 (325)
Q Consensus       137 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  216 (325)
                      .|.+.+.. .....+.|.|..++   ..|.+..        .+..+.|.|.+...|.  +.+.|++++..+..       
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~~~~---~~P~i~~--------~~~~v~L~C~~~~gp~--p~i~W~~~~~~l~~-------  143 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVYEMV---SKPMIYW--------ECSNATLTCEVLEGTD--VELKLYQGKEHLRS-------  143 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEECCC---CCCEEEE--------EGGGTEEEEECSSCTT--CEEEEEETTEEEEE-------
T ss_pred             EEEEEcCC-eEEEEEEEEEECCC---CCCEEEe--------cCCCEEEEEEeCCCCC--CEEEEEECCeECcC-------
Confidence            99998766 55667788887642   2344332        3467999999933366  89999999988751       


Q ss_pred             EEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095         217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC  259 (325)
Q Consensus       217 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  259 (325)
                        ..+      ..|.+..  .+|+|.|+|.|.|..+.......
T Consensus       144 --~~~------~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          144 --LRQ------KTMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             --ESS------SEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             --CCC------CEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence              111      2455532  78999999999999987765543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.79  E-value=2.5e-19  Score=140.33  Aligned_cols=148  Identities=17%  Similarity=0.300  Sum_probs=114.7

Q ss_pred             ceeeecccCCCCcccCCCCCC----CCCCCCCcccCCCCCCCccccccccccccc---ccC-------------------
Q psy1095          10 SLSVKLTRPSGLMSGHSTPRS----TPRSTPPRSISPLSSRTFTPYSLNSAIRTR---RLT-------------------   63 (325)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~---~~~-------------------   63 (325)
                      ...++|.+++..+........    ...+|.|.+++.+|+|.|+|.+.+..+...   .+.                   
T Consensus        32 ~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~  111 (212)
T 2r15_A           32 DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI  111 (212)
T ss_dssp             SCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccc
Confidence            457888888776654332211    113489999999999999999987543211   110                   


Q ss_pred             ----CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEE
Q psy1095          64 ----SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-EDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        64 ----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                          .|+.+...|....+.+|+.+.|.|.+.+.|.|.+.|++++..+....++.+... +....|.|.+++.+|+|.|+|
T Consensus       112 ~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  191 (212)
T 2r15_A          112 AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL  191 (212)
T ss_dssp             HHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEE
T ss_pred             cccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEE
Confidence                333444456667899999999999999999999999999999988777776655 556789999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEEC
Q psy1095         139 KVENNYGSVEATARLEIMD  157 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~  157 (325)
                      .+.|..|.....+.|.|..
T Consensus       192 ~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          192 VVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEcCCCcEEEEEEEEEEc
Confidence            9999999888888888864

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.79  E-value=2.9e-18  Score=134.69  Aligned_cols=178  Identities=16%  Similarity=0.265  Sum_probs=114.2

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeC----------------CCCCcEEEEec--CCeEEEEEccC
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPA----------------TPNARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~----------------~~~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      .|....+.+|++++|.|.+.+.+  .+.+.|+|+.  ...                ....++.+..+  .+..+|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            46677899999999999998754  5789999853  211                01235555432  34568999999


Q ss_pred             CCCCCeEEEEEEEeCCe---eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCeeEEeeCC
Q psy1095         129 TLEDAGLYTIKVENNYG---SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHDISWFRNN  204 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~  204 (325)
                      +.+|+|.|.|.+.+..+   .......|.|...+  ..+|.+........+..|+.+.|.|.+.+. |.+ ..+.|++++
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g  162 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ--TTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEP-VTVTWNSGA  162 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC--CBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSC-CEEEEGGGT
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecCCC--CCCCeEEeccCChhhccCCcEEEEEEEeeeEcCC-cEEEEccCC
Confidence            99999999999987532   11223567776421  134555443323345689999999999987 541 399999988


Q ss_pred             EEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         205 RLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      ..+..... ...  ..+..+...+.|.  ....+| |.|+|.|.|..+.....
T Consensus       163 ~~~~~~~~-~~~--~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~  209 (215)
T 1c5d_H          163 LSSDVHTF-PAV--LQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVD  209 (215)
T ss_dssp             TCCSCCBC-CCE--EETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccCceEec-Ccc--cCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEE
Confidence            65432111 111  1112222223454  444456 99999999988775543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.79  E-value=1.5e-18  Score=137.65  Aligned_cols=146  Identities=23%  Similarity=0.309  Sum_probs=107.3

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............+     ...|.|.+++.+|+|.|+|.+.|..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~n~~   99 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPM--PTMRWLKNGKEFKQEHRIGGYKVRNQ-----HWSLIMESVVPSDKGNYTCVVENEY   99 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESC--CEEEEEETTEECCGGGSTTCCEEEGG-----GTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             eeEEEccCCCEEEEEecccCCC--CeEEEEECCccccccccccceeeecC-----cceEEEecCCcccCEEEEEEEeccc
Confidence            4667889999999999999887  79999999998865543322111111     2479999999999999999999998


Q ss_pred             CcEEeEEEEEEEeeCC---eecC-----------------------CCCceEEEEe---C--------------------
Q psy1095         252 GEVVTSACLIVDVVKG---KDLT-----------------------SDGRLNIITV---G--------------------  282 (325)
Q Consensus       252 ~~~~~~~~l~v~~~~~---~~~~-----------------------~~~~~~~~~~---~--------------------  282 (325)
                      +.....+.|.|.....   ..+.                       +...+.....   +                    
T Consensus       100 ~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  179 (231)
T 3ojm_B          100 GSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI  179 (231)
T ss_dssp             EEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECST
T ss_pred             CcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEeccccc
Confidence            8888777777754221   1100                       0011111110   1                    


Q ss_pred             ---CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         283 ---GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       283 ---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                         ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus       180 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  224 (231)
T 3ojm_B          180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ  224 (231)
T ss_dssp             TCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-
T ss_pred             ccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCC
Confidence               113599999999999999999999999999999999998773

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.79  E-value=1.8e-18  Score=138.19  Aligned_cols=187  Identities=14%  Similarity=0.230  Sum_probs=121.5

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC----CCeeEEeeCC--ee---C---C----------------CCCcEEEEec--CC
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP----APWTSWSKDG--KP---A---T----------------PNARVTIREK--ED  119 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~~~--~~---~---~----------------~~~~~~~~~~--~~  119 (325)
                      ..|....+.+|++|+|.|.+.+.+    ...+.||+..  ..   +   .                ...++.+..+  ..
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   84 (239)
T 3tv3_H            5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN   84 (239)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred             ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence            445667899999999999998755    3489999842  11   0   0                1134544432  44


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCe-------------eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEE
Q psy1095         120 LRFLEISEVTLEDAGLYTIKVENNYG-------------SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFEC  186 (325)
Q Consensus       120 ~~~l~i~~~~~~d~G~Y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C  186 (325)
                      ..+|.|.+++.+|+|.|.|.+.+..+             .......|.|...+  ..+|.+........+..|+.+.|.|
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~l~C  162 (239)
T 3tv3_H           85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGC  162 (239)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC--CBCCEEEEECCCCCC--TTEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC--CcCCEEEEECCChhhccCCcEEEEE
Confidence            67799999999999999999976421             11123355664321  2456666444444556799999999


Q ss_pred             EEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         187 QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       187 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      .+.+.++....+.|++++..+........  ...+..+...+.|.|.....+| |.|+|.|.|..+.......|.
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~--~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFPAV--LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCE--ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecCce--ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            99986553357899998864322111111  1223344455789999988888 999999999887666555443

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.79  E-value=2.3e-18  Score=140.85  Aligned_cols=179  Identities=14%  Similarity=0.244  Sum_probs=115.5

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEec--CCCeeEEeeCC--eeCC-----------------CCCcEEEE--ecCCeEEE
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDG--KPAT-----------------PNARVTIR--EKEDLRFL  123 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~--~~~~-----------------~~~~~~~~--~~~~~~~l  123 (325)
                      .+.. |....+.+|++|+|.|.+.+.  +.+.+.|||..  ....                 ...++.+.  ......+|
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (280)
T 3fku_X            3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM   81 (280)
T ss_dssp             CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred             eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence            3445 777889999999999999774  56789999742  1110                 01345554  23445689


Q ss_pred             EEccCCCCCCeEEEEEEEeC---------CeeEEEEEEEEEEC-CC--------cccCCCeeeecCcCeeEecCCcEEEE
Q psy1095         124 EISEVTLEDAGLYTIKVENN---------YGSVEATARLEIMD-PR--------AIISRPKVLNGLENLRCCDGDSVTFE  185 (325)
Q Consensus       124 ~i~~~~~~d~G~Y~C~~~~~---------~~~~~~~~~l~v~~-~~--------~~~~~p~~~~~~~~~~v~~g~~v~l~  185 (325)
                      .|.+++.+|+|.|.|.+.+.         .........|.|.. ..        ....++.+...+. ..+.+|+.++|.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~  160 (280)
T 3fku_X           82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLT  160 (280)
T ss_dssp             EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEE
T ss_pred             EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEE
Confidence            99999999999999999876         11222344566654 10        0012344444444 778899999999


Q ss_pred             EEEEecCCCCCeeEEeeC--CEEec---cC-------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         186 CQVQVVPPNDHDISWFRN--NRLIK---LD-------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       186 C~~~~~~~~~~~~~W~~~--~~~~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      |.+.+.+...+.+.|++.  +..+.   ..       ...++.....+    ....|.|.+++.+|+|.|.|.+.+..
T Consensus       161 C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          161 CTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSG----NTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEET----TEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccC----CEEEEEECCCCHHHCEEEEEEEecCC
Confidence            999873322278999873  22211   00       00111111122    34679999999999999999999876

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.79  E-value=1.2e-17  Score=129.00  Aligned_cols=152  Identities=17%  Similarity=0.356  Sum_probs=105.4

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCC---cceeEEEEEeCCCCCCC
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK---ENLVIARLKIPHVYPED  239 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d  239 (325)
                      +|.|...+....+.+|+.+.|.|.+. +.|.  +.+.|++++..+...............   .+.....|.|.+++.+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~--~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   79 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEP--PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD   79 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSC--CCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTT
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCC--cEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccC
Confidence            36677777888999999999999999 8777  889999999988755322222222211   11125789999999999


Q ss_pred             CeEEEEEEEeCCCcEEeE-EEEEEEeeCCe-------ecC--------------CCC-ceEEEEe----------CCEEE
Q psy1095         240 EGEFTCRVANELGEVVTS-ACLIVDVVKGK-------DLT--------------SDG-RLNIITV----------GGTSV  286 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~~~~~-~~l~v~~~~~~-------~~~--------------~~~-~~~~~~~----------~~~~~  286 (325)
                      +|.|+|.+.+..+..... +.|.|...+..       .+.              +.. .+.....          .....
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~  159 (195)
T 2c5d_C           80 TGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS  159 (195)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEE
T ss_pred             CcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCe
Confidence            999999999987654433 55655322211       011              111 1111111          13468


Q ss_pred             EEEcCCCCCCCeEEEEEEECCCeeEE-eEEEEEE
Q psy1095         287 LTIEDITGDDSGKYQVHVSNQHGSDS-CYASVAV  319 (325)
Q Consensus       287 l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V  319 (325)
                      |.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       160 L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          160 LHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            9999987  78999999999999986 7899998

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.79  E-value=3.4e-18  Score=136.00  Aligned_cols=187  Identities=13%  Similarity=0.163  Sum_probs=118.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCee--EEeeCCe-----eC-----C-----------CCCcEEEEec--CCeEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWT--SWSKDGK-----PA-----T-----------PNARVTIREK--EDLRF  122 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v--~W~~~~~-----~~-----~-----------~~~~~~~~~~--~~~~~  122 (325)
                      ..|....+.+|++|+|.|.+.+.+  ...+  .||+...     .+     .           ...++.+...  .+..+
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   84 (232)
T 3qhz_H            5 RESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVV   84 (232)
T ss_dssp             EEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEE
T ss_pred             EcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEE
Confidence            344556789999999999997632  2445  9997321     00     0           0135555433  35678


Q ss_pred             EEEccCCCCCCeEEEEEEEeCC--------eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC
Q psy1095         123 LEISEVTLEDAGLYTIKVENNY--------GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN  194 (325)
Q Consensus       123 l~i~~~~~~d~G~Y~C~~~~~~--------~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~  194 (325)
                      |.|.+++.+|+|.|.|.+.+..        ........|.|....  ..+|.+........+..|+.+.|.|.+.+.++.
T Consensus        85 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H           85 LTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             EEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC--CBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred             EEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC--CCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence            9999999999999999998652        122233456665321  245666544444456679999999999986654


Q ss_pred             CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       195 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      ...+.|++++..+........  ...+..+...+.|.|......| |.|+|.|.|..+.......|.
T Consensus       163 ~~~v~W~~~g~~~~~~~~~~~--~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~  226 (232)
T 3qhz_H          163 PVTVSWNSGALTSGVHTFPAV--LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  226 (232)
T ss_dssp             CCEEEEGGGTBCTTEEECCCE--ECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             CeEEEEEECCEecceeeccce--eCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeC
Confidence            367889998864322111111  1222334455789999998888 999999999887766555554

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.79  E-value=6.2e-19  Score=137.69  Aligned_cols=185  Identities=15%  Similarity=0.190  Sum_probs=108.5

Q ss_pred             CeeEecCCceEe--cCCCeEEEEEEEEecC----CCeeEEeeCCeeCCCCCcE-EEEecCCe----EEEEEccCCCCCCe
Q psy1095          66 PRFYAVPHNKIC--DLGDTVRFQCSVTGQP----APWTSWSKDGKPATPNARV-TIREKEDL----RFLEISEVTLEDAG  134 (325)
Q Consensus        66 p~~~~~~~~~~v--~~g~~v~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~l~i~~~~~~d~G  134 (325)
                      |.+...|....+  .+|+++.|.|.+.+.+    .+.|.|+|++.++...... .....++.    ..|.|......|+|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            555544444433  7999999999998864    3499999999876543110 01111221    12333333334599


Q ss_pred             EEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCc
Q psy1095         135 LYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK  214 (325)
Q Consensus       135 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~  214 (325)
                      .|+|.+.|..+.......+..  ......+|.+...........|..+.|.|.+.|.+++.+.+.|+++|..+.......
T Consensus        82 ~Y~C~a~n~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  159 (207)
T 1l6x_A           82 EYKCKVSNKALPAPIEKTISK--AKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTP  159 (207)
T ss_dssp             CEEEEEECTTSSSCEEEEECC--CCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred             eEEEEEEcCcCCcceEEEecc--CCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccC
Confidence            999999988764322222211  001123455544333222234667999999999655325999999998875321111


Q ss_pred             eEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         215 PEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       215 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      .. ...+..+...+.|.|......|.|.|+|.|.|....
T Consensus       160 ~~-~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          160 PV-LDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             CE-ECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             ce-ECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            11 112223334456777766667899999999997643

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.78  E-value=4e-18  Score=133.43  Aligned_cols=158  Identities=22%  Similarity=0.344  Sum_probs=103.7

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC---ceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM---KPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+......   .......+  ......|.|.+++.+|+
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~   84 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPT--PTIEWYKGGERVETDKDDPRSHRMLLPSG--SLFFLRIVHGRKSRPDE   84 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESC--CEEEEEETTEECCCTTTCTTCSEEECTTS--CEEESSCCCCSSCCCSC
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCC--CEEEEEECCEEeeccccccccceEEecCC--cEEEEEEEecCCCcccC
Confidence            466777777788999999999999998887  899999999887643321   11111111  11223455677899999


Q ss_pred             eEEEEEEEeCCCcE-EeEEEEEEEeeCCeec--------CCCCce-------------E-EEEeCC-------------E
Q psy1095         241 GEFTCRVANELGEV-VTSACLIVDVVKGKDL--------TSDGRL-------------N-IITVGG-------------T  284 (325)
Q Consensus       241 G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~--------~~~~~~-------------~-~~~~~~-------------~  284 (325)
                      |.|+|.+.|..+.. ...+.|.|...+....        ..+...             . .+..++             .
T Consensus        85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~  164 (212)
T 2v9r_A           85 GVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG  164 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEET
T ss_pred             eEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccC
Confidence            99999999988765 3345555533221100        000000             0 011111             1


Q ss_pred             EEEEEcCCCCCCCeEEEEEEECCCeeEEeE-EEEEEecccCC
Q psy1095         285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCY-ASVAVEGRKII  325 (325)
Q Consensus       285 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p~i  325 (325)
                      ..|.|.++..+|+|.|+|.|.|..|..... +.|.|.++|.|
T Consensus       165 ~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~  206 (212)
T 2v9r_A          165 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF  206 (212)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchH
Confidence            269999999999999999999999987765 89999999865

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.78  E-value=2.5e-19  Score=142.57  Aligned_cols=204  Identities=15%  Similarity=0.158  Sum_probs=113.3

Q ss_pred             CCccccccccccc--cccc-CCCCeeEecCCceE-ecCCCeEEEEEEEEecC----CCeeEEeeCCeeCCCCCcEE--EE
Q psy1095          46 RTFTPYSLNSAIR--TRRL-TSSPRFYAVPHNKI-CDLGDTVRFQCSVTGQP----APWTSWSKDGKPATPNARVT--IR  115 (325)
Q Consensus        46 G~Y~c~~~~~~~~--~~~~-~~~p~~~~~~~~~~-v~~g~~v~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~--~~  115 (325)
                      |.|.|...+....  ...+ ..|+.++..|.... +..|+.++|.|.+.+.+    ...|+|+++|..+.......  ..
T Consensus         1 ~~~~~~~~~~~~~c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~   80 (240)
T 4acp_A            1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ   80 (240)
T ss_dssp             ----------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC
T ss_pred             CceeeeeeecCCCCCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceEC
Confidence            6788887664431  1222 23444455555555 66799999999999853    34799999999875431110  11


Q ss_pred             ecCC---eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecC
Q psy1095         116 EKED---LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP  192 (325)
Q Consensus       116 ~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~  192 (325)
                      .++.   ...|.|.....+|.|.|+|.+.+..+.......+..  ......+|.+...........|+.+.|.|.+.+++
T Consensus        81 ~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~--~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~  158 (240)
T 4acp_A           81 YNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISK--AKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFY  158 (240)
T ss_dssp             ---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECC--CCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEB
T ss_pred             CCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccc--cCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEe
Confidence            1111   135777777777889999999987653222222211  01112456666554443334588999999999965


Q ss_pred             CCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         193 PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       193 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +....+.|++++..+......... ...+..+...+.|.+......+.|.|+|.|.+..-
T Consensus       159 P~~i~v~W~k~g~~~~~~~~~~~~-~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          159 PSDIAVEWESNGQPENNYKATPPV-LDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             SSCCEEEEEETTEECSSEEECCCE-ECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEECCEECCCcCccCce-ECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            543689999999886422111111 11222344556788877666778999999998754

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.78  E-value=7.3e-18  Score=135.21  Aligned_cols=188  Identities=14%  Similarity=0.235  Sum_probs=120.1

Q ss_pred             EecCCceEecCCCeEEEEEEEEe--cCCCeeEEeeCC--ee---C--------------CCCCcEEEEec--CCeEEEEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTG--QPAPWTSWSKDG--KP---A--------------TPNARVTIREK--EDLRFLEI  125 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~--~~---~--------------~~~~~~~~~~~--~~~~~l~i  125 (325)
                      ...|.+..+.+|++|+|.|.+.+  .+...+.||+..  ..   +              ....++.+..+  ....+|.|
T Consensus         3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   82 (248)
T 3u2s_H            3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQM   82 (248)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence            35567788999999999999975  235679999742  10   1              01245555432  34678999


Q ss_pred             ccCCCCCCeEEEEEEEeCC----------------------eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEE
Q psy1095         126 SEVTLEDAGLYTIKVENNY----------------------GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT  183 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~~----------------------~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~  183 (325)
                      .+++.+|+|.|.|.+.+..                      ........|.|...  ...+|.+........+..|+.+.
T Consensus        83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~--~~~~P~v~~~~~~~~~~~g~~~~  160 (248)
T 3u2s_H           83 NSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSA--STKGPSVFPLAPSSKSTSGGTAA  160 (248)
T ss_dssp             CSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSC--CCBCCEEEEECCC------CEEE
T ss_pred             CCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEccc--CCCCCEEEEeCCCccccCCCcEE
Confidence            9999999999999997631                      11222345666532  12456666444444556799999


Q ss_pred             EEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       184 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      |.|.+.+..+....+.|++++..+.......  ....+..+...+.|.|......| |.|+|.|.|..+.......+.
T Consensus       161 L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~--~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  235 (248)
T 3u2s_H          161 LGCLVKDYFPEPVTVSWNSGALTSGVHTFPA--VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  235 (248)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTBCTTEEECCC--EECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEeeEECCCeEEEEeECCccCceeecCc--eECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEc
Confidence            9999998655347899999886432211111  11223344455789999888888 999999999877665544443

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.78  E-value=6.5e-18  Score=115.30  Aligned_cols=94  Identities=33%  Similarity=0.607  Sum_probs=83.7

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC--cEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .||.|...|.+..+.+|+++.|.|.+.|.|.|.++|++++..+....  ++.+...++..+|.|.+++.+|+|.|+|.+.
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            46888888889999999999999999999999999999999987543  6677777778899999999999999999999


Q ss_pred             eCCeeEEEEEEEEEEC
Q psy1095         142 NNYGSVEATARLEIMD  157 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~  157 (325)
                      |..|.....+.|.|..
T Consensus        84 N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           84 NEFGSDSATVNIHIRS   99 (100)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCEEEEEEEEEEEE
Confidence            9999988888888753

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=140.32  Aligned_cols=184  Identities=14%  Similarity=0.275  Sum_probs=118.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---C---CC---------CC-cEEEEecCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---A---TP---------NA-RVTIREKEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---~---~~---------~~-~~~~~~~~~~~~l~i~~~~  129 (325)
                      +...|....+.+|++++|.|.+.+.+.+.+.|||..  ..   +   ..         .. ++.+....... |.|.+++
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~   82 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVAN   82 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEES
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCC
Confidence            455677788999999999999888888899999831  11   0   00         01 44444333333 9999999


Q ss_pred             CCCCeEEEEEEEeCCe------eEEEEEEEEEECCCcccCCCeeeecC-cCeeEecCCcEEEEEEEEecCCCCCeeEEee
Q psy1095         130 LEDAGLYTIKVENNYG------SVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTFECQVQVVPPNDHDISWFR  202 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~p~~~~~~-~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~  202 (325)
                      .+|+|.|.|.+.+..+      .......|.|........+|.+.... ....+..|+.++|.|.+.+.++....+.|++
T Consensus        83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k  162 (253)
T 3to4_D           83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  162 (253)
T ss_dssp             CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence            9999999999986532      22233466676533223445554332 2222335789999999999554324899999


Q ss_pred             CCEEeccCCCCceEEEe-----cCCcceeEEEEEeCCCCCCC-CeEEEEEEEeCCC
Q psy1095         203 NNRLIKLDSDMKPEVQV-----DSKENLVIARLKIPHVYPED-EGEFTCRVANELG  252 (325)
Q Consensus       203 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~  252 (325)
                      +|..+............     .+..+...+.|.|.....+| .|.|+|.|.+...
T Consensus       163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l  218 (253)
T 3to4_D          163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (253)
T ss_dssp             TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence            99988643211100000     22233345688888887777 7799999998653

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=1.1e-17  Score=132.82  Aligned_cols=181  Identities=13%  Similarity=0.171  Sum_probs=116.0

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec--CCCeeEEeeCC--ee---C-----C--------CCCcEEEEecC--CeEEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDG--KP---A-----T--------PNARVTIREKE--DLRFLEI  125 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~--~~---~-----~--------~~~~~~~~~~~--~~~~l~i  125 (325)
                      +...|....+.+|++++|.|.+.+.  +.+.+.|||..  ..   +     .        ...++.+..+.  +..+|.|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            4556777889999999999999764  56789999842  11   1     0        12455554322  4578999


Q ss_pred             ccCCCCCCeEEEEEEEeC--Ce--eEEEEEEEEEECCCc-----ccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCC
Q psy1095         126 SEVTLEDAGLYTIKVENN--YG--SVEATARLEIMDPRA-----IISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH  196 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~--~~--~~~~~~~l~v~~~~~-----~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~  196 (325)
                      .+++.+|+|.|.|.+.+.  ..  .......|.|.....     ....+.+.. +....+..|+.++|.|.+.+..+..+
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~  162 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVI  162 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCe
Confidence            999999999999999874  11  122335677762110     011222222 22233456889999999998743336


Q ss_pred             eeEEee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         197 DISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       197 ~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      .+.|++ ++..+.........  ..+..+...+.|.|..... + |.|+|.+.|....
T Consensus       163 ~v~W~~~~g~~l~~~~~~~~~--~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          163 RVYWKEKDGNTILDSQEGDTL--KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EEEEECTTSSCBCCCEECCCE--EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEEEEccCCeEccccccceee--cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            999999 77665432111111  2222333456899988775 4 8999999998764

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.77  E-value=2.2e-17  Score=129.79  Aligned_cols=153  Identities=20%  Similarity=0.358  Sum_probs=104.1

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............+  ......|.|.+++.+|+|.
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~i~~v~~~d~G~   83 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPE--PTIEWFKDGEPVSTNEKKSHRVQFKD--GALFFYRTMQGKKEQDGGE   83 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSC--CEEEEEETTEECCCSSSSSSEEECTT--SCEEESSCCBSSSCBCCEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCC--CeEEEEECCcCccCCCccceeEEecC--CceEEEEEeccCCcccCce
Confidence            4678888888888999999999999998877  89999999998875533222222222  1122334788999999999


Q ss_pred             EEEEEEeCCCcEE-eEEEEEEEeeCCee--------cCC-----------CC----ceEEEEeC----------------
Q psy1095         243 FTCRVANELGEVV-TSACLIVDVVKGKD--------LTS-----------DG----RLNIITVG----------------  282 (325)
Q Consensus       243 Y~C~~~~~~~~~~-~~~~l~v~~~~~~~--------~~~-----------~~----~~~~~~~~----------------  282 (325)
                      |+|.+.|..+... ..+.|.|...++..        +..           .+    .+. +..+                
T Consensus        84 Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~-W~~~g~~~~~~~~~~~~~~~  162 (217)
T 2vr9_A           84 YWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLI-WIKDGVPLDDLKAMSFGASS  162 (217)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEE-EEETTEEECCCCCC---CCC
T ss_pred             EEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEE-EEECCcCCCcccccccccCC
Confidence            9999999887653 24445443321110        000           00    000 1111                


Q ss_pred             -----CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEe
Q psy1095         283 -----GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       283 -----~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  320 (325)
                           ....|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus       163 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          163 RVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             SEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence                 11269999999999999999999999999888655554

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.76  E-value=6e-18  Score=136.27  Aligned_cols=186  Identities=12%  Similarity=0.207  Sum_probs=119.5

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---C------------CCCCcEEEEec-CCeEEEEEccC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---A------------TPNARVTIREK-EDLRFLEISEV  128 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---~------------~~~~~~~~~~~-~~~~~l~i~~~  128 (325)
                      .+...|....+.+|++++|.|.+. .+.+.+.||++.  ..   +            ....++.+... ....+|.|.++
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v   83 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   83 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence            456667788899999999999985 457899999853  11   0            01235554432 33467999999


Q ss_pred             CCCCCeEEEEEEEeCC---eeEEEEEEEEEECCCcccCCCeeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC
Q psy1095         129 TLEDAGLYTIKVENNY---GSVEATARLEIMDPRAIISRPKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN  204 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~  204 (325)
                      +.+|+|.|.|.+.+..   ........|.|........+|.+... +....+..|+.+.|.|.+.+.++..+.+.|++++
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  163 (252)
T 1oga_E           84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  163 (252)
T ss_dssp             CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence            9999999999998751   11222345666653222235655443 2222345689999999999864422589999999


Q ss_pred             EEeccCCCCc--eEE--E-ecCCcceeEEEEEeCCCCCC-CCeEEEEEEEeCCCc
Q psy1095         205 RLIKLDSDMK--PEV--Q-VDSKENLVIARLKIPHVYPE-DEGEFTCRVANELGE  253 (325)
Q Consensus       205 ~~~~~~~~~~--~~~--~-~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~  253 (325)
                      ..+.......  ...  . ..+..+...+.|.|...... |.|.|+|.+.|....
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            8876432110  000  0 01223334567888776654 678999999997644

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.76  E-value=1.9e-19  Score=139.70  Aligned_cols=117  Identities=9%  Similarity=-0.032  Sum_probs=91.1

Q ss_pred             CCCCCcccCCCCCCCcccccccccccc-----cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCC
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT  107 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~  107 (325)
                      .+|.|.+++++|+|.|+|.+.+..+..     +.+..||.+...+....+.+|+++.|.|.+.|.|.|.++|++++..+.
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~  148 (203)
T 4fa8_A           69 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP  148 (203)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-----
T ss_pred             EEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeec
Confidence            468899999999999999998765532     344577888888888889999999999999999999999998765442


Q ss_pred             ----CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095         108 ----PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus       108 ----~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                          ...++.+..++....+.+.+++.+|+|.|+|.+.|..|....
T Consensus       149 ~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          149 APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             -------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence                234555555555566777899999999999999999997654

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.76  E-value=1.8e-17  Score=131.50  Aligned_cols=188  Identities=14%  Similarity=0.249  Sum_probs=121.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEe--cCCCeeEEeeCC--e---eC---C-----------CCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTG--QPAPWTSWSKDG--K---PA---T-----------PNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~--~---~~---~-----------~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..|....+.+|++|+|.|.+.+  .+...+.|||..  .   .+   .           ...++.+..+  ....+|.|.
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (230)
T 3n9g_H            5 VQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELS   84 (230)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            3445677999999999999975  234678999732  1   01   0           1235555433  346679999


Q ss_pred             cCCCCCCeEEEEEEEeCC-------e-eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCee
Q psy1095         127 EVTLEDAGLYTIKVENNY-------G-SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI  198 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~-------~-~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~  198 (325)
                      +++.+|+|.|.|.+.+..       . .......|.|...+  ..+|.+........+..|+.+.|.|.+.+.++..+.+
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v  162 (230)
T 3n9g_H           85 SLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (230)
T ss_dssp             SCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC--CBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             CCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC--CCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEE
Confidence            999999999999998653       1 11233456665322  2346655444444456899999999999865534789


Q ss_pred             EEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       199 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      .|  ++..+.............+..+...+.|.|.....+| |.|+|.|.+..+.......+.+
T Consensus       163 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v  223 (230)
T 3n9g_H          163 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  223 (230)
T ss_dssp             EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence            99  4444322111000111223344455789999999999 9999999998877665555544

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.76  E-value=2.7e-17  Score=126.55  Aligned_cols=151  Identities=20%  Similarity=0.205  Sum_probs=100.3

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +.+...+....+.+|+.+.|.|.+.+.++. +.+.|++ ++..+..............    ....|.|.+++.+|+|.|
T Consensus         3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~-~~v~W~~~~g~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y   77 (191)
T 1epf_A            3 LQVDIVPSQGEISVGESKFFLCQVAGDAKD-KDISWFSPNGEKLSPNQQRISVVWNDD----DSSTLTIYNANIDDAGIY   77 (191)
T ss_dssp             CCEEEESSSEEEETTCCEEEEEEECCCSCC-CEEEEECTTSCEECCBSSSEEEEEEET----TEEEEEECSCCGGGCEEE
T ss_pred             eEEEecCCCcEEcCCCCEEEEEECCCCCCC-ceEEEEeCCCccccCCCCeEEEEECCC----CceEEEEccCCcccCEEE
Confidence            455566677889999999999999887632 8999999 7777763322111111111    346899999999999999


Q ss_pred             EEEEEeCC-CcEEeEEEEEEEeeCCe-------ecCCCCce------------E-EEEeC---------------CEEEE
Q psy1095         244 TCRVANEL-GEVVTSACLIVDVVKGK-------DLTSDGRL------------N-IITVG---------------GTSVL  287 (325)
Q Consensus       244 ~C~~~~~~-~~~~~~~~l~v~~~~~~-------~~~~~~~~------------~-~~~~~---------------~~~~l  287 (325)
                      +|.+.+.. +.....+.|.|...+..       .+..+...            . .+..+               ....|
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L  157 (191)
T 1epf_A           78 KCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL  157 (191)
T ss_dssp             EEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCE
T ss_pred             EEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeE
Confidence            99999988 44555555655322111       11101000            0 11111               11269


Q ss_pred             EEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEe
Q psy1095         288 TIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       288 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  320 (325)
                      .|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus       158 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             EETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             EECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence            999999999999999999999766666666553

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.76  E-value=2.4e-17  Score=125.85  Aligned_cols=147  Identities=20%  Similarity=0.320  Sum_probs=100.1

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.........  ..+  ......|.|.+++.+|+|.|+
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~--~~v~W~k~~~~~~~~~~~~~~--~~~--~~~~~~L~i~~~~~~d~G~Y~   76 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEE--PDIQWVKDGAVVQNLDQLYIP--VSE--QHWIGFLSLKSVERSDAGRYW   76 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEESCSS--CCEEEEETTEECCSSEEEEEE--EET--TEEEEEEEESSCCGGGCEEEE
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeCCCC--CeEEEEECCeecCCCCceEEE--ecC--CCceEEEEEeecCcccCeEEE
Confidence            44555556778899999999999998777  789999999888655332222  111  113478999999999999999


Q ss_pred             EEEEeCCCc-EEeEEEEEEEeeCCee-------cC--------------CCC-ceEEEEeC---------CEEEEEEcCC
Q psy1095         245 CRVANELGE-VVTSACLIVDVVKGKD-------LT--------------SDG-RLNIITVG---------GTSVLTIEDI  292 (325)
Q Consensus       245 C~~~~~~~~-~~~~~~l~v~~~~~~~-------~~--------------~~~-~~~~~~~~---------~~~~l~i~~v  292 (325)
                      |.+.+..+. ....+.|.|...+...       +.              +.. .+. +..+         ....|.|.++
T Consensus        77 C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~-W~~~~~~~~~~~~~~~~L~i~~~  155 (182)
T 1rhf_A           77 CQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV-WWRGTTKIGGPAPSPSVLNVTGV  155 (182)
T ss_dssp             EEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEE-EEETTEECSCSEESSEEEEECCC
T ss_pred             EEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEE-EEcCCeECCCCCCCceEEEEecc
Confidence            999998664 3345666664322111       11              111 111 1122         3357999988


Q ss_pred             CCCCCeEEEEEEECCCeeEEe-EEEEEEe
Q psy1095         293 TGDDSGKYQVHVSNQHGSDSC-YASVAVE  320 (325)
Q Consensus       293 ~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~  320 (325)
                        +|+|.|+|.|.|..|.... .+.|.|+
T Consensus       156 --~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          156 --TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             --SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             --ccCeEEEEEEECCCCCcccceEEEEeC
Confidence              5899999999999998864 7888875

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.76  E-value=4e-18  Score=132.22  Aligned_cols=142  Identities=19%  Similarity=0.233  Sum_probs=108.0

Q ss_pred             eeeecccCCCCcccC----CCCCCCCCCCCCcccCCCCCCCcccccccccccccc---------------cCCCCeeEec
Q psy1095          11 LSVKLTRPSGLMSGH----STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRR---------------LTSSPRFYAV   71 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~---------------~~~~p~~~~~   71 (325)
                      ..+.|.+++..+...    ........+|.|.+++.+|+|.|+|.+.+.......               ...+|.+...
T Consensus        40 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  119 (201)
T 3s97_C           40 LSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ  119 (201)
T ss_dssp             CEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEE
T ss_pred             eEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEec
Confidence            567788777665321    122334567999999999999999999875432211               1135667666


Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+  ...  ....|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus       120 ~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~--~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  195 (201)
T 3s97_C          120 FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE--IST--SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQA  195 (201)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCE--EET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCcee--ecC--CCCEEEEccCChhhCEEEEEEEEecCCceeeeE
Confidence            6677899999999999999999999999999997765422  222  224799999999999999999999999888888


Q ss_pred             EEEEE
Q psy1095         152 RLEIM  156 (325)
Q Consensus       152 ~l~v~  156 (325)
                      .|.|.
T Consensus       196 ~l~V~  200 (201)
T 3s97_C          196 RIYVQ  200 (201)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88775

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.75  E-value=1.9e-17  Score=128.86  Aligned_cols=141  Identities=21%  Similarity=0.265  Sum_probs=97.8

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      .|.+...+....+.+|+.+.|.|.+.+.+.+ ..+.|++++..+....                ..|.|.+++.+|+|.|
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~-~~v~W~k~g~~l~~~~----------------~~L~i~~v~~~D~G~Y   69 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPED-QSTQWFHNESLISSQA----------------SSYFIDAATVDDSGEY   69 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSC-CCEEEEETTEEESCCS----------------SEEEESSCCGGGCEEE
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCC-cEEEEEECCEEcccCc----------------cEEEEecccccCCEEE
Confidence            4666666666789999999999999987762 3599999998876432                3799999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEeeC------CeecCCCCc-------------e-EEEEeCC--------EEEEEEcCCCCC
Q psy1095         244 TCRVANELGEVVTSACLIVDVVK------GKDLTSDGR-------------L-NIITVGG--------TSVLTIEDITGD  295 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~~~------~~~~~~~~~-------------~-~~~~~~~--------~~~l~i~~v~~~  295 (325)
                      +|.+.|..  ....+.|.|...+      ...+..+..             . ..+..++        ...|.|.++..+
T Consensus        70 ~C~a~n~~--~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~  147 (204)
T 3sgj_C           70 RCQTQLST--LSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLK  147 (204)
T ss_dssp             EEEETTSB--CCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGG
T ss_pred             EEEeCCCc--ccccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcc
Confidence            99998743  3334455553221      101100000             1 1111121        236999999999


Q ss_pred             CCeEEEEEEEC-CCeeEEeEEEEEEeccc
Q psy1095         296 DSGKYQVHVSN-QHGSDSCYASVAVEGRK  323 (325)
Q Consensus       296 d~G~Y~C~a~n-~~g~~~~~~~l~V~~~p  323 (325)
                      |+|.|+|.|.| ..+..+..+.|.|.++|
T Consensus       148 D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          148 DSGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            99999999999 55566677899998755

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.75  E-value=2.4e-17  Score=128.97  Aligned_cols=148  Identities=20%  Similarity=0.237  Sum_probs=99.0

Q ss_pred             eeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEec----------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK----------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       166 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      .+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.          .....+..  .      ....|.|.++
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~--~------~~~~L~i~~v   72 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSS--PRVEWKFVQGSTTALVCYNSQITAPYADRVT--F------SSSGITFSSV   72 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSS--EEEEEEEEETTEEEEEEETTEECGGGTTTEE--E------ETTEEEESCC
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCC--cEEEEEECCCceeeEEecCCcccccccCcEE--e------eceeEEEccc
Confidence            3444556678899999999999998776  8999999765421          11111111  1      1158999999


Q ss_pred             CCCCCeEEEEEEEeCCC--cEEeEEEEEEEeeCCeec-------C-----------CC----CceEE-------------
Q psy1095         236 YPEDEGEFTCRVANELG--EVVTSACLIVDVVKGKDL-------T-----------SD----GRLNI-------------  278 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~-------~-----------~~----~~~~~-------------  278 (325)
                      +.+|+|.|+|.+.+..+  .....+.|.|...+....       .           ..    ..+..             
T Consensus        73 ~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~  152 (212)
T 1f97_A           73 TRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK  152 (212)
T ss_dssp             CGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC----
T ss_pred             CcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccc
Confidence            99999999999999876  445555666543321100       0           00    00000             


Q ss_pred             ----------EEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeE--EeEEEEEEeccc
Q psy1095         279 ----------ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSD--SCYASVAVEGRK  323 (325)
Q Consensus       279 ----------~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p  323 (325)
                                ........|.|.++..+|+|.|+|.|.|..|..  +..+.|.|++..
T Consensus       153 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~  209 (212)
T 1f97_A          153 KTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN  209 (212)
T ss_dssp             -CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEESSC
T ss_pred             ccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEEee
Confidence                      011223469999999999999999999999988  556777777643

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.74  E-value=2.6e-17  Score=148.57  Aligned_cols=169  Identities=13%  Similarity=0.281  Sum_probs=121.0

Q ss_pred             ceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCCC------------CCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          74 NKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATP------------NARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      ...+.+|++++|.|.+ .+.|.+.++|++++..+..            ..+..+...   .+|.|.+++.+|+|.|+|.+
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~i~~v~~~D~G~Y~C~~  451 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN---GSLFLPAVGIQDEGIFRCQA  451 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT---SCEEESSCCGGGCEEEEEEE
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC---ceEEEeccccccCeEEEEEE
Confidence            4568899999999998 7788899999998753211            112232222   26999999999999999999


Q ss_pred             EeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcE-EEEEEEEec-CCCCCeeEEeeCCEEeccCCCCceEE
Q psy1095         141 ENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV-TFECQVQVV-PPNDHDISWFRNNRLIKLDSDMKPEV  217 (325)
Q Consensus       141 ~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v-~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~  217 (325)
                      .+..+.. ...+.|.|...+.   .|.+....  ..+..|... .|.|.+.+. |.  +.+.|++++..+..........
T Consensus       452 ~n~~~~~~~~~~~l~V~~~~~---~p~i~~~~--~~~~~~~~~~~l~C~~~~~~P~--~~i~W~~~g~~l~~~~~~~~~~  524 (581)
T 3o3u_N          452 MNRNGKETKSNYRVRVYQIPG---KPEIVDSA--SELTAGVPNKVGTCVSEGSYPA--GTLSWHLDGKPLVPNEKGVSVK  524 (581)
T ss_dssp             ECTTSCEEEEEEEEEEEBCCC---CCEEESCC--SEECTTSCEEEEEEEEEEEBSC--CEEEEEETTEECCTTSTTEEEE
T ss_pred             EcCCCceeEEEEEEEEEcCCC---CCEEEcCC--cccccCCceeEEEEECCCCCCC--CeEEEEECCEECCCCCCeEEEE
Confidence            9988766 6778888877532   34443322  235555554 569999984 76  8999999999987543322111


Q ss_pred             ---Ee--cCCcceeEEEEEeCCCC-CCCCeEEEEEEEeCCC
Q psy1095         218 ---QV--DSKENLVIARLKIPHVY-PEDEGEFTCRVANELG  252 (325)
Q Consensus       218 ---~~--~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~  252 (325)
                         ..  +...+...+.|.|.+++ .++.|.|+|.|.|...
T Consensus       525 ~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~  565 (581)
T 3o3u_N          525 EQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLP  565 (581)
T ss_dssp             EEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred             eeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence               11  33456677899999998 4558899999999864

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.74  E-value=5.7e-17  Score=128.27  Aligned_cols=182  Identities=15%  Similarity=0.268  Sum_probs=114.7

Q ss_pred             cCCceEecCCCeEEEEEEEEec--CCCeeEEeeCC--ee---C--------------CCCCcEEEEec--CCeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDG--KP---A--------------TPNARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~--~~---~--------------~~~~~~~~~~~--~~~~~l~i~~  127 (325)
                      .|....+.+|++|+|.|.+.+.  +...+.||+..  ..   +              ....++.+..+  ....+|.|.+
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (226)
T 3mlr_H            6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTT   85 (226)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESS
T ss_pred             cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECC
Confidence            3446789999999999999753  34679999842  11   0              01135554432  2457799999


Q ss_pred             CCCCCCeEEEEEEEeCCe---------eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCee
Q psy1095         128 VTLEDAGLYTIKVENNYG---------SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI  198 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~~---------~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~  198 (325)
                      ++.+|+|.|.|.+.+..+         .......|.|...+  ..+|.+........+..|+.+.|.|.+.+.++..+.+
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~--~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v  163 (226)
T 3mlr_H           86 LQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  163 (226)
T ss_dssp             CCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC--CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEE
T ss_pred             CCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC--CCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEE
Confidence            999999999999976421         11122355664322  2345555333333445799999999999866534789


Q ss_pred             EEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       199 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      .|  ++..+.............+..+...+.|.|.....+| |.|+|.+.|..+.....
T Consensus       164 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  219 (226)
T 3mlr_H          164 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  219 (226)
T ss_dssp             EE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred             EE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeE
Confidence            99  3332221110000111222344455789999998889 99999999987765443

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.74  E-value=6.6e-17  Score=130.46  Aligned_cols=187  Identities=15%  Similarity=0.288  Sum_probs=116.8

Q ss_pred             cCCceEecCCCeEEEEEEEEec--CCCeeEEeeCC--ee---C--------------CCCCcEEEEec--CCeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDG--KP---A--------------TPNARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~--~~---~--------------~~~~~~~~~~~--~~~~~l~i~~  127 (325)
                      .|....+.+|++|+|.|.+.+.  ....+.||+..  ..   +              ....++.+..+  .+..+|.|.+
T Consensus        29 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  108 (256)
T 3sob_H           29 ESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNS  108 (256)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             ecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECC
Confidence            3445678999999999999753  24678999732  11   0              01235555432  3456799999


Q ss_pred             CCCCCCeEEEEEEEeCC-----------eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCC
Q psy1095         128 VTLEDAGLYTIKVENNY-----------GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH  196 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~-----------~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~  196 (325)
                      ++.+|+|.|.|.+.+..           ........|.|...+  ..+|.+........+.+|+.++|.|.+.+..+..+
T Consensus       109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~  186 (256)
T 3sob_H          109 LRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  186 (256)
T ss_dssp             CCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC--CBCCEEEEECCC-----TTEEEEEEEEEEEBSSCC
T ss_pred             CCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC--CCCCEEEEECCCcccccCCcEEEEEEEEEEECCCe
Confidence            99999999999998642           112233456665322  24466654444445678999999999988655337


Q ss_pred             eeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       197 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      .+.|  ++..+.............+..+...+.|.|.....+| |.|+|.+.+..+.......+.+
T Consensus       187 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          187 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             EEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            8999  4443322111000111223344455789999999999 9999999998876665555443

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.74  E-value=9.5e-18  Score=129.79  Aligned_cols=148  Identities=17%  Similarity=0.208  Sum_probs=97.2

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+.. .+.+|+.++|.|.+.+ +.  +.+.|+|++..+........   ..    .....|.|.+++.+|+|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~--~~~~w~k~g~~~~~~~~~~~---~~----~~~~~L~i~~v~~~D~G~   72 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EA--REYRLDKEESPAPWDRQNPL---EP----KNKARFSIPSMTEDYAGR   72 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TC--CEEEEEETTSCSCSEEECCC---SS----SSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CC--CEEEEEECCCCCcccccccc---cC----CceEEEEeccCCcccCce
Confidence            35677766665 7899999999999887 44  78999999876643111000   00    134689999999999999


Q ss_pred             EEEEEEeCCCc--EEeEEEEEEEeeC---------CeecCCCCceEE------------E-----------------EeC
Q psy1095         243 FTCRVANELGE--VVTSACLIVDVVK---------GKDLTSDGRLNI------------I-----------------TVG  282 (325)
Q Consensus       243 Y~C~~~~~~~~--~~~~~~l~v~~~~---------~~~~~~~~~~~~------------~-----------------~~~  282 (325)
                      |+|.+.|..+.  ....+.|.|....         ...+..+..+.+            +                 ...
T Consensus        73 Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~  152 (196)
T 3p2t_A           73 YRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQ  152 (196)
T ss_dssp             EEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEEEEEEEEEETTCCCGGGSEEEEEEEEE
T ss_pred             EEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCCCCEEEEEeCCCcccceeecccccccC
Confidence            99999998772  2334455553211         111111111110            1                 111


Q ss_pred             CEEEEEEcCCCCCCCeEEEEEEECCCe-----eEEeEEEEEEec
Q psy1095         283 GTSVLTIEDITGDDSGKYQVHVSNQHG-----SDSCYASVAVEG  321 (325)
Q Consensus       283 ~~~~l~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~  321 (325)
                      ....|.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|.+
T Consensus       153 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~G  196 (196)
T 3p2t_A          153 HQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSG  196 (196)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC-
T ss_pred             cceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeCC
Confidence            235799999999999999999999986     334457777754

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.74  E-value=9.4e-17  Score=112.66  Aligned_cols=98  Identities=27%  Similarity=0.403  Sum_probs=88.2

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..||.|...|....+.+|+++.|.|.+.+.|.+.+.|+|++..+....++.+........|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            35888888888999999999999999999999999999999999887788877766678899999999999999999999


Q ss_pred             CCeeEEEEEEEEEECCCc
Q psy1095         143 NYGSVEATARLEIMDPRA  160 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~~  160 (325)
                      ..|.....+.|.|...+.
T Consensus        85 ~~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           85 KLGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             SSCEEECCEEEEEECSCS
T ss_pred             CCCcEEEEEEEEEECCCC
Confidence            999888889999987654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=2.4e-17  Score=126.15  Aligned_cols=142  Identities=18%  Similarity=0.222  Sum_probs=108.6

Q ss_pred             eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCccccccccccc--ccccCCCCeeEecCCceEecCCCeEEEEEEE
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIR--TRRLTSSPRFYAVPHNKICDLGDTVRFQCSV   89 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~--~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~   89 (325)
                      .+.|.+++..+....... ....+.|.  +.+|+|.|+|.+.+....  ...+..+|.+...+....+.+|+.+.|.|.+
T Consensus        31 ~~~W~k~~~~l~~~~~~~-~~~~l~i~--~~~d~G~Y~C~~~n~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~  107 (184)
T 3b5h_A           31 GHRWLKGGVVLKEDALPG-QKTEFKVD--SDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKS  107 (184)
T ss_dssp             EEEEESSSEEEECTTCCC-SEEEEEEC--GGGCCEEEEEEEESTTSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEEC
T ss_pred             EEEEEeCCEEeecccccC-CcEEEEEe--chhhCeEEEEEEECCcCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEE
Confidence            677888776665443221 12244455  689999999999863332  3455588988888888889999999999999


Q ss_pred             EecC-CCeeEEee---CC-eeCCCC--CcEEEEecCCeEEEEEccCC-CCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095          90 TGQP-APWTSWSK---DG-KPATPN--ARVTIREKEDLRFLEISEVT-LEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus        90 ~~~p-~~~v~W~~---~~-~~~~~~--~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      .+.| .+.+.|++   ++ ..+...  .++.+...+....|.|.+++ .+|+|.|+|.+.|..|.....+.|.|.
T Consensus       108 ~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          108 ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            9998 79999999   44 444322  56777666667789999999 999999999999999988888888775

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.73  E-value=6.8e-17  Score=126.86  Aligned_cols=154  Identities=18%  Similarity=0.319  Sum_probs=111.5

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+ ..+....+..|+.+.|.|.+.+.|.  +.+.|++++..+.............+    ....|.|.+++.+|+|.|
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~--p~i~W~~~g~~l~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y   91 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYPS--ATISWFRDGQLLPSSNYSNIKIYNTP----SASYLEVTPDSENDFGNY   91 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEESC--CEEEEEETTEESSCSSSCSEEEEEET----TEEEEEECCCSGGGCEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecCC--CEEEEEECCeECCCCCCccEEEecCC----CeeEEEEecCChhhCeEE
Confidence            3455 3444567889999999999999998  89999999998876543333322222    247899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEeeCCeecC-------------------CCC-ce---EEEEe-CC----------------
Q psy1095         244 TCRVANELGEVVTSACLIVDVVKGKDLT-------------------SDG-RL---NIITV-GG----------------  283 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~-------------------~~~-~~---~~~~~-~~----------------  283 (325)
                      +|.|.|..|.....+.|.+...+..+..                   .++ ..   .+... .+                
T Consensus        92 ~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~  171 (215)
T 3mtr_A           92 NCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM  171 (215)
T ss_dssp             EEEEECSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHH
T ss_pred             EEEEEECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccc
Confidence            9999999998888777777433322100                   011 11   11111 11                


Q ss_pred             EEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095         284 TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI  324 (325)
Q Consensus       284 ~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  324 (325)
                      ...|.|.++...+.|.|+|.|.|..|....+..+.|+-+|.
T Consensus       172 ~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p~  212 (215)
T 3mtr_A          172 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV  212 (215)
T ss_dssp             HTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC-
T ss_pred             cccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEeccc
Confidence            04699999999999999999999999998888888876663

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.73  E-value=7.5e-19  Score=143.02  Aligned_cols=247  Identities=11%  Similarity=0.080  Sum_probs=87.6

Q ss_pred             CCchhcccceeeecccCCCCccc-----CCCCC-CCC---CCCCCcccCCCCCCCcccccccccc-c----ccccCCCC-
Q psy1095           2 AIPEEKENSLSVKLTRPSGLMSG-----HSTPR-STP---RSTPPRSISPLSSRTFTPYSLNSAI-R----TRRLTSSP-   66 (325)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~---~~l~i~~v~~~d~G~Y~c~~~~~~~-~----~~~~~~~p-   66 (325)
                      .++.|+.-.|+++-..+.....+     ..... ...   ..+.|++++.  .|.|.|++..... .    ...+..+| 
T Consensus        10 ~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~--~~~y~C~~~~~~~~~~~~v~l~V~~~P~   87 (291)
T 1mq8_A           10 ILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE--DSQPMCYSNCPDGQSTAKTFLTVYWTPE   87 (291)
T ss_dssp             EECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCS--CCCCEEEEECSSCEEEEECEEEECBCCS
T ss_pred             EEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCCCceEEEEEEeccc--CCeEEEEEEcCCccEEEEEEEEEecCCC
Confidence            35677777887777655443111     11111 111   1256778774  3579999854421 1    12233334 


Q ss_pred             eeEecCCceEecCCCeEEEEEEEEe-cCCC--eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTG-QPAP--WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+.+.+.+..+.+|+.++|.|.+.+ .|..  .|+|||+++.+....   ........+|.+.....+|.+.|+|++.+.
T Consensus        88 ~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~---~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~  164 (291)
T 1mq8_A           88 RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGANFSCRTELD  164 (291)
T ss_dssp             CCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEE---CCBTTEEEEEECCCSSSCSSCEEEEEEEEE
T ss_pred             CCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeeccc---CCCCCceEEEEeeeeeccCCceEEEEEEec
Confidence            3334444445889999999999977 4544  589999997764321   011122345777666777777999999975


Q ss_pred             Cee--------EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCCc
Q psy1095         144 YGS--------VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMK  214 (325)
Q Consensus       144 ~~~--------~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~  214 (325)
                      .+.        ..+...|.|.+.|..  .+.+..   ...+.+|+.++|.|.+.|.+++ .+.+.|+++|..+.....  
T Consensus       165 l~~~g~~l~~~~s~~~~L~V~~~P~~--~~~~~~---p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~--  237 (291)
T 1mq8_A          165 LRPQGLELFENTSAPYQLQTFVLPAT--PPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT--  237 (291)
T ss_dssp             CGGGTSCEEEECCCCEECBC------------------------------------------------------------
T ss_pred             CCccCCccccccccceEEEEEecCCC--CceecC---CcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceee--
Confidence            431        234456777665321  112111   2257789999999999998663 347999999988764211  


Q ss_pred             eEEEecCCcceeEEEEEeCCC---CCC--CCeEEEEEEEeCCCcEEeEEEEEEEeeCCeec
Q psy1095         215 PEVQVDSKENLVIARLKIPHV---YPE--DEGEFTCRVANELGEVVTSACLIVDVVKGKDL  270 (325)
Q Consensus       215 ~~~~~~~~~~~~~~~l~i~~~---~~~--d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~  270 (325)
                          .++      ..+.+...   +.+  +.+.|+|.+.+..........|.|+..+++.+
T Consensus       238 ----~~g------~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~~~~  288 (291)
T 1mq8_A          238 ----YGN------DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV  288 (291)
T ss_dssp             -------------------------------------------------------------
T ss_pred             ----ecC------CeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCCccE
Confidence                111      12222222   343  46677888887555566666777765555443

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.73  E-value=7.6e-17  Score=137.37  Aligned_cols=181  Identities=15%  Similarity=0.166  Sum_probs=117.3

Q ss_pred             EecCCceE-ecCCCeEEEEEEEEec-CC---CeeEEeeCCeeCCCCCcE--EEEecC---CeEEEEEccCCCCCCeEEEE
Q psy1095          69 YAVPHNKI-CDLGDTVRFQCSVTGQ-PA---PWTSWSKDGKPATPNARV--TIREKE---DLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        69 ~~~~~~~~-v~~g~~v~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~--~~~~~~---~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      +..|.... +.+|++++|.|.+.+. |.   ..|+|++++..+......  .....+   ....|.|..++.+|.|.|+|
T Consensus       171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C  250 (376)
T 2aty_A          171 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKC  250 (376)
T ss_pred             EeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEE
Confidence            34444344 7889999999999886 32   369999998665321100  000011   12469999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEE
Q psy1095         139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ  218 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  218 (325)
                      .+.+..+.......+.+  ......+|.+...+.......|+.++|.|.+.+++++.+.|.|++++..+......... .
T Consensus       251 ~~~~~~~~~~~~~~v~~--~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~-~  327 (376)
T 2aty_A          251 RVNSAAFPAPIEKTISK--TKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPI-M  327 (376)
T ss_pred             EEecCCCCCceEEEEcC--CCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCce-E
Confidence            99887653222222211  11112356666655554455689999999999976544799999999887433222211 1


Q ss_pred             ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       219 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ..+..+...+.|.|.....+|.|.|+|.|.|...
T Consensus       328 ~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          328 NTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             CCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            2222344567788888888889999999998754

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.73  E-value=1.2e-17  Score=130.96  Aligned_cols=128  Identities=13%  Similarity=0.061  Sum_probs=90.7

Q ss_pred             CCCCCCcccCCCCCCCcccccccccccc------cccC--CCCeeEecCCc-eEecCCCeEEEEEEEEecC--CCeeEEe
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRT------RRLT--SSPRFYAVPHN-KICDLGDTVRFQCSVTGQP--APWTSWS  100 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~--~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~p--~~~v~W~  100 (325)
                      ...|.|.+++.+|+|.|+|.+.+.....      +.+.  .+|.+...+.. ..+.+|++++|.|.+.+.|  .+.+.|+
T Consensus        63 ~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~  142 (213)
T 2x1w_L           63 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE  142 (213)
T ss_dssp             TTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEE
T ss_pred             CccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEE
Confidence            3568899999999999999997643221      1121  24555555544 4799999999999999855  3579999


Q ss_pred             eCCeeCCCCCc-EEEEe-------cCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCC
Q psy1095         101 KDGKPATPNAR-VTIRE-------KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       101 ~~~~~~~~~~~-~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      +++..+..... .....       .....+|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+
T Consensus       143 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          143 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             CSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             ecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            98876543211 10110       1113469999999999999999999999998899999998763

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.73  E-value=1.3e-17  Score=134.42  Aligned_cols=112  Identities=14%  Similarity=0.128  Sum_probs=57.5

Q ss_pred             CCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC---CCeeEEeeCC
Q psy1095         128 VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN---DHDISWFRNN  204 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~---~~~~~W~~~~  204 (325)
                      ++..|+|.|+|.+.   |.......+.+..      ++.+...+....+.+|+.++|.|.+.+.++.   .+.+.|++++
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~------~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   81 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLR------ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQR   81 (254)
T ss_dssp             ------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEEC
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheee------ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeC
Confidence            68899999999997   3222233333322      3555665667789999999999999887731   2789999843


Q ss_pred             --EEec----------cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         205 --RLIK----------LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       205 --~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                        ..+.          .....+......+    ....|.|.+++.+|+|.|+|.+.|..+
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~~  137 (254)
T 2c1o_A           82 PGQSPKRLIYLVSKLDSGDPDRFTGSGSG----TDFTLKISRVEAEDLGIYYCVQGSHFP  137 (254)
T ss_dssp             TTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCCGGGCSEEEEEECSSSS
T ss_pred             CCCCceEEEEeccccCCCccceEEEecCC----CEEEEEECcCCcccCEEEEEEEEcCcc
Confidence              2110          1101111111111    345899999999999999999998754

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.73  E-value=7.1e-17  Score=122.49  Aligned_cols=141  Identities=21%  Similarity=0.233  Sum_probs=98.5

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.+.+ ..+.|++++..+....                ..|.|.+++.+|+|.
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~-~~~~W~~~~~~~~~~~----------------~~L~i~~~~~~d~G~   68 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPED-NSTQWFHNESLISSQA----------------SSYFIDAATVNDSGE   68 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTB-CCCEEEETTEEEESSC----------------SEEEESSCCGGGCEE
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCC-cceEEEECCEEccCCc----------------eEEEEeCCCcccCEE
Confidence            45777777777789999999999999888762 3489999998875321                379999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeC------CeecC-----------C-CCc--eEEEEeCC--------EEEEEEcCCCC
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVK------GKDLT-----------S-DGR--LNIITVGG--------TSVLTIEDITG  294 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~------~~~~~-----------~-~~~--~~~~~~~~--------~~~l~i~~v~~  294 (325)
                      |+|.+.|..+.  ..+.|.|....      ...+.           . ...  ...+..++        ...|.|.++..
T Consensus        69 Y~C~~~n~~~s--~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~  146 (175)
T 1fnl_A           69 YRCQTNLSTLS--DPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATL  146 (175)
T ss_dssp             EEEECSSSCCC--CCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCG
T ss_pred             EEEEeeCCccc--ccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccCh
Confidence            99999885543  34444443111      00000           0 000  11112222        23699999999


Q ss_pred             CCCeEEEEEEECCCee-EEeEEEEEEecc
Q psy1095         295 DDSGKYQVHVSNQHGS-DSCYASVAVEGR  322 (325)
Q Consensus       295 ~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~  322 (325)
                      +|+|.|+|.|.|..|. .+..+.|.|.++
T Consensus       147 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          147 KDSGSYFCRGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             hhCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence            9999999999997664 556688888764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.73  E-value=1.4e-17  Score=126.60  Aligned_cols=142  Identities=22%  Similarity=0.227  Sum_probs=98.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.+.+ ..+.|++++..+....                ..|.|.+++.+|+|.|
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~-~~i~W~~~~~~~~~~~----------------~~L~i~~v~~~d~G~Y   66 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEV-SSTKWFHNGSLSEETN----------------SSLNIVNAKFEDSGEY   66 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC-----CCEEEETTEECSCCS----------------SEEEECSCCGGGCEEE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCc-ceEEEEECCeECCCCc----------------eEEEEeccceecCEEE
Confidence            4677777777789999999999999877652 3699999998876321                3799999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEee------CCeecCCCCce-------------E-EEEeC--------CEEEEEEcCCCCC
Q psy1095         244 TCRVANELGEVVTSACLIVDVV------KGKDLTSDGRL-------------N-IITVG--------GTSVLTIEDITGD  295 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~~------~~~~~~~~~~~-------------~-~~~~~--------~~~~l~i~~v~~~  295 (325)
                      +|.+.|..+..  .+.|.|...      +...+..+..+             . .+..+        ....|.|.++..+
T Consensus        67 ~C~~~~~~~s~--~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~  144 (176)
T 1f2q_A           67 KCQHQQVNESE--PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVE  144 (176)
T ss_dssp             EEECTTSSCCC--CEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGG
T ss_pred             EEEcCCccccc--cEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcc
Confidence            99998865543  344444211      11111111100             1 11122        2357999999999


Q ss_pred             CCeEEEEEEECCCe-eEEeEEEEEEecccC
Q psy1095         296 DSGKYQVHVSNQHG-SDSCYASVAVEGRKI  324 (325)
Q Consensus       296 d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~  324 (325)
                      |+|.|+|.|.|..+ ..+..+.|.|.++|.
T Consensus       145 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          145 DSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             cCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            99999999999755 455568999999885

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.73  E-value=1.2e-16  Score=126.52  Aligned_cols=151  Identities=13%  Similarity=0.133  Sum_probs=89.5

Q ss_pred             cCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEe-----------ccC--CCCce-EEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLI-----------KLD--SDMKP-EVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~-----------~~~--~~~~~-~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      .++.+.+|++++|.|.+.+.+.+ ...+.|+|++...           ...  ..+.. ..............|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            34678899999999999865542 2479999875321           110  00000 000111112245789999999


Q ss_pred             CCCCeEEEEEEEeCCCcEEeEEEEEEEee------------------------------------CCeecCCCCceEEEE
Q psy1095         237 PEDEGEFTCRVANELGEVVTSACLIVDVV------------------------------------KGKDLTSDGRLNIIT  280 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~------------------------------------~~~~~~~~~~~~~~~  280 (325)
                      .+|+|.|+|.|.|..+.....+.+.+...                                    .+..+..........
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~  171 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVAD  171 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEEC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEEC
Confidence            99999999999998877665444433111                                    111111100001111


Q ss_pred             eCCE-EEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095         281 VGGT-SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR  322 (325)
Q Consensus       281 ~~~~-~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  322 (325)
                      .++. ..+.+..+..+|+|.|+|.|.|..|..+.++.|.|.++
T Consensus       172 ~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          172 GVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             TTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             CCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            1221 23455567889999999999999999999999998764

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.73  E-value=8.5e-17  Score=126.57  Aligned_cols=144  Identities=21%  Similarity=0.253  Sum_probs=104.1

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      .+.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.....               ..|.|.+++.+|+|.|
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~--~~v~W~~~~~~~~~~~~---------------~~L~i~~v~~~d~G~Y   80 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHPF--VQYQWFKMNKEIPNGNT---------------SELIFNAVHVKDAGFY   80 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTTS--SEEEEEETTEECTTCCS---------------SEEEETTCCGGGCEEE
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCCC--CEEEEEECCEECCCCCC---------------CEEEEccCChhhCeEe
Confidence            467777777888999999999999988777  89999999988765421               3799999999999999


Q ss_pred             EEEEEeCCCcE-EeEEEEEEEeeCC----------------------eecCCCCce-------------EEEEeC-----
Q psy1095         244 TCRVANELGEV-VTSACLIVDVVKG----------------------KDLTSDGRL-------------NIITVG-----  282 (325)
Q Consensus       244 ~C~~~~~~~~~-~~~~~l~v~~~~~----------------------~~~~~~~~~-------------~~~~~~-----  282 (325)
                      +|.+.+..+.. ...+.|.|...+.                      ..+..+...             ..+..+     
T Consensus        81 ~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~  160 (218)
T 3k0w_A           81 VCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT  160 (218)
T ss_dssp             EEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECT
T ss_pred             EEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECC
Confidence            99999987754 4445666643310                      011111111             111222     


Q ss_pred             --CEEEEEEcCCCCCCCeEEEEEEECCCee-EEeEEEEEEecccC
Q psy1095         283 --GTSVLTIEDITGDDSGKYQVHVSNQHGS-DSCYASVAVEGRKI  324 (325)
Q Consensus       283 --~~~~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~  324 (325)
                        ....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|.+.+.
T Consensus       161 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~  205 (218)
T 3k0w_A          161 HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN  205 (218)
T ss_dssp             TCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC---
T ss_pred             CCCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCcc
Confidence              2247999999999999999999999987 55668898877543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.73  E-value=1.6e-17  Score=140.17  Aligned_cols=172  Identities=17%  Similarity=0.163  Sum_probs=120.0

Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCC
Q psy1095         132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDS  211 (325)
Q Consensus       132 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~  211 (325)
                      +.|.|+|...+....    +.+      ....+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+....
T Consensus       136 ~~~~~~C~~~~~l~~----l~~------~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~--p~i~W~~~~~~~~~~~  203 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAH----MPN------ASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGL--EQAGWILTELEQSATV  203 (347)
T ss_dssp             GGGCCCCSSSSCSSC----CCC------TTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSC--CCCCEEESCCCSSEEE
T ss_pred             cccCCCCCCChHHhc----CCc------ccCCCCceeccCCceEEeCCCcEEEEEEEecCCC--CEEEEEcCCceeeccc
Confidence            568899977551110    011      1234577777777788999999999999999887  8899999886543211


Q ss_pred             CCceEEEecCCcceeEEEEEeCCCCCCCCe-EEEEEEEeCCCcEEeEEEEEE----------------------------
Q psy1095         212 DMKPEVQVDSKENLVIARLKIPHVYPEDEG-EFTCRVANELGEVVTSACLIV----------------------------  262 (325)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~l~v----------------------------  262 (325)
                      ..        ........|.|.+++.+|+| .|+|.|.|..|.....+.|.|                            
T Consensus       204 ~~--------~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P~  275 (347)
T 2ifg_A          204 MK--------SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPA  275 (347)
T ss_dssp             CC--------CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEEEESC
T ss_pred             cc--------ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEeeecCC
Confidence            10        01123568999999999999 999999998765544333332                            


Q ss_pred             ----EeeCCeecCCCCceEEEEeC-------CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         263 ----DVVKGKDLTSDGRLNIITVG-------GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       263 ----~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                          |.+.+..+..+.........       ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus       276 p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             CEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             CcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence                23333333322222221111       24569999999999999999999999999999999998877

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.72  E-value=2e-16  Score=108.82  Aligned_cols=98  Identities=20%  Similarity=0.350  Sum_probs=88.2

Q ss_pred             ccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        61 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      .+..+|.|...+....+.+|+++.|.|.+.+.|.|.+.|++++..+....++.+........|.|.+++.+|+|.|+|.+
T Consensus         4 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   83 (103)
T 3qp3_A            4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVC   83 (103)
T ss_dssp             TTCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEE
Confidence            44568899999999999999999999999999999999999999998888888877777788999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEECC
Q psy1095         141 ENNYGSVEATARLEIMDP  158 (325)
Q Consensus       141 ~~~~~~~~~~~~l~v~~~  158 (325)
                      .|..|.....+.|.|...
T Consensus        84 ~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           84 TNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EeCCCcEEEEEEEEEECC
Confidence            999998888888888653

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.72  E-value=1.1e-16  Score=109.09  Aligned_cols=94  Identities=19%  Similarity=0.328  Sum_probs=78.5

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.|...+....+.+|+.+.|.|.+.|.|.  +.+.|++++..+......+......+    ..+.|.|.+++.+|+|.|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~--p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y   78 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPT--PEVTWSCGGRKIHSQEQGRFHIENTD----DLTTLIIMDVQKQDGGLY   78 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESC--CEEEEEETTEECCTTGGGTEEEEECS----SEEEEEESSCCGGGCEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecC--CEEEEEECceEeeeeccceeeeeccc----ceEEEEEcCCCccCCEEE
Confidence            466666667788999999999999999998  89999999999876654444433433    356899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|..|.....+.|.|.
T Consensus        79 ~C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           79 TLSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEEE
Confidence            99999999999888888874

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.72  E-value=9.9e-17  Score=110.75  Aligned_cols=93  Identities=23%  Similarity=0.390  Sum_probs=79.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.|...+.+..+.+|+.+.|.|.+.|.|.  +.+.|++++..+..+.++...  .++    ....|.|.+++.+|+|.|
T Consensus        13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~--p~v~W~k~g~~l~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~Y   84 (107)
T 3knb_B           13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPP--PVVVWEKGGQQLAASERLSFP--ADG----AEHGLLLTAALPTDAGVY   84 (107)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESC--CEEEEEETTEECCCCSSEECC--EET----TEEEEEESSCCGGGCEEE
T ss_pred             CCEEEeCCCcEEEeCCCcEEEEEEEEEecC--CEEEEEECcccccceeeEEEe--ecC----ceEEEEEecCChhhCEEE
Confidence            477777778889999999999999999998  899999999999776654433  333    346899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEe
Q psy1095         244 TCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      +|.|.|..|.....+.|.|..
T Consensus        85 ~C~a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           85 VCRARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEEc
Confidence            999999999999888888854

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.71  E-value=7.2e-17  Score=126.33  Aligned_cols=151  Identities=18%  Similarity=0.358  Sum_probs=102.0

Q ss_pred             cCeeEecCCcEEEEEEEEecCCC--CCeeEEeeC----------------CEEecc-CC--CCceEEEecCCcceeEEEE
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPN--DHDISWFRN----------------NRLIKL-DS--DMKPEVQVDSKENLVIARL  230 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~--~~~~~W~~~----------------~~~~~~-~~--~~~~~~~~~~~~~~~~~~l  230 (325)
                      ....+.+|+.+.|.|.+.+.+..  .+.+.|+++                +..+.. ..  ..+... ...........|
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~L   86 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF-TSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEE-SCSCGGGTBCCE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEE-eccCccCCcccE
Confidence            35678899999999999887642  269999983                322221 00  001110 000001123579


Q ss_pred             EeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeec-------CC-----------CC----ceEEEEe-C-----
Q psy1095         231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDL-------TS-----------DG----RLNIITV-G-----  282 (325)
Q Consensus       231 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~-------~~-----------~~----~~~~~~~-~-----  282 (325)
                      .|.+++.+|+|.|+|.+.+..+.....+.|.|...+....       ..           .+    .+..... +     
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~  166 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP  166 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccC
Confidence            9999999999999999999988888888888854432111       00           11    1111111 1     


Q ss_pred             -------CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095         283 -------GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK  323 (325)
Q Consensus       283 -------~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  323 (325)
                             ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus       167 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          167 TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             GGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             ccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence                   12489999999999999999999999999999999998665

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.71  E-value=1.8e-16  Score=128.97  Aligned_cols=161  Identities=16%  Similarity=0.159  Sum_probs=106.9

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCe-eEEeeC--CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPW-TSWSKD--GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      +.+.|....+.+|+++.|+|.+.. +.|. +.|...  ...+...       ......+.+.+++.+  |.|.|.+....
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~-------g~~~~~~~l~~v~~~--~~y~C~~~~~~   71 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLP-------GNNRKVYELSNVQED--SQPMCYSNCPD   71 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCS-------CSSEEEEEEESCCSC--CCCEEEEECSS
T ss_pred             eEEeCCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccC-------CCceEEEEEEecccC--CeEEEEEEcCC
Confidence            345677788999999999999864 4444 888631  1111011       111224778887753  46999997654


Q ss_pred             eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCC-CeeEEeeCCEEeccCCCCceEEEecCCc
Q psy1095         145 GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPND-HDISWFRNNRLIKLDSDMKPEVQVDSKE  223 (325)
Q Consensus       145 ~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~  223 (325)
                      ....+.+.|.|..+|..   +.+..  ....+.+|+.++|.|.+.+..+.. +.+.|+|++..+......     ..   
T Consensus        72 ~~~~~~v~l~V~~~P~~---v~I~~--~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~-----~~---  138 (291)
T 1mq8_A           72 GQSTAKTFLTVYWTPER---VELAP--LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-----GE---  138 (291)
T ss_dssp             CEEEEECEEEECBCCSC---CCBCC--CCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC-----BT---
T ss_pred             ccEEEEEEEEEecCCCC---CEEec--CCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC-----CC---
Confidence            56667778888876432   33322  234478899999999998866532 369999999877533210     01   


Q ss_pred             ceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         224 NLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       224 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                       .....|.+...+.+|.+.|+|.|.+..+
T Consensus       139 -~~~~~l~~~~~~~D~g~~~~C~A~~~l~  166 (291)
T 1mq8_A          139 -PAEVTTTVLVRRDHHGANFSCRTELDLR  166 (291)
T ss_dssp             -TEEEEEECCCSSSCSSCEEEEEEEEECG
T ss_pred             -CceEEEEeeeeeccCCceEEEEEEecCC
Confidence             1235688877777778899999998755

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.71  E-value=3.1e-15  Score=116.41  Aligned_cols=156  Identities=19%  Similarity=0.320  Sum_probs=112.0

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEe-cC---CCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTG-QP---APWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~-~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      +.+...|....+..|+.++|.|.+.+ .|   ...++|+|++.++...          ...|.+..+...|+|.|+|.+.
T Consensus         3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa----------T~tLti~s~t~sdSG~YqCvVT   72 (304)
T 3shs_A            3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN----------TATLTVADATSENAGSYKVTVQ   72 (304)
T ss_dssp             EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEEE
T ss_pred             cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC----------cceEEeeeccccCCeEEEEEEE
Confidence            46677788888999999999999865 56   3479999999886532          2258899999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCCcccCCCeee-ecCcCeeEecCCcEEEEEEE--Eec-CCC---CCeeEEeeCCEEeccCCCCc
Q psy1095         142 NNYGSVEATARLEIMDPRAIISRPKVL-NGLENLRCCDGDSVTFECQV--QVV-PPN---DHDISWFRNNRLIKLDSDMK  214 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~~~~~~p~~~-~~~~~~~v~~g~~v~l~C~~--~~~-~~~---~~~~~W~~~~~~~~~~~~~~  214 (325)
                      +..+.......+.|.....    +.+. ..+....+..|..+.|.+.+  .|. +++   ..++.|++++..+...    
T Consensus        73 Da~Gcs~tSs~VtVT~~a~----l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA----  144 (304)
T 3shs_A           73 DTDTMTSVESEVFLMEEAE----LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT----  144 (304)
T ss_dssp             ETTTCCEEECCCEEECBCC----EEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS----
T ss_pred             ECCCCeeeeeeEEEeccCc----eeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc----
Confidence            8777554443444443311    1222 22333345567889999887  432 321   2699999999877422    


Q ss_pred             eEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         215 PEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       215 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                                   ..|.+...+..++|.|.|.+.+..+
T Consensus       145 -------------q~lT~sS~TateaG~YtV~VTn~~~  169 (304)
T 3shs_A          145 -------------QDITIQEFTADKNGVYTVKVWGESE  169 (304)
T ss_dssp             -------------SEEEECSCCGGGCEEEEEEEESSSG
T ss_pred             -------------cccceeeEEecCCeEEEEEEEcCCC
Confidence                         1577888888999999999999866

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.70  E-value=5.3e-17  Score=125.75  Aligned_cols=148  Identities=17%  Similarity=0.273  Sum_probs=95.6

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+. ..+.+|+.++|.|.+.+.+.   .+.|+|++..+.......... .      ....|.|.+++.+|+|.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~---~~~W~k~g~~~~~~~~~~~~~-~------~~~~L~i~~v~~~D~G~   72 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ---EYRLYREKKTAPWITRIPQEL-V------KKGQFPIPSITWEHTGR   72 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC---CEEEEESSSCCHHHHTSCHHH-H------TTTEEEESSCCGGGCEE
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc---EEEEEECCccccccccccccC-C------cccEEEECCCCHHHCeE
Confidence            3567766655 47889999999999987654   699999988764211110000 1      11479999999999999


Q ss_pred             EEEEEEeCC-C--cEEeEEEEEEEeeCC-ee--------cCCCCce-----------E-EEE------------------
Q psy1095         243 FTCRVANEL-G--EVVTSACLIVDVVKG-KD--------LTSDGRL-----------N-IIT------------------  280 (325)
Q Consensus       243 Y~C~~~~~~-~--~~~~~~~l~v~~~~~-~~--------~~~~~~~-----------~-~~~------------------  280 (325)
                      |+|.+.|.. +  .....+.|.|..... +.        +..+..+           . .+.                  
T Consensus        73 Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~~v~W~k~g~~~~~~~~~~~~~~~  152 (198)
T 1ugn_A           73 YRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHAR  152 (198)
T ss_dssp             EEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSCCSEEEEEEC------CEEEC-----
T ss_pred             EEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCCCcEEEEEECCCccCCccccccccCC
Confidence            999999976 4  334445565543111 00        0000000           0 000                  


Q ss_pred             eCCEEEEEEcCCCCCCCeEEEEEEECCCee-----EEeEEEEEEec
Q psy1095         281 VGGTSVLTIEDITGDDSGKYQVHVSNQHGS-----DSCYASVAVEG  321 (325)
Q Consensus       281 ~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~~  321 (325)
                      ......|.|.+++.+|+|.|+|.|.|..+.     .+..+.|.|.+
T Consensus       153 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (198)
T 1ugn_A          153 GSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVLG  198 (198)
T ss_dssp             -CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEEC
T ss_pred             CcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEecC
Confidence            012368999999999999999999998762     24567777764

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.70  E-value=3.5e-16  Score=117.99  Aligned_cols=138  Identities=19%  Similarity=0.211  Sum_probs=95.0

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.++. +.+.|++++..+.....                .+.|.+++.+|+|.|
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~-~~~~W~~~g~~~~~~~~----------------~~~~~~~~~~d~G~Y   66 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPES-DSIQWFHNGNLIPTHTQ----------------PSYRFKANNNDSGEY   66 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSS-SCEEEEETTEECTTCCS----------------SEEEEECCGGGCEEE
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCc-ceEEEEECCeEcccCcc----------------ceEEEecccccCeEE
Confidence            4566666666778999999999999887632 78999999998865422                356678999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEeeC------CeecCCCCc-------------eE---------EEEeCCEEEEEEcCCCCC
Q psy1095         244 TCRVANELGEVVTSACLIVDVVK------GKDLTSDGR-------------LN---------IITVGGTSVLTIEDITGD  295 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~~~------~~~~~~~~~-------------~~---------~~~~~~~~~l~i~~v~~~  295 (325)
                      +|.+.+.....  .+.|.|...+      ...+..+..             ..         +........|.|.++..+
T Consensus        67 ~C~~~~~~~s~--~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~  144 (170)
T 3ry4_A           67 TCQTGQTSLSD--PVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHS  144 (170)
T ss_dssp             EEEETTSBCCC--CEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGG
T ss_pred             EEEEeCCCceE--eEEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEecccc
Confidence            99998754433  3445543211      111111110             00         111223357999999999


Q ss_pred             CCeEEEEEEECCCee-EEeEEEEEEe
Q psy1095         296 DSGKYQVHVSNQHGS-DSCYASVAVE  320 (325)
Q Consensus       296 d~G~Y~C~a~n~~g~-~~~~~~l~V~  320 (325)
                      |+|.|+|.|.|..|. .+..+.|.|+
T Consensus       145 d~G~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          145 HSGDYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCEEEEEEEEeCcCccccccEEEEEC
Confidence            999999999999997 4555777764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.70  E-value=6.3e-16  Score=105.46  Aligned_cols=95  Identities=32%  Similarity=0.529  Sum_probs=85.3

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..+|.+...|....+.+|+++.|.|.+.+.|.|.+.|++++..+....++.+...+....|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence            35788888898899999999999999999999999999999999888888887777777899999999999999999999


Q ss_pred             CCeeEEEEEEEEEEC
Q psy1095         143 NYGSVEATARLEIMD  157 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~  157 (325)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           84 SAGSVSSSCKLTIKA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEeEEEEEEEEe
Confidence            999888888887753

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.70  E-value=7.5e-16  Score=105.10  Aligned_cols=94  Identities=23%  Similarity=0.377  Sum_probs=82.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+....++... ..++..+|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            4788888888999999999999999999999999999999999877665543 245567899999999999999999999


Q ss_pred             CCeeEEEEEEEEEEC
Q psy1095         143 NYGSVEATARLEIMD  157 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~  157 (325)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999888888888764

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.69  E-value=4.2e-16  Score=121.55  Aligned_cols=141  Identities=15%  Similarity=0.204  Sum_probs=92.0

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC---------------C--CCceEEEecCCcceeEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD---------------S--DMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~---------------~--~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ....+.+|+.+.|.|...+.+.  +.+.|++++......               .  ..+.....       ...|.|.+
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-------~~~L~i~~   77 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLAL--GAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-------NGSLLFQM   77 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSC--SEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-------TSCEEECS
T ss_pred             ccceeecCCcEEEEEeCCCCCc--eEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-------CCeEEEcc
Confidence            3457889999999999766666  899999875422110               0  00111001       13699999


Q ss_pred             CCCCCCeEEEEEEEeCC-CcEEeEEEEEEEeeCC------------------------------------eecCCCCceE
Q psy1095         235 VYPEDEGEFTCRVANEL-GEVVTSACLIVDVVKG------------------------------------KDLTSDGRLN  277 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~------------------------------------~~~~~~~~~~  277 (325)
                      ++.+|+|.|+|.+.+.. +.....+.|.|.....                                    ..+..+.+..
T Consensus        78 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~pp~i~W~~~g~~l~~~~~~~  157 (208)
T 3r4d_A           78 ITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMT  157 (208)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTTCEEEEEETTEECCCCSSEE
T ss_pred             ccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCCCceEEEECCEeCCCCCCeE
Confidence            99999999999999985 4555555666643211                                    1111111111


Q ss_pred             EEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeE-EEEEEeccc
Q psy1095         278 IITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY-ASVAVEGRK  323 (325)
Q Consensus       278 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p  323 (325)
                      .  ......|.|.++..+|+|.|+|.|.|..|..... ++|.|..+|
T Consensus       158 ~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~  202 (208)
T 3r4d_A          158 L--SQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP  202 (208)
T ss_dssp             E--ETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC---
T ss_pred             E--cCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCC
Confidence            1  1122579999999999999999999999986654 788887765

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.69  E-value=4.1e-16  Score=121.53  Aligned_cols=169  Identities=16%  Similarity=0.188  Sum_probs=107.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeCC----------CCCcEEEEec---CCeEEEEEccCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPAT----------PNARVTIREK---EDLRFLEISEVTLED  132 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~~----------~~~~~~~~~~---~~~~~l~i~~~~~~d  132 (325)
                      +...|..+.+.+|++++|.|.+.+.+ +.+.|||..  ....          ...++.+...   .+..+|.|.+++.+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            45667778899999999999997644 479999853  1110          1346665544   456789999999999


Q ss_pred             CeEEEEEEEeCCe-----------eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEe
Q psy1095         133 AGLYTIKVENNYG-----------SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF  201 (325)
Q Consensus       133 ~G~Y~C~~~~~~~-----------~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~  201 (325)
                      +|.|.|.+.+..+           .......|.|........+|.+..       ..+ .+.|.|.+.+.++..+.+.|+
T Consensus        83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~-------~~~-~~~l~C~~~g~~P~~~~v~W~  154 (207)
T 1ypz_E           83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFI-------MKN-GTNVACLVKDFYPKEVTISLR  154 (207)
T ss_dssp             CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEE-------EEE-TTEEEEEEEEESSSCCEEEEE
T ss_pred             CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEE-------eCC-CCeEEEEEeeEeCCCeEEEEe
Confidence            9999999987531           112335677765322222343322       112 379999999876544799999


Q ss_pred             eCCEEeccCCCCceEEEecCCcceeEEEEEeCC-CCCCCCeEEEEEEEeCCCcE
Q psy1095         202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH-VYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      ++ ..+..... ......++       .+.+.. ...+|.|.|+|.+.|..+..
T Consensus       155 ~~-~~l~~~~~-~~~~~~~g-------~y~~~~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          155 SS-KKIVEFDP-AIVISPSG-------KYSAVKLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             CS-SEEEECCC-EEEECTTS-------SEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred             cC-CcccCCcc-ceEEcCCC-------cEEEEEeecccCCCcEEEEEEECCccE
Confidence            99 66643321 11111122       122222 23367899999999987543

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.68  E-value=4.9e-18  Score=133.28  Aligned_cols=184  Identities=16%  Similarity=0.165  Sum_probs=112.6

Q ss_pred             CCee-EecCCceEecCCCeEEEEEEEEecCC---CeeEEeeCCeeCCCCCcE-EE-EecC---CeEEEEEccCCCCCCeE
Q psy1095          65 SPRF-YAVPHNKICDLGDTVRFQCSVTGQPA---PWTSWSKDGKPATPNARV-TI-REKE---DLRFLEISEVTLEDAGL  135 (325)
Q Consensus        65 ~p~~-~~~~~~~~v~~g~~v~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~-~~-~~~~---~~~~l~i~~~~~~d~G~  135 (325)
                      +|.+ ...|....+.+|++++|.|.+.+.+.   +.|.| + +..+...... .. ...+   ....|.|.+++.+|+|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            3444 45577777899999999999988643   68999 4 4333211000 00 0001   23468888888899999


Q ss_pred             EEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCc-CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCc
Q psy1095         136 YTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLE-NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK  214 (325)
Q Consensus       136 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~-~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~  214 (325)
                      |+|.+.+..+.......+.+..   ...+|.+..... ...+..|+.+.|.|.+.+++++.+.+.|+++|..+.......
T Consensus        81 Y~C~~~~~~~~~~~~~~i~~~~---~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  157 (214)
T 1ow0_A           81 FTCTAAYPESKTPLTATLSKSG---NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT  157 (214)
T ss_dssp             EEEEECCSSCSSCEEEEEECCS---SCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE
T ss_pred             EEEEEecCCCCCceeEeeccCC---CCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee
Confidence            9999988765322222222111   123455543332 223567889999999999755336999999998876442111


Q ss_pred             e-EEEe---cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         215 P-EVQV---DSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       215 ~-~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      . ....   .+..+...+.|.+.....+|.|.|+|.|.|....
T Consensus       158 ~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          158 WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             CCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             cCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            0 1111   2223344456777665555689999999997643

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.68  E-value=2.3e-15  Score=139.35  Aligned_cols=221  Identities=16%  Similarity=0.218  Sum_probs=142.2

Q ss_pred             CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCC-CCCeEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095          79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL-EDAGLYTIKVENNYGSVEATARLEIMD  157 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~l~v~~  157 (325)
                      .+..+.|.|.+.|.|.|.+.|.++|..+.....         ..+.|..+.. ...+.|.|.+.+..|..... .+.+..
T Consensus        90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~---------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~  159 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLG  159 (731)
T ss_dssp             CSEEEEEEEEETTCCCCSEEEEECCCCCSSCEE---------EEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEES
T ss_pred             CcceEEEEEecCCCCccceeEEEeCCcCCceeE---------EEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeee
Confidence            345899999999999999999999987643221         1245554422 33478888766666543321 122222


Q ss_pred             CCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeE-Ee--eCCEEeccCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS-WF--RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       158 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      .. ...+|.+. .+....+..|+.+.|.|.+.|.|.  +.+. |+  +++..+......    ...  .....+.|.|.+
T Consensus       160 ~~-~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~--p~i~~W~~~~~g~~l~~~~~~----~~~--~~~~~~~l~I~~  229 (731)
T 2v5y_A          160 HP-CTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTV--AGDRLWLQGIDVRDAPLKEIK----VTS--SRRFIASFNVVN  229 (731)
T ss_dssp             SC-CSSSCEEC-CCCCEEEETTSCEEEEEEEESCCC--TTCEEEEEESSSCCEEEEEEE----ECC--SSEEEEEEEECS
T ss_pred             cc-cccccccc-cccceEEeCCCcEEEEEEeCCCCC--CceeEEEecCCCccccccceE----Eec--cccceEEEEEcc
Confidence            11 12346665 455788999999999999999998  6776 88  677665432110    011  111347899999


Q ss_pred             CCCCCCeEEEEEEEeCCCc-EEeEEEEEEEeeCCeecC-------------------CC--Cc---eEE-----------
Q psy1095         235 VYPEDEGEFTCRVANELGE-VVTSACLIVDVVKGKDLT-------------------SD--GR---LNI-----------  278 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~-------------------~~--~~---~~~-----------  278 (325)
                      +...|.|.|+|.|.|..|. ....+.|.|...+..+..                   .+  +.   +.+           
T Consensus       230 ~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~  309 (731)
T 2v5y_A          230 TTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWND  309 (731)
T ss_dssp             CCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEE
T ss_pred             cccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceE
Confidence            9999999999999999997 566666777544332110                   00  11   011           


Q ss_pred             EEeCCEEEEEEcCCCCCCCeEEEEEEE--CCCeeEEeEEEEEE
Q psy1095         279 ITVGGTSVLTIEDITGDDSGKYQVHVS--NQHGSDSCYASVAV  319 (325)
Q Consensus       279 ~~~~~~~~l~i~~v~~~d~G~Y~C~a~--n~~g~~~~~~~l~V  319 (325)
                      ........+.|.++...+.+.|+|.|.  |..|....+..+.+
T Consensus       310 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~  352 (731)
T 2v5y_A          310 RQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRT  352 (731)
T ss_dssp             EEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEE
T ss_pred             EeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEe
Confidence            111223478899999999999999999  99997664433333

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.68  E-value=2.4e-16  Score=124.27  Aligned_cols=127  Identities=20%  Similarity=0.278  Sum_probs=89.4

Q ss_pred             CCCCCCcccCCCCCCCcccccccccccc----cccC---CCCeeEecCCceEecCCCeEEEEEEE-EecCCCeeEEee-C
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRT----RRLT---SSPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSK-D  102 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~----~~~~---~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~-~  102 (325)
                      ..+|.|.+++.+|+|.|+|.+.+.....    ..+.   .+|.+...+ ...+.+|+.+.|.|.+ .+.|.+.+.|++ +
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~  149 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQ  149 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTT
T ss_pred             eEEEEECCcccccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCC
Confidence            4679999999999999999997643222    2222   235555544 3457889999999999 788999999999 4


Q ss_pred             CeeCCCCCcEEEEe--cCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCC
Q psy1095         103 GKPATPNARVTIRE--KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       103 ~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      +..+..........  .+....|.|.+++.+|.|.|+|.+.|..+.....+.|.|..+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          150 GVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             SCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred             CccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence            55554322222222  1223457899999999999999999999988888888887754

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.68  E-value=1.9e-15  Score=117.26  Aligned_cols=139  Identities=14%  Similarity=0.117  Sum_probs=93.8

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      .+.+|+.+.|.|.+.|.|.  +.+.|++..... ...  ...  ..+    ....|.|.+++.+|+|.|.|.|.|..+..
T Consensus        12 ~~~~G~~v~L~C~~~g~P~--p~i~W~~~~~~~-~~~--~~~--~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~   80 (202)
T 1vca_A           12 LAQIGDSVSLTCSTTGCES--PFFSWRTQIDSP-LNG--KVT--NEG----TTSTLTMNPVSFGNEHSYLCTATCESRKL   80 (202)
T ss_dssp             EEETTSCEEEEEEEESCSS--CEEEEEETTCCC-CSS--EEE--EET----TEEEEEESSCCGGGCSEEEEEEEETTEEE
T ss_pred             EEcCCCcEEEEEeecCCCC--CeEEEECCCCCC-ccc--eEE--EcC----CccEEEECcCCHHHCEEEEEEEEECCceE
Confidence            3458999999999998887  789999843110 000  111  111    23579999999999999999999998877


Q ss_pred             EeEEEEEEEeeCCeec-------CCC---------------CceE-EEEeC--------------------CEEEEEEcC
Q psy1095         255 VTSACLIVDVVKGKDL-------TSD---------------GRLN-IITVG--------------------GTSVLTIED  291 (325)
Q Consensus       255 ~~~~~l~v~~~~~~~~-------~~~---------------~~~~-~~~~~--------------------~~~~l~i~~  291 (325)
                      ...+.|.|...+....       ..+               .... .+..+                    ....|.|..
T Consensus        81 ~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~  160 (202)
T 1vca_A           81 EKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTP  160 (202)
T ss_dssp             EEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECC
T ss_pred             eeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEe
Confidence            7777787754332110       000               0000 01111                    123467888


Q ss_pred             CCCCCCeEEEEEEECCCee-------EEeEEEEEEecccC
Q psy1095         292 ITGDDSGKYQVHVSNQHGS-------DSCYASVAVEGRKI  324 (325)
Q Consensus       292 v~~~d~G~Y~C~a~n~~g~-------~~~~~~l~V~~~p~  324 (325)
                      +..+|.|.|+|.|.|..|.       .+.++.|.|..+|.
T Consensus       161 ~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          161 VIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             eeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            8888999999999999876       56788999999884

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.67  E-value=1.3e-15  Score=103.82  Aligned_cols=94  Identities=31%  Similarity=0.519  Sum_probs=80.4

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC-cEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .||.+...|....+.+|+++.|.|.+.+.|.|.+.|++++..+.... ++.....+...+|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            47888888888899999999999999999999999999999887654 34444445556899999999999999999999


Q ss_pred             CCeeEEEEEEEEEEC
Q psy1095         143 NYGSVEATARLEIMD  157 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~  157 (325)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999888888888754

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.67  E-value=5.4e-17  Score=124.15  Aligned_cols=115  Identities=13%  Similarity=0.100  Sum_probs=90.1

Q ss_pred             CCCCCCcccCCCCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCc
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR  111 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~  111 (325)
                      ..+|.|.+++.+|+|.|+|.+.+..... .+... .+. .+....+.+|++++|.|.+.+.|.+.+.|++++..+.    
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~-~l~V~-~~~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~----  139 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQKEEV-QLLVF-GLT-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI----  139 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTEEEEE-EEEEE-EEE-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE----
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcCCCcE-EEEEE-Eec-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc----
Confidence            4569999999999999999998775421 11110 122 3445578999999999999889999999999875541    


Q ss_pred             EEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCC
Q psy1095         112 VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       112 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                         .   ....|.|.+++.+|+|.|+|.+.|..+.....+.|.|...+
T Consensus       140 ---~---~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          140 ---Q---GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             ---E---ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             ---c---CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence               1   12369999999999999999999999888888999988763

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.67  E-value=9.1e-18  Score=131.05  Aligned_cols=115  Identities=19%  Similarity=0.264  Sum_probs=88.5

Q ss_pred             CCCCCcccCCCCCCCcccccccccc-------cccccCCCCeeEecCCceEecCCCeEEEEEEE-EecCCCeeEEeeCCe
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI-------RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGK  104 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~-------~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~  104 (325)
                      .+|.|.+++.+|+|.|+|.+.+..+       ....+..+|.+...+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~  147 (209)
T 1nbq_A           68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGI  147 (209)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTC
T ss_pred             cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCe
Confidence            6788999999999999999987532       12333466666655666678999999999996 889999999999998


Q ss_pred             eCCCCCcE-------EEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095         105 PATPNARV-------TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus       105 ~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      .+......       ..........|.|.+++.+|+|.|+|.+.|..|..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          148 VMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             CCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             eCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            87654321       01111133569999999999999999999998866

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.67  E-value=3.5e-17  Score=125.44  Aligned_cols=120  Identities=13%  Similarity=0.133  Sum_probs=86.0

Q ss_pred             eecccCCCCcccCCCCCCCCCCCCCcc-cCCCCCCCcccccccccccc-----cccC--CCCe----------------e
Q psy1095          13 VKLTRPSGLMSGHSTPRSTPRSTPPRS-ISPLSSRTFTPYSLNSAIRT-----RRLT--SSPR----------------F   68 (325)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~i~~-v~~~d~G~Y~c~~~~~~~~~-----~~~~--~~p~----------------~   68 (325)
                      ++|.+++..+...     ..++|.|.+ ++.+|+|.|+|.+.+..+..     ..+.  .+|.                +
T Consensus        29 i~W~k~g~~l~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  103 (186)
T 1jbj_A           29 LKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKD  103 (186)
T ss_dssp             CEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTT
T ss_pred             eEEEECCEECCCC-----CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCcccc
Confidence            6788877766543     345799999 99999999999998875531     1111  1111                1


Q ss_pred             Eec--C--Cc---eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          69 YAV--P--HN---KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        69 ~~~--~--~~---~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      ...  +  ..   ..+.+|+++.|.|.+   |.|.++|+|++..+.....       ....|.|.+++.+|+|.|+|.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~  173 (186)
T 1jbj_A          104 GSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGA  173 (186)
T ss_dssp             CCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEES
T ss_pred             ccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEE
Confidence            000  0  01   124499999999988   7889999999999864322       23459999999999999999999


Q ss_pred             eCCeeE
Q psy1095         142 NNYGSV  147 (325)
Q Consensus       142 ~~~~~~  147 (325)
                      |..+..
T Consensus       174 N~~g~~  179 (186)
T 1jbj_A          174 KETSNP  179 (186)
T ss_dssp             SCEEEE
T ss_pred             cCcCCc
Confidence            987754

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.66  E-value=1.3e-15  Score=123.56  Aligned_cols=185  Identities=15%  Similarity=0.281  Sum_probs=114.9

Q ss_pred             CCceEecCCCeEEEEEEEEe--cCCCeeEEeeCC--ee---C---CC-----------CCcEEEEec--CCeEEEEEccC
Q psy1095          72 PHNKICDLGDTVRFQCSVTG--QPAPWTSWSKDG--KP---A---TP-----------NARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~--~~---~---~~-----------~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      |....+.+|++|+|.|.+.+  .....+.||+..  ..   +   ..           ..++.+..+  ....+|.|.++
T Consensus        30 ~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  109 (267)
T 3u1s_H           30 SGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGL  109 (267)
T ss_dssp             CCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSC
T ss_pred             eCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCC
Confidence            34567899999999999865  345688999742  11   0   00           235555433  24567999999


Q ss_pred             CCCCCeEEEEEEEeC------Ce------------e-------EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEE
Q psy1095         129 TLEDAGLYTIKVENN------YG------------S-------VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT  183 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~~------~~------------~-------~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~  183 (325)
                      +.+|+|.|.|.+.+.      .+            .       ......|.|...  ...+|.+........+..|+.+.
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~--~~~~P~v~~~~~~~~~~~g~~~~  187 (267)
T 3u1s_H          110 TADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSA--STKGPSVFPLAPSSKSTSGGTAA  187 (267)
T ss_dssp             CGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCC--CCBCCEEEEECCCGGGEETTEEE
T ss_pred             ChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCC--CCCCCEEEEecCCcccCCCCcEE
Confidence            999999999998621      00            0       111235566422  12456665333333346799999


Q ss_pred             EEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095         184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       184 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      |.|.+.+..+..+.+.|  ++..+.............+..+...+.|.|.....+| |.|+|.+.+..........+.
T Consensus       188 l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~  262 (267)
T 3u1s_H          188 LGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  262 (267)
T ss_dssp             EEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEcc
Confidence            99999886553478999  4444322111000111222344455789999888888 999999999876655444443

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=4.7e-16  Score=106.03  Aligned_cols=93  Identities=19%  Similarity=0.399  Sum_probs=81.4

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..+|.|...+.+..+.+|+++.|.|.+  .|.+.++|+|+|..+....++.+...+....|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            5 SSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             SCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            357788888889999999999999999  788999999999999988888888877778899999999999999999988


Q ss_pred             CCeeEEEEEEEEEECCC
Q psy1095         143 NYGSVEATARLEIMDPR  159 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~  159 (325)
                      .  .....+.|.|..+|
T Consensus        83 ~--~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           83 Y--NVTLPAKVHVISGP   97 (100)
T ss_dssp             S--CCCEEEEEEEECCS
T ss_pred             C--CeeEEEEEEEeCCC
Confidence            7  44567778887653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.66  E-value=9.9e-16  Score=103.16  Aligned_cols=89  Identities=20%  Similarity=0.361  Sum_probs=75.9

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      +|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++  ..+.....  .........|.|.+++.+|+|.|+|.+.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL--VDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE--EEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE--EEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            688877788888999999999999999999999999999  87765432  33335567899999999999999999999


Q ss_pred             CCeeEEEEEEEEE
Q psy1095         143 NYGSVEATARLEI  155 (325)
Q Consensus       143 ~~~~~~~~~~l~v  155 (325)
                      ..|.....+.|.|
T Consensus        80 ~~G~~~~~~~l~V   92 (93)
T 1wit_A           80 ELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9998888877776

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.66  E-value=4.6e-16  Score=126.28  Aligned_cols=152  Identities=15%  Similarity=0.194  Sum_probs=93.8

Q ss_pred             eeecCcCeeEecCCcEEEEEEEE---ecCCCCCeeEEeeCCEEeccC--------------CCCceEEEecCCcceeEEE
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQ---VVPPNDHDISWFRNNRLIKLD--------------SDMKPEVQVDSKENLVIAR  229 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~---~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~  229 (325)
                      +...+....+.+|+.+.|.|.+.   +.+.  +.+.|++++......              ..+.......+........
T Consensus         8 v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHV--DRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ----CCEEEEETTCCEEECCBCCCSSCCCE--EEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccCCCceEEecCCcEEEEEEeecCCCCce--EEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            33444567788999999999987   4444  789999965422111              0000000011111112257


Q ss_pred             EEeCCCCCCCCeEEEEEEEeCCCcE--EeEEEEEEEeeCCe----------ecC--C---C----CceEEEEe-------
Q psy1095         230 LKIPHVYPEDEGEFTCRVANELGEV--VTSACLIVDVVKGK----------DLT--S---D----GRLNIITV-------  281 (325)
Q Consensus       230 l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~----------~~~--~---~----~~~~~~~~-------  281 (325)
                      |.|.+++.+|+|.|+|.+.+..+..  ...+.|.|....+.          .+.  .   .    ..+.....       
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~  165 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEE  165 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSC
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcc
Confidence            9999999999999999999876544  33444444211111          010  0   0    11111110       


Q ss_pred             --------------------------------CCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEe
Q psy1095         282 --------------------------------GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       282 --------------------------------~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  320 (325)
                                                      .....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (268)
T 3mj6_A          166 ETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV  236 (268)
T ss_dssp             EEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence                                            124579999999999999999999999999999999994

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.66  E-value=7.9e-16  Score=118.08  Aligned_cols=147  Identities=16%  Similarity=0.164  Sum_probs=94.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+.. .+.+|+.++|.|.+.+ ++  ..+.|+|++..+.......       ........|.|.+++.+|+|.|
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~--~~~~w~k~g~~~~~~~~~~-------~~~~~~~~L~I~~v~~~D~G~Y   72 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GA--VEYQLHFEGSLFAVDRPKP-------PERINKVKFYIPDMNSRMAGQY   72 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TC--CEEEEEETTEEEEEECCSS-------CTTCCEEEEEESSCCGGGCEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CC--CEEEEEECCCccccccccc-------CCCcceeEEEeCcCCcccCeEE
Confidence            5677666655 7899999999999864 23  6899999998765211100       0011346899999999999999


Q ss_pred             EEEEEeCCCc--EEeEEEEEEEee---------CCeecCCCC-------------ceEEE-----------EeCCEEEEE
Q psy1095         244 TCRVANELGE--VVTSACLIVDVV---------KGKDLTSDG-------------RLNII-----------TVGGTSVLT  288 (325)
Q Consensus       244 ~C~~~~~~~~--~~~~~~l~v~~~---------~~~~~~~~~-------------~~~~~-----------~~~~~~~l~  288 (325)
                      +|.+.|..+.  ....+.|.|...         +...+..+.             .+...           .......|.
T Consensus        73 ~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~  152 (188)
T 1oll_A           73 SCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFP  152 (188)
T ss_dssp             EEEEEETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEE
T ss_pred             EEEecCCCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCCCCEEEEEECCccccccccCCCceeEEE
Confidence            9999886432  233445554311         111111111             11111           123346899


Q ss_pred             EcCCCCCCCeEEEEEEECCC-e--eEEeEEEEEEec
Q psy1095         289 IEDITGDDSGKYQVHVSNQH-G--SDSCYASVAVEG  321 (325)
Q Consensus       289 i~~v~~~d~G~Y~C~a~n~~-g--~~~~~~~l~V~~  321 (325)
                      |.+++.+|+|.|+|.|.|.. .  ..+..+.|.|.+
T Consensus       153 I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~g  188 (188)
T 1oll_A          153 LGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  188 (188)
T ss_dssp             EEECCGGGCEEEEEECEEETTEECCCCCCEEEEEEC
T ss_pred             ECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEecC
Confidence            99999999999999999875 2  234457777764

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.66  E-value=1.2e-15  Score=104.33  Aligned_cols=95  Identities=31%  Similarity=0.483  Sum_probs=80.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE-EEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.|...|....+.+|+++.|.|.+.+.|.|.+.|++++..+....+. .....++...|.|.+++..|+|.|+|.+.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            4677878888888999999999999999999999999999988765433 233344556899999999999999999999


Q ss_pred             CCeeEEEEEEEEEECC
Q psy1095         143 NYGSVEATARLEIMDP  158 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~  158 (325)
                      ..|.....+.|.|...
T Consensus        84 ~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEec
Confidence            9999888888888753

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.65  E-value=1.5e-14  Score=108.96  Aligned_cols=162  Identities=17%  Similarity=0.183  Sum_probs=109.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCCcEEE-EecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTI-REKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +.+.|....|.+|+++.|+|.+.. +.|. +.|...   +   .+... ........|.|.+++. | |.|.|.+.....
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~---l---~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~   72 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETP---L---PKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDG   72 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECS-SSCSEEEEECS---S---CEEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSC
T ss_pred             eEEECCCcEEeCCCCEEEEEEccC-CCCccceEEee---C---CCccEeccCCceeEEEEEecCc-C-CEEEEEEECCCC
Confidence            446677788999999999999864 4454 677531   0   01111 1112234588899974 3 999999977656


Q ss_pred             eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCCceEEEecCCcc
Q psy1095         146 SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMKPEVQVDSKEN  224 (325)
Q Consensus       146 ~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  224 (325)
                      ...+.+.|.|+.+|.     .+...+....+.+|+.++|.|.+.+..|. .+.+.|++++..+......     ...   
T Consensus        73 ~~~~~~~l~V~~~P~-----~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~-----~~~---  139 (185)
T 1iam_A           73 QSTAKTFLTVYWTPE-----RVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV-----GEP---  139 (185)
T ss_dssp             EEEEECEEEEEBCCS-----EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-----TTT---
T ss_pred             ceEEEEEEEEeCCCC-----CCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCC-----Ccc---
Confidence            677888999987643     34444445568899999999999986553 2358999999988643210     011   


Q ss_pred             eeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         225 LVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       225 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                       ...+|.+...+.+|.+.|+|.|.|..+
T Consensus       140 -~~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          140 -AEVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             -EEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             -ccEEEEEeceeccCCCeEEEEEEecCc
Confidence             224677776666666699999998776

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.65  E-value=2.3e-15  Score=101.00  Aligned_cols=89  Identities=17%  Similarity=0.275  Sum_probs=76.1

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.|...+.+..+.+|+++.|.|.+.+ +.+.++|+|+|.++....++.+...+....|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            5788889999999999999999999976 457899999999998888888887777789999999999999999999663


Q ss_pred             CeeEEEEEEEEEEC
Q psy1095         144 YGSVEATARLEIMD  157 (325)
Q Consensus       144 ~~~~~~~~~l~v~~  157 (325)
                          ..+..|.|..
T Consensus        83 ----~~sa~L~V~~   92 (93)
T 1waa_A           83 ----KSAANLKVKE   92 (93)
T ss_dssp             ----EEEEEEEEEC
T ss_pred             ----cEEEEEEEEc
Confidence                3455666653

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.65  E-value=5e-16  Score=107.28  Aligned_cols=97  Identities=30%  Similarity=0.510  Sum_probs=85.8

Q ss_pred             cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEE
Q psy1095          60 RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        60 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                      .....+|.|...|....+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+........|.|.+++..|+|.|+|.
T Consensus         9 ~~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (106)
T 1nct_A            9 SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV   88 (106)
T ss_dssp             CCSSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEEC
T ss_pred             CCCCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEE
Confidence            34457889999999999999999999999999999999999999998887888877766678899999999999999999


Q ss_pred             EEeCCeeEEEEEEEEEE
Q psy1095         140 VENNYGSVEATARLEIM  156 (325)
Q Consensus       140 ~~~~~~~~~~~~~l~v~  156 (325)
                      +.|..|.....+.|.|.
T Consensus        89 a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           89 VENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CBCSSCBCCEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            99999887777777764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=5.3e-15  Score=104.32  Aligned_cols=96  Identities=21%  Similarity=0.430  Sum_probs=80.7

Q ss_pred             cCCCCeeEec---CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEE
Q psy1095          62 LTSSPRFYAV---PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        62 ~~~~p~~~~~---~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      +..+|.+...   +....+.+|+++.|.|.+.|.|.|.+.|++++..+. ..++.+...+....|.|.+++..|+|.|+|
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   96 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYEL   96 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEE
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEE
Confidence            3356777543   456789999999999999999999999999999987 455666666667789999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEECC
Q psy1095         139 KVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~~  158 (325)
                      .+.|..|.....+.|.|...
T Consensus        97 ~a~N~~G~~~~~~~l~V~~~  116 (118)
T 2e7c_A           97 SVQIENMKDTATIRIRVVEK  116 (118)
T ss_dssp             EEECSSCEECCEEEEEEECC
T ss_pred             EEEeCCCeEEEEEEEEEEcC
Confidence            99999998888888888765

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.65  E-value=6.2e-15  Score=100.05  Aligned_cols=91  Identities=19%  Similarity=0.327  Sum_probs=79.9

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      .+...|.+..+.+|+++.|.|.+.+. |.|.+.|++++..+....++.+...++...|.|.+++..|+|.|+|.+.|..|
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            34556778889999999999999997 89999999999999888888876667777899999999999999999999999


Q ss_pred             eEEEEEEEEEEC
Q psy1095         146 SVEATARLEIMD  157 (325)
Q Consensus       146 ~~~~~~~l~v~~  157 (325)
                      .....+.|.|..
T Consensus        83 ~~~~~~~l~V~~   94 (97)
T 2bk8_A           83 EDSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEEETT
T ss_pred             eEeEEEEEEEEe
Confidence            888888888764

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.64  E-value=3.6e-15  Score=104.75  Aligned_cols=100  Identities=24%  Similarity=0.457  Sum_probs=85.6

Q ss_pred             cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEecC-CeEEEEEccCCCCCCeEEE
Q psy1095          60 RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKE-DLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        60 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~  137 (325)
                      .....+|.|+..|....+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..++.+...+ +..+|.|.+++.+|+|.|+
T Consensus        10 ~~~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (116)
T 2kkq_A           10 HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYT   89 (116)
T ss_dssp             CCCCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEE
T ss_pred             cCCCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEE
Confidence            3445688999999999999999999999999999999999999998874 4566665543 3458999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEECCC
Q psy1095         138 IKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      |.+.|..|.....+.|.|...+
T Consensus        90 C~a~N~~G~~~~~~~l~V~~~p  111 (116)
T 2kkq_A           90 VSAVNEAGVTTCNTRLDVTARP  111 (116)
T ss_dssp             EEEEETTEEEEEEEEEEEECCS
T ss_pred             EEEEcCCCeEEEEEEEEEeCCC
Confidence            9999999988888899998764

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.64  E-value=1e-16  Score=123.91  Aligned_cols=132  Identities=11%  Similarity=0.087  Sum_probs=81.3

Q ss_pred             eeecccCCCCcccCC---CCCCCCCCCCCcccCCCCCCCcccccccccccc-------cccCC---CCeeEecCCceEec
Q psy1095          12 SVKLTRPSGLMSGHS---TPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-------RRLTS---SPRFYAVPHNKICD   78 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~---~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-------~~~~~---~p~~~~~~~~~~v~   78 (325)
                      .+.|.+++..+....   ........|.|.+++++|+|.|+|.+.+..+..       ..+..   +|.+...|. ..+.
T Consensus        34 ~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~  112 (196)
T 2d3v_A           34 EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVT  112 (196)
T ss_dssp             EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC--------
T ss_pred             EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCC-cccc
Confidence            567777776553221   112334678899999999999999997653311       22222   566655543 4688


Q ss_pred             CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE-EEEe-cCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIRE-KEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +|++++|.|.+.+.| +.+.|+|++..+...... .... ......|.|.+++.+|+|.|+|.+.|..+
T Consensus       113 ~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          113 SGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             ----CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             CCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            999999999999888 899999999876432111 1111 12236799999999999999999998764

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.64  E-value=7e-15  Score=108.86  Aligned_cols=101  Identities=30%  Similarity=0.388  Sum_probs=87.0

Q ss_pred             cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEE
Q psy1095          60 RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-EDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        60 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      ..+..+|.|...+....+.+|+++.|.|.+.+.|.|.+.|+|++..+....++.+... .+...|.|.+++..|+|.|+|
T Consensus        36 ~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  115 (154)
T 1fhg_A           36 EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC  115 (154)
T ss_dssp             CCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEE
T ss_pred             ccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEE
Confidence            4445688999888889999999999999999999999999999999988777776643 345789999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEECCCc
Q psy1095         139 KVENNYGSVEATARLEIMDPRA  160 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~~~~  160 (325)
                      .+.|..|.....+.|.|...+.
T Consensus       116 ~a~N~~G~~~~~~~l~V~~~p~  137 (154)
T 1fhg_A          116 KAVNSLGEATCTAELLVETMGK  137 (154)
T ss_dssp             EEEETTEEEEEEEEEEEECC--
T ss_pred             EEEECCCeEEEEEEEEEeCcCc
Confidence            9999999988888999987643

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.64  E-value=2.3e-16  Score=124.30  Aligned_cols=126  Identities=7%  Similarity=0.049  Sum_probs=84.7

Q ss_pred             CCCCCcccCCCCCCCcccccccccccc----cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC-CeeCC
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIRT----RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD-GKPAT  107 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~~----~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~-~~~~~  107 (325)
                      .+|.|.+++.+|+|.|+|.+.+.....    ..+..+|..........+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~  159 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS  159 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC
T ss_pred             EEEEEcCcccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec
Confidence            378999999999999999998732211    2222333322222222567899999999999999999999998 55554


Q ss_pred             CCCcEEEEe--cCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095         108 PNARVTIRE--KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       108 ~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      .........  .+......+..+...|.|.|+|.+.|..+.....+.|.|...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  212 (222)
T 3sbw_C          160 GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL  212 (222)
T ss_dssp             CEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC
T ss_pred             CccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCC
Confidence            322221111  111112222345678999999999999998888888887654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.64  E-value=9.2e-16  Score=116.33  Aligned_cols=138  Identities=14%  Similarity=0.131  Sum_probs=90.3

Q ss_pred             eeEecCCcEEEEEEEEe--cCCCCCeeEEeeCCEEeccC--------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         174 LRCCDGDSVTFECQVQV--VPPNDHDISWFRNNRLIKLD--------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~--~~~~~~~~~W~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +.+.+|+.+.|.|....  .+.  +.+.|++++..+..-        ...+.....+       ..|.|.+++.+|+|.|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~--~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~-------gsL~I~~v~~~D~G~Y   76 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDI--DEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN-------GDLKIKNLTRDDSGTY   76 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTE--EEEEEEETTEEEEEEETTSCCEESSTTEEECTT-------SCEEESSCCGGGCEEE
T ss_pred             EEEEcCCcEEEcCCCCCccccc--ccEEEEeCCceeEEEcCCCeecCCCCeEEECCC-------CcEEEcccccccCEEE
Confidence            45678999999994322  223  689999998755310        0111111122       2599999999999999


Q ss_pred             EEEEEeCCCcE--EeEEEEEEEeeCCe-ecC-------------CCCceE-EEEeCCEE-----EEEEcCCCCCCCeEEE
Q psy1095         244 TCRVANELGEV--VTSACLIVDVVKGK-DLT-------------SDGRLN-IITVGGTS-----VLTIEDITGDDSGKYQ  301 (325)
Q Consensus       244 ~C~~~~~~~~~--~~~~~l~v~~~~~~-~~~-------------~~~~~~-~~~~~~~~-----~l~i~~v~~~d~G~Y~  301 (325)
                      +|.+.|..|..  ...+.|.|...... .+.             ...... .+..++..     .+.|..+..+|+|.|+
T Consensus        77 ~C~~~n~~g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~~~~~~d~G~Y~  156 (176)
T 1hng_A           77 NVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFK  156 (176)
T ss_dssp             EEEEEETTCCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEE
T ss_pred             EEEEEeCCCCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEEEEEccCCeEEE
Confidence            99999999886  55666776543221 111             011111 22223321     2456678899999999


Q ss_pred             EEEECCCeeEEeEEEEEEe
Q psy1095         302 VHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       302 C~a~n~~g~~~~~~~l~V~  320 (325)
                      |.|.|..|..+....|.+.
T Consensus       157 C~a~N~~g~~~~~~~l~~~  175 (176)
T 1hng_A          157 CKAVNRVSQESEMEVVNCP  175 (176)
T ss_dssp             EEEEETTEEEEEEECCCCC
T ss_pred             EEEEecCCCceecccccCC
Confidence            9999999999998887664

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.64  E-value=4.6e-16  Score=125.46  Aligned_cols=125  Identities=18%  Similarity=0.185  Sum_probs=92.8

Q ss_pred             CCCCCcccCCCCCCCcccccccccc----------cccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCC-----ee
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI----------RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-----WT   97 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~----------~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-----~v   97 (325)
                      .+|.|.+++++|+|.|.|.+.+..+          ..+.+..+|.+...|....+.+|++++|.|.+.+.|.+     .+
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v  158 (256)
T 1nqb_A           79 AYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYL  158 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCE
T ss_pred             EEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEE
Confidence            4789999999999999999987632          12334466777777888889999999999999887764     89


Q ss_pred             EEee--CCeeCC------------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee-EEEEEEEEEEC
Q psy1095          98 SWSK--DGKPAT------------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMD  157 (325)
Q Consensus        98 ~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~  157 (325)
                      .|+|  ++..+.            ...++.........+|.|.+++.+|+|.|+|.+.+.... ......|.|..
T Consensus       159 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          159 EWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             EEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence            9999  554321            134565554556678999999999999999999874332 22334556543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.64  E-value=2e-16  Score=124.26  Aligned_cols=129  Identities=15%  Similarity=0.090  Sum_probs=90.9

Q ss_pred             eeeecccCCCCcccCCC---CCCCCC--CCCCcccCCCCCCCccccccccccc-------ccccC---CCCeeEecCCce
Q psy1095          11 LSVKLTRPSGLMSGHST---PRSTPR--STPPRSISPLSSRTFTPYSLNSAIR-------TRRLT---SSPRFYAVPHNK   75 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~---~~~~~~--~l~i~~v~~~d~G~Y~c~~~~~~~~-------~~~~~---~~p~~~~~~~~~   75 (325)
                      ....|.+++..+.....   ......  +|.|.+++.+|+|.|+|.+.+..+.       ...+.   .+|.+...| ..
T Consensus        37 ~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~  115 (218)
T 1uct_A           37 YLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GL  115 (218)
T ss_dssp             SEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS-CS
T ss_pred             CEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC-CC
Confidence            35677777665532111   112234  7899999999999999999875321       11221   366776666 45


Q ss_pred             EecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      .+.+|++++|.|...+.|.+.+.|+|++..+...  .  ........|.|.+++.+|+|.|+|.+.+..
T Consensus       116 ~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          116 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--H--QSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--E--EECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             ccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--c--cCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            6899999999997666778899999999877542  1  122345679999999999999999998753

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=116.04  Aligned_cols=127  Identities=19%  Similarity=0.161  Sum_probs=85.8

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+.. .+.+|+.++|.|.+.+ +.  +.+.|+|++....         ...       ..|.|.+++.+|+|.
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~--~~~~W~k~g~~~~---------~~~-------~~L~i~~v~~~D~G~   66 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GV--DLYRLEKLSSSRY---------QDQ-------AVLFIPAMKRSLAGR   66 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TC--SEEEEEETTTCCE---------ESS-------SEEEESSCCGGGCEE
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CC--CEEEEEECCcccc---------Ccc-------cEEEECcCChhhCce
Confidence            45677666654 7899999999999876 44  7999999886510         112       489999999999999


Q ss_pred             EEEEEEeCCCc--EEeEEEEEEEeeC---------CeecCCCCceE------------EEEeCC------------EEEE
Q psy1095         243 FTCRVANELGE--VVTSACLIVDVVK---------GKDLTSDGRLN------------IITVGG------------TSVL  287 (325)
Q Consensus       243 Y~C~~~~~~~~--~~~~~~l~v~~~~---------~~~~~~~~~~~------------~~~~~~------------~~~l  287 (325)
                      |+|.+.|..+.  ....+.|.|....         ...+..+..+.            .+..++            ...|
T Consensus        67 Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L  146 (184)
T 2gi7_A           67 YRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWYRASF  146 (184)
T ss_dssp             EEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCCCEEEEEECCCCTTSCCCCEEEEESS
T ss_pred             EEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCCcEEEEEECCCcCcceecCCCceEEE
Confidence            99999997653  2234555552211         11111111111            111211            3468


Q ss_pred             EEcCCCCCCCeEEEEEEECCCe
Q psy1095         288 TIEDITGDDSGKYQVHVSNQHG  309 (325)
Q Consensus       288 ~i~~v~~~d~G~Y~C~a~n~~g  309 (325)
                      .|.+++.+|+|.|+|.|.|..+
T Consensus       147 ~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          147 PIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             SEEEETTCCSEEEEEEEECTTS
T ss_pred             EEccCCccCCeEEEEEEEeCCC
Confidence            8999999999999999999864

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.63  E-value=2.3e-16  Score=127.06  Aligned_cols=125  Identities=16%  Similarity=0.187  Sum_probs=90.6

Q ss_pred             CCCCcccCCCCCCCccccccccccc------ccccC---------------CCCeeEecCCceEecCCCeEEEEEEEEec
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRLT---------------SSPRFYAVPHNKICDLGDTVRFQCSVTGQ   92 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~---------------~~p~~~~~~~~~~v~~g~~v~l~C~~~~~   92 (325)
                      +|.|++++++|+|.|.|.+.+....      .+.+.               .+|.+...|....+.+|++++|.|.+.+.
T Consensus        81 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  160 (253)
T 3uzq_A           81 YLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASEN  160 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSC
T ss_pred             EEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCc
Confidence            4899999999999999999873221      12222               25777888888899999999999999887


Q ss_pred             CCC----eeEEeeCC--eeCC------------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee-EEEEEEE
Q psy1095          93 PAP----WTSWSKDG--KPAT------------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-VEATARL  153 (325)
Q Consensus        93 p~~----~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l  153 (325)
                      +.+    .+.|+|++  ....            ...++.........+|.|.+++.+|+|.|+|.+.|.... ......|
T Consensus       161 ~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l  240 (253)
T 3uzq_A          161 VDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKL  240 (253)
T ss_dssp             CEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEE
T ss_pred             cccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEE
Confidence            776    89999842  2111            124565555556678999999999999999999875432 2234456


Q ss_pred             EEECC
Q psy1095         154 EIMDP  158 (325)
Q Consensus       154 ~v~~~  158 (325)
                      .|...
T Consensus       241 ~v~~~  245 (253)
T 3uzq_A          241 EIKRP  245 (253)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            66554

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.63  E-value=5.3e-14  Score=117.85  Aligned_cols=176  Identities=19%  Similarity=0.267  Sum_probs=112.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--------------CCeeEEeeC--Ce--eC---CCC----------CcEEEE---
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--------------APWTSWSKD--GK--PA---TPN----------ARVTIR---  115 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--------------~~~v~W~~~--~~--~~---~~~----------~~~~~~---  115 (325)
                      .++..+.+.+|++++|.|.+...+              ...+.||+.  ++  .+   ..+          .+....   
T Consensus       163 tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~  242 (401)
T 3f8u_B          163 THTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWD  242 (401)
T ss_dssp             ESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEES
T ss_pred             CCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeec
Confidence            445677899999999999986543              246899963  21  11   010          111111   


Q ss_pred             ------ecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCee-EecCC-cEEEEEE
Q psy1095         116 ------EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLR-CCDGD-SVTFECQ  187 (325)
Q Consensus       116 ------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~-v~~g~-~v~l~C~  187 (325)
                            ...+..+|.|.+++..|+|.|.|.+.+..+.....+.|.|...      |.+...+.... +..|+ .++|.|.
T Consensus       243 ~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~p------P~V~v~p~~~~~~~~G~~~vtL~C~  316 (401)
T 3f8u_B          243 DDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKP------PKVSLMPATLARAAPGEAPPELLCL  316 (401)
T ss_dssp             CCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBC------CEEEEESSSCCCCCTTCCCCCEEEE
T ss_pred             ccccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccC------CeEeeccCcceeecCCCccEEEEEE
Confidence                  0123578999999999999999999988777777788888764      45544433332 34676 7999999


Q ss_pred             EEecCCCC-CeeEEe-eCCE---EeccCCCC--ceEEEecCCcceeEEEEEeCCCCCCC-CeEEEEEEEeCC
Q psy1095         188 VQVVPPND-HDISWF-RNNR---LIKLDSDM--KPEVQVDSKENLVIARLKIPHVYPED-EGEFTCRVANEL  251 (325)
Q Consensus       188 ~~~~~~~~-~~~~W~-~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~  251 (325)
                      +.++++.+ +.+.|. +++.   .+......  .......+..+...+.|.+...+.++ .+.|+|.+.|..
T Consensus       317 a~GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          317 VSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             EEEEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             ecCCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            99987653 789995 7652   12111100  00111222344556678887765334 459999999876

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=3.5e-15  Score=101.74  Aligned_cols=94  Identities=28%  Similarity=0.472  Sum_probs=78.6

Q ss_pred             ccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEE
Q psy1095          59 TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        59 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      ...+..+|.+...|....+.+|+++.|.|.+.+.|.|.+.|++++..+.......   ......|.|.+++.+|+|.|+|
T Consensus         5 ~~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C   81 (99)
T 2yr3_A            5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC---EAGVAELHIQDALPEDHGTYTC   81 (99)
T ss_dssp             CSCCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE---ETTEEEEEECSCCTTCCBCEEE
T ss_pred             cCCcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe---eCCeEEEEECCCChhhCEEEEE
Confidence            3445578899988999999999999999999999999999999998886554322   2445679999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEE
Q psy1095         139 KVENNYGSVEATARLEI  155 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v  155 (325)
                      .+.|..|.....+.|.|
T Consensus        82 ~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           82 LAENALGQVSCSAWVTV   98 (99)
T ss_dssp             EEECSSCEEEEECCEEE
T ss_pred             EEEECCCeEEEEEEEEE
Confidence            99999998777776665

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.8e-15  Score=104.32  Aligned_cols=97  Identities=32%  Similarity=0.482  Sum_probs=83.0

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEec-CCeEEEEEccCCCCCCeEEEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREK-EDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      ..+|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..++.+... ++...|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            4678888888888999999999999999999999999999998875 456666554 34458999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEECCC
Q psy1095         141 ENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       141 ~~~~~~~~~~~~l~v~~~~  159 (325)
                      .|..|.....+.|.|...+
T Consensus        86 ~N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             ECTTCCEEECCCEEEECCS
T ss_pred             EECCCeEEEEEEEEEECCC
Confidence            9999988888888887753

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.63  E-value=6e-16  Score=124.24  Aligned_cols=121  Identities=16%  Similarity=0.149  Sum_probs=87.4

Q ss_pred             CCCCCcccCCCCCCCcccccccccccc----------cccCC---CCeeEec-CCceEecCCCeEEEEEEEEecCCCeeE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIRT----------RRLTS---SPRFYAV-PHNKICDLGDTVRFQCSVTGQPAPWTS   98 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~~----------~~~~~---~p~~~~~-~~~~~v~~g~~v~l~C~~~~~p~~~v~   98 (325)
                      .+|.|.+++++|+|.|+|.+.+.....          +.+..   +|.+... +....+.+|+++.|.|.+.+.|.|.+.
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~  169 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT  169 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEE
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeE
Confidence            579999999999999999998754421          22222   3444443 445677889999999999999999999


Q ss_pred             EeeCCeeCCCCCcEE----------------------EEecCCeEEEEEccCCCCCCeEEEEEEEeC---CeeEEEEEEE
Q psy1095          99 WSKDGKPATPNARVT----------------------IREKEDLRFLEISEVTLEDAGLYTIKVENN---YGSVEATARL  153 (325)
Q Consensus        99 W~~~~~~~~~~~~~~----------------------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~~l  153 (325)
                      |++++..+.......                      ... .....|.|.+++.+|+|.|+|.+.|.   .+.....+.|
T Consensus       170 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          170 WYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASF-SGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             EEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEE-ETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             EEeCCCcccccccCcceeEeccCCCCccccCceEeccccc-CCccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence            999988775422110                      000 01247999999999999999999994   4455555554


Q ss_pred             E
Q psy1095         154 E  154 (325)
Q Consensus       154 ~  154 (325)
                      .
T Consensus       249 ~  249 (250)
T 2fbo_J          249 K  249 (250)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=3.6e-16  Score=126.19  Aligned_cols=125  Identities=18%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             CCCCCcccCCCCCCCcccccccccc--------------cccccCCC---------------CeeEecCCceEecCCCeE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI--------------RTRRLTSS---------------PRFYAVPHNKICDLGDTV   83 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~--------------~~~~~~~~---------------p~~~~~~~~~~v~~g~~v   83 (325)
                      .+|.|.+++++|+|.|.|.+.+..+              ..+.+..+               +.+...|....+.+|+++
T Consensus        78 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v  157 (257)
T 1f3r_B           78 VFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRV  157 (257)
T ss_dssp             EEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCE
T ss_pred             EEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCE
Confidence            3789999999999999999977621              11223222               234455667778999999


Q ss_pred             EEEEEEEecCCCeeEEee--CCeeCC------------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          84 RFQCSVTGQPAPWTSWSK--DGKPAT------------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        84 ~l~C~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      +|.|.+.+.|.+.+.|+|  ++..+.            ...++.........+|.|.+++.+|+|.|+|.+.|.......
T Consensus       158 ~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~  237 (257)
T 1f3r_B          158 TLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGA  237 (257)
T ss_dssp             EEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECC
T ss_pred             EEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECC
Confidence            999999888888999999  554321            134565544455678999999999999999999986522222


Q ss_pred             EEEEEEEC
Q psy1095         150 TARLEIMD  157 (325)
Q Consensus       150 ~~~l~v~~  157 (325)
                      ...|.|..
T Consensus       238 gt~l~V~~  245 (257)
T 1f3r_B          238 GTKLELKA  245 (257)
T ss_dssp             CCEECCSS
T ss_pred             CEEEEEeC
Confidence            33455543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2.9e-15  Score=105.65  Aligned_cols=94  Identities=27%  Similarity=0.431  Sum_probs=80.4

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      ..+|.|...|....+.+|+++.|.|.+.|.|.+.+.|++++..+.. ..++.....+   +|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEE
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEE
Confidence            3578888888889999999999999999999999999999988864 4455554433   69999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCC
Q psy1095         142 NNYGSVEATARLEIMDPR  159 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~  159 (325)
                      |..|.....+.|.|...+
T Consensus        83 n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             CSSCEEEEECCEEEECCS
T ss_pred             cCCCcEEEEEEEEEEeCC
Confidence            999988888888888763

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.62  E-value=8.4e-16  Score=122.51  Aligned_cols=112  Identities=16%  Similarity=0.151  Sum_probs=82.5

Q ss_pred             CCCCCCcccCCCCCCCcccccccccc----------cccccCCCC------------eeEecCCceEecCCCeEEEEEEE
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAI----------RTRRLTSSP------------RFYAVPHNKICDLGDTVRFQCSV   89 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~----------~~~~~~~~p------------~~~~~~~~~~v~~g~~v~l~C~~   89 (325)
                      ..+|.|++++++|+|.|.|.+.+..+          ..+.+..++            .+...|....+.+|++++|.|.+
T Consensus        72 ~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  151 (238)
T 2p1y_A           72 NFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSY  151 (238)
T ss_dssp             BCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEEC
T ss_pred             eEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEE
Confidence            34689999999999999999987532          112222222            56677788889999999999999


Q ss_pred             EecCCCeeEEeeCCe--e---C---------CCCCcEEEE--ecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          90 TGQPAPWTSWSKDGK--P---A---------TPNARVTIR--EKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        90 ~~~p~~~v~W~~~~~--~---~---------~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+.|.+.+.|+|++.  .   +         ....++.+.  ......+|.|.+++.+|+|.|+|.+.|.
T Consensus       152 ~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          152 ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT  221 (238)
T ss_dssp             CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence            998889999999641  1   0         012344443  2334578999999999999999999987

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.61  E-value=7.3e-17  Score=125.48  Aligned_cols=135  Identities=13%  Similarity=0.129  Sum_probs=88.5

Q ss_pred             eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCcccccccccccccccC----------------------------
Q psy1095          12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLT----------------------------   63 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~----------------------------   63 (325)
                      .++|.+++..+....   ....+|.|.+++.+|+|.|+|.+.+.......+.                            
T Consensus        31 ~i~W~k~g~~l~~~~---~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (204)
T 1sy6_A           31 NITWFKDGKMIGFLT---EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDG  107 (204)
T ss_dssp             EEEEEETTEEEEEEE---SSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEEEEC-------------------------
T ss_pred             EEEEEECCEECCCCC---CCCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEEEEEecccccccccccccccccccccccc
Confidence            457887776654321   2346889999999999999999755332111110                            


Q ss_pred             -----CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC--cEEEEecCCeEEEEEccC-CCCCCeE
Q psy1095          64 -----SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFLEISEV-TLEDAGL  135 (325)
Q Consensus        64 -----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~-~~~d~G~  135 (325)
                           .++.+...| .....+|++++|.|.  +.|.|.++|++++..+....  ......   ...|.|.++ +.+|+|.
T Consensus       108 ~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~---~~~L~I~~v~~~~D~G~  181 (204)
T 1sy6_A          108 SDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSD---EDHLSLKEFSELEQSGY  181 (204)
T ss_dssp             -----------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEE---TTEEEETTCCHHHHCEE
T ss_pred             ccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecC---CCEEEEeeCCccccCEE
Confidence                 022222222 222338999999999  78889999999998875431  121112   246999999 9999999


Q ss_pred             EEEEEEeCCeeE-EEEEEEEE
Q psy1095         136 YTIKVENNYGSV-EATARLEI  155 (325)
Q Consensus       136 Y~C~~~~~~~~~-~~~~~l~v  155 (325)
                      |+|.+.|..+.. ...+.|.+
T Consensus       182 Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          182 YVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             EEEEETTSCGGGSSCEEEEEE
T ss_pred             EEEEeccCCCCceeEEEEEEE
Confidence            999999988742 34444443

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=4e-15  Score=101.64  Aligned_cols=93  Identities=28%  Similarity=0.506  Sum_probs=78.2

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      ..+|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..++.....   .+|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~   82 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ---GTLQIKNLRISDTGTYTCVAT   82 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTT---CCEEEESCCTTTCCEEEEEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCC---CEEEEccCCcccCEEEEEEEE
Confidence            4688999899999999999999999999999999999999988763 334443322   359999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECC
Q psy1095         142 NNYGSVEATARLEIMDP  158 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~  158 (325)
                      |..|.....+.|.|..+
T Consensus        83 n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           83 SSSGETSWSAVLDVTES   99 (100)
T ss_dssp             CSSCCCBCCEEEEEESC
T ss_pred             cCCCCEEEEEEEEEecC
Confidence            99988877888888754

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.61  E-value=1.1e-14  Score=115.09  Aligned_cols=168  Identities=15%  Similarity=0.214  Sum_probs=105.3

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--ee---C---------CCCCcEEEEe--cCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KP---A---------TPNARVTIRE--KEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~  129 (325)
                      +...|..+.+.+|++++|.|.+.+.+  ...+.||+..  ..   +         ....++.+..  ..+..+|.|.+++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   83 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence            45667788899999999999997544  4679999852  11   1         0134666553  3456789999999


Q ss_pred             CCCCeEEEEEEEeCC------e--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEe
Q psy1095         130 LEDAGLYTIKVENNY------G--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF  201 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~------~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~  201 (325)
                      .+|+|.|.|.+.+..      .  .......|.|........+|.+...       . ..+.|.|.+.++.+..+.+.|+
T Consensus        84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~-------~-~~~~L~C~~~g~~P~~i~v~W~  155 (229)
T 1hxm_A           84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVM-------K-NGTNVACLVKEFYPKDIRINLV  155 (229)
T ss_dssp             GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEE-------E-ETTEEEEEEESCBSSCCEEEEE
T ss_pred             HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEc-------C-CCCeEEEEEEEEeCCCEEEEEe
Confidence            999999999998652      1  1122346777653222234443321       1 1348999999876543589999


Q ss_pred             eCCEEeccCCCCceEEEecCCcceeEEEEEeCC-CCCCCCeEEEEEEEeCCC
Q psy1095         202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH-VYPEDEGEFTCRVANELG  252 (325)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~  252 (325)
                      ++ ..+..... ......++       .+.+.. ....|.|.|+|.+.+...
T Consensus       156 ~~-~~~~~~~~-~~~~~~dg-------~y~~~~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          156 SS-KKITEFDP-AIVISPSG-------KYNAVKLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             CS-SEEEECCC-EEEECTTS-------SEEEEEEEEETTTTTCEEEEEETTE
T ss_pred             cC-CEEecCcc-ceEECCCC-------cEEEEECcccCCCCcEEEEEEeCCC
Confidence            99 66653321 11111112       122212 223678899999999764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=1.4e-14  Score=101.43  Aligned_cols=98  Identities=24%  Similarity=0.281  Sum_probs=80.2

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+....++...  ...    ....|.|.+++.+|+|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~--p~i~W~k~~~~~~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~   77 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQP--ITCTWMKFRKQIQESEHMKVE--NSE----NGSKLTILAARQEHCGC   77 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSS--CEEEEEESSSBCCCSSSEEEE--ECS----SEEEEEETTCCTTTCEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCC--CEEEEEECCEECcCCCCEEEE--EcC----CEEEEEECCCChhcCEE
Confidence            3577777777888999999999999999888  899999999888755443322  222    25689999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeCCe
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVKGK  268 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~~~  268 (325)
                      |+|.|.|..|.....+.|.|...+..
T Consensus        78 Y~C~a~N~~g~~~~~~~l~V~~~p~~  103 (114)
T 2cqv_A           78 YTLLVENKLGSRQAQVNLTVVDKPDP  103 (114)
T ss_dssp             EEEEEECSSCEEECCEEEEEECSCSC
T ss_pred             EEEEEEECCCcEEEEEEEEEECCCCC
Confidence            99999999999999999998765544

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.61  E-value=6.7e-16  Score=124.56  Aligned_cols=125  Identities=17%  Similarity=0.130  Sum_probs=91.5

Q ss_pred             CCCCcccCCCCCCCcccccccccc---------cccccCC----------------CCeeEecCCceEecCCCeEEEEEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI---------RTRRLTS----------------SPRFYAVPHNKICDLGDTVRFQCS   88 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~---------~~~~~~~----------------~p~~~~~~~~~~v~~g~~v~l~C~   88 (325)
                      +|.|++++++|+|.|.|.+.+...         ..+.+..                +|.+...|....+.+|++++|.|.
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  161 (256)
T 3umt_A           82 YLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCR  161 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEE
Confidence            489999999999999999977611         1122222                677888888888999999999999


Q ss_pred             EEecCCCeeEEeeCC--eeCC------------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEE
Q psy1095          89 VTGQPAPWTSWSKDG--KPAT------------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATARL  153 (325)
Q Consensus        89 ~~~~p~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l  153 (325)
                      +.+.+.+.+.|+|+.  ....            ...++.........+|.|.+++.+|+|.|+|.+.+..... .....|
T Consensus       162 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L  241 (256)
T 3umt_A          162 ASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKL  241 (256)
T ss_dssp             ESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEE
T ss_pred             EecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEE
Confidence            998888899999842  1111            1246666555667789999999999999999998754322 234556


Q ss_pred             EEECC
Q psy1095         154 EIMDP  158 (325)
Q Consensus       154 ~v~~~  158 (325)
                      .|...
T Consensus       242 ~V~~~  246 (256)
T 3umt_A          242 EIKRA  246 (256)
T ss_dssp             EEC--
T ss_pred             EEECC
Confidence            66543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=2e-14  Score=97.87  Aligned_cols=93  Identities=23%  Similarity=0.357  Sum_probs=76.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............     ....|.|.+++.+|+|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~--p~v~W~k~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y   77 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPD--PECEWYKNGVKIERSDRIYWYWPED-----NVCELVIRDVTGEDSASI   77 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESC--CEEEEEETTEECCCCSSEEEEEEET-----TEEEEEECSCCGGGCEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCC--CEEEEEECCEECCCCCCEEEEEcCC-----CEEEEEECCCCcCCCEEE
Confidence            466666777788999999999999999988  8999999999887655433221122     246899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|..|.....+.|.|.
T Consensus        78 ~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           78 MVKAINIAGETSSHAFLLVQ   97 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCcEEEEEEEEEe
Confidence            99999999999888888874

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.61  E-value=1.4e-15  Score=121.94  Aligned_cols=124  Identities=14%  Similarity=0.143  Sum_probs=90.3

Q ss_pred             CCCCCcccCCCCCCCccccccccccc-------ccccC---------------CCCeeEecCCceEecCCCeEEEEEEEE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIR-------TRRLT---------------SSPRFYAVPHNKICDLGDTVRFQCSVT   90 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~-------~~~~~---------------~~p~~~~~~~~~~v~~g~~v~l~C~~~   90 (325)
                      .+|.|.+++++|+|.|.|.+.+....       .+.+.               .++.+...|....+.+|++++|.|.+.
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  160 (247)
T 2ghw_B           81 LYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRAS  160 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEES
T ss_pred             EEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeC
Confidence            36899999999999999999776111       22222               245566677778899999999999999


Q ss_pred             ecCCCeeEEee--CCeeC------------CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEEEE
Q psy1095          91 GQPAPWTSWSK--DGKPA------------TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATARLEI  155 (325)
Q Consensus        91 ~~p~~~v~W~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v  155 (325)
                      +.|.+.+.|+|  ++..+            ....++.........+|.|.+++.+|+|.|+|.+.+..... .....|.|
T Consensus       161 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V  240 (247)
T 2ghw_B          161 QSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEV  240 (247)
T ss_dssp             SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEE
Confidence            98888999999  55433            11345655555566789999999999999999998754322 22344555


Q ss_pred             E
Q psy1095         156 M  156 (325)
Q Consensus       156 ~  156 (325)
                      .
T Consensus       241 ~  241 (247)
T 2ghw_B          241 K  241 (247)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.61  E-value=8e-16  Score=120.52  Aligned_cols=124  Identities=12%  Similarity=0.041  Sum_probs=88.6

Q ss_pred             CCCCCCcccCCCCCCCccccccccccccc------cc-CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRTR------RL-TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK  104 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~------~~-~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~  104 (325)
                      ..+|.|.+++.+|+|.|.|.+.+......      .+ ..++.....+....+..|+.+.+.|.+.+.|.|.++|++++.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~  157 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVK  157 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSC
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCc
Confidence            35789999999999999999865433221      11 133344455556678889999999999999999999999987


Q ss_pred             eCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095         105 PATPNARVTIREK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus       105 ~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      .+........... .....|.|.++..+|.|.|+|.+.|..+.....+.+.|
T Consensus       158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          158 GTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            6643322211100 11346999999999999999999999886655554444

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.60  E-value=2.8e-14  Score=132.12  Aligned_cols=285  Identities=16%  Similarity=0.181  Sum_probs=169.5

Q ss_pred             eeecccCCCCcccCCC----CC---CCCCCCCCcccCCCCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEE
Q psy1095          12 SVKLTRPSGLMSGHST----PR---STPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVR   84 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~~----~~---~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~   84 (325)
                      .+.|.+++........    ..   ....++.++.+...|.|.|.|.....  .......+|.+. .+....+.+|+++.
T Consensus       107 ~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~--~~~~~~~~p~~~-~~~~~~v~~G~~v~  183 (731)
T 2v5y_A          107 NPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKV--LGHPCTRTPHFL-RIQNVEVNAGQFAT  183 (731)
T ss_dssp             SEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEE--ESSCCSSSCEEC-CCCCEEEETTSCEE
T ss_pred             ceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEe--eecccccccccc-cccceEEeCCCcEE
Confidence            5677777765432111    00   12223456666667777776643321  112334677776 56678899999999


Q ss_pred             EEEEEEecCCCeeE-Ee--eCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee-EEEEEEEEEECCCc
Q psy1095          85 FQCSVTGQPAPWTS-WS--KDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRA  160 (325)
Q Consensus        85 l~C~~~~~p~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~  160 (325)
                      |.|.+.|.|.|.+. |+  +++..+.......+.......+|.|.++...|.|.|+|.+.|..|. ......|.|...|.
T Consensus       184 l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~  263 (731)
T 2v5y_A          184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV  263 (731)
T ss_dssp             EEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCC
T ss_pred             EEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCC
Confidence            99999999999887 88  6776654322111111122467999999999999999999999987 66667788887765


Q ss_pred             ccCCCeeeecCcCeeEecCCcEEEEEEEEec---CC-CCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         161 IISRPKVLNGLENLRCCDGDSVTFECQVQVV---PP-NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       161 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~---~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ...+|.+.       ......+.|.|.....   .+ ....+.|...+..      ........      ...+.|.++.
T Consensus       264 ~~~~p~~~-------~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~------~~~~~~~~------~~~~~i~~L~  324 (731)
T 2v5y_A          264 PIAPPQLA-------SVGATYLWIQLNANSINGDGPIVAREVEYCTASGS------WNDRQPVD------STSYKIGHLD  324 (731)
T ss_dssp             BSSCCEEE-------EECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS------CEEEEECC------SSEEEECSCC
T ss_pred             CCCCccee-------ccCCceEEEEeCCcccCCCCccEEEEEEEEECCCC------ceEEeccC------cceEEEeCCC
Confidence            44444432       1234578888865321   11 1125666554211      11111111      1478899999


Q ss_pred             CCCCeEEEEEEE--eCCCcEEe----------------------------EEEEEEEeeCCeecCCC--CceEEE-----
Q psy1095         237 PEDEGEFTCRVA--NELGEVVT----------------------------SACLIVDVVKGKDLTSD--GRLNII-----  279 (325)
Q Consensus       237 ~~d~G~Y~C~~~--~~~~~~~~----------------------------~~~l~v~~~~~~~~~~~--~~~~~~-----  279 (325)
                      ..+...|+|.|.  |..|....                            ++.|.|.. +.......  -.+.+.     
T Consensus       325 p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~-p~~~~~~~~~~~y~v~y~~~~  403 (731)
T 2v5y_A          325 PDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEP-FGYNVTRCHSYNLTVHYCYQV  403 (731)
T ss_dssp             TTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEEC-CCHHHHCSSSCEEEEEEEEES
T ss_pred             CCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEEC-CCcccccceeeeEEEEEEEcc
Confidence            988888889998  87775432                            12222211 11000000  001110     


Q ss_pred             -------------EeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEe
Q psy1095         280 -------------TVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       280 -------------~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  320 (325)
                                   .......+.|.++.+.....|+..|.|..|... +..+.++
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~  456 (731)
T 2v5y_A          404 GGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQ  456 (731)
T ss_dssp             SSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEE
T ss_pred             CCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEE
Confidence                         012234678889998888899999999999864 4444443

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=4e-15  Score=103.53  Aligned_cols=97  Identities=30%  Similarity=0.509  Sum_probs=83.3

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      ..+|.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+......... ..++..+|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            36889999999999999999999999999999999999999988766554433 33445689999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCC
Q psy1095         142 NNYGSVEATARLEIMDPR  159 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~  159 (325)
                      |..|.....+.|.|...+
T Consensus        87 n~~g~~~~~~~l~V~~~p  104 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAKE  104 (110)
T ss_dssp             CSSCEEEECCEEEEECCC
T ss_pred             CCCCEEEEEEEEEEeCCC
Confidence            999988888889988764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.60  E-value=3.4e-15  Score=99.50  Aligned_cols=78  Identities=15%  Similarity=0.238  Sum_probs=66.0

Q ss_pred             CCeeEecCCceE--ecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          65 SPRFYAVPHNKI--CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        65 ~p~~~~~~~~~~--v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ||.|..++.+..  +.+|+++.|.|.+.+ |.+.++|+|+|.++..+.++.+...+....|.|.+++.+|+|.|+|.+.|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            555655555543  568999999999865 88889999999999988888888888888999999999999999999855


Q ss_pred             C
Q psy1095         143 N  143 (325)
Q Consensus       143 ~  143 (325)
                      .
T Consensus        83 ~   83 (91)
T 2lvc_A           83 E   83 (91)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.60  E-value=7.2e-15  Score=99.28  Aligned_cols=87  Identities=17%  Similarity=0.279  Sum_probs=75.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .||.+...|....+.+|+++.|.|.+.+.| +.+.|++++..+....++.+.    ...|.|.+++..|+|.|+|.+.|.
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~   82 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GEEVEVRDSIPADSGLYACVTSSP   82 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEEET
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CCEEEECCCChHHCEEEEEEeccC
Confidence            567787788888999999999999999987 799999999988877666554    246999999999999999999999


Q ss_pred             CeeEEEEEEEEE
Q psy1095         144 YGSVEATARLEI  155 (325)
Q Consensus       144 ~~~~~~~~~l~v  155 (325)
                      .|.....+.|.|
T Consensus        83 ~g~~~~~~~l~V   94 (95)
T 2ckn_A           83 SGSDTTYFSVNV   94 (95)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            998877777765

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.60  E-value=1.3e-15  Score=120.70  Aligned_cols=111  Identities=9%  Similarity=0.056  Sum_probs=81.8

Q ss_pred             CCCCCcccCCCCCCCccccccccc-ccc-----cccC---CCCeeEecCCceEecCCCeE-EEEEEE-EecCCCeeEEee
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSA-IRT-----RRLT---SSPRFYAVPHNKICDLGDTV-RFQCSV-TGQPAPWTSWSK  101 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~-~~~-----~~~~---~~p~~~~~~~~~~v~~g~~v-~l~C~~-~~~p~~~v~W~~  101 (325)
                      .+|.|.+++.+|+|.|+|.+.+.. ...     ..+.   ..|.+...+....+.+|+.+ .|.|.+ .+.|.|.+.|++
T Consensus        77 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~  156 (231)
T 2pet_A           77 GRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR  156 (231)
T ss_dssp             CCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE
T ss_pred             ceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEE
Confidence            459999999999999999987765 211     1222   23566666666778899988 999999 889999999999


Q ss_pred             CCeeCCCCC----cEEEEec-----CC----eEEEEEccCCCCCCeEEEEEEEeC
Q psy1095         102 DGKPATPNA----RVTIREK-----ED----LRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus       102 ~~~~~~~~~----~~~~~~~-----~~----~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      ++..+....    ++.+...     .+    ...|.|.....+|.|.|+|.+.|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          157 NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             TTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            999887654    4333321     11    145777766666799999999983

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.59  E-value=4.5e-15  Score=97.30  Aligned_cols=81  Identities=17%  Similarity=0.307  Sum_probs=68.3

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      ...+.+.+|+++.|.|.+.+ |.|.++|+|++.++..+.++.+...+....|.|.+++.+|+|.|+|.+.|.    ...+
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~----~~~a   77 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD----SRIF   77 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT----CEEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE----EEEE
Confidence            34567889999999999865 888999999999999988998888888889999999999999999998543    3455


Q ss_pred             EEEEEC
Q psy1095         152 RLEIMD  157 (325)
Q Consensus       152 ~l~v~~  157 (325)
                      .|.|..
T Consensus        78 ~l~V~e   83 (84)
T 2lu7_A           78 LVSVEE   83 (84)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            666643

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.59  E-value=1.1e-14  Score=114.50  Aligned_cols=149  Identities=17%  Similarity=0.178  Sum_probs=87.4

Q ss_pred             CeeEecCCcEEEEEEEEecCCCC-CeeEEeeCCEEeccC--C------------CCceEEE---ecCCcceeEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPND-HDISWFRNNRLIKLD--S------------DMKPEVQ---VDSKENLVIARLKIPH  234 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~-~~~~W~~~~~~~~~~--~------------~~~~~~~---~~~~~~~~~~~l~i~~  234 (325)
                      .+.+..|+.++|.|.+.+.+++. ..+.|+|++..+...  .            .......   .........+.|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            45678899999999998766521 248999976443210  0            0000000   0001111345799999


Q ss_pred             CCCCCCeEEEEEEEeCCCcEEeEE-EEEEEeeCCeec-------C-----------------------CCCceEE-----
Q psy1095         235 VYPEDEGEFTCRVANELGEVVTSA-CLIVDVVKGKDL-------T-----------------------SDGRLNI-----  278 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~~~~~~~-~l~v~~~~~~~~-------~-----------------------~~~~~~~-----  278 (325)
                      ++.+|+|.|+|.+.+..+...... .+.+...+....       .                       .++....     
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~  169 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQE  169 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEE
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcce
Confidence            999999999999998776544332 222211111000       0                       0100000     


Q ss_pred             -EEeCC----EEEEEEcCCCCCCCeEEEEEEECCCeeEEe--EEEEEEec
Q psy1095         279 -ITVGG----TSVLTIEDITGDDSGKYQVHVSNQHGSDSC--YASVAVEG  321 (325)
Q Consensus       279 -~~~~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~--~~~l~V~~  321 (325)
                       ...++    .+.|.|..+..+|+|.|+|.|.|+.|....  ++.|.|.+
T Consensus       170 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          170 PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence             00111    236999999999999999999999887544  45555544

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.59  E-value=2.2e-14  Score=97.86  Aligned_cols=94  Identities=26%  Similarity=0.383  Sum_probs=76.0

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............     ....|.|.+++.+|+|.|
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y   77 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPA--PDVSWYLNGRTVQSDDLHKMIVSEK-----GLHSLIFEVVRASDAGAY   77 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESC--CEEEEEETTEEECCCSSSCEEEETT-----TEEEEEESSCCGGGCEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCC--CEEEEEECCEECcCCCcEEEEEcCC-----CeEEEEECCCCcccCEEE
Confidence            355666666778999999999999999988  8999999999887665443332222     235899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEe
Q psy1095         244 TCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      +|.|.|..|.....+.|.|..
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           78 ACVAKNRAGEATFTVQLDVLA   98 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEEEEEEe
Confidence            999999999988888888753

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.59  E-value=2.3e-15  Score=116.69  Aligned_cols=118  Identities=15%  Similarity=0.217  Sum_probs=80.3

Q ss_pred             CCCCCCCcccCCCCCCCcccccccccccc----------cccCCC---CeeEecCCceEecCCCeEEEEEEEE-ecCCCe
Q psy1095          31 TPRSTPPRSISPLSSRTFTPYSLNSAIRT----------RRLTSS---PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPW   96 (325)
Q Consensus        31 ~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~----------~~~~~~---p~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~   96 (325)
                      ...+|.|.+++++|+|.|+|.+.+..+..          +.+..+   |.+....    ...|+.+.|.|.+. +.|.|.
T Consensus        63 ~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~----~~~g~~~~l~C~~~~g~P~p~  138 (201)
T 1dr9_A           63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE----IPTSNIRRIICSTSGGFPEPH  138 (201)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEE----CSSTTEEEEEEEEEEESSCEE
T ss_pred             CCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEecc----CCCCCeEEEEEecCCccCCCE
Confidence            34679999999999999999998743221          112222   3333221    24588999999995 899999


Q ss_pred             eEEeeCCeeCCCCCcEEEEecC-CeEEE-EEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095          97 TSWSKDGKPATPNARVTIREKE-DLRFL-EISEVTLEDAGLYTIKVENNYGSVEATAR  152 (325)
Q Consensus        97 v~W~~~~~~~~~~~~~~~~~~~-~~~~l-~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  152 (325)
                      ++|++++..+............ +...+ .+..+...|.|.|+|.+.|..+...+.+.
T Consensus       139 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          139 LSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             EEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             EEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            9999999888754332222222 32222 33455678999999999999887665544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.59  E-value=1.1e-14  Score=116.14  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=95.7

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+.. .+.+|+.|+|.|.+.+ +.  ..+.|+|++..+.......       ........|.|.+++.+|+|.
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~--~~~~w~k~g~~~~~~~~~~-------~~~~~~~~L~I~~v~~~DsG~   74 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GA--VEYQLHFEGSLFAVDRPKP-------PERINKVKFYIPDMNSRMAGQ   74 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TC--CEEEEEETTEEEEEECCSS-------CTTCCEEEEEECSCCGGGCEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CC--cEEEEEECCCccccccccc-------cCCcceeEEEecCCCcccCeE
Confidence            45777766655 7899999999999853 23  6899999998764211000       001134689999999999999


Q ss_pred             EEEEEEeCCCc--EEeEEEEEEEee---------CCeecCCCCce-------------EE-----------EEeCCEEEE
Q psy1095         243 FTCRVANELGE--VVTSACLIVDVV---------KGKDLTSDGRL-------------NI-----------ITVGGTSVL  287 (325)
Q Consensus       243 Y~C~~~~~~~~--~~~~~~l~v~~~---------~~~~~~~~~~~-------------~~-----------~~~~~~~~l  287 (325)
                      |+|.+.+..+.  .+..+.|.|...         +...+..+..+             ..           ........|
T Consensus        75 Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~l  154 (242)
T 1p6f_A           75 YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEF  154 (242)
T ss_dssp             EEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCSEEEEEECSSSCEEEEEECSSEEEE
T ss_pred             EEEEEecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCCCEEEEEECCCccCccccCCCceEEE
Confidence            99999875432  233445555321         11111111111             11           112334679


Q ss_pred             EEcCCCCCCCeEEEEEEECCC---eeEEeEEEEEEecc
Q psy1095         288 TIEDITGDDSGKYQVHVSNQH---GSDSCYASVAVEGR  322 (325)
Q Consensus       288 ~i~~v~~~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~  322 (325)
                      .|.+++.+|+|.|+|.|.|..   ...+..+.|.|.+.
T Consensus       155 ~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          155 PLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             EEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             EeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            999999999999999999864   23445688888864

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.59  E-value=4.3e-16  Score=121.99  Aligned_cols=119  Identities=14%  Similarity=0.234  Sum_probs=86.5

Q ss_pred             CCCCCcccCCCCCCCcccccccccc--------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CC-CeeE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI--------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PA-PWTS   98 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~--------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~v~   98 (325)
                      .+|.|.+++++|+|.|.|.+.+...        ..+.+.    .+|.+...+....+.+|+.++|.|.+.+. |. +.+.
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  149 (213)
T 3mj8_L           70 ATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVT  149 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEE
Confidence            4588999999999999999987654        112222    57777777766666689999999999885 44 4999


Q ss_pred             EeeCCeeCCCCCcE--EEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          99 WSKDGKPATPNARV--TIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        99 W~~~~~~~~~~~~~--~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      |++++..+......  .....+   ....|.|.++..+|.|.|+|.+.|..+.....+
T Consensus       150 W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          150 WEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             EEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             EEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            99999988643110  001111   123488999999999999999999887655443

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.2e-14  Score=99.82  Aligned_cols=92  Identities=22%  Similarity=0.372  Sum_probs=79.7

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..||.+...+....+.+|+++.|.|.+.+ |.+.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            46788888888999999999999999987 77889999999999888888888777778899999999999999999987


Q ss_pred             CCeeEEEEEEEEEECCC
Q psy1095         143 NYGSVEATARLEIMDPR  159 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~  159 (325)
                          ....+.|.|...+
T Consensus        85 ----~~~~~~l~V~~~p   97 (103)
T 2edf_A           85 ----SKSTASLHVEEKA   97 (103)
T ss_dssp             ----CEEEEEEEECCCS
T ss_pred             ----CCcEEEEEEeCCC
Confidence                3556777887653

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.58  E-value=2.8e-15  Score=120.86  Aligned_cols=111  Identities=17%  Similarity=0.177  Sum_probs=84.9

Q ss_pred             CCCCcccCCCCCCCcccccccc------------c---c--cccccCC---------------CCeeEecCCceEecCCC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNS------------A---I--RTRRLTS---------------SPRFYAVPHNKICDLGD   81 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~------------~---~--~~~~~~~---------------~p~~~~~~~~~~v~~g~   81 (325)
                      +|.|++++++|+|.|.|.+.+.            .   .  ..+.+..               +|.+...|....+.+|+
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            5899999999999999999875            0   1  1122222               56777888888999999


Q ss_pred             eEEEEEEEEecCC-CeeEEeeC--CeeCC------------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          82 TVRFQCSVTGQPA-PWTSWSKD--GKPAT------------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        82 ~v~l~C~~~~~p~-~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      +++|.|.+.+.+. +.+.|+|.  +....            ...++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus       166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            9999999988775 89999983  22211            2346666555667789999999999999999998754

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.58  E-value=1.7e-15  Score=122.18  Aligned_cols=124  Identities=19%  Similarity=0.206  Sum_probs=88.6

Q ss_pred             CCCCcccCCCCCCCccccccccc-------c--cccccCC--------------CCeeEecCCceEecCCCeEEEEEEEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSA-------I--RTRRLTS--------------SPRFYAVPHNKICDLGDTVRFQCSVT   90 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~-------~--~~~~~~~--------------~p~~~~~~~~~~v~~g~~v~l~C~~~   90 (325)
                      +|.|.+++++|+|.|.|.+.+..       .  ..+.+..              +|.+...|....+.+|++++|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  166 (257)
T 3gkz_A           87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSAS  166 (257)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEES
T ss_pred             EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEc
Confidence            68999999999999999997751       1  1122222              36677777788899999999999998


Q ss_pred             ecCCC-eeEEeeC--CeeCC------------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEEE
Q psy1095          91 GQPAP-WTSWSKD--GKPAT------------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATARLE  154 (325)
Q Consensus        91 ~~p~~-~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~  154 (325)
                      +.+.+ .+.|+|+  +....            ...++.........+|.|.+++.+|+|.|+|.+.+..... .....|.
T Consensus       167 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~  246 (257)
T 3gkz_A          167 SSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLE  246 (257)
T ss_dssp             SCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEE
T ss_pred             cCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEE
Confidence            87777 8999984  22211            1245555555566789999999999999999997643321 2234455


Q ss_pred             EEC
Q psy1095         155 IMD  157 (325)
Q Consensus       155 v~~  157 (325)
                      |..
T Consensus       247 v~~  249 (257)
T 3gkz_A          247 IKR  249 (257)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            544

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.58  E-value=6.2e-15  Score=102.21  Aligned_cols=96  Identities=24%  Similarity=0.440  Sum_probs=71.6

Q ss_pred             ccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        61 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      .+..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+....+......  ...|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a   83 (108)
T 3kvq_A            6 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG--NRNLTIRRVRKEDEGLYTCQA   83 (108)
T ss_dssp             -----CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETT--TTEEEECSCCGGGCEEEEEEE
T ss_pred             CccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCC--CcEEEEeecCcccCEEEEEEE
Confidence            344688888888889999999999999999999999999999998877666555432  357999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEECC
Q psy1095         141 ENNYGSVEATARLEIMDP  158 (325)
Q Consensus       141 ~~~~~~~~~~~~l~v~~~  158 (325)
                      .|..|.....+.|.|...
T Consensus        84 ~n~~g~~~~~~~l~V~~~  101 (108)
T 3kvq_A           84 CSVLGCAKVEAFFIIEGA  101 (108)
T ss_dssp             C----CEEEEEEEEEEC-
T ss_pred             EeCCCceEEEEEEEEeCC
Confidence            999998888888888875

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.58  E-value=3.4e-14  Score=99.66  Aligned_cols=82  Identities=24%  Similarity=0.280  Sum_probs=69.5

Q ss_pred             CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecC-------CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE-------DLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      .+..+.|.|.+.|.|.|.|+|+|+|.++....+.......       ....|.|.+++..|+|.|+|.|.|..|...+.+
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            6788999999999999999999999999877665433211       246799999999999999999999999998888


Q ss_pred             EEEEECCCc
Q psy1095         152 RLEIMDPRA  160 (325)
Q Consensus       152 ~l~v~~~~~  160 (325)
                      .|.|...|.
T Consensus        94 ~l~v~~~P~  102 (126)
T 1he7_A           94 MAAFMDNPF  102 (126)
T ss_dssp             EECCCSCTT
T ss_pred             EEEEEcCCC
Confidence            888887654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.58  E-value=3.6e-14  Score=97.40  Aligned_cols=92  Identities=23%  Similarity=0.340  Sum_probs=76.5

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.........  ..+    ....|.|.+++.+|+|.|
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~--p~i~W~k~~~~~~~~~~~~~~--~~~----~~~~L~i~~~~~~D~G~Y   79 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPT--AEVKWYHNGVELQESSKIHYT--NTS----GVLTLEILDCHTDDSGTY   79 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESC--CEEEEEETTEECCCCSSEEEE--EET----TEEEEEECSCCGGGCEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCC--CEEEEEECCEECCCCCCEEEE--ECC----CEEEEEEcCCCcccCEEE
Confidence            466666777788999999999999999998  899999999988766543332  222    346899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|..|.....+.|.|.
T Consensus        80 ~C~a~N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           80 RAVCTNYKGEASDYATLDVT   99 (103)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCcEEEEEEEEEE
Confidence            99999999999888888874

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.58  E-value=3.5e-14  Score=96.85  Aligned_cols=90  Identities=22%  Similarity=0.368  Sum_probs=77.6

Q ss_pred             CCCeeEecCCc-eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHN-KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.|...+.+ ..+.+|+++.|.|.+. .|.+.+.|++++..+....++.+...+....|.|.+++.+|+|.|+|.+  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            57888888776 5788999999999998 6889999999999998888888887777788999999999999999999  


Q ss_pred             CCeeEEEEEEEEEECC
Q psy1095         143 NYGSVEATARLEIMDP  158 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~  158 (325)
                        +.....+.|.|..+
T Consensus        83 --g~~~~~~~l~V~~~   96 (100)
T 2yuv_A           83 --GDEKCSTELFVRSG   96 (100)
T ss_dssp             --TTEEEEEEEEECCS
T ss_pred             --CCceEEEEEEEecC
Confidence              44566777888765

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.57  E-value=3.1e-14  Score=99.90  Aligned_cols=101  Identities=27%  Similarity=0.468  Sum_probs=79.5

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.|...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+..... +......+.   ....|.|.+++.+|+|.
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~--p~v~W~k~~~~~~~~~~-~~~~~~~~~---~~~~L~I~~v~~~D~G~   87 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPP--PKLFWKRNNEMVQFNTD-RISLYQDNT---GRVTLLIKDVNKKDAGW   87 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSC--CEEEEEETTEECCCCBT-TEEEEECTT---CEEEEEEEEECGGGCEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCC--CEEEEEECCEECcCCCC-eEEEEeCCC---CeEEEEECCCCcccCEE
Confidence            4577777788889999999999999999888  89999999988865322 111112210   24589999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeCCee
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVKGKD  269 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~~~~  269 (325)
                      |+|.|.|..|.....+.|.|...+...
T Consensus        88 Y~C~a~N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           88 YTVSAVNEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECCSCCC
T ss_pred             EEEEEEcCCCeEEEEEEEEEeCCCCCC
Confidence            999999999999888899887665543

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.57  E-value=5.5e-14  Score=95.69  Aligned_cols=93  Identities=27%  Similarity=0.396  Sum_probs=74.3

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+...... ......+    ....|.|.+++.+|+|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~--p~v~W~k~~~~~~~~~~~-~~~~~~~----~~~~L~i~~~~~~D~G~Y   77 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPK--PVVSWLRNRQPVRPDQRR-FAEEAEG----GLCRLRILAAERGDAGFY   77 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESC--CEEEEEETTEECCCBTTE-EEEECGG----GEEEEEESSCCGGGCEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCC--CEEEEEECCEECCCCCCE-EEEECCC----CEEEEEEccCCcCCCEEE
Confidence            356666666778999999999999999998  899999999988654332 2211222    345899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|..|.....+.|.|.
T Consensus        78 ~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           78 TCKAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCceeEEEEEEEE
Confidence            99999999998888888774

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=2.7e-14  Score=98.01  Aligned_cols=89  Identities=21%  Similarity=0.321  Sum_probs=75.0

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC--cEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      |+.|...+.+..+.+|++++|.|.+.+ |.+.+.|+|++..+....  ++.+...+....|.|.+++.+|+|.|+|.+.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            445777788889999999999999977 668999999999998777  66777777778899999999999999999976


Q ss_pred             CCeeEEEEEEEEEECC
Q psy1095         143 NYGSVEATARLEIMDP  158 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~  158 (325)
                          ....+.|.|...
T Consensus        86 ----~~~~~~l~V~~~   97 (103)
T 1x44_A           86 ----GQSSAKLSVDLK   97 (103)
T ss_dssp             ----EEEEEEEEEECC
T ss_pred             ----CcEEEEEEEeCC
Confidence                455677777765

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.56  E-value=1.3e-13  Score=111.01  Aligned_cols=81  Identities=14%  Similarity=0.203  Sum_probs=55.4

Q ss_pred             eeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EE---ec----------cCCCCceEEEecCCcceeEEEE
Q psy1095         166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RL---IK----------LDSDMKPEVQVDSKENLVIARL  230 (325)
Q Consensus       166 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~---~~----------~~~~~~~~~~~~~~~~~~~~~l  230 (325)
                      .+...+....+.+|+.++|.|.+.+.+.  +.+.|++..  ..   +.          ...++.......    .....|
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~--~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~sL   78 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSAT--PYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKS----DSSFHL   78 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSC--CEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETT----TTEEEE
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCC--ceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCC----CCEEEE
Confidence            4445555678899999999999998876  899999832  11   10          011111110111    135689


Q ss_pred             EeCCCCCCCCeEEEEEEEeCCC
Q psy1095         231 KIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       231 ~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      .|.+++.+|+|.|.|.+.+..+
T Consensus        79 ~I~~v~~~DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           79 RKASVHRSDSAVYFCAVSAKGT  100 (256)
T ss_dssp             EESSCCGGGCSEEEEEEECTTC
T ss_pred             EECCCCcccCEEEEEEEecCCC
Confidence            9999999999999999998754

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=99.84  Aligned_cols=92  Identities=17%  Similarity=0.257  Sum_probs=77.6

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCC-CeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPA-PWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.|...+.+..+.+|++++|.|.+.+.|. +.+.|+|++..+....++.+...+...+|.|.+++.+|+|.|+|.+.+
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence            4567778888899999999999999988764 479999999999888888887777778999999999999999998843


Q ss_pred             CCeeEEEEEEEEEECCC
Q psy1095         143 NYGSVEATARLEIMDPR  159 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~  159 (325)
                          ....+.|.|..+|
T Consensus        87 ----~~~~a~L~V~~~p   99 (104)
T 2eny_A           87 ----LTSKASLIVRERS   99 (104)
T ss_dssp             ----EEEEECEEEECCC
T ss_pred             ----eeEEEEEEEeCCC
Confidence                4567778887754

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.56  E-value=6.5e-15  Score=120.48  Aligned_cols=124  Identities=19%  Similarity=0.220  Sum_probs=90.1

Q ss_pred             CCCCCcccCCCCCCCcccccccccc---c-------ccccCC---------------CCeeEecCCceEecCCCeEEEEE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI---R-------TRRLTS---------------SPRFYAVPHNKICDLGDTVRFQC   87 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~---~-------~~~~~~---------------~p~~~~~~~~~~v~~g~~v~l~C   87 (325)
                      .+|.|.+++++|+|.|.|.+.+..+   .       ...+..               ++.+...|....+.+|++++|.|
T Consensus       105 ~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C  184 (282)
T 1qok_A          105 AYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITC  184 (282)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEE
T ss_pred             EEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEE
Confidence            4689999999999999999977642   0       122222               34566677778899999999999


Q ss_pred             EEEecCCCeeEEee--CCeeCC------------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe-eEEEEEE
Q psy1095          88 SVTGQPAPWTSWSK--DGKPAT------------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG-SVEATAR  152 (325)
Q Consensus        88 ~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~  152 (325)
                      .+.+.+ +.+.|+|  ++..+.            ...++.........+|.|.+++.+|+|.|+|.+.+... .......
T Consensus       185 ~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~  263 (282)
T 1qok_A          185 SASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTK  263 (282)
T ss_dssp             EESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             EecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEE
Confidence            999888 8999999  554331            13466655455667899999999999999999986432 2223445


Q ss_pred             EEEEC
Q psy1095         153 LEIMD  157 (325)
Q Consensus       153 l~v~~  157 (325)
                      |.|..
T Consensus       264 l~V~~  268 (282)
T 1qok_A          264 LELKR  268 (282)
T ss_dssp             EEEC-
T ss_pred             EEEec
Confidence            55543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.56  E-value=7.9e-14  Score=94.90  Aligned_cols=92  Identities=23%  Similarity=0.377  Sum_probs=75.7

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+....++...  ..+    ....|.|.+++.+|+|.|
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~--p~v~W~~~g~~~~~~~~~~~~--~~~----~~~~L~i~~~~~~d~G~Y   77 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPR--PTAIWTKDGKAITQGGKYKLS--EDK----GGFFLEIHKTDTSDSGLY   77 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESC--CEEEEEETTEECCSSSSEEEE--EET----TEEEEEECSCCGGGCEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCC--CEEEEEECCEECcCCCCEEEE--EeC----CEEEEEECCCCcccCEEE
Confidence            456666667788999999999999999988  899999999988765544332  222    346899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|..|.....+.|.|.
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           78 TCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCcEeEEEEEEEE
Confidence            99999999998888888774

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.55  E-value=3.8e-14  Score=95.67  Aligned_cols=88  Identities=17%  Similarity=0.329  Sum_probs=74.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      ..|.|...|....+.+|+++.|.|.+ +.|.+.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.+   
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   82 (95)
T 2k1m_A            7 PVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA---   82 (95)
T ss_dssp             CCCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE---
T ss_pred             CCCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE---
Confidence            45677777888899999999999999 78888999999999998777888877777788999999999999999999   


Q ss_pred             CeeEEEEEEEEEE
Q psy1095         144 YGSVEATARLEIM  156 (325)
Q Consensus       144 ~~~~~~~~~l~v~  156 (325)
                       +.....+.|.|.
T Consensus        83 -g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 -GSSKVKFDLKVI   94 (95)
T ss_dssp             -TTEEEEEEEEEE
T ss_pred             -CCceEEEEEEEe
Confidence             334455666654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=1.1e-14  Score=102.28  Aligned_cols=92  Identities=17%  Similarity=0.230  Sum_probs=73.3

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEec---CCCeeEEeeCCeeC---CCCCcEEEEec--C----CeEEEEEccCCCCCC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQ---PAPWTSWSKDGKPA---TPNARVTIREK--E----DLRFLEISEVTLEDA  133 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~---p~~~v~W~~~~~~~---~~~~~~~~~~~--~----~~~~l~i~~~~~~d~  133 (325)
                      |.|+..|.+..+.+|++++|.|.+.+.   |.|.|.|||+....   ....++.+...  .    ....|.|.+++..|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            567788889999999999999999874   89999999964211   11334444321  1    146799999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095         134 GLYTIKVENNYGSVEATARLEIMD  157 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~~  157 (325)
                      |.|+|++.|..+...+.+.|.|..
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999999999988

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.55  E-value=1.6e-15  Score=118.62  Aligned_cols=119  Identities=13%  Similarity=0.200  Sum_probs=86.1

Q ss_pred             CCCCCcccCCCCCCCcccccccccc-------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec--CCCeeEE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI-------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ--PAPWTSW   99 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~-------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W   99 (325)
                      .+|.|++++++|+|.|.|.+.+...       ..+.+.    .+|.+...+....+.+|+.++|.|.+.+.  |.+.+.|
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W  147 (211)
T 3tv3_L           68 ASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAW  147 (211)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEE
Confidence            3688999999999999999987543       112233    57777777765555689999999999884  3578999


Q ss_pred             eeCCeeCCCCCcE--EEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095         100 SKDGKPATPNARV--TIREKED----LRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus       100 ~~~~~~~~~~~~~--~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      ++++..+......  .....++    ...|.|.++..+|.|.|+|.+.|..+...+.+
T Consensus       148 ~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          148 KADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             EETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             EECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            9999987642110  0111111    14588999988999999999999887555443

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.55  E-value=4.7e-14  Score=97.65  Aligned_cols=93  Identities=17%  Similarity=0.235  Sum_probs=72.7

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCC---CeeEEeeCCeeCC---CCCcEEEEe---c---CCeEEEEEccCCCC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPA---PWTSWSKDGKPAT---PNARVTIRE---K---EDLRFLEISEVTLE  131 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~---~~v~W~~~~~~~~---~~~~~~~~~---~---~~~~~l~i~~~~~~  131 (325)
                      ..|.|+..|....+.+|++++|.|.+.|.|.   |.|.|+|++....   ...++.+..   .   .....|.|.+++..
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            3577888888899999999999999999888   9999999863211   122444321   1   12467999999999


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095         132 DAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus       132 d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      |+|.|+|.+.|..|...+.+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999998888888875

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.55  E-value=1.7e-15  Score=118.38  Aligned_cols=112  Identities=14%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             CCCCcccCCCCCCCccccccccccc------ccccC---CCCeeEecCCceEecCCCeEEEEEEEEe-cCCC-eeEEeeC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRLT---SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP-WTSWSKD  102 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~---~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~~~  102 (325)
                      +|.|.+++++|+|.|.|.+.+....      ...+.   .+|.+...+....+.+|+.++|.|.+.+ .|.+ .+.|+++
T Consensus        71 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~  150 (210)
T 1lk3_L           71 TLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKID  150 (210)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeC
Confidence            7899999999999999999875431      12222   3677776555444558999999999987 4554 8999999


Q ss_pred             CeeCCCCCcE--EEEe-cCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095         103 GKPATPNARV--TIRE-KED----LRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus       103 ~~~~~~~~~~--~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +..+......  .... .++    ...|.|.++..+|+|.|+|.+.|...
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          151 GTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS  200 (210)
T ss_dssp             TEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             CccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence            9988654111  1111 111    13689999999999999999998765

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.55  E-value=1.3e-14  Score=100.26  Aligned_cols=92  Identities=22%  Similarity=0.403  Sum_probs=78.2

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..+|.|...+.+..+.+|+++.|.|.+.+.|.+ +.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            357889999999999999999999999988877 9999999999888888887777778899999999999999999998


Q ss_pred             CCeeEEEEEEEEEEC
Q psy1095         143 NYGSVEATARLEIMD  157 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~  157 (325)
                      .  .....+.|.|..
T Consensus        85 ~--~~~~~~~l~V~~   97 (106)
T 2dlt_A           85 Y--ALSLSAKLNFLE   97 (106)
T ss_dssp             S--CCCCCBCEEEEC
T ss_pred             C--CceEEEEEEEEE
Confidence            7  333445555553

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.55  E-value=5.8e-14  Score=96.21  Aligned_cols=93  Identities=18%  Similarity=0.234  Sum_probs=72.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEE--EecC---CeEEEEEccCCCCCCeEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI--REKE---DLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~---~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      .||.+.....   ...++.+.|.|.+.|.|.|.++|++++..+....+...  ...+   ....|.|.+++.+|+|.|+|
T Consensus         3 ~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   79 (103)
T 1wwb_X            3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL   79 (103)
T ss_dssp             CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             CCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEE
Confidence            4666542222   34588899999999999999999999999887655322  1111   13459999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEECCC
Q psy1095         139 KVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      .+.|..|.....+.|.|...|
T Consensus        80 ~A~N~~G~~~~~~~l~V~~~P  100 (103)
T 1wwb_X           80 IAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEECSSCEEEEEEEECCSCCC
T ss_pred             EEEeCCCcEeEEEEEEECCCC
Confidence            999999999988888887653

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.55  E-value=4.3e-15  Score=115.24  Aligned_cols=129  Identities=12%  Similarity=0.086  Sum_probs=86.0

Q ss_pred             eeecccCCCCcccCC-----CCCCCCCCCCCcccCCCCCCCcccccccccc--------c--ccccC---CCCeeEecCC
Q psy1095          12 SVKLTRPSGLMSGHS-----TPRSTPRSTPPRSISPLSSRTFTPYSLNSAI--------R--TRRLT---SSPRFYAVPH   73 (325)
Q Consensus        12 ~~~~~~~~~~~~~~~-----~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~--------~--~~~~~---~~p~~~~~~~   73 (325)
                      ...|.+++..+....     ........|.|.+++.+|+|.|+|.+.+...        .  ...+.   .+|.+...|.
T Consensus        37 ~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~  116 (201)
T 1nkr_A           37 HFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG  116 (201)
T ss_dssp             EEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC
T ss_pred             EEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC
Confidence            456766665443211     1112335788999999999999999864311        0  11221   4577777665


Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecC-CeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE-DLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                       ..+.+|++++|.|.+.+ +.+.+.|+|++..+...........+ ....|.|.+++  |+|.|+|.+.+..
T Consensus       117 -~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          117 -PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             -SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             -CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence             46899999999999875 56789999999876532211111111 24579999998  9999999998653

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=2.4e-14  Score=98.45  Aligned_cols=91  Identities=19%  Similarity=0.375  Sum_probs=76.5

Q ss_pred             CCCeeEecCCc---eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          64 SSPRFYAVPHN---KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        64 ~~p~~~~~~~~---~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      .+|.+...|..   ..+.+|++++|.|.+.+.|.+ +.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.+
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            46777777776   789999999999999998888 99999999998877888777777788999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEECCC
Q psy1095         141 ENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       141 ~~~~~~~~~~~~l~v~~~~  159 (325)
                      .|..+    .+.|.|..++
T Consensus        85 ~n~~~----~~~l~V~~~P   99 (104)
T 2e6p_A           85 EGVSA----FFGVTVQDPS   99 (104)
T ss_dssp             SSCCC----CEEEEEECCC
T ss_pred             CCceE----EEEEEEcCCC
Confidence            87633    4566776653

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.1e-13  Score=96.63  Aligned_cols=95  Identities=20%  Similarity=0.402  Sum_probs=77.1

Q ss_pred             ccCCCCeeEecCCc---eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095          61 RLTSSPRFYAVPHN---KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        61 ~~~~~p~~~~~~~~---~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      .+..||.+...|..   ..+.+|+++.|.|.+. .|.+.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+
T Consensus         6 ~v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T 2cpc_A            6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYL   84 (113)
T ss_dssp             CCCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEE
T ss_pred             ccccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEE
Confidence            34456666666654   5688999999999995 7888999999999998877888777666778999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEECCCc
Q psy1095         138 IKVENNYGSVEATARLEIMDPRA  160 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v~~~~~  160 (325)
                      |.+.|    ....+.|.|...|.
T Consensus        85 C~a~n----~~~~~~l~V~~~p~  103 (113)
T 2cpc_A           85 CEIDD----ESASFTVTVTEPPV  103 (113)
T ss_dssp             EESSS----CEEEEEEEEECCCC
T ss_pred             EEEec----CcEEEEEEEecCCc
Confidence            99977    34567788877643

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.7e-13  Score=94.41  Aligned_cols=93  Identities=19%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             cCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC----------cEEEEecCCeEEEEEccCCCC
Q psy1095          62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----------RVTIREKEDLRFLEISEVTLE  131 (325)
Q Consensus        62 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~  131 (325)
                      ...+|.|...+.+..+.+|+++.|.|.+.+  .|.+.|+|||.++..+.          ++.+..++..+.|.|.+++.+
T Consensus         5 ~~p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~   82 (112)
T 2e6q_A            5 SSGTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ   82 (112)
T ss_dssp             CCSCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCST
T ss_pred             ccCCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHH
Confidence            345678999999999999999999999986  67899999999998877          888877777889999999999


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEECCC
Q psy1095         132 DAGLYTIKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       132 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      |+|.|+|..-+   ....++.|.|...|
T Consensus        83 D~G~Y~~~~~~---~~~ssA~L~V~~~p  107 (112)
T 2e6q_A           83 DSGALVGFSCP---GVQDSAALTIQESS  107 (112)
T ss_dssp             TCSEEEEEEET---TEEEEEEEEEECSS
T ss_pred             HCccEEEEEEC---CeeEEEEEEEeCCC
Confidence            99999885433   23457788888764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.55  E-value=1e-15  Score=119.84  Aligned_cols=113  Identities=13%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             CCCCcccCCCCCCCccccccccccc------ccccC---CCCeeEecCCceEecCCCeEEEEEEEEe-cCCC-eeEEeeC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRLT---SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP-WTSWSKD  102 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~---~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~~~  102 (325)
                      +|.|.+++++|+|.|+|.+.+....      ...+.   .+|.+...+......+|+.++|.|.+.+ .|.+ .++|+++
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~  151 (213)
T 3d9a_L           72 TLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID  151 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcC
Confidence            7899999999999999999876432      12222   2677776555444557999999999987 6665 8999999


Q ss_pred             CeeCCCCCcEEE--Ee-cCC----eEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095         103 GKPATPNARVTI--RE-KED----LRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus       103 ~~~~~~~~~~~~--~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      +..+........  .. .++    ...|.|.++..+|.|.|+|.+.|....
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          152 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             TEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            998865411111  11 111    237999999999999999999997654

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.54  E-value=2.7e-13  Score=102.88  Aligned_cols=171  Identities=12%  Similarity=0.124  Sum_probs=112.6

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      +..+.+.|....+.+|+++.|+|.+.. +.+ .+.|...-.      +...........+.+.+++ +|.+.|.|.+...
T Consensus         2 ~f~v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~------~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~   73 (196)
T 3bn3_B            2 PFWADLQPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLR------RNGTQRGLRWLARQLVDIR-EPETQPVCFFRCA   73 (196)
T ss_dssp             CSCEEEESSEEEEETTEEEEEEEEECC-SSCSEEEEECSSE------EEEEEEETTEEEEEEEEEC-SSEECCEEEEEET
T ss_pred             CcEEEEcCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEccC------CeeEccccCceEEEEEEEc-cCCCceEEEEECC
Confidence            345667788888999999999999864 444 577753211      1111111223348888998 7888799998776


Q ss_pred             CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCCceEEEecCC
Q psy1095         144 YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMKPEVQVDSK  222 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~  222 (325)
                      .....+.+.|.|+..|..   +.+  .+....+.+|+.++|.|.+.+..|. ...+.|++++..+.......    ....
T Consensus        74 ~~~~~~~v~l~Vy~~P~~---v~i--~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~----~~~~  144 (196)
T 3bn3_B           74 RRTLQARGLIRTFQRPDR---VEL--MPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAG----EPPR  144 (196)
T ss_dssp             TEEEEEECEEEEEBCCCC---CEE--CCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTT----SCTT
T ss_pred             CCceEEEEEEEEecCCCc---CEE--ccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecccccc----cccc
Confidence            667788899999887432   332  2233348899999999999875553 23489999998875322100    0000


Q ss_pred             cceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         223 ENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       223 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      .......+.+...+.+|...|+|.|.+..+
T Consensus       145 ~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          145 ARGAVLTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             CCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             ccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence            001235677766666666699999998765

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.54  E-value=3e-14  Score=95.80  Aligned_cols=89  Identities=21%  Similarity=0.358  Sum_probs=70.7

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG  241 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  241 (325)
                      +|.+...+....+..|+.+.|.|.+.|.|.  +.+.|++++  ..+...  ....  ...    ....|.|.+++.+|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~--p~i~W~k~~~~~~~~~~--~~~~--~~~----~~~~L~i~~~~~~D~G   71 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPD--PTATWTVGDSGAALAPE--LLVD--AKS----STTSIFFPSAKRADSG   71 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSS--CEEEEECSTTTCBCSTT--SEEE--EET----TEEEEECTTBCGGGCE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCC--CEEEEEECCCCcccCCc--EEEE--ecC----CEEEEEECCCChhcCE
Confidence            355655556678899999999999999998  899999999  766433  1111  111    3468999999999999


Q ss_pred             EEEEEEEeCCCcEEeEEEEEE
Q psy1095         242 EFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       242 ~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      .|+|.|.|..|.....+.|.|
T Consensus        72 ~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           72 NYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCeEEEEEEEEE
Confidence            999999999998888887776

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.54  E-value=1.6e-13  Score=95.86  Aligned_cols=90  Identities=21%  Similarity=0.266  Sum_probs=77.2

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .||.+...+....+.+|+++.|.|.+.+.  |.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.+   
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   92 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC---   92 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE---
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe---
Confidence            45688888888899999999999999764  6899999999998888888887777788999999999999999999   


Q ss_pred             CeeEEEEEEEEEECCC
Q psy1095         144 YGSVEATARLEIMDPR  159 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~  159 (325)
                       +.....+.|.|...|
T Consensus        93 -~~~~~~~~l~V~~~p  107 (113)
T 2edh_A           93 -GKERTSAMLTVRAMP  107 (113)
T ss_dssp             -TTEEEEEEEEECCCC
T ss_pred             -CCCCEEEEEEEeCCC
Confidence             455667788887653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.54  E-value=2.5e-15  Score=118.00  Aligned_cols=118  Identities=16%  Similarity=0.267  Sum_probs=81.0

Q ss_pred             CCCCCcccCCCCCCCcccccccccc----------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEe-cCCC-e
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI----------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP-W   96 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~----------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~   96 (325)
                      .+|.|.+++++|+|.|.|.+.+..+          ..+.+.    .+|.+...+....+..|+.++|.|.+.+ .|.+ .
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~  154 (218)
T 3s96_B           75 RYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVT  154 (218)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeE
Confidence            3589999999999999999977653          112222    5677766555555567899999999988 5766 8


Q ss_pred             eEEeeCCeeCCCCCcE-E-EEecCC---eEEEEEccCCCCCCeEEEEEEEeCCeeEEEE
Q psy1095          97 TSWSKDGKPATPNARV-T-IREKED---LRFLEISEVTLEDAGLYTIKVENNYGSVEAT  150 (325)
Q Consensus        97 v~W~~~~~~~~~~~~~-~-~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  150 (325)
                      +.|++++..+...... . ....+.   ...|.|.....+|.|.|+|.+.|..+.....
T Consensus       155 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          155 VAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             EEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             EEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            9999999988652111 0 111111   1237788888889999999999988755443

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=4.8e-14  Score=98.04  Aligned_cols=99  Identities=25%  Similarity=0.383  Sum_probs=77.3

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............+    ....|.|.+++.+|+|.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~--p~v~W~k~g~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~   80 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPK--PKIYWFKDGKQISPKSDHYTIQRDLD----GTCSLHTTASTLDDDGN   80 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSC--CEEEEECSSCBCCTTCSSEEEEECTT----CEEEEEESSCCTTTCSC
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCC--CEEEEEECCEECCCCCCeEEEEECCC----cEEEEEECCCChhhCEE
Confidence            4567777777788999999999999998887  89999999988765332211111111    23589999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeCC
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~~  267 (325)
                      |+|.|.|..|.....+.|.|...+.
T Consensus        81 Y~C~a~N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           81 YTIMAANPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             CEEEEECTTCCEEECCCEEEECCSC
T ss_pred             EEEEEEECCCeEEEEEEEEEECCCC
Confidence            9999999999998888888865544

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=8.5e-15  Score=100.17  Aligned_cols=90  Identities=20%  Similarity=0.300  Sum_probs=74.7

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC----cEEEEecCCeEEEEEccCCCCCCeEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----RVTIREKEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      ..||.|...+.+..+.+|+++.|.|.+.+.| +.+.|+|++..+....    ++.+...+....|.|.+++.+|+|.|+|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A            6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             CCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEE
T ss_pred             cCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEE
Confidence            3567888888889999999999999999888 8999999999987766    6677777777889999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEEC
Q psy1095         139 KVENNYGSVEATARLEIMD  157 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~  157 (325)
                      .+.|    ....+.|.|..
T Consensus        85 ~a~n----~~~~~~l~V~~   99 (101)
T 2edk_A           85 ITNG----GQCEAELIVEE   99 (101)
T ss_dssp             ECSS----CEECCBEEEEC
T ss_pred             EEcC----CcEEEEEEEeC
Confidence            9976    23344566654

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=100.80  Aligned_cols=94  Identities=17%  Similarity=0.303  Sum_probs=77.1

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .++.+...+.+..+.+|+++.|.|.+.+.|.|.+.|+|++..+....++.+. ..+....|.|.+++.+|+|.|+|.+  
T Consensus        12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~--   89 (115)
T 2cr6_A           12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA--   89 (115)
T ss_dssp             SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE--
T ss_pred             CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE--
Confidence            3457888888899999999999999999999999999999998877666554 3355567999999999999999994  


Q ss_pred             CCeeEEEEEEEEEECCCcc
Q psy1095         143 NYGSVEATARLEIMDPRAI  161 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~~~~  161 (325)
                        +.....+.|.|...+.+
T Consensus        90 --g~~~~~~~L~V~~~p~~  106 (115)
T 2cr6_A           90 --GDQRASAALRVTEKPSV  106 (115)
T ss_dssp             --TTEECCEEEEEECCSSC
T ss_pred             --CCeeEEEEEEEECCCce
Confidence              45566778888876543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.53  E-value=5.8e-15  Score=115.46  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             CCCCcccCCCCCCCccccccccccc------cccc----CCCCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeEEee
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRL----TSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTSWSK  101 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~----~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W~~  101 (325)
                      +|.|.+++++|+|.|.|.+.+....      ...+    ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++
T Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  153 (212)
T 1q0x_L           74 ALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKV  153 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEE
Confidence            7899999999999999999775431      1222    256777665554445679999999999885 443 899999


Q ss_pred             CCeeCCCCCcEE--EEecCC----eEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095         102 DGKPATPNARVT--IREKED----LRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus       102 ~~~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      ++..+.......  ....++    ...|.|..+..+|.|.|+|.+.|.......
T Consensus       154 ~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (212)
T 1q0x_L          154 DGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK  207 (212)
T ss_dssp             TTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence            999886542110  111111    235889999899999999999998765433

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.53  E-value=1.3e-14  Score=119.16  Aligned_cols=126  Identities=17%  Similarity=0.151  Sum_probs=88.8

Q ss_pred             CCCCCcccCCCCCCCccccccccc----c------cccccCC----------------CCeeEecCCceEecCCCeEEEE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSA----I------RTRRLTS----------------SPRFYAVPHNKICDLGDTVRFQ   86 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~----~------~~~~~~~----------------~p~~~~~~~~~~v~~g~~v~l~   86 (325)
                      .+|.|.+++++|+|.|.|.+.+..    .      ..+.+..                ++.+...|....+.+|++++|.
T Consensus       101 ~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~  180 (291)
T 2gki_A          101 AYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMS  180 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEE
T ss_pred             EEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEE
Confidence            368999999999999999987763    1      0122223                3445556677789999999999


Q ss_pred             EEEEecCCC------eeEEeeCC--eeCC------------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          87 CSVTGQPAP------WTSWSKDG--KPAT------------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        87 C~~~~~p~~------~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      |.+.+.+.+      .+.|+|+.  ....            ...++.........+|.|.+++.+|+|.|+|.+.+....
T Consensus       181 C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~  260 (291)
T 2gki_A          181 CKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMY  260 (291)
T ss_dssp             EEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCce
Confidence            999887765      89999963  2110            134565554455678999999999999999999885432


Q ss_pred             E-EEEEEEEEECC
Q psy1095         147 V-EATARLEIMDP  158 (325)
Q Consensus       147 ~-~~~~~l~v~~~  158 (325)
                      . .....|.|...
T Consensus       261 ~fg~gt~l~v~~~  273 (291)
T 2gki_A          261 TFGSGTKLEIKHH  273 (291)
T ss_dssp             EECCCEEEEEECC
T ss_pred             EEcCCEEEEEEee
Confidence            2 22345555544

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.53  E-value=1.9e-14  Score=98.26  Aligned_cols=89  Identities=31%  Similarity=0.548  Sum_probs=70.7

Q ss_pred             CCeeEecC----CceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCc---EEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095          65 SPRFYAVP----HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR---VTIREKEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        65 ~p~~~~~~----~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      ||.+...|    ....+.+|+++.|.|.+.+.|.|.+.|++++..+....+   +...  ....+|.|.+++..|+|.|+
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~   81 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR--NQHWSLIMESVVPSDKGNYT   81 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE--GGGTEEEECSCCGGGCEEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEe--cCeEEEEEccCCcCCCEEEE
Confidence            56665444    356688999999999999999999999999998865432   2222  22346999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEE
Q psy1095         138 IKVENNYGSVEATARLEI  155 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v  155 (325)
                      |.+.|..|.....+.|.|
T Consensus        82 C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           82 CVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEeCCCEEEEEEEEEE
Confidence            999999998887777766

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.53  E-value=2.9e-13  Score=108.75  Aligned_cols=151  Identities=13%  Similarity=0.140  Sum_probs=92.5

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+. ..+.+|+.++|.|.+.+ +.  +.+.|+|++..+.....     ............|.|.+++.+|+|.
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~--~~~~W~k~g~~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~DsG~   76 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RF--QHFLLHREGKFKDTLHL-----IGEHHDGVSKANFSIGPMMQDLAGT   76 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CC--SEEEEEEESTTCEEEEE-----ECBCCTTCEEEEEEECSCCTTTCEE
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CC--cEEEEEECCCCCCccee-----eeeccCCCceEEEEeecCCcccCEE
Confidence            3466665554 67889999999999863 33  78999998864421100     0000001134689999999999999


Q ss_pred             EEEEEEeCCC-----cEEeEEEEEEEeeCCe---------ecCCCCce------------EEEEeC--------------
Q psy1095         243 FTCRVANELG-----EVVTSACLIVDVVKGK---------DLTSDGRL------------NIITVG--------------  282 (325)
Q Consensus       243 Y~C~~~~~~~-----~~~~~~~l~v~~~~~~---------~~~~~~~~------------~~~~~~--------------  282 (325)
                      |+|.+.+...     ..+..+.|.|.....+         .+..++.+            ..+..+              
T Consensus        77 Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~  156 (257)
T 1b6u_A           77 YRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKV  156 (257)
T ss_dssp             EEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCCSEEEEEETTSSCEECCBCBCCS
T ss_pred             EEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCCcEEEEEECCcccCccccccccc
Confidence            9999986432     2234455655422110         11111111            011111              


Q ss_pred             ---CEEEEEEcCCCCCCCeEEEEEEECCCe-----eEEeEEEEEEecccC
Q psy1095         283 ---GTSVLTIEDITGDDSGKYQVHVSNQHG-----SDSCYASVAVEGRKI  324 (325)
Q Consensus       283 ---~~~~l~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~p~  324 (325)
                         ....|.|.+++  |+|.|+|.|.|...     ..+..+.|.|.++|.
T Consensus       157 ~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          157 NGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             SSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             CCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence               14579999998  99999999997632     334458888888763

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3.1e-13  Score=95.12  Aligned_cols=86  Identities=13%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+.+|+.+.|.|.+.|.|.  +.+.|++++..+. ..+....  ..+    ....|.|.+++.+|+|.|+|.|.|..
T Consensus        32 ~~~~v~~G~~~~l~C~~~g~P~--p~i~W~k~g~~l~-~~~~~~~--~~~----~~~~L~i~~~~~~D~G~Y~C~a~N~~  102 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQGKPR--PQVVWTKGGAPLD-TSRVHVR--TSD----FDTVFFVRQAARSDSGEYELSVQIEN  102 (118)
T ss_dssp             SCEEEESSSCEEEEEEEEEESC--CEEEEEETTEECC-CSSCEEE--ECS----SEEEEEESSCCTTTCEEEEEEEECSS
T ss_pred             CCEEEECCCEEEEEEEEccCCC--CEEEEEECCEECC-CCcEEEE--ECC----CeEEEEECCCChhcCEEEEEEEEeCC
Confidence            4567889999999999999998  8999999999886 3333222  222    34679999999999999999999999


Q ss_pred             CcEEeEEEEEEEeeC
Q psy1095         252 GEVVTSACLIVDVVK  266 (325)
Q Consensus       252 ~~~~~~~~l~v~~~~  266 (325)
                      |.....+.|.|...+
T Consensus       103 G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A          103 MKDTATIRIRVVEKA  117 (118)
T ss_dssp             CEECCEEEEEEECCC
T ss_pred             CeEEEEEEEEEEcCC
Confidence            998888888886543

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=4.1e-14  Score=96.36  Aligned_cols=88  Identities=30%  Similarity=0.529  Sum_probs=71.6

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.......    ..     ....|.|.+++.+|+|.|
T Consensus        11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~--p~v~W~~~g~~~~~~~~~~----~~-----~~~~L~i~~v~~~D~G~Y   79 (99)
T 2yr3_A           11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPV--PRITWLLNGQPIQYARSTC----EA-----GVAELHIQDALPEDHGTY   79 (99)
T ss_dssp             EEEEEECCCCEEECTTCCEEEECEEEEESC--CCCEEEESSSBCSSCCCEE----ET-----TEEEEEECSCCTTCCBCE
T ss_pred             CCceeecCCCCEEeCCCeEEEEEEEeeeCC--CeEEEEECCEECcccceEe----eC-----CeEEEEECCCChhhCEEE
Confidence            466666667788999999999999999988  8899999998776443211    11     246899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIV  262 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v  262 (325)
                      +|.|.|..|.....+.|.|
T Consensus        80 ~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           80 TCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             EEEEECSSCEEEEECCEEE
T ss_pred             EEEEEECCCeEEEEEEEEE
Confidence            9999999998887777765

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.52  E-value=8.2e-14  Score=111.67  Aligned_cols=149  Identities=19%  Similarity=0.211  Sum_probs=87.9

Q ss_pred             CeeEecCCcEEEEEEEEecCCC---CCeeEEeeCCEEeccC------CCCceEEEecCC-------cceeEEEEEeCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPN---DHDISWFRNNRLIKLD------SDMKPEVQVDSK-------ENLVIARLKIPHVY  236 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~---~~~~~W~~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~l~i~~~~  236 (325)
                      ...+..|+.+.|.|.+.+.|+.   ...+.|++++......      ...... ...+.       .......|.|.+++
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~sL~I~~v~   90 (248)
T 3pv7_A           12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQE-AFRPGAIVSPWRLKSGDASLRLPGIQ   90 (248)
T ss_dssp             EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEE-ESSTTCBCCHHHHTTTBCCEEESSCC
T ss_pred             CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCccc-ccCCceEEEeccCCCCcEEEEeCCCC
Confidence            4578899999999999988762   1249999863221100      000000 00000       00123469999999


Q ss_pred             CCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecC---------------------CCC-ceEEEEe-------------
Q psy1095         237 PEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLT---------------------SDG-RLNIITV-------------  281 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~---------------------~~~-~~~~~~~-------------  281 (325)
                      .+|+|.|+|.+.+..+.....+.|.|...+...+.                     +.. .+.....             
T Consensus        91 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~  170 (248)
T 3pv7_A           91 LEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISED  170 (248)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTT
T ss_pred             HHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccc
Confidence            99999999999998877777777776432221110                     111 1111111             


Q ss_pred             ----------CC----EEEEEEcCCCCCCCeEEEEEEECCCee--EEeEEEEEEecc
Q psy1095         282 ----------GG----TSVLTIEDITGDDSGKYQVHVSNQHGS--DSCYASVAVEGR  322 (325)
Q Consensus       282 ----------~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~  322 (325)
                                ++    ...|.|.....+|.|.|+|.|.|..+.  ....+.|.|..+
T Consensus       171 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~~p  227 (248)
T 3pv7_A          171 VITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARH  227 (248)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC-----
T ss_pred             eeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEcCC
Confidence                      11    136888888999999999999999986  556677777443

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=2.2e-13  Score=95.57  Aligned_cols=98  Identities=14%  Similarity=0.180  Sum_probs=72.7

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEec---CCCCCeeEEeeCCEEe-cc--CCCCceEEEecCCcceeEEEEEeCCCCCC
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVV---PPNDHDISWFRNNRLI-KL--DSDMKPEVQVDSKENLVIARLKIPHVYPE  238 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~~~~~W~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  238 (325)
                      +.|...+....+.+|+.++|.|.+.+.   |.  +.|.|||+.... ..  ....................|.|.+++.+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~--P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   85 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRK--PTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN   85 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSC--CEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCC--CcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcc
Confidence            556777788899999999999999875   44  899999974211 11  12221111112222234579999999999


Q ss_pred             CCeEEEEEEEeCCCcEEeEEEEEEEe
Q psy1095         239 DEGEFTCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       239 d~G~Y~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      |+|.|+|.|.|..+.....+.|.|..
T Consensus        86 DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           86 FAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999999999999999977

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.52  E-value=1.5e-13  Score=91.90  Aligned_cols=84  Identities=26%  Similarity=0.413  Sum_probs=70.4

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .++.+...|....+.+|+++.|.|.+.|.|.|.+.|++++..+.....         ..|.|.+++.+|+|.|+|.+.|.
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~   72 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYND   72 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECS
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------CeEEECCCCHHhCEEEEEEEEcC
Confidence            357788888888999999999999999999999999999998765432         36999999999999999999998


Q ss_pred             CeeEE-EEEEEEEE
Q psy1095         144 YGSVE-ATARLEIM  156 (325)
Q Consensus       144 ~~~~~-~~~~l~v~  156 (325)
                      .|... ..+.|.|.
T Consensus        73 ~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           73 RDSQDSKKVEIIID   86 (91)
T ss_dssp             SCEEECCCEEEEEC
T ss_pred             CCCEEeeeEEEEEe
Confidence            88544 34556654

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=5.5e-14  Score=97.57  Aligned_cols=95  Identities=21%  Similarity=0.318  Sum_probs=74.1

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEec---CCCeeEEeeCCee-CCC--CCcEEEEec--C----CeEEEEEccCCCC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQ---PAPWTSWSKDGKP-ATP--NARVTIREK--E----DLRFLEISEVTLE  131 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~---p~~~v~W~~~~~~-~~~--~~~~~~~~~--~----~~~~l~i~~~~~~  131 (325)
                      ..+.|+..|.++.+.+|++++|.|.+.+.   |.|.|.|||+... +..  ..++.+...  .    ....|.|.+++..
T Consensus        11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            45567788888999999999999999874   7899999997422 211  234444321  1    1467999999999


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095         132 DAGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       132 d~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      |+|.|+|.+.|..+..++.+.|.|..+
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            999999999999999889999988763

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.52  E-value=4.4e-14  Score=96.94  Aligned_cols=91  Identities=18%  Similarity=0.384  Sum_probs=77.4

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..||.|...+....+.+|+++.|.|.+.+.|.+ +.|++++..+....++.+...+....|.|.+++.+|+|.|+|.   
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2e7b_A            6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS---   81 (103)
T ss_dssp             CCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE---
T ss_pred             CCCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE---
Confidence            357788888888899999999999999998888 9999999999877888888877778899999999999999998   


Q ss_pred             CCeeEEEEEEEEEECC
Q psy1095         143 NYGSVEATARLEIMDP  158 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~  158 (325)
                       .+.....+.|.|...
T Consensus        82 -~g~~~~~~~l~V~~~   96 (103)
T 2e7b_A           82 -FGDQTTSATLTVTAL   96 (103)
T ss_dssp             -CSSCBCCBCEEEECC
T ss_pred             -ECCcEEEEEEEEEec
Confidence             344455667777665

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=94.14  Aligned_cols=92  Identities=24%  Similarity=0.348  Sum_probs=74.4

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+...... ......       ..|.|.+++.+|+|.
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~--p~v~W~~~~~~~~~~~~~-~~~~~~-------~~L~i~~v~~~d~G~   76 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPL--PVISWLKEGFTFPGRDPR-ATIQEQ-------GTLQIKNLRISDTGT   76 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSC--CEEEEEESSSEESSSCSS-CEECTT-------CCEEEESCCTTTCCE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCC--CEEEEEECCEECCCCCCC-EEEcCC-------CEEEEccCCcccCEE
Confidence            4677877777888999999999999999888  889999999887633221 111122       379999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEe
Q psy1095         243 FTCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      |+|.|.|..|.....+.|.|..
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           77 YTCVATSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             EEEEEECSSCCCBCCEEEEEES
T ss_pred             EEEEEEcCCCCEEEEEEEEEec
Confidence            9999999999988888888743

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.52  E-value=1.7e-14  Score=117.85  Aligned_cols=110  Identities=16%  Similarity=0.188  Sum_probs=81.5

Q ss_pred             CCCCcccCCCCCCCccccccccc--------------ccccccCC---------------CCeeEecCCceEecCCCeEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSA--------------IRTRRLTS---------------SPRFYAVPHNKICDLGDTVR   84 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~--------------~~~~~~~~---------------~p~~~~~~~~~~v~~g~~v~   84 (325)
                      +|.|++++++|+|.|.|.+.+..              ...+.+..               ++.+...|. ..+.+|++|+
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~  158 (280)
T 3fku_X           80 YMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTAT  158 (280)
T ss_dssp             EEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEE
T ss_pred             EEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEE
Confidence            68999999999999999997751              11122223               455555555 7899999999


Q ss_pred             EEEEEEe-cC-CCeeEEeeC--CeeCC------------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          85 FQCSVTG-QP-APWTSWSKD--GKPAT------------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        85 l~C~~~~-~p-~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      |.|.+.+ .+ .+.+.|||.  +....            ...++.........+|.|.+++.+|+|.|+|.+.+..
T Consensus       159 L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          159 LTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            9999987 43 478999983  22111            1246666655667789999999999999999998865

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.52  E-value=3.9e-15  Score=116.80  Aligned_cols=113  Identities=14%  Similarity=0.217  Sum_probs=80.3

Q ss_pred             CCCCcccCCCCCCCcccccccccc-------cccccC---CCCeeEecCCceEecCCCeEEEEEEEEe-cCCC-eeEEee
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI-------RTRRLT---SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP-WTSWSK  101 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~-------~~~~~~---~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~~  101 (325)
                      +|.|.+++++|+|.|.|.+.+...       ..+.+.   .+|.+...+......+|+.++|.|.+.+ .|.+ .++|++
T Consensus        73 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  152 (216)
T 2xzc_L           73 TLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKV  152 (216)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEE
Confidence            688999999999999999987643       112222   4677766444333346899999999988 5554 899999


Q ss_pred             CCeeCCCCCcEE--EEe-cCC----eEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095         102 DGKPATPNARVT--IRE-KED----LRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus       102 ~~~~~~~~~~~~--~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      ++..+.......  ... .++    ...|.|..+..+|+|.|+|.+.|....
T Consensus       153 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          153 DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             TTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            999886541111  111 111    126889999999999999999987643

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=6.7e-14  Score=95.24  Aligned_cols=90  Identities=20%  Similarity=0.269  Sum_probs=71.9

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.|...+.+..+.+|+.+.|.|.+  .|.  +.+.|+|+|..+..+.++...  .++    ....|.|.+++.+|+|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~--p~v~W~k~g~~l~~~~r~~i~--~~~----~~~~L~I~~v~~~D~G~Y   76 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SEN--IPGKWTKNGLPVQESDRLKVV--QKG----RIHKLVIANALTEDEGDY   76 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSC--CCEEEEETTEECCCCSSEEEE--ECS----SEEEEEESSCCGGGCSEE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCC--CeEEEEECCEECCCCCcEEEE--EeC----CEEEEEECCCChhhCEEE
Confidence            5677777778899999999999999  566  789999999998766654433  344    346899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEee
Q psy1095         244 TCRVANELGEVVTSACLIVDVV  265 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~~  265 (325)
                      +|.|.|.  ....++.|.|...
T Consensus        77 ~C~a~N~--~~~~~a~L~V~~~   96 (100)
T 2yuz_A           77 VFAPDAY--NVTLPAKVHVISG   96 (100)
T ss_dssp             EEEESSS--CCCEEEEEEEECC
T ss_pred             EEEEcCC--CeeEEEEEEEeCC
Confidence            9999997  4556677777543

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=94.76  Aligned_cols=91  Identities=22%  Similarity=0.265  Sum_probs=77.5

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.|...+....+.+|+++.|.|. .+.|.+.+.|++++..+....++.+...+....|.|.+++.+|+|.|+|.    
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----   81 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----   81 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----
Confidence            5778888888899999999999999 47888999999999999888888887777777899999999999999998    


Q ss_pred             CeeEEEEEEEEEECCC
Q psy1095         144 YGSVEATARLEIMDPR  159 (325)
Q Consensus       144 ~~~~~~~~~l~v~~~~  159 (325)
                      .+.....+.|.|...+
T Consensus        82 ~g~~~~~~~l~V~~~p   97 (103)
T 2dku_A           82 IGQAQSRAQLLVQGRR   97 (103)
T ss_dssp             CSSCBCCEEEEEECSC
T ss_pred             eCCceEEEEEEEeCcc
Confidence            3445556778887653

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.51  E-value=2.8e-13  Score=100.18  Aligned_cols=97  Identities=23%  Similarity=0.551  Sum_probs=77.6

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+....++.......     ....|.|.+++.+|+|.
T Consensus        40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~--p~v~W~k~g~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~  112 (154)
T 1fhg_A           40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPD--PEVMWFKDDNPVKESRHFQIDYDEE-----GNCSLTISEVCGDDDAK  112 (154)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESC--CEEEEEETTEECCCSSSEEEEECTT-----CEEEEEESSCCGGGCEE
T ss_pred             CCCeEEccCCcEEEeCCCeEEEEEEEEEecC--CEEEEEECCEECCCCCcEEEEECCC-----CeEEEEECCCChhcCEE
Confidence            3567777777788999999999999999998  8999999999887654433221111     24689999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeC
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVK  266 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~  266 (325)
                      |+|.|.|..|.....+.|.|...+
T Consensus       113 Y~C~a~N~~G~~~~~~~l~V~~~p  136 (154)
T 1fhg_A          113 YTCKAVNSLGEATCTAELLVETMG  136 (154)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECC-
T ss_pred             EEEEEEECCCeEEEEEEEEEeCcC
Confidence            999999999998888888885443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.51  E-value=8.6e-15  Score=115.37  Aligned_cols=116  Identities=13%  Similarity=0.181  Sum_probs=81.3

Q ss_pred             CCCCCcccCCCCCCCcccccccccc------c----ccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-e
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI------R----TRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-W   96 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~------~----~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~   96 (325)
                      .+|.|++++++|+|.|.|.+.+...      .    ...+.    .+|.+...+....+.+|+.++|.|.+.+. |.| .
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  160 (222)
T 1q9r_B           81 LYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT  160 (222)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCE
T ss_pred             EEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCE
Confidence            3789999999999999999987542      1    12222    35666555444446789999999999985 888 9


Q ss_pred             eEEeeCCeeCCCCCcEEEEecCC---eEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          97 TSWSKDGKPATPNARVTIREKED---LRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        97 v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      +.|++++..+...........+.   ...|.|.++...| |.|+|.+.|..+....
T Consensus       161 v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~  215 (222)
T 1q9r_B          161 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  215 (222)
T ss_dssp             EEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             EEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcE
Confidence            99999987654211111111111   2358898998889 9999999998875443

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.51  E-value=3.7e-13  Score=91.17  Aligned_cols=86  Identities=20%  Similarity=0.420  Sum_probs=70.1

Q ss_pred             ecCcCeeEecCCcEEEEEEEEec-CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVV-PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      ..+....+.+|+.+.|.|.+.+. |.  +.+.|++++..+....+....  ..+    ....|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~~~~~v~~G~~v~l~C~~~g~~p~--~~v~W~~~~~~~~~~~~~~~~--~~~----~~~~L~i~~v~~~D~G~Y~C~a   77 (97)
T 2bk8_A            6 GQIMHAVGEEGGHVKYVCKIENYDQS--TQVTWYFGVRQLENSEKYEIT--YED----GVAILYVKDITKLDDGTYRCKV   77 (97)
T ss_dssp             CCCCCEEECTTCCEEEEEEEESCCTT--CEEEEEETTEECCSSSSEEEE--EET----TEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccCcCEEEcCCCcEEEEEEEeccCCC--CEEEEEECCEECcCCCCEEEE--EcC----CeEEEEEecCChhhCeEEEEEE
Confidence            34456788999999999999987 66  899999999988765544332  222    2468999999999999999999


Q ss_pred             EeCCCcEEeEEEEEE
Q psy1095         248 ANELGEVVTSACLIV  262 (325)
Q Consensus       248 ~~~~~~~~~~~~l~v  262 (325)
                      .|..|.....+.|.|
T Consensus        78 ~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           78 VNDYGEDSSYAELFV   92 (97)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             ECCCCeEeEEEEEEE
Confidence            999999988888877

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.51  E-value=7.1e-16  Score=120.68  Aligned_cols=113  Identities=12%  Similarity=0.188  Sum_probs=80.4

Q ss_pred             CCCCcccCCCCCCCcccccccccc--------ccccc----CCCCeeEecCCceEecCCCeEEEEEEEEec-CC-CeeEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI--------RTRRL----TSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PA-PWTSW   99 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~--------~~~~~----~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~v~W   99 (325)
                      +|.|.+++++|+|.|.|.+.+...        ....+    ..+|.+...+....+.+|+.+.|.|.+.+. |. +.++|
T Consensus        70 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  149 (212)
T 1nfd_E           70 TLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTW  149 (212)
T ss_dssp             EEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEE
T ss_pred             EEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEE
Confidence            688999999999999999984111        11222    256777665554445679999999999886 54 79999


Q ss_pred             eeCCeeCCCCCcEE-EEe-cCC---eEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095         100 SKDGKPATPNARVT-IRE-KED---LRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus       100 ~~~~~~~~~~~~~~-~~~-~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      ++++..+....... ... .++   ...|.|.++..+|+|.|+|.+.|....
T Consensus       150 ~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          150 KANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             EETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             EECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            99998876442210 000 111   134889999999999999999987654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.51  E-value=1.2e-14  Score=116.64  Aligned_cols=109  Identities=16%  Similarity=0.279  Sum_probs=78.4

Q ss_pred             CCCCcccCCCCCCCccccccccccc------ccccCC-------------------CCeeEecCCceEecCCCeEEEEEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRLTS-------------------SPRFYAVPHNKICDLGDTVRFQCS   88 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~~-------------------~p~~~~~~~~~~v~~g~~v~l~C~   88 (325)
                      +|.|++++++|+|.|.|.+.+....      .+.+..                   ++.+...|....+.+|++++|.|.
T Consensus        75 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  154 (250)
T 3esu_F           75 SLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCK  154 (250)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEE
T ss_pred             EEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEE
Confidence            6899999999999999999765321      122222                   234455666778999999999999


Q ss_pred             EEecC--CCeeEEeeC--CeeCC-----------------CCCcEEEEec--CCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          89 VTGQP--APWTSWSKD--GKPAT-----------------PNARVTIREK--EDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        89 ~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      +.+.+  .+.+.|+|+  +..+.                 ...++.+...  ....+|.|.+++.+|+|.|+|.+.+
T Consensus       155 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          155 DSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             CCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            98766  789999987  33221                 0135554432  4456799999999999999999986

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.51  E-value=1.1e-13  Score=105.05  Aligned_cols=141  Identities=16%  Similarity=0.205  Sum_probs=86.3

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEeccC--------CCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIKLD--------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+....|+.|+|.|.......+.+.+.|++  ++..+..-        ...+.....+       +.|.|.+++.+|+|.
T Consensus         8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~n-------gsL~I~~v~~~DsG~   80 (182)
T 1hnf_A            8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN-------GTLKIKHLKTDDQDI   80 (182)
T ss_dssp             EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTT-------SCEEECSCCGGGCEE
T ss_pred             EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCC-------CCEEECCCChhhCEE
Confidence            456778999999994421111126899999  87766210        1111221223       389999999999999


Q ss_pred             EEEEEEeCCCcEE--eEEEEEEEeeCC-eecC-------------CCCceE-EEEeCCE------EEEEEcCCCCCCCeE
Q psy1095         243 FTCRVANELGEVV--TSACLIVDVVKG-KDLT-------------SDGRLN-IITVGGT------SVLTIEDITGDDSGK  299 (325)
Q Consensus       243 Y~C~~~~~~~~~~--~~~~l~v~~~~~-~~~~-------------~~~~~~-~~~~~~~------~~l~i~~v~~~d~G~  299 (325)
                      |+|.+.|..|...  ..+.|.|..... +.+.             .+.... .+..++.      ..|.+. ...+|+|.
T Consensus        81 Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l~~~~~~i~~~-~~~~d~G~  159 (182)
T 1hnf_A           81 YKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHK-WTTSLSAK  159 (182)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEEEEESSCEEEE-CCSCEEEE
T ss_pred             EEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEccCCCCCEEEEEECCEECCCCCcEEEEe-cccCCCcE
Confidence            9999999888754  345566643211 1111             111111 1222221      123332 25789999


Q ss_pred             EEEEEECCCeeEEeEEEEEEec
Q psy1095         300 YQVHVSNQHGSDSCYASVAVEG  321 (325)
Q Consensus       300 Y~C~a~n~~g~~~~~~~l~V~~  321 (325)
                      |+|.|.|..|..+....+...+
T Consensus       160 Y~C~a~N~~~~~~s~~~~~c~~  181 (182)
T 1hnf_A          160 FKCTAGNKVSKESSVEPVSCPE  181 (182)
T ss_dssp             EEEEEECSSCEEEEEEEEEECC
T ss_pred             EEEEEEeCCCCcEEcceecCCC
Confidence            9999999999998887775443

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.51  E-value=7.6e-15  Score=114.64  Aligned_cols=114  Identities=13%  Similarity=0.211  Sum_probs=79.8

Q ss_pred             CCCCcccCCCCCCCcccccccccc----cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeEEeeCC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI----RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTSWSKDG  103 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~----~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W~~~~  103 (325)
                      +|.|++++++|+|.|.|.+.+...    ....+.    .+|.+...+....+.+|+.++|.|.+.+. |.| .++|++++
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  158 (210)
T 3d9a_H           79 YLDLNSVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  158 (210)
T ss_dssp             EEEECSCCGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             EEEECCCCcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCC
Confidence            799999999999999999987421    112222    35666655544457789999999999886 888 99999988


Q ss_pred             eeCCCCCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCeeEE
Q psy1095         104 KPATPNARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGSVE  148 (325)
Q Consensus       104 ~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  148 (325)
                      ..+...........+   ....|.|..+..+| |.|+|.+.|..+...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  205 (210)
T 3d9a_H          159 LSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  205 (210)
T ss_dssp             BCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred             cccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            754211100011111   12458888888877 999999999887543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3.1e-14  Score=99.00  Aligned_cols=98  Identities=28%  Similarity=0.439  Sum_probs=78.4

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.......... ..+    ....|.|.+++.+|+|.
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~--p~v~W~~~g~~~~~~~~~~~~~-~~~----~~~~L~i~~v~~~D~G~   80 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPT--PDLSWQLDGKPVRPDSAHKMLV-REN----GVHSLIIEPVTSRDAGI   80 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSC--CEEECBBSSSBCCCCSSEEEEE-CTT----SCEEEEESSCCGGGCSB
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCC--CEEEEEECCEECCCCCceEEEE-ecC----CeEEEEEeeCCcccCEE
Confidence            4577877777888999999999999999888  8999999998776544332221 111    23589999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeCC
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~~  267 (325)
                      |+|.|.|..|.....+.|.|...+.
T Consensus        81 Y~C~a~n~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           81 YTCIATNRAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             BCEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEECCCCEEEEEEEEEEeCCCC
Confidence            9999999999988888888865544

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=1.3e-13  Score=94.60  Aligned_cols=78  Identities=19%  Similarity=0.267  Sum_probs=67.0

Q ss_pred             cCCCCeeEecCCc-eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEE
Q psy1095          62 LTSSPRFYAVPHN-KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        62 ~~~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                      ...+|.|+..+.+ ..+.+|+++.|.|.+ +.|.+.+.|+|++..+... .++.+...+....|.|.+++.+|+|.|+|.
T Consensus        12 ~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   90 (104)
T 1pd6_A           12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV   90 (104)
T ss_dssp             CSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEE
T ss_pred             ccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEE
Confidence            3456777776666 789999999999999 6888899999999998876 677777666677899999999999999999


Q ss_pred             E
Q psy1095         140 V  140 (325)
Q Consensus       140 ~  140 (325)
                      +
T Consensus        91 a   91 (104)
T 1pd6_A           91 V   91 (104)
T ss_dssp             E
T ss_pred             E
Confidence            9

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.50  E-value=2.3e-13  Score=91.17  Aligned_cols=88  Identities=19%  Similarity=0.193  Sum_probs=69.2

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.|...+.+..+.+|+.+.|.|.+.+ ++  +.+.|+++|..+..+.++...  .++    ....|.|.+++.+|+|.
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~--~~v~W~k~g~~i~~~~~~~i~--~~g----~~~~L~I~~v~~~D~G~   74 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PD--VHGQWKLKGQPLAASPDCEII--EDG----KKHILILHNCQLGMTGE   74 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SS--CCCEEEETTEECCCBTTEEEE--EET----TEEEEEECSCCGGGCEE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CC--CeEEEEECCEECcCCCCEEEE--EEC----CEEEEEECCCChhhCEE
Confidence            3577777788889999999999999975 44  679999999998766654433  333    34689999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |+|.|.|.    ..++.|.|.
T Consensus        75 Y~C~a~n~----~~sa~L~V~   91 (93)
T 1waa_A           75 VSFQAANT----KSAANLKVK   91 (93)
T ss_dssp             EEEEETTE----EEEEEEEEE
T ss_pred             EEEEECCC----cEEEEEEEE
Confidence            99999763    456667663

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.50  E-value=1.2e-14  Score=113.79  Aligned_cols=105  Identities=12%  Similarity=0.104  Sum_probs=74.2

Q ss_pred             CCCCCcccCCCCCCCccccccccccc---------ccccCC---CCeeEecCCceEecCCCeEEEEEEEEe----cCCCe
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIR---------TRRLTS---SPRFYAVPHNKICDLGDTVRFQCSVTG----QPAPW   96 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~---------~~~~~~---~p~~~~~~~~~~v~~g~~v~l~C~~~~----~p~~~   96 (325)
                      .+|.|++++++|+|.|.|.+.+....         .+.+..   +|.+.. +.  .+.+|+.++|.|.+.+    .|.|.
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~  158 (214)
T 2zg1_A           82 CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLT  158 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCE
T ss_pred             EEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCce
Confidence            47899999999999999998765411         112222   444433 22  2678999999999976    37889


Q ss_pred             eEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          97 TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        97 v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      ++|++++...... .     ......|.|..+..+|.|.|+|.+.|..+.
T Consensus       159 v~W~~~~~~~~~~-~-----~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          159 FSWTGNALSPLDP-E-----TTRSSELTLTPRPEDHGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             EEEESSTTSSSCS-S-----CCCSSEEEECCCTTCCSCEEEEEEECC---
T ss_pred             EEEeCCCCccCCC-C-----ceeEEEEEEecccHHcCcEEEEEEEeCCCC
Confidence            9999998654322 1     123356999999999999999999997543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.50  E-value=8.3e-15  Score=115.21  Aligned_cols=116  Identities=11%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             CCCCCcccCCCCCCCcccccccccc---------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEe-cCCC-ee
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI---------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP-WT   97 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~---------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~v   97 (325)
                      .+|.|.+++++|+|.|.|.+.+...         ....+.    .+|.+...+....+.+|+.+.|.|.+.+ .|.| .+
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  158 (219)
T 1c1e_H           79 AYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV  158 (219)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEE
Confidence            4799999999999999999987531         112222    2366655544445678999999999998 8988 99


Q ss_pred             EEeeCCeeCCCCCcEEEEecCC---eEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          98 SWSKDGKPATPNARVTIREKED---LRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        98 ~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      +|++++..+...........+.   ...|.|. ....|.|.|+|.+.|..+....
T Consensus       159 ~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~-~~~~d~g~Y~C~a~n~~~~~~~  212 (219)
T 1c1e_H          159 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVP-SSPRPSETVTCNVAHPASSTKV  212 (219)
T ss_dssp             EEGGGTBCTTEEECCCEESSSCEEEEEEEEEE-SSSTTTSCCEEEEEEGGGTEEE
T ss_pred             EEEeCCcccceEecCCcccCCeEEEEEEEEEe-cccCCCCEEEEEEEeCCCCccE
Confidence            9999987642110000011111   1358884 4444669999999998775443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.50  E-value=5.4e-14  Score=110.88  Aligned_cols=118  Identities=11%  Similarity=0.119  Sum_probs=79.6

Q ss_pred             CCCCCcccCCCCCCCcccccccccc-----------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI-----------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-   95 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~-----------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-   95 (325)
                      .+|+|++++++|+|.|.|.+.+..+           ..+.+.    .+|.+...+....+.+|+.++|.|.+.+. |.+ 
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  158 (223)
T 1dee_B           79 LYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSI  158 (223)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCC
T ss_pred             EEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCe
Confidence            3789999999999999999976531           122222    35565543322235789999999999886 777 


Q ss_pred             eeEEee-CCeeCCCCCcEE-EEecCC---eEEEEEccCCC--CCCeEEEEEEEeCCeeEEEE
Q psy1095          96 WTSWSK-DGKPATPNARVT-IREKED---LRFLEISEVTL--EDAGLYTIKVENNYGSVEAT  150 (325)
Q Consensus        96 ~v~W~~-~~~~~~~~~~~~-~~~~~~---~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~  150 (325)
                      .++|++ ++..+.....+. ....+.   ...|.|.....  +|.|.|+|.+.|..+.....
T Consensus       159 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          159 TFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             EEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             EEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            999999 888775400000 001111   23477877766  78999999999988765443

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.50  E-value=3.5e-14  Score=114.40  Aligned_cols=111  Identities=15%  Similarity=0.258  Sum_probs=77.8

Q ss_pred             CCCCcccCCCCCCCcccccccccc--------cccccCCCC--------------------eeEecCCceEecCCCeEEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI--------RTRRLTSSP--------------------RFYAVPHNKICDLGDTVRF   85 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~--------~~~~~~~~p--------------------~~~~~~~~~~v~~g~~v~l   85 (325)
                      +|.|++++++|+|.|.|.+.+...        ..+.+..+|                    .....+....+.+|++++|
T Consensus        75 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L  154 (256)
T 3ux9_B           75 SLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRL  154 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEE
T ss_pred             EEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEE
Confidence            689999999999999999976421        112222222                    1233344556899999999


Q ss_pred             EEEEEecC--CCeeEEeeC--CeeC------C-----------CCCcEEEEec--CCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          86 QCSVTGQP--APWTSWSKD--GKPA------T-----------PNARVTIREK--EDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        86 ~C~~~~~p--~~~v~W~~~--~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .|.+.+.+  .+.+.|+|+  +..+      .           ...++.+...  ....+|.|.+++.+|+|.|+|.+.+
T Consensus       155 ~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  234 (256)
T 3ux9_B          155 SCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYI  234 (256)
T ss_dssp             EEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEc
Confidence            99998866  789999986  2211      1           1125555433  3466799999999999999999988


Q ss_pred             CC
Q psy1095         143 NY  144 (325)
Q Consensus       143 ~~  144 (325)
                      ..
T Consensus       235 ~~  236 (256)
T 3ux9_B          235 DF  236 (256)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.50  E-value=5.4e-14  Score=96.96  Aligned_cols=92  Identities=18%  Similarity=0.416  Sum_probs=75.9

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      ..|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+....+....  ..+    ....|.|.+++.+|+|.
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~--p~v~W~k~g~~l~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~   84 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPV--PTVTWLRKGQVLSTSARHQVT--TTK----YKSTFEISSVQASDEGN   84 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSC--CBCCBCSSSSCCTTCSSEEEE--ECS----SEEEEEECCCCSSCCSE
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCC--CEEEEEECCEECCCCCCEEEE--ECC----CEEEEEECcCCchhCEE
Confidence            4577777788889999999999999999888  899999999887655443322  222    34689999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |+|.|.|..|.....+.|.|
T Consensus        85 Y~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           85 YSVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             EEECCBCSSCBCCEEEEEEE
T ss_pred             EEEEEEeCCCeEEEEEEEEE
Confidence            99999999999888888776

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.50  E-value=9.1e-15  Score=114.42  Aligned_cols=112  Identities=16%  Similarity=0.173  Sum_probs=81.2

Q ss_pred             CCCCcccCCCCCCCcccccccccc------ccccc---CCCCeeEecCCceEecCCCeEEEEEEEEecCC--CeeEEeeC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI------RTRRL---TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPA--PWTSWSKD  102 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~------~~~~~---~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~--~~v~W~~~  102 (325)
                      +|.|.+++++|+|.|.|.+.+...      ....+   ..+|.+...+....+..|+.++|.|.+.+.+.  +.+.|+++
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~  151 (213)
T 3r06_A           72 SFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVD  151 (213)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             EEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEEC
Confidence            789999999999999999976532      12233   46777877776666678999999999988543  48999999


Q ss_pred             CeeCCCCC--cEEEEe-cCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095         103 GKPATPNA--RVTIRE-KED----LRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus       103 ~~~~~~~~--~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +..+....  ...... .++    ...|.|.....+|.|.|+|.+.|...
T Consensus       152 g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          152 GSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             TEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             CcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence            99886531  111111 111    23577888888899999999998764

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.50  E-value=1.4e-13  Score=96.82  Aligned_cols=97  Identities=25%  Similarity=0.461  Sum_probs=71.6

Q ss_pred             ccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC-----cEEEEecCCeEEEEEc--cCCCCCC
Q psy1095          61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-----RVTIREKEDLRFLEIS--EVTLEDA  133 (325)
Q Consensus        61 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~l~i~--~~~~~d~  133 (325)
                      .+..||.+...|....+.+|+++.|.|.+.|.|.|.++|++++..+....     .......+....+.|.  +++.+|+
T Consensus         5 ~~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~   84 (117)
T 2v9t_A            5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE   84 (117)
T ss_dssp             CCCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSC
T ss_pred             cccCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcC
Confidence            44568899998999999999999999999999999999999998886542     2222222322222222  5679999


Q ss_pred             eEEEEEEEeCCeeEEE-EEEEEEEC
Q psy1095         134 GLYTIKVENNYGSVEA-TARLEIMD  157 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~-~~~l~v~~  157 (325)
                      |.|+|.+.|..|.... .+.|.+..
T Consensus        85 G~Y~C~a~N~~G~~~s~~~~l~~~~  109 (117)
T 2v9t_A           85 GVYVCVARNYLGEAVSHDASLEVAA  109 (117)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             EEEEEEEEeCccceEeeeEEEEhhh
Confidence            9999999999997654 45555544

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.50  E-value=1.9e-13  Score=94.62  Aligned_cols=90  Identities=20%  Similarity=0.329  Sum_probs=75.9

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..||.|...+....+.+|++++|.|.+.+.  |.+.|++++..+....++.+...+....|.|.+++.+|+|.|+|.+.+
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   83 (108)
T 2dm7_A            6 SGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ   83 (108)
T ss_dssp             CCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT
T ss_pred             CCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC
Confidence            367888888888899999999999998754  689999999998877888887777778899999999999999999933


Q ss_pred             CCeeEEEEEEEEEECC
Q psy1095         143 NYGSVEATARLEIMDP  158 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~~  158 (325)
                          ....+.|.|...
T Consensus        84 ----~~~~~~l~V~~~   95 (108)
T 2dm7_A           84 ----ERTSATLTVRAL   95 (108)
T ss_dssp             ----EEEEEECEEECC
T ss_pred             ----CEEEEEEEEecC
Confidence                456677777764

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.50  E-value=5.1e-15  Score=117.61  Aligned_cols=114  Identities=12%  Similarity=0.255  Sum_probs=80.9

Q ss_pred             CCCCcccCCCCCCCcccccccccc--------ccccc----CCCCeeEecCCceEecCCCeEEEEEEEEec-CC-CeeEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI--------RTRRL----TSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PA-PWTSW   99 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~--------~~~~~----~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~v~W   99 (325)
                      +|.|.+++++|+|.|.|.+.+...        ....+    ..+|.+...+......+|+.++|.|.+.+. |. +.++|
T Consensus        92 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  171 (234)
T 2j6e_L           92 SLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAW  171 (234)
T ss_dssp             EEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEE
Confidence            688999999999999999987654        11222    145666554444344568999999999885 44 48999


Q ss_pred             eeCCeeCCCCCcEE-E-EecC----CeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095         100 SKDGKPATPNARVT-I-REKE----DLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus       100 ~~~~~~~~~~~~~~-~-~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      ++++..+....... . ...+    ....|.|.++..+|.|.|+|.+.|.....
T Consensus       172 ~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          172 KADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             EETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred             EECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence            99999886541110 0 0011    12468899999999999999999987653

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.49  E-value=1.7e-14  Score=115.28  Aligned_cols=110  Identities=17%  Similarity=0.193  Sum_probs=77.8

Q ss_pred             CCCCCcccCCCCCCCcccccccccc------cccccCCCC-------------eeEecCCceEecCCCeEEEEEEEEecC
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI------RTRRLTSSP-------------RFYAVPHNKICDLGDTVRFQCSVTGQP   93 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~------~~~~~~~~p-------------~~~~~~~~~~v~~g~~v~l~C~~~~~p   93 (325)
                      .+|.|.+++++|+|.|.|.+.+...      ..+.+..+|             .+...+....+.+|++++|.|.+.+.|
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~  150 (242)
T 2znx_A           71 FTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDS  150 (242)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSC
T ss_pred             EEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccc
Confidence            3689999999999999999987532      122333333             234444455689999999999998865


Q ss_pred             --CCeeEEeeCC--eeC-------C---------CCCcEEEEe--cCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          94 --APWTSWSKDG--KPA-------T---------PNARVTIRE--KEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        94 --~~~v~W~~~~--~~~-------~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                        .+.+.|+|++  ..+       .         ...++.+..  .....+|.|.+++.+|+|.|+|.+.+
T Consensus       151 ~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  221 (242)
T 2znx_A          151 ITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXD  221 (242)
T ss_dssp             GGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             cCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccC
Confidence              5789999842  221       0         133555543  23456899999999999999999976

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.49  E-value=8.3e-15  Score=116.56  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=81.9

Q ss_pred             CCCCCcccCCCCCCCcccccccccc------ccccc---CCCCeeEecCCceEecCCCeEEEEEEEEe-cC-CCeeEEee
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI------RTRRL---TSSPRFYAVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSK  101 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~------~~~~~---~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~  101 (325)
                      .+|.|++++++|+|.|.|.+.+...      ....+   ..+|.+...+....+.+|+.++|.|.+.+ .| .+.++|++
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k  173 (237)
T 3sob_L           94 FTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKV  173 (237)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEE
Confidence            4689999999999999999976442      11222   35677766555555557899999999988 55 58999999


Q ss_pred             CCeeCCCCC--cEEEEe-cCC----eEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095         102 DGKPATPNA--RVTIRE-KED----LRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus       102 ~~~~~~~~~--~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      ++..+....  ...... .++    ...|.|.....+|.|.|+|.+.|....
T Consensus       174 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          174 DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             TTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            999886431  000011 111    245888999999999999999997653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.49  E-value=4.7e-14  Score=108.59  Aligned_cols=106  Identities=12%  Similarity=0.095  Sum_probs=73.1

Q ss_pred             CCCCCCcccCCCCCCCcccccccccccc-----cccCCC---CeeEecCCceEecCCC-eEEEEEEEEec-CCCeeEEee
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSS---PRFYAVPHNKICDLGD-TVRFQCSVTGQ-PAPWTSWSK  101 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~---p~~~~~~~~~~v~~g~-~v~l~C~~~~~-p~~~v~W~~  101 (325)
                      ..+|+|++++.+|+|.|.|.+.+.....     +.+..+   |.+...+  .....|. +++|.|.+.+. |.|.+.|++
T Consensus        69 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~  146 (193)
T 2if7_A           69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEA  146 (193)
T ss_dssp             TCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEE
T ss_pred             CeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEe
Confidence            5789999999999999999997765431     222232   3333332  1233465 89999999984 588999999


Q ss_pred             CCeeCCCCCcEEEEecCCeEEEEEccCCCC-CCeEEEEEEEeCCeeEEEE
Q psy1095         102 DGKPATPNARVTIREKEDLRFLEISEVTLE-DAGLYTIKVENNYGSVEAT  150 (325)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~~~~  150 (325)
                      ++..+...           ..|.|.....+ |+|.|+|.+.|..+.....
T Consensus       147 ~g~~l~~~-----------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          147 LGNTLSSQ-----------PNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             TTEEEESS-----------SEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             CCEEcCCC-----------CeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence            98765322           13556544444 8999999999998876443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.49  E-value=4e-14  Score=112.92  Aligned_cols=109  Identities=14%  Similarity=0.241  Sum_probs=80.0

Q ss_pred             CCCCcccCCCCCCCccccccccccc------ccccCC------CCeeEecCCceEecCCCeEEEEEEEEecC--CCeeEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRLTS------SPRFYAVPHNKICDLGDTVRFQCSVTGQP--APWTSW   99 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~~------~p~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W   99 (325)
                      +|.|.+++++|+|.|.|.+.+....      .+.+..      ++.+...|....+.+|++++|.|.+.+.|  .+.+.|
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W  155 (240)
T 1moe_A           76 TLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHW  155 (240)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred             EEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEE
Confidence            6899999999999999999876322      122222      23355567778899999999999999876  468999


Q ss_pred             eeC--CeeCC-----------------CCCcEEEEec--CCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095         100 SKD--GKPAT-----------------PNARVTIREK--EDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus       100 ~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      +|+  +....                 ...++.+...  ....+|.|.+++.+|+|.|+|.+.+
T Consensus       156 ~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          156 VKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            995  22210                 1234554432  4457899999999999999999974

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.49  E-value=3.9e-14  Score=113.48  Aligned_cols=110  Identities=14%  Similarity=0.168  Sum_probs=78.5

Q ss_pred             CCCCcccCCCCCCCccccccccccc------ccccCC-------------CCeeEecCCceEecCCCeEEEEEEEEecC-
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRLTS-------------SPRFYAVPHNKICDLGDTVRFQCSVTGQP-   93 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~~-------------~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-   93 (325)
                      +|.|.+++++|+|.|.|.+.+....      .+.+..             ++.+...+....+.+|++++|.|.+.+.+ 
T Consensus        77 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~  156 (247)
T 1svz_A           77 TLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAF  156 (247)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCG
T ss_pred             EEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCccc
Confidence            6899999999999999999775321      222222             23344444555699999999999998864 


Q ss_pred             -CCeeEEeeCC--eeC------C-----------CCCcEEEEe--cCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          94 -APWTSWSKDG--KPA------T-----------PNARVTIRE--KEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        94 -~~~v~W~~~~--~~~------~-----------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                       .+.+.|+|++  ...      .           ...++.+..  .....+|.|.+++.+|+|.|+|.+.|.
T Consensus       157 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          157 TDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             GGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence             5689999863  111      0           023555443  344578999999999999999999874

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.48  E-value=6e-14  Score=97.17  Aligned_cols=93  Identities=30%  Similarity=0.533  Sum_probs=66.1

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+........  ...+      ..|.|.+++.+|+|.|
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~--~~~~------~~L~i~~v~~~D~G~Y   79 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPP--PQIMWFKDNETLVEDSGIVL--KDGN------RNLTIRRVRKEDEGLY   79 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC------CCEEEEESSSBCCCBTTEEE--ETTT------TEEEECSCCGGGCEEE
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCC--CeEEEEECCeEcccCCCeEE--eCCC------cEEEEeecCcccCEEE
Confidence            366666667788999999999999998887  78999999987765443221  1222      4799999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEeeC
Q psy1095         244 TCRVANELGEVVTSACLIVDVVK  266 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~~~  266 (325)
                      +|.|.|..|.....+.|.|...+
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           80 TCQACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             EEEEC----CEEEEEEEEEEC--
T ss_pred             EEEEEeCCCceEEEEEEEEeCCC
Confidence            99999999999999888885544

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.48  E-value=1.8e-14  Score=113.34  Aligned_cols=115  Identities=12%  Similarity=0.165  Sum_probs=80.5

Q ss_pred             CCCCcccCCCCCCCcccccccccc--------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI--------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTSW   99 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~--------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W   99 (325)
                      +|.|++++++|+|.|.|.+.+...        ....+.    .+|.+...+....+.+|+.++|.|.+.+. |.| .++|
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  161 (220)
T 1pz5_B           82 YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKW  161 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            799999999999999999987531        112222    35666655544456789999999999986 888 9999


Q ss_pred             eeCCeeCC--CCCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095         100 SKDGKPAT--PNARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus       100 ~~~~~~~~--~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      ++++....  ......  ..+   ....|.|.+...+| |.|+|.+.|..+...+.+
T Consensus       162 ~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          162 NYGALSSGVRTVSSVL--QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             GGGTCCTTEEECCCEE--ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             ecCCcccceEEcCCcc--cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            99876311  000000  111   12458898888866 999999999888655544

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.48  E-value=1.3e-12  Score=90.34  Aligned_cols=100  Identities=16%  Similarity=0.220  Sum_probs=71.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCC-CCCeeEEeeCCEEeccC---CCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPP-NDHDISWFRNNRLIKLD---SDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      .|.|...+....+.+|+.++|.|.+.+.|. ..+.+.|+|++......   ...................|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            466677777888999999999999998764 23689999987322111   11111111111112235789999999999


Q ss_pred             CeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         240 EGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|+|.|.|..|.....+.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999999888874

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.48  E-value=2.7e-13  Score=93.78  Aligned_cols=95  Identities=19%  Similarity=0.277  Sum_probs=73.2

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe-eC-------CCCCcEEEEe-cCCeEEEEEccCCCCCC
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK-PA-------TPNARVTIRE-KEDLRFLEISEVTLEDA  133 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~-~~-------~~~~~~~~~~-~~~~~~l~i~~~~~~d~  133 (325)
                      ..+|.+...|....+.+|++++|.|.+.+.|.+.+.|++++. .+       ....++.+.. .....+|.|.+++.+|+
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            456777788889999999999999999998889999998764 11       1233555432 33467899999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095         134 GLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      |.|+|.+.| .+.....+.|.|..+
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L~V~~~  107 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYLTVLGV  107 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEEEEECC
T ss_pred             eEEEEEEEc-CCCcEEEEEEEEEcC
Confidence            999999999 777778888888764

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.48  E-value=1e-12  Score=101.38  Aligned_cols=181  Identities=17%  Similarity=0.257  Sum_probs=107.4

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--Cee----C------C--CCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKP----A------T--PNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~----~------~--~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.+...-...+.||+.  |+.    |      .  -..||.-...+...+|+|.+++.+|.
T Consensus         4 lTQsP~sls~s~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs~lq~eD~   83 (259)
T 4f9l_D            4 LTQSPSSLSASLGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQPEDI   83 (259)
T ss_dssp             EEEECSBCCBCTTCEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EEccCCeEEECCCCCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccCCeEEEEEcccChhhC
Confidence            45668888899999999999875443445899963  321    1      0  12466655556677899999999999


Q ss_pred             eEEEEEEEeCCee-EEEEEEEEEECC---Ccc-------------cCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCC
Q psy1095         134 GLYTIKVENNYGS-VEATARLEIMDP---RAI-------------ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH  196 (325)
Q Consensus       134 G~Y~C~~~~~~~~-~~~~~~l~v~~~---~~~-------------~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~  196 (325)
                      +.|.|...+.... .-.-..|.|...   +..             .....-+.+.....+.+|+.+.|.|.++|+.....
T Consensus        84 A~YyC~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs~y  163 (259)
T 4f9l_D           84 ATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFTRY  163 (259)
T ss_dssp             EEEEEEECSSSSCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCGGGS
T ss_pred             EEEEEeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCcccC
Confidence            9999986533210 000112222110   000             00011122333456889999999999998765446


Q ss_pred             eeEEee--CCEEe------cc-------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095         197 DISWFR--NNRLI------KL-------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       197 ~~~W~~--~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  248 (325)
                      .+.|.|  .|+.+      ..       .+..+.+++...+.......|.+++++.+|.+.|.|...
T Consensus       164 ~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr~  230 (259)
T 4f9l_D          164 YLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSRE  230 (259)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEEe
Confidence            688987  23322      11       111111111111112234679999999999999999654

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=4.3e-13  Score=94.41  Aligned_cols=96  Identities=19%  Similarity=0.300  Sum_probs=74.1

Q ss_pred             ccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecC----CeEEEEEccCCCCCCeEE
Q psy1095          61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE----DLRFLEISEVTLEDAGLY  136 (325)
Q Consensus        61 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y  136 (325)
                      .+..||.+...+...   ..+...|.|.+.|.|.|.+.|+|++..+....+.......    ....|.|.+++..|+|.|
T Consensus         4 ~V~~pP~i~~~~~~~---~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   80 (118)
T 1wwc_A            4 TVYYPPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNY   80 (118)
T ss_dssp             CCCCCCCCCCCCCCC---CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             EEecCCceeccCCCe---eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEE
Confidence            455677765543321   2366789999999999999999999999877655443221    345799999999999999


Q ss_pred             EEEEEeCCeeEEEEEEEEEECCC
Q psy1095         137 TIKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       137 ~C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      +|.+.|..|.....+.|.|...|
T Consensus        81 ~C~a~N~~G~~~~~~~l~v~~~P  103 (118)
T 1wwc_A           81 TLIAKNPLGTANQTINGHFLKEP  103 (118)
T ss_dssp             EEEEEETTEEEEEEEEECCSCCC
T ss_pred             EEEEECCCCeEeeEEEEEEccCC
Confidence            99999999998888888777653

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.5e-13  Score=93.55  Aligned_cols=83  Identities=19%  Similarity=0.342  Sum_probs=69.3

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT  150 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  150 (325)
                      .|....+.+|+.++|.|.+.+.| |.+.|+|++..+....++.+.    ...|.|.+++..|+|.|+|.+.|..+.....
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   83 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDTTY   83 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEEEE
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEEEE
Confidence            35556688999999999998877 799999999988776666554    2479999999999999999999999988777


Q ss_pred             EEEEEECC
Q psy1095         151 ARLEIMDP  158 (325)
Q Consensus       151 ~~l~v~~~  158 (325)
                      +.|.|...
T Consensus        84 ~~l~V~~~   91 (99)
T 2cr3_A           84 FSVNVSDA   91 (99)
T ss_dssp             EEECBCSC
T ss_pred             EEEEEecC
Confidence            77777654

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4e-13  Score=93.18  Aligned_cols=99  Identities=16%  Similarity=0.183  Sum_probs=72.1

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEec---CCCCCeeEEeeCCEE-eccC--CCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVV---PPNDHDISWFRNNRL-IKLD--SDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~~~~~W~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      .+.|...+....+.+|+.++|.|.+.+.   |.  +.|.|+|+... +...  ...................|.|.+++.
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~--P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   89 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDK--PTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL   89 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSC--CCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCC--CcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCCh
Confidence            3556666778899999999999999875   44  89999997422 2111  122211112222223467999999999


Q ss_pred             CCCeEEEEEEEeCCCcEEeEEEEEEEe
Q psy1095         238 EDEGEFTCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       238 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      +|+|.|+|.|.|..|..+..+.|.|..
T Consensus        90 ~D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           90 GDRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             TTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             hhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            999999999999999999899888854

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.47  E-value=2.4e-14  Score=113.20  Aligned_cols=122  Identities=15%  Similarity=0.163  Sum_probs=77.8

Q ss_pred             CCCCCcccCCCCCCCcccccccccc------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeEEe
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTSWS  100 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W~  100 (325)
                      .+|+|++++++|+|.|.|.+.+...      ..+.+.    .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  158 (227)
T 1mju_H           79 AYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWN  158 (227)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEG
T ss_pred             EEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEe
Confidence            4789999999999999999976421      122222    34666544333346789999999999885 776 99999


Q ss_pred             eCCeeCCC--CCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095         101 KDGKPATP--NARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD  157 (325)
Q Consensus       101 ~~~~~~~~--~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  157 (325)
                      +++..+..  .....  ..+   ....|.|..+..+| |.|+|.+.|..........+.+..
T Consensus       159 ~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~  217 (227)
T 1mju_H          159 SGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRG  217 (227)
T ss_dssp             GGTBCTTEEECCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCC
T ss_pred             cCCCcCCcEECCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCC
Confidence            99876421  11111  111   12468898888888 999999999766554444444433

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.47  E-value=7.8e-14  Score=113.70  Aligned_cols=110  Identities=15%  Similarity=0.276  Sum_probs=80.2

Q ss_pred             CCCCcccCCCCCCCccccccccccc------ccccCCC--------------CeeEecCCceEecCCCeEEEEEEEEecC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRLTSS--------------PRFYAVPHNKICDLGDTVRFQCSVTGQP   93 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~~~--------------p~~~~~~~~~~v~~g~~v~l~C~~~~~p   93 (325)
                      +|.|++++++|+|.|.|.+.+....      .+.+..+              +.+...|....+.+|++++|.|.+.+.+
T Consensus        83 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~  162 (276)
T 3auv_A           83 TLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFT  162 (276)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSC
T ss_pred             EEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCcc
Confidence            6899999999999999999875321      1222222              2334556677899999999999998866


Q ss_pred             --CCeeEEeeCC--eeC-----------------CCCCcEEEEec--CCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          94 --APWTSWSKDG--KPA-----------------TPNARVTIREK--EDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        94 --~~~v~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                        .+.+.|+|++  ...                 ....++.+..+  ....+|.|.+++.+|+|.|+|.+.|.
T Consensus       163 ~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          163 ISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             GGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence              5899999963  111                 11245555442  34567999999999999999999987

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.46  E-value=1.1e-12  Score=91.12  Aligned_cols=93  Identities=20%  Similarity=0.352  Sum_probs=71.6

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCCeeCCCCCcEEEEec-C-------CeEEEEEccCCCCC
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDGKPATPNARVTIREK-E-------DLRFLEISEVTLED  132 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~-~-------~~~~l~i~~~~~~d  132 (325)
                      ..+|.+...|....+.+|++++|.|.+.+.|  .+.+.|++++..+........... .       ....|.|.+++.+|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            4688999999989999999999999998654  579999999998865432111111 0       13579999999999


Q ss_pred             CeEEEEEEEeCCeeE-EEEEEEEE
Q psy1095         133 AGLYTIKVENNYGSV-EATARLEI  155 (325)
Q Consensus       133 ~G~Y~C~~~~~~~~~-~~~~~l~v  155 (325)
                      +|.|+|.+.|..|.. ...+.|.|
T Consensus        88 ~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           88 EGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEEEEEEeCCCcEEEeEEEEEe
Confidence            999999999998863 45566655

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.45  E-value=8.2e-14  Score=109.58  Aligned_cols=114  Identities=15%  Similarity=0.163  Sum_probs=79.2

Q ss_pred             CCCCCcccCCCCCCCccccccccccc--------ccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CC--Cee
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAIR--------TRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PA--PWT   97 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~--------~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~--~~v   97 (325)
                      .+|+|++++++|+|.|.|.+.+....        .+.+.    .+|.+...+ ...+.+|+.++|.|.+.+. |.  +.+
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v  157 (220)
T 2fbj_H           79 LYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNV  157 (220)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEE
T ss_pred             EEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEE
Confidence            47899999999999999998764321        12222    356666555 3446789999999999886 76  799


Q ss_pred             EEeeCCeeCCC-CCcEEEEecCC---eEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          98 SWSKDGKPATP-NARVTIREKED---LRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        98 ~W~~~~~~~~~-~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      .|++++..+.. ........++.   ...|.|......|.|.|+|.+.|..+..
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~  211 (220)
T 2fbj_H          158 TWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV  211 (220)
T ss_dssp             EESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence            99999876511 00001111111   1248898888899999999999987654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3.1e-13  Score=95.12  Aligned_cols=95  Identities=20%  Similarity=0.290  Sum_probs=76.0

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+..... ......++       .|.|.+++.+|+|.
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~--p~i~W~k~g~~~~~~~~-~~~~~~~~-------~L~i~~v~~~D~G~   76 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPV--PTILWRKDGVLVSTQDS-RIKQLENG-------VLQIRYAKLGDTGR   76 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSC--CEEEEEESSSBCCTTST-TEEEEETT-------EEEEESCCGGGCCC
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCC--CEEEEEECCEECcCCCC-eEEEccCC-------EEEEccCCcCCCEE
Confidence            4567777777788999999999999998888  89999999988764322 22222333       79999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeCC
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~~  267 (325)
                      |+|.|.|..|.....+.|.|...+.
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           77 YTCIASTPSGEATWSAYIEVQEFGV  101 (118)
T ss_dssp             EEEEEECSSCEEEEECCEEEECCSC
T ss_pred             EEEEEEcCCCcEEEEEEEEEEeCCC
Confidence            9999999999988888888865443

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.45  E-value=4.9e-14  Score=99.92  Aligned_cols=99  Identities=21%  Similarity=0.358  Sum_probs=80.6

Q ss_pred             ccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCC--CCcEEEE--ecCC--eEEEEEccCCCC
Q psy1095          59 TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATP--NARVTIR--EKED--LRFLEISEVTLE  131 (325)
Q Consensus        59 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~--~~~~~~~--~~~~--~~~l~i~~~~~~  131 (325)
                      .+.+..+|.|.. +....+.+|+.+.|.|.+.+.|.|. +.|++++..+..  ..++.+.  ....  ...|.|.+++..
T Consensus         8 ~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   86 (122)
T 2cry_A            8 TLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA   86 (122)
T ss_dssp             CCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             EEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChh
Confidence            455667898888 7788899999999999999999987 999999988865  3455552  2222  457999999999


Q ss_pred             CC-eEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095         132 DA-GLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       132 d~-G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      |. |.|+|.+.|..|.....+.|.|...
T Consensus        87 D~~G~Y~C~a~N~~G~~~~~~~l~V~~~  114 (122)
T 2cry_A           87 DFQTIYNCTAWNSFGSDTEIIRLKEQGS  114 (122)
T ss_dssp             HHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             hCCceEEEEEECCCCeEEEEEEEEECCC
Confidence            99 9999999999998888877777653

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.45  E-value=2.5e-13  Score=88.95  Aligned_cols=78  Identities=14%  Similarity=0.321  Sum_probs=61.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ..+.+.+|+.+.|.|.+.+ |+  +.+.|+|+|..+..+..+...  .++    ....|.|.+++.+|+|.|+|.|.|  
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~--p~v~W~k~g~~l~~~~~~~~~--~~~----~~~~L~I~~~~~~D~G~Y~C~a~n--   72 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PG--GPVRWYKDGERLASQGRVQLE--QAG----ARQVLRVQGARSGDAGEYLCDAPQ--   72 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CS--TTCEEEETTEECCCCSSEEEE--ECS----SCEEEEESSCSSTTCEEEEEECTT--
T ss_pred             eEEEEecCCCEEEEEEECC-CC--cEEEEEECCEEccccccEEEe--ecC----CeEEEEecCCCCcccEEEEEEECC--
Confidence            3567889999999999865 66  789999999999877655443  344    346899999999999999998844  


Q ss_pred             CcEEeEEEEEE
Q psy1095         252 GEVVTSACLIV  262 (325)
Q Consensus       252 ~~~~~~~~l~v  262 (325)
                        ....+.|.|
T Consensus        73 --~~~~a~l~V   81 (84)
T 2lu7_A           73 --DSRIFLVSV   81 (84)
T ss_dssp             --TCEEEEEEE
T ss_pred             --EEEEEEEEE
Confidence              455666766

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.44  E-value=1.2e-12  Score=92.63  Aligned_cols=92  Identities=16%  Similarity=0.202  Sum_probs=67.8

Q ss_pred             EecCC-ceEecCCCeEEEEEEEEec--CCCeeEEeeCCeeCCC-----CCcEEEEec---CCeEEEEEccCCCCCCeEEE
Q psy1095          69 YAVPH-NKICDLGDTVRFQCSVTGQ--PAPWTSWSKDGKPATP-----NARVTIREK---EDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        69 ~~~~~-~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~~~~~~-----~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      .+.|. ...+.+|+++.|.|.+.+.  |.+.+.|++++..+..     .........   ....+|.|.+++.+|+|.|+
T Consensus        11 ~i~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   90 (122)
T 3s35_X           11 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT   90 (122)
T ss_dssp             EEESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEE
T ss_pred             EEcCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEE
Confidence            33444 4578899999999999984  4568899998874321     111111111   12357999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEECCCc
Q psy1095         138 IKVENNYGSVEATARLEIMDPRA  160 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v~~~~~  160 (325)
                      |.+.|..|.....+.|.|...|.
T Consensus        91 C~a~n~~g~~~~~~~l~V~~~p~  113 (122)
T 3s35_X           91 CAASSGLMTKKNSTFVRVHEKPF  113 (122)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEEC
T ss_pred             EEEccCCCceEEEEEEEEeccCe
Confidence            99999999888899999987643

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.44  E-value=1.6e-12  Score=86.80  Aligned_cols=82  Identities=17%  Similarity=0.352  Sum_probs=66.7

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      ++.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.....               ..|.|.+++.+|+|.|
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~---------------~~L~i~~v~~~d~G~Y   65 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPI--PHYQWFKNELPLTHETK---------------KLYMVPYVDLEHQGTY   65 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSC--CEEEEEETTEECTTCCS---------------SEEEESSCCGGGCEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCC--CEEEEEcCCeeCCcCCC---------------CeEEECCCCHHhCEEE
Confidence            355666666778899999999999999888  89999999988764432               3799999999999999


Q ss_pred             EEEEEeCCCcEE-eEEEEEE
Q psy1095         244 TCRVANELGEVV-TSACLIV  262 (325)
Q Consensus       244 ~C~~~~~~~~~~-~~~~l~v  262 (325)
                      +|.+.|..|... ..+.|.|
T Consensus        66 ~C~a~n~~g~~~s~~~~l~V   85 (91)
T 3bfo_A           66 WCHVYNDRDSQDSKKVEIII   85 (91)
T ss_dssp             EEEEECSSCEEECCCEEEEE
T ss_pred             EEEEEcCCCCEEeeeEEEEE
Confidence            999999998654 3455555

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.44  E-value=6e-14  Score=111.34  Aligned_cols=112  Identities=11%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             CCCCcccCCCCCCCccccccccccc------ccccC---CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeEEeeC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRLT---SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTSWSKD  102 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~---~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W~~~  102 (325)
                      +|.|.+++++|+|.|.|.+.+....      ...+.   .+|.+...+....+.+|+.++|.|.+.+. |.+ .++|+|+
T Consensus        94 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  173 (233)
T 3bqu_C           94 VFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID  173 (233)
T ss_dssp             EEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC
T ss_pred             EEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEEC
Confidence            6899999999999999999775431      12222   26777665544444579999999999884 443 7999999


Q ss_pred             CeeCCCCCcEEE--Ee-cCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095         103 GKPATPNARVTI--RE-KED----LRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus       103 ~~~~~~~~~~~~--~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +..+........  .. .++    ...|.|..+..+|.|.|+|.+.|...
T Consensus       174 g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          174 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             -----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             CeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            987764411110  01 111    23588888888999999999988643

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.43  E-value=3.6e-13  Score=91.80  Aligned_cols=83  Identities=24%  Similarity=0.394  Sum_probs=65.6

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+.+|+.+.|.|.+.+.|.  +.+.|++++..+.............+     ...|.|.+++.+|+|.|+|.|.|..|
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~--p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~g   89 (100)
T 3caf_A           17 LHAVPAANTVKFRCPAGGNPM--PTMRWLKNGKEFKQEHRIGGYKVRNQ-----HWSLIMESVVPSDKGNYTCVVENEYG   89 (100)
T ss_dssp             EEEECTTCCEEEECCEEEESC--CEEEEEETTEECCGGGSTTCCEEEGG-----GTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEecCCCEEEEEEEccccCC--CEEEEEECCEEcccccccccEEEecC-----eEEEEEccCCcCCCEEEEEEEEeCCC
Confidence            456788999999999999988  88999999998865443221111111     14799999999999999999999999


Q ss_pred             cEEeEEEEEE
Q psy1095         253 EVVTSACLIV  262 (325)
Q Consensus       253 ~~~~~~~l~v  262 (325)
                      .....+.|.|
T Consensus        90 ~~~~~~~l~V   99 (100)
T 3caf_A           90 SINHTYHLDV   99 (100)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9888877766

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.43  E-value=2.8e-13  Score=107.43  Aligned_cols=122  Identities=11%  Similarity=0.155  Sum_probs=76.4

Q ss_pred             CCCCcccCCCCCCCcccccc--cc--c-------ccccccC----CCCeeEecCCceEecCC-CeEEEEEEEEec-CCC-
Q psy1095          34 STPPRSISPLSSRTFTPYSL--NS--A-------IRTRRLT----SSPRFYAVPHNKICDLG-DTVRFQCSVTGQ-PAP-   95 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~--~~--~-------~~~~~~~----~~p~~~~~~~~~~v~~g-~~v~l~C~~~~~-p~~-   95 (325)
                      +|+|++++++|+|.|.|.+.  +.  .       ...+.+.    .+|.+........+.+| +.++|.|.+.+. |.+ 
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~  158 (232)
T 1dn0_B           79 SLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSI  158 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCC
T ss_pred             EEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCe
Confidence            78999999999999999987  32  1       1112222    24555432222234578 999999999885 776 


Q ss_pred             eeEEee-CCeeCCCCCcE-EEEecCC---eEEEEEccCCC--CCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          96 WTSWSK-DGKPATPNARV-TIREKED---LRFLEISEVTL--EDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        96 ~v~W~~-~~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      .++|++ ++..+.....+ .....+.   ...|.|.....  +|.|.|+|.+.|..+.......+.+
T Consensus       159 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~  225 (232)
T 1dn0_B          159 TFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV  225 (232)
T ss_dssp             EEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred             EEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence            999999 88876540000 0001111   23588888876  7899999999998876655554443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.43  E-value=4.4e-13  Score=89.18  Aligned_cols=73  Identities=19%  Similarity=0.427  Sum_probs=56.7

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      +.+|+.+.|.|.+.+ |+  +.+.|+|+|..+..+..+...  .++    ....|.|.+++.+|+|.|+|.|.|    ..
T Consensus        18 ~~~g~~v~l~C~v~~-p~--~~v~W~k~g~~i~~~~~~~i~--~~~----~~~~L~I~~v~~~D~G~Y~C~a~n----~~   84 (91)
T 2lvc_A           18 AITSECVMLACEVDR-ED--APVRWYKDGQEVEESDFVVLE--NEG----PHRRLVLPATQPSDGGEFQCVAGD----EC   84 (91)
T ss_dssp             CCTTCCEEEEEECSC-TT--SCCEEEETTSCCCCCSSCEEE--EET----TEEEEEESSCCGGGCSEEEEECSS----CE
T ss_pred             EECCCcEEEEEEECC-CC--cEEEEEECCEEeeeeeeeeEE--ecC----CeEEEEeCCCChhhcEEEEEEEcc----eE
Confidence            457999999999855 65  789999999999877665543  444    346899999999999999999855    34


Q ss_pred             eEEEEE
Q psy1095         256 TSACLI  261 (325)
Q Consensus       256 ~~~~l~  261 (325)
                      .++.|.
T Consensus        85 ~~~~lt   90 (91)
T 2lvc_A           85 AYFTVT   90 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455554

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.43  E-value=7.4e-13  Score=89.27  Aligned_cols=87  Identities=18%  Similarity=0.327  Sum_probs=70.0

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.|   +.+.|++++..+....+...   ..       ..|.|.+++.+|+|.
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p---p~i~W~k~g~~~~~~~~~~~---~~-------~~L~i~~~~~~D~G~   74 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV---QSINWLRDGVQLVESNRTRI---TG-------EEVEVRDSIPADSGL   74 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC---CEEEEEBTTBCCCCCSSEEE---CS-------SEEEESSCCGGGSEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC---CceEEEECCEecCCCCCEEE---eC-------CEEEECCCChHHCEE
Confidence            346666666778899999999999999874   58999999988765443221   12       489999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |+|.|.|..|.....+.|.|
T Consensus        75 Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           75 YACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEeccCCCcEEEEEEEEE
Confidence            99999999998888777765

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.43  E-value=9e-13  Score=89.42  Aligned_cols=88  Identities=22%  Similarity=0.298  Sum_probs=66.7

Q ss_pred             CCCeeEe-cCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYA-VPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~-~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+|.+.. .+....+.+|+++.|.|.+. +.|.+.+.|+|++........  ....   ..|.|.+++.+|+|.|+|.+.
T Consensus         8 ~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~---~~L~i~~v~~~D~G~Y~C~a~   82 (98)
T 1gl4_B            8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFN---GILTIRNVQPSDAGTYVCTGS   82 (98)
T ss_dssp             -CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EEET---TEEEECSCCGGGCEEEEEEEE
T ss_pred             CCcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCcee--ecCC---CEEEEeCCChhhCEEEEEEec
Confidence            3444444 34566899999999999998 589999999997554433321  1222   269999999999999999999


Q ss_pred             eCCeeEEEEEEEEEE
Q psy1095         142 NNYGSVEATARLEIM  156 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~  156 (325)
                      |..|.....+.|.|.
T Consensus        83 n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           83 NMFAMDQGTATLHVQ   97 (98)
T ss_dssp             CSSCEEEEEEEEEEC
T ss_pred             CCCCccccEEEEEEe
Confidence            999988877777764

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.43  E-value=1.3e-12  Score=89.45  Aligned_cols=87  Identities=14%  Similarity=0.182  Sum_probs=67.6

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  256 (325)
                      ..++.+.|.|.+.|.|.  +.+.|++++..+..+.......... ......+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus        14 ~~~~~~~~~c~v~G~P~--P~i~W~k~g~~l~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   90 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPK--PALQWFYNGAILNESKYICTKIHVT-NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK   90 (103)
T ss_dssp             CCCCEEEEEEEEECSSC--CEEEEEETTEEECCCSSEEEEEEEE-CSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             eECcEEEEEEEEEEeCC--CEEEEEECCEECCCCCcEeEEEEec-CCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeE
Confidence            35788999999999998  8999999999987664322221111 12224567999999999999999999999999999


Q ss_pred             EEEEEEEeeC
Q psy1095         257 SACLIVDVVK  266 (325)
Q Consensus       257 ~~~l~v~~~~  266 (325)
                      ++.|.|...+
T Consensus        91 ~~~l~V~~~P  100 (103)
T 1wwb_X           91 QISAHFMGWP  100 (103)
T ss_dssp             EEEECCSCCC
T ss_pred             EEEEEECCCC
Confidence            8888874433

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.43  E-value=8.6e-14  Score=110.10  Aligned_cols=116  Identities=15%  Similarity=0.158  Sum_probs=76.7

Q ss_pred             CCCCCcccCCCCCCCcccccccccc--------------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-C
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI--------------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P   93 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~--------------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p   93 (325)
                      .+|.|++++++|+|.|.|.+.+..+              ..+.+.    .+|.+...+....+.+|+.++|.|.+.+. |
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P  159 (228)
T 3bae_H           80 VFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP  159 (228)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBS
T ss_pred             EEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeC
Confidence            4789999999999999999976531              112222    35666554433446789999999999885 8


Q ss_pred             CC-eeEEeeCCeeCCCCCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          94 AP-WTSWSKDGKPATPNARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        94 ~~-~v~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      .+ .+.|++++..+.......+...+   ....|.|.....+| |.|+|.+.|..+....
T Consensus       160 ~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~  218 (228)
T 3bae_H          160 EPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKV  218 (228)
T ss_dssp             SCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             CCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCE
Confidence            77 99999988754211111111111   12358888888766 9999999998775443

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.43  E-value=1.2e-13  Score=103.99  Aligned_cols=136  Identities=17%  Similarity=0.209  Sum_probs=85.0

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCC--------CceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD--------MKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      ...+.+|+.|+|.|.+. .|.  +.+.|++++..+..-..        +..+.....    ....|.|.+++.+|+|.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~--~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~----~~~sL~I~~v~~~DsG~Y~   76 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPL--KEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDT----VSGSLTIYNLTSSDEDEYE   76 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCC--SCEEEEETTEEEEEEETTEEEECGGGTTSEEECT----TTCCEEECSCCGGGCEEEE
T ss_pred             EEEEEcCCCEEEcCCCC-CCc--ceEEEEeCCcEEEEEcCCCcccccccCCcEEEeC----CCCeEEECCCChhhCceEE
Confidence            34677899999999884 344  89999998865421100        010111110    1258999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEEEeeCCe-ecC-------------CCCceE-EEEeCCE-------EEEEEcCCCCCCCeEEEE
Q psy1095         245 CRVANELGEVVTSACLIVDVVKGK-DLT-------------SDGRLN-IITVGGT-------SVLTIEDITGDDSGKYQV  302 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v~~~~~~-~~~-------------~~~~~~-~~~~~~~-------~~l~i~~v~~~d~G~Y~C  302 (325)
                      |.+.+..+  ...+.|.|...... .+.             ...... .+..++.       ..|.+.  ...|.|.|+|
T Consensus        77 C~~~n~~~--~~~~~L~V~~~~~~p~i~~~~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~~l~~~--~~~~~g~Y~C  152 (171)
T 1ccz_A           77 MESPNITD--TMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQ--WTNLRAPFKC  152 (171)
T ss_dssp             EECTTCCS--CEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEE--CSCCSSCEEE
T ss_pred             EEEeCCCC--cEEEEEEEECcCCCCEEEEecCCcEEEEEeCCCCCcEEEEEECCEECcCCcceEEEEe--ccCCCceEEE
Confidence            99998877  45566766443221 110             111111 1222332       123333  3678999999


Q ss_pred             EEECCCeeEEeEEEEEE
Q psy1095         303 HVSNQHGSDSCYASVAV  319 (325)
Q Consensus       303 ~a~n~~g~~~~~~~l~V  319 (325)
                      .|.|..|..+..+.|..
T Consensus       153 ~a~N~~~~~~~~~~l~c  169 (171)
T 1ccz_A          153 KAVNRVSQESEMEVVNC  169 (171)
T ss_dssp             EEEETTEEEEEEECCCC
T ss_pred             EEEcccCcccceeEEeC
Confidence            99999999888776643

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.43  E-value=9.9e-13  Score=90.10  Aligned_cols=92  Identities=25%  Similarity=0.364  Sum_probs=69.6

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      +.+...+....+.+|+.+.|.|.+.+ ++  +.+.|++++..+......+.....++    ....|.|.+++.+|+|.|+
T Consensus         8 ~~~~~~~~~~~v~~G~~v~l~C~~~~-~~--~~v~W~k~g~~l~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~   80 (103)
T 1x44_A            8 IMVTKQLEDTTAYCGERVELECEVSE-DD--ANVKWFKNGEEIIPGPKSRYRIRVEG----KKHILIIEGATKADAAEYS   80 (103)
T ss_dssp             CCCSBCCCCEEEETTEEEEEEEECSS-SS--CCCEEEETTEECCCSTTCSEEEEEET----TEEEEEEEEECTTTCSEEE
T ss_pred             ceeeccCCCEEEECCCCEEEEEEecC-CC--CeEEEEECCEECCCCCceEEEEEEcC----CEEEEEECCCCcccCEEEE
Confidence            33566667788999999999999976 55  78999999999876663322322333    3468999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEEEeeCC
Q psy1095         245 CRVANELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v~~~~~  267 (325)
                      |.|.|    ....+.|.|...+.
T Consensus        81 C~a~n----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           81 VMTTG----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             EEETT----EEEEEEEEEECCCS
T ss_pred             EEECC----CcEEEEEEEeCCCC
Confidence            99976    46677777755443

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.42  E-value=2.1e-14  Score=115.41  Aligned_cols=113  Identities=12%  Similarity=0.145  Sum_probs=80.0

Q ss_pred             CCCCcccCCCCCCCccccccccccc------ccccC---CCCeeEecCCceEecCCCeEEEEEEEEe-cCCC-eeEEeeC
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAIR------TRRLT---SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP-WTSWSKD  102 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~~------~~~~~---~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~~~  102 (325)
                      +|.|.+++++|+|.|.|.+.+....      ...+.   .+|.+...+....+.+|+.++|.|.+.+ .|.+ .++|+++
T Consensus       110 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  189 (252)
T 3bkj_L          110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID  189 (252)
T ss_dssp             EEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEEC
Confidence            7899999999999999999776431      12222   3577766554444457999999999988 4554 7999999


Q ss_pred             CeeCCCCCcEE--EE-ecCC----eEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095         103 GKPATPNARVT--IR-EKED----LRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus       103 ~~~~~~~~~~~--~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      +..+.......  .. ..++    ...|.|.++..+|+|.|+|.+.|....
T Consensus       190 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          190 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             TEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            99876441111  00 1111    235899999999999999999987643

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.42  E-value=2.1e-13  Score=110.30  Aligned_cols=111  Identities=13%  Similarity=0.223  Sum_probs=78.1

Q ss_pred             CCCCCcccCCCCCCCcccccccccc------cccccCCC------------------Cee-EecCCceEecCCCeEEEEE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI------RTRRLTSS------------------PRF-YAVPHNKICDLGDTVRFQC   87 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~------~~~~~~~~------------------p~~-~~~~~~~~v~~g~~v~l~C   87 (325)
                      .+|.|.+++++|+|.|.|.+.+...      ..+.+..+                  |.+ ...+....+.+|++++|.|
T Consensus        81 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C  160 (264)
T 2gjj_A           81 FTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISC  160 (264)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEE
Confidence            3789999999999999999977532      11233232                  222 3334445789999999999


Q ss_pred             EEEecCC--CeeEEeeCC--ee---CC----C----------CCcEEEEe--cCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          88 SVTGQPA--PWTSWSKDG--KP---AT----P----------NARVTIRE--KEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        88 ~~~~~p~--~~v~W~~~~--~~---~~----~----------~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+.+.+.  +.+.|+++.  ..   +.    .          ..++.+..  .....+|.|.+++.+|+|.|+|.+.|.
T Consensus       161 ~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          161 KASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            9988763  789999863  21   10    0          23444432  234678999999999999999999885

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.42  E-value=1.1e-12  Score=91.92  Aligned_cols=88  Identities=16%  Similarity=0.160  Sum_probs=68.5

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec-CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD-SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT  256 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  256 (325)
                      .+..+.|.|.+.|+|.  +.++|+|+|..+..+.......... .+.....+.|.|.+++..|+|.|+|.|.|..|....
T Consensus        14 ~~~~~~l~c~v~G~P~--P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPA--PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCEEEEEEEECCSSC--CEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cCccEEEEEEEeeeCC--CeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            5778999999999999  9999999999998765543332211 011113468999999999999999999999999988


Q ss_pred             EEEEEEEeeCC
Q psy1095         257 SACLIVDVVKG  267 (325)
Q Consensus       257 ~~~l~v~~~~~  267 (325)
                      ++.|.|...+.
T Consensus        92 t~~l~v~~~P~  102 (126)
T 1he7_A           92 SIMAAFMDNPF  102 (126)
T ss_dssp             EEEECCCSCTT
T ss_pred             EEEEEEEcCCC
Confidence            88888754443

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.42  E-value=2.2e-13  Score=110.52  Aligned_cols=110  Identities=15%  Similarity=0.282  Sum_probs=76.9

Q ss_pred             CCCCcccCCCCCCCcccccccccc------cccccCCC---------C--------------eeEecCCceEecCCCeEE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI------RTRRLTSS---------P--------------RFYAVPHNKICDLGDTVR   84 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~------~~~~~~~~---------p--------------~~~~~~~~~~v~~g~~v~   84 (325)
                      +|.|.+++++|+|.|.|.+.+...      ..+.+..+         |              .....|....+.+|++++
T Consensus        91 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~  170 (268)
T 1x9q_A           91 TLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMK  170 (268)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEE
T ss_pred             EEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEE
Confidence            689999999999999999977532      11222221         1              123445567899999999


Q ss_pred             EEEEEEecC--CCeeEEeeCC--eeC-------------------CCCCcEEEEec--CCeEEEEEccCCCCCCeEEEEE
Q psy1095          85 FQCSVTGQP--APWTSWSKDG--KPA-------------------TPNARVTIREK--EDLRFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        85 l~C~~~~~p--~~~v~W~~~~--~~~-------------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~  139 (325)
                      |.|.+.+.+  .+.+.|+++.  ..+                   ....++.+..+  ....+|.|.+++.+|+|.|+|.
T Consensus       171 L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  250 (268)
T 1x9q_A          171 LSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCT  250 (268)
T ss_dssp             EEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence            999998765  3789999852  211                   12245555432  2356799999999999999999


Q ss_pred             EEeC
Q psy1095         140 VENN  143 (325)
Q Consensus       140 ~~~~  143 (325)
                      +.+.
T Consensus       251 a~~~  254 (268)
T 1x9q_A          251 GASY  254 (268)
T ss_dssp             EEET
T ss_pred             EccC
Confidence            9764

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.42  E-value=6.4e-12  Score=112.23  Aligned_cols=171  Identities=16%  Similarity=0.170  Sum_probs=107.1

Q ss_pred             ecCCCeEEEEEEEEecCC----CeeEEeeCCeeCCCCCcE-EEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCee-
Q psy1095          77 CDLGDTVRFQCSVTGQPA----PWTSWSKDGKPATPNARV-TIREKED----LRFLEISEVTLEDAGLYTIKVENNYGS-  146 (325)
Q Consensus        77 v~~g~~v~l~C~~~~~p~----~~v~W~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~-  146 (325)
                      +..+.+..|.|.+.+...    ..|+|++++..+...... .....++    ...|.|......|.+.|+|++.+.... 
T Consensus       355 ~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~v~~~~~~~  434 (551)
T 1ntl_A          355 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  434 (551)
T ss_pred             eeeccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEEEecCCCCC
Confidence            556788999999988543    579999998765422110 0111111    234777777777889999999876552 


Q ss_pred             -EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcce
Q psy1095         147 -VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL  225 (325)
Q Consensus       147 -~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  225 (325)
                       ..+.+.+.+..    ..+|.+........+..|+.++|.|.+.++.+....|.|+++|..+......... ...+..+.
T Consensus       435 ~~~~~~~~~~~~----~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~~~~~~~~~-~~~dgty~  509 (551)
T 1ntl_A          435 PIEKTISKTKGR----PKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPI-MNTNGSYF  509 (551)
T ss_pred             CeEEEEecCCCC----CcCCceEEeCCChhhccCCceEEEEEEEEeECCCCEEEEEECCEEccCceeccce-eCCCCCEE
Confidence             22333333221    1235544433333345689999999999977765799999999987522111111 11122334


Q ss_pred             eEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         226 VIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       226 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ..+.|.+......+.+.|+|.|.+...
T Consensus       510 ~~s~l~v~~~~~~~~~~ytC~V~h~~l  536 (551)
T 1ntl_A          510 VYSKLNVQKSNWEAGNTFTCSVLHEGL  536 (551)
T ss_pred             EEEEEEEcHHHcCCCCeEEEEEEECCC
Confidence            446677776666678899999988654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.42  E-value=7.2e-14  Score=112.81  Aligned_cols=111  Identities=14%  Similarity=0.140  Sum_probs=79.9

Q ss_pred             CCCCCCcccCCCCCCCccccccccccc--------ccccCC-----------------CCeeEecCCceEecCCCeEEEE
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSAIR--------TRRLTS-----------------SPRFYAVPHNKICDLGDTVRFQ   86 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~--------~~~~~~-----------------~p~~~~~~~~~~v~~g~~v~l~   86 (325)
                      ..+|.|++++++|+|.|.|.+.+....        .+.+..                 +|.+...|....+.+|++++|.
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~  157 (259)
T 3omz_A           78 NLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLN  157 (259)
T ss_dssp             CCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEEC
T ss_pred             eEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEE
Confidence            346899999999999999999765321        112222                 3567777888889999999999


Q ss_pred             EEEEec-CCCeeEEeeCCe--eC------------CCCCcEEEE--ecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          87 CSVTGQ-PAPWTSWSKDGK--PA------------TPNARVTIR--EKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        87 C~~~~~-p~~~v~W~~~~~--~~------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      |.+.+. +.+.+.|+|...  .+            ....++.+.  .......|.|.+++.+|+|.|+|.+..
T Consensus       158 C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          158 CLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             CEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             EECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            998774 788999998431  10            001344433  122345699999999999999999974

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.41  E-value=1e-12  Score=88.61  Aligned_cols=83  Identities=27%  Similarity=0.478  Sum_probs=69.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      ..|....+.+|+++.|.|.+.+  .|.+.|++++..+....++....    ..|.|.+++.+|+|.|+|.+.|..|....
T Consensus         6 ~~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   79 (95)
T 4hwu_A            6 SQPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIG----EYLQIKGATPRDSGLYACTAARTVDSETW   79 (95)
T ss_dssp             --CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEET----TEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             cCCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeC----CEEEECcCCcccCEEEEEEEccCCCcEEE
Confidence            3566677999999999999876  57899999999998777666542    36999999999999999999999998888


Q ss_pred             EEEEEEECC
Q psy1095         150 TARLEIMDP  158 (325)
Q Consensus       150 ~~~l~v~~~  158 (325)
                      .+.|.|..+
T Consensus        80 ~~~l~V~~~   88 (95)
T 4hwu_A           80 IFMVNVTDA   88 (95)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            888888764

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.41  E-value=4.1e-14  Score=107.53  Aligned_cols=102  Identities=11%  Similarity=0.051  Sum_probs=71.0

Q ss_pred             CCCCCCCCcccCCCCCCCccccccccccc----ccccCC---CCeeEecCCceEecCCCeEEEEEEE-EecCCCeeEEee
Q psy1095          30 STPRSTPPRSISPLSSRTFTPYSLNSAIR----TRRLTS---SPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSK  101 (325)
Q Consensus        30 ~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~----~~~~~~---~p~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~  101 (325)
                      ....+|+|++++.+|+|.|.|.+.+....    .+.+..   .|.+.        ..+++++|.|.+ .+ |.|.+.|++
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~L~V~~~~~~P~i~--------~~~~~v~L~C~~~~g-p~p~i~W~~  136 (180)
T 2dru_A           66 KTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIY--------WECSNATLTCEVLEG-TDVELKLYQ  136 (180)
T ss_dssp             TTTCCEEECSCCGGGCEEEEEEEESSSEEEEEEEEEEECCCCCCEEE--------EEGGGTEEEEECSSC-TTCEEEEEE
T ss_pred             CCCccEEEcCCCHHHCeEEEEEEEcCCeEEEEEEEEEECCCCCCEEE--------ecCCCEEEEEEeCCC-CCCEEEEEE
Confidence            34578999999999999999997665411    112211   22322        234679999999 66 899999999


Q ss_pred             CCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095         102 DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      ++..+..       ..  ..+|.+..  .+|+|.|+|.+.|..+......
T Consensus       137 ~~~~l~~-------~~--~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~  175 (180)
T 2dru_A          137 GKEHLRS-------LR--QKTMSYQW--TNLRAPFKCKAVNRVSQESEME  175 (180)
T ss_dssp             TTEEEEE-------ES--SSEEEEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred             CCeECcC-------CC--CCEEEEEE--hhcCccEEEEEecCcCccccce
Confidence            9987641       11  12455532  7899999999999988665443

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=7.9e-13  Score=90.66  Aligned_cols=92  Identities=20%  Similarity=0.320  Sum_probs=71.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      ++.|...+....+.+|+.+.|.|.+.+.+.+ +.+.|++++..+..+.++...  .++    ....|.|.+++.+|+|.|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~-~~v~W~k~g~~i~~~~r~~~~--~~~----~~~~L~I~~v~~~D~G~Y   80 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESAS-DPAMWTVGGKTVGSSSRFQAT--RQG----RKYILVVREAAPSDAGEV   80 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCS-SCBCCBSSSSBCSBCSSCEEE--EET----TEEEEEECSCCTTTCSCE
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCC-ceeEEEECCEECCCCCCEEEE--EcC----CEEEEEECCCCHHHCEEE
Confidence            4566666778899999999999999877642 579999999988776655433  333    346899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEEeeC
Q psy1095         244 TCRVANELGEVVTSACLIVDVVK  266 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~~~~  266 (325)
                      +|.+    ++...++.|.|...+
T Consensus        81 ~C~a----~~~~~~a~L~V~~~p   99 (104)
T 2eny_A           81 VFSV----RGLTSKASLIVRERS   99 (104)
T ss_dssp             EEEE----TTEEEEECEEEECCC
T ss_pred             EEEE----CCeeEEEEEEEeCCC
Confidence            9988    445677788885443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.41  E-value=9.3e-13  Score=111.50  Aligned_cols=104  Identities=16%  Similarity=0.226  Sum_probs=68.2

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC----CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN----ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      .+....+.+|+++.|.|.+.| |.|.++|++++..+...    .++.+ ..   .+|.|.+++.+|+|.|+|.+.|..|.
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~---~~L~I~~v~~~D~G~Y~C~a~N~~g~  326 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RN---GDLFFKKVQVEDGGVYTCYAMGETFN  326 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ET---TEEEESSCCTTSCEEEEEEEECSSCE
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ec---CeEEEeecCcccCEEEEEEEecCCCc
Confidence            345668999999999999998 99999999977654322    24555 22   35999999999999999999999998


Q ss_pred             EEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCee
Q psy1095         147 VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI  198 (325)
Q Consensus       147 ~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~  198 (325)
                      ....+.|.|...      +           .+|+.+.|.|.+.|.|+  |.+
T Consensus       327 ~~~~~~l~V~~~------~-----------~~g~~~~l~C~~~g~P~--P~i  359 (361)
T 2xot_A          327 ETLSVELKVYNF------T-----------LHGHHDTLNAAADPWSH--PQF  359 (361)
T ss_dssp             EEEEEEEEEESS------C-----------CC--------------------
T ss_pred             cEEEEEEEEEee------e-----------ccCCceEEEEEeCCCCC--Ccc
Confidence            888888888543      1           45789999999999987  554

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.41  E-value=1.7e-11  Score=92.05  Aligned_cols=167  Identities=15%  Similarity=0.231  Sum_probs=108.3

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      ..+.+.|....|..|+++.|+|.+.. +.+. +.|-..   +.   +.......+-..|.|.+++  |.|.|.|.+....
T Consensus         3 f~v~v~P~~~~V~~G~S~~l~Cs~~c-~~p~~~glet~---l~---~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~~   73 (192)
T 1zxq_A            3 FEVHVRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLETS---LN---KILLDEQAQWKHYLVSNIS--HDTVLQCHFTCSG   73 (192)
T ss_dssp             CCEEEESSEEEECTTEEEEEEEEESC-SSCSEEEEECS---SE---EEEEEEETTEEEEEEEEEC--SCEEEEEEEEETT
T ss_pred             cEEEEeCCCcEEeCCCcEEEEEECCC-CCccccccccc---cC---ceEEcCCCCeEEEEEeccc--cCCeeEEEEECCC
Confidence            45667788888999999999999853 4444 345421   11   1122222344569999998  7889999998876


Q ss_pred             eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCc
Q psy1095         145 GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE  223 (325)
Q Consensus       145 ~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  223 (325)
                      ....+.+.|.|+..|.   .+.+..  .+..+.+|+.++|.|.+.+ .|.....+.|++++..+.........  ...  
T Consensus        74 ~~~~~~~~itVy~~P~---~v~i~~--~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f~~~~--~~~--  144 (192)
T 1zxq_A           74 KQESMNSNVSVYQPPR---QVILTL--QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAA--PAP--  144 (192)
T ss_dssp             EEEEEEEEEEECBCCC---CCEEEE--ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSST--TCT--
T ss_pred             cceEEEEEEEEEeCCC---CceEcc--CCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeeccccccc--CcC--
Confidence            7778889999988643   233332  2346889999999999985 45433568999999887532110000  000  


Q ss_pred             ceeEEEEEeCCCCCCCCe-EEEEEEEeCC
Q psy1095         224 NLVIARLKIPHVYPEDEG-EFTCRVANEL  251 (325)
Q Consensus       224 ~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~  251 (325)
                      ......+.+. ++++|.| .|+|.|.-..
T Consensus       145 ~~~tv~~~~~-~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          145 QEATATFNST-ADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             TCEEEEEEEE-CCGGGGGCEEEEEEEEEC
T ss_pred             cceEEEEEEe-cchhhCCceEEEEEEecC
Confidence            0112234444 4555666 9999998765

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.40  E-value=3.7e-13  Score=105.90  Aligned_cols=106  Identities=15%  Similarity=0.168  Sum_probs=76.1

Q ss_pred             CCCCcccCCCCCCCcccccccccc-------ccccc----CCCCeeE-ecCCceEecCCCeEEEEEEEEe-cCC--CeeE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSAI-------RTRRL----TSSPRFY-AVPHNKICDLGDTVRFQCSVTG-QPA--PWTS   98 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~~-------~~~~~----~~~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~p~--~~v~   98 (325)
                      +|.|++++++|+|.|.|.+.+...       ....+    ..+|.+. ..+...  .+|+.++|.|.+.+ .|.  +.+.
T Consensus        82 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~  159 (221)
T 3m8o_H           82 FLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVT  159 (221)
T ss_dssp             EEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEE
Confidence            589999999999999999876531       11122    2355555 333333  78999999999988 676  4899


Q ss_pred             EeeCCeeCC----------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          99 WSKDGKPAT----------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        99 W~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      |++++..+.          ....+...     ..|.|......|.|.|+|.+.+..+.
T Consensus       160 W~~~g~~~~~~~~~~~~~~~~~~~~~~-----s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          160 WSESGQGVTARNFPPSQDASGDLYTTS-----SQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             ESCCSTTCEEEECCCEECSSSSCEEEE-----EEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             EEECCEECceEEcCceeeCCCCcEEEE-----EEEEECHHHcCCCCeEEEEEEECCCC
Confidence            999987662          11222221     24889999999999999999987654

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.40  E-value=2.9e-12  Score=92.70  Aligned_cols=88  Identities=23%  Similarity=0.397  Sum_probs=67.7

Q ss_pred             cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC----------CcEEEEe---cCCeEEEEEc
Q psy1095          60 RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN----------ARVTIRE---KEDLRFLEIS  126 (325)
Q Consensus        60 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~----------~~~~~~~---~~~~~~l~i~  126 (325)
                      .....||.|...|....+.+|+++.|.|.+.+.|.|.+.|++++..+...          .++....   ......|.|.
T Consensus        16 ~~~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   95 (137)
T 3qr2_A           16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID   95 (137)
T ss_dssp             -----CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEEC
T ss_pred             CCCCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEEC
Confidence            34558999999999999999999999999999999999999987765432          1232221   1234679999


Q ss_pred             cCCCCCCeEEEEEEEeCCeeE
Q psy1095         127 EVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      +++.+|+|.|+|.+.|..|..
T Consensus        96 ~v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           96 TLVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             SCCGGGCEEEEEEEECCTTSS
T ss_pred             CCCcccCEEEEEEEEecCCcc
Confidence            999999999999999987753

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.40  E-value=1.3e-13  Score=107.33  Aligned_cols=135  Identities=16%  Similarity=0.204  Sum_probs=87.6

Q ss_pred             eeeecccCCCCcccCC---CCCC------CCCCCCCcccCCCCCCCcccccccccccc-----c----ccCCCCeeEecC
Q psy1095          11 LSVKLTRPSGLMSGHS---TPRS------TPRSTPPRSISPLSSRTFTPYSLNSAIRT-----R----RLTSSPRFYAVP   72 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~---~~~~------~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~----~~~~~p~~~~~~   72 (325)
                      +.++|.++++.+....   ..+.      ....|.|.+++.+|+|.|+|.+.+.....     .    .+..+|.+...+
T Consensus        37 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~  116 (207)
T 2vol_A           37 VQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLP  116 (207)
T ss_dssp             CEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEEC
T ss_pred             eEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeC
Confidence            4678887775443210   0000      11358899999999999999998765421     1    234678776665


Q ss_pred             CceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEE-EEecCCe----EEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          73 HNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVT-IREKEDL----RFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~-~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      ......+|+.+.|.|.+.| .|. +.++|+++|..+....... ....++.    ..|.|.....+|.|.|+|.+.|...
T Consensus       117 ~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          117 PPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             CCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             CCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            5443446999999999988 455 4899999999875422111 1112221    2355655556789999999998754

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.40  E-value=5.3e-12  Score=85.02  Aligned_cols=85  Identities=16%  Similarity=0.252  Sum_probs=67.2

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      +.|...+....+.+|+.+.|.|.+ +.+.  +.+.|++++..+..+.++...  ..+    ....|.|.+++.+|+|.|+
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~--~~v~W~k~~~~l~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~Y~   79 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAG--VKVRWQRGGSDISASNKYGLA--TEG----TRHTLTVREVGPADQGSYA   79 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSS--CCCEEECSSSEECSSTTCEEE--EET----TEEEEEESSCCTTCCSEEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCC--CeEEEEECCEECCCCCcEEEE--EcC----CEEEEEEcCCCcccCEEEE
Confidence            556666677889999999999999 5565  789999999988766554433  333    3468999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEE
Q psy1095         245 CRVANELGEVVTSACLIV  262 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v  262 (325)
                      |.+    +.....+.|.|
T Consensus        80 C~a----g~~~~~~~l~V   93 (95)
T 2k1m_A           80 VIA----GSSKVKFDLKV   93 (95)
T ss_dssp             EEE----TTEEEEEEEEE
T ss_pred             EEE----CCceEEEEEEE
Confidence            999    55666677766

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.40  E-value=7.3e-14  Score=110.26  Aligned_cols=113  Identities=12%  Similarity=0.186  Sum_probs=76.1

Q ss_pred             CCCCCcccCCCCCCCcccccccccc-------------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CC
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI-------------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PA   94 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~-------------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~   94 (325)
                      .+|.|++++++|+|.|.|.+.+..+             ..+.+.    .+|.+...+....+.+|+.++|.|.+.+. |.
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~  158 (225)
T 1op3_H           79 VYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  158 (225)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSS
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECC
Confidence            4789999999999999999977531             112222    24555443322235689999999999885 77


Q ss_pred             C-eeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          95 P-WTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        95 ~-~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      + .+.|++++..+...........++    ...|.|..+..+| |.|+|.+.|..+.
T Consensus       159 p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          159 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             CCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             CeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence            6 999999987642110000111111    2358898888888 9999999987654

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.39  E-value=3.9e-12  Score=88.39  Aligned_cols=100  Identities=17%  Similarity=0.337  Sum_probs=71.4

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCce-EEEe-cCCcceeEEEEEeCCCCCCCC
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP-EVQV-DSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.+.+.+.+.|++++..+........ .... .+........|.|.+++.+|+
T Consensus         9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A            9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence            35777777777889999999999999977543389999999988764321000 0000 011112347899999999999


Q ss_pred             eEEEEEEEeCCCc-EEeEEEEEE
Q psy1095         241 GEFTCRVANELGE-VVTSACLIV  262 (325)
Q Consensus       241 G~Y~C~~~~~~~~-~~~~~~l~v  262 (325)
                      |.|+|.|.|..|. ....+.|.|
T Consensus        89 G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           89 GXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999987 346666665

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.9e-13  Score=91.46  Aligned_cols=83  Identities=24%  Similarity=0.424  Sum_probs=67.2

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.+...|....+.+|++++|.|.+.+.|.+.+.|+|++..+....         ...|.|.+++.+|+|.|+|.+.|.
T Consensus         9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~   79 (96)
T 2ens_A            9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEIGPQDQGTYSCVATHS   79 (96)
T ss_dssp             CSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC---------CSEEEEESCCTTTCEEEECEECCS
T ss_pred             CCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC---------CCEEEECCCCcccCEEEEEEEEeC
Confidence            56788888888889999999999999999999999999998876432         236999999999999999999986


Q ss_pred             CeeE--EEEEEEEE
Q psy1095         144 YGSV--EATARLEI  155 (325)
Q Consensus       144 ~~~~--~~~~~l~v  155 (325)
                      .+..  ...+.|.|
T Consensus        80 ~~~~~~s~~~~v~V   93 (96)
T 2ens_A           80 SHGPQESRAVSISI   93 (96)
T ss_dssp             SCCCEECCCEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            4432  33444444

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.39  E-value=2.1e-13  Score=109.64  Aligned_cols=120  Identities=13%  Similarity=0.169  Sum_probs=78.1

Q ss_pred             CCCCcccCCCCCCCccccccccc-------c--ccccc----CCCCeeEecCCceEecCCCeEEEEEEEEe-cCCC-eeE
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSA-------I--RTRRL----TSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP-WTS   98 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~-------~--~~~~~----~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~v~   98 (325)
                      +|+|++++.+|+|.|.|.+.+..       +  ....+    ..+|.+...+....+.+|+.++|.|.+.+ .|.+ .+.
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~  159 (253)
T 3liz_H           80 FLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  159 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEE
Confidence            48999999999999999997652       1  11222    25666665555455678999999999988 6766 899


Q ss_pred             EeeCCeeCCCCCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095          99 WSKDGKPATPNARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE  154 (325)
Q Consensus        99 W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      |++++..+...........+   ....|.|.....+| |.|+|.+.|..+.......+.
T Consensus       160 W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~  217 (253)
T 3liz_H          160 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  217 (253)
T ss_dssp             EGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEec
Confidence            99988743110000001111   11458899999999 999999999877655544444

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=9.6e-13  Score=90.18  Aligned_cols=92  Identities=21%  Similarity=0.427  Sum_probs=70.5

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+ +.  +.+.|++++..+....++...  .++    ....|.|.+++.+|+|.
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~--~~v~W~k~g~~~~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~   77 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AG--TPVHWLKDRKAIRKSQKYDVV--CEG----TMAMLVIRGASLKDAGE   77 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SS--CCCCEEESSCBCCCSSSEEEE--EET----TEEEEEESSCCTTTCSE
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CC--CcEEEEECCEEccCCCCEEEE--ECC----CEEEEEECCCCcccCEE
Confidence            3567777777888999999999999986 55  689999999888665543332  333    34689999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeCC
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~~  267 (325)
                      |+|.+.|    ....+.|.|...+.
T Consensus        78 Y~C~a~n----~~~~~~l~V~~~p~   98 (103)
T 2edf_A           78 YTCEVEA----SKSTASLHVEEKAS   98 (103)
T ss_dssp             EEEECSS----CEEEEEEEECCCSS
T ss_pred             EEEEEcc----CCcEEEEEEeCCCC
Confidence            9999988    35667777754443

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=89.04  Aligned_cols=80  Identities=21%  Similarity=0.395  Sum_probs=67.3

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL  153 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  153 (325)
                      ...+.+|+++.|.|.+. .|.+.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.+.+    ....+.|
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~----~~~~~~l   94 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----QQLSFRL   94 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT----EECCEEE
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC----CcEEEEE
Confidence            45788999999999998 788999999999999887788877777778899999999999999999843    3445677


Q ss_pred             EEECC
Q psy1095         154 EIMDP  158 (325)
Q Consensus       154 ~v~~~  158 (325)
                      .|..+
T Consensus        95 ~V~~p   99 (102)
T 2eo1_A           95 QVAGQ   99 (102)
T ss_dssp             EEESC
T ss_pred             EEeCC
Confidence            77654

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.39  E-value=9.1e-12  Score=88.09  Aligned_cols=93  Identities=18%  Similarity=0.270  Sum_probs=66.7

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEecc----CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL----DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  248 (325)
                      ...+.+|+.+.|.|.+.+.|.+.+.+.|++++..+..    .......  .........+.|.|.+++.+|+|.|+|.|.
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ--SGSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEE--EETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccc--cCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            3478899999999999996544378999998874321    1111000  000011134689999999999999999999


Q ss_pred             eCCCcEEeEEEEEEEeeCC
Q psy1095         249 NELGEVVTSACLIVDVVKG  267 (325)
Q Consensus       249 ~~~~~~~~~~~l~v~~~~~  267 (325)
                      |..|.....+.|.|...+-
T Consensus        95 n~~g~~~~~~~l~V~~~p~  113 (122)
T 3s35_X           95 SGLMTKKNSTFVRVHEKPF  113 (122)
T ss_dssp             CSSCEEEEEEEEEEEEEEC
T ss_pred             cCCCceEEEEEEEEeccCe
Confidence            9999999888888865543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.38  E-value=3.4e-12  Score=90.55  Aligned_cols=91  Identities=12%  Similarity=0.232  Sum_probs=70.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC--------CCCCcEEEEe-cCCeEEEEEccCCCCCCeEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA--------TPNARVTIRE-KEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      +...+....+.+|++++|.|.+.+.|.+.+.|++++..+        ....++.+.. .....+|.|.+++.+|+|.|+|
T Consensus         4 ~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   83 (124)
T 3rbg_A            4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKC   83 (124)
T ss_dssp             CCCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             ccCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEE
Confidence            344556678999999999999999899999999765432        1334454432 3345789999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEECCC
Q psy1095         139 KVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       139 ~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      .+.|. +.....+.|.|...|
T Consensus        84 ~a~n~-g~~~~~~~l~V~~~P  103 (124)
T 3rbg_A           84 LHYSD-SVSTKEVKVIVLATM  103 (124)
T ss_dssp             EEESS-SEEEEEEEEEEECC-
T ss_pred             EEEcC-CCCcEEEEEEEEeCC
Confidence            99998 888888889988764

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.38  E-value=1e-13  Score=108.83  Aligned_cols=135  Identities=14%  Similarity=0.199  Sum_probs=86.7

Q ss_pred             eeeecccCCCCcccCCC---CC------CCCCCCCCcccCCCCCCCcccccccccccc-----c----ccCCCCeeEecC
Q psy1095          11 LSVKLTRPSGLMSGHST---PR------STPRSTPPRSISPLSSRTFTPYSLNSAIRT-----R----RLTSSPRFYAVP   72 (325)
Q Consensus        11 ~~~~~~~~~~~~~~~~~---~~------~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~----~~~~~p~~~~~~   72 (325)
                      ..++|.+++..+.....   .+      ....+|.|.+++.+|+|.|+|.+.+.....     .    .+..+|.+...+
T Consensus        45 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~  124 (218)
T 2rgs_A           45 VQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILP  124 (218)
T ss_dssp             EEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEEC
T ss_pred             eEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEEC
Confidence            56888877755432110   00      012368899999999999999998764321     1    334677776655


Q ss_pred             CceEecCCCeEEEEEEEEe-cCCC-eeEEeeCCeeCCCCCcEEEE-ecCCe----EEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          73 HNKICDLGDTVRFQCSVTG-QPAP-WTSWSKDGKPATPNARVTIR-EKEDL----RFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~-~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      ......+|+.++|.|.+.| +|.+ .|+|++++..+......... ..++.    ..|.|.....+|.|.|+|.+.|...
T Consensus       125 ~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          125 PPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             CCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             CChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence            5433346999999999998 6765 89999999887432111111 11221    1244544444568999999998754

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.37  E-value=1.5e-12  Score=89.73  Aligned_cols=90  Identities=22%  Similarity=0.329  Sum_probs=70.4

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.+.  + +.|++++..+....++...  .++    ....|.|.+++.+|+|.
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~--~-v~W~k~g~~~~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~   77 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKV--T-GKWYKNGVEVRPSKRITIS--HVG----RFHKLVIDDVRPEDEGD   77 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSC--E-EEEEESSCBCCCCSSCEEE--EET----TEEEEEESSCCTTTCSC
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCc--c-eEEEcCCEECcCCCCEEEE--EeC----CEEEEEECCCCcCCCEE
Confidence            4577888888889999999999999987765  5 9999999988766555433  333    34689999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |+|.|.|.  .....+.|.|.
T Consensus        78 Y~C~a~n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           78 YTFVPDGY--ALSLSAKLNFL   96 (106)
T ss_dssp             EEEEEETS--CCCCCBCEEEE
T ss_pred             EEEEEccC--CceEEEEEEEE
Confidence            99999998  33344555553

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.37  E-value=1.7e-13  Score=109.65  Aligned_cols=114  Identities=15%  Similarity=0.106  Sum_probs=77.7

Q ss_pred             CCCCCcccCCCCCCCcccccccccc---------cccccC------CCCeeE-ecCCceEecCCCeEEEEEEEEecCCC-
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI---------RTRRLT------SSPRFY-AVPHNKICDLGDTVRFQCSVTGQPAP-   95 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~---------~~~~~~------~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~p~~-   95 (325)
                      .+|.|.+++++|+|.|.|.+.+...         ....+.      .+|.+. ..|....+.+|+.++|.|.+.+.|.+ 
T Consensus        77 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~  156 (246)
T 4dzb_B           77 STLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  156 (246)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCc
Confidence            3789999999999999999975421         111221      355554 33444456679999999999886544 


Q ss_pred             -eeEEeeCCeeCCCCCcEEEEe-------cCCe----EEEEEccCCCCC-CeEEEEEEEeCCee
Q psy1095          96 -WTSWSKDGKPATPNARVTIRE-------KEDL----RFLEISEVTLED-AGLYTIKVENNYGS  146 (325)
Q Consensus        96 -~v~W~~~~~~~~~~~~~~~~~-------~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~~  146 (325)
                       .++|++++..+..........       .++.    ..|.|.....+| .|.|+|.+.|....
T Consensus       157 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          157 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             eEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence             899999999886532111000       1221    237888887778 99999999886543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.37  E-value=4.5e-12  Score=86.26  Aligned_cols=87  Identities=20%  Similarity=0.295  Sum_probs=67.7

Q ss_pred             CCeeeecCcC-eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         164 RPKVLNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       164 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      +|.|...+.+ ..+.+|+.+.|.|.+. .|.  +.+.|++++..+..+.++...  ..+    ....|.|.+++.+|+|.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~--~~v~W~k~g~~i~~~~~~~~~--~~~----~~~~L~I~~~~~~D~G~   77 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPK--LEVKWYKNGQEIRPSTKYIFE--HKG----CQRILFINNCQMTDDSE   77 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTT--SCEEEEESSCBCCCBTTEEEE--EET----TEEEEEEEEECTTTCCE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCC--ceEEEEECCEECCCCCCEEEE--ecC----CEEEEEEcCCCcCcCEE
Confidence            5667666665 5788999999999997 565  899999999888765544332  333    34589999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |+|.|    +.....+.|.|.
T Consensus        78 Y~C~a----g~~~~~~~l~V~   94 (100)
T 2yuv_A           78 YYVTA----GDEKCSTELFVR   94 (100)
T ss_dssp             EEEEE----TTEEEEEEEEEC
T ss_pred             EEEEE----CCceEEEEEEEe
Confidence            99999    667777778774

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.6e-12  Score=88.12  Aligned_cols=90  Identities=19%  Similarity=0.356  Sum_probs=67.8

Q ss_pred             CCeeeecCcC---eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         164 RPKVLNGLEN---LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       164 ~p~~~~~~~~---~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      +|.+...+..   ..+.+|+.+.|.|.+.+.+.  + +.|++++..+....++...  ..+    ....|.|.+++.+|+
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~--~-v~W~k~g~~~~~~~~~~~~--~~~----~~~~L~I~~~~~~D~   77 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDF--P-ATWYKDGQKVEESELLVVK--MDG----RKHRLILPEAKVQDS   77 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTC--C-CEEEETTEECCCBTTBEEE--EET----TEEEEEESSCCTTTC
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCC--c-cEEeeCCEECCCCCCEEEE--eCC----CEEEEEECCCChhhC
Confidence            3455555555   67899999999999988877  6 9999999988766554333  333    346899999999999


Q ss_pred             eEEEEEEEeCCCcEEeEEEEEEEeeC
Q psy1095         241 GEFTCRVANELGEVVTSACLIVDVVK  266 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~~~~l~v~~~~  266 (325)
                      |.|+|.+.|..+    .+.|.|...+
T Consensus        78 G~Y~C~a~n~~~----~~~l~V~~~P   99 (104)
T 2e6p_A           78 GEFECRTEGVSA----FFGVTVQDPS   99 (104)
T ss_dssp             EEEEEECSSCCC----CEEEEEECCC
T ss_pred             EEEEEEECCceE----EEEEEEcCCC
Confidence            999999988633    5666665443

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.36  E-value=5.3e-13  Score=104.52  Aligned_cols=114  Identities=15%  Similarity=0.177  Sum_probs=73.7

Q ss_pred             CCCCCcccCCCCCCCcccccccccc--------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI--------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTS   98 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~--------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~   98 (325)
                      .+|+|++++++|+|.|.|.+.+...        ..+.+.    .+|.+...+....+.+|+.++|.|.+.+. |.| .+.
T Consensus        78 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  157 (215)
T 1c5d_H           78 VFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVT  157 (215)
T ss_dssp             EEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEE
Confidence            3789999999999999999977531        112222    34666554433346789999999999886 877 999


Q ss_pred             EeeCCeeCCCCCcEEEEecCCeEEE--EEccCCCCCCeEEEEEEEeCCeeEE
Q psy1095          99 WSKDGKPATPNARVTIREKEDLRFL--EISEVTLEDAGLYTIKVENNYGSVE  148 (325)
Q Consensus        99 W~~~~~~~~~~~~~~~~~~~~~~~l--~i~~~~~~d~G~Y~C~~~~~~~~~~  148 (325)
                      |++++..+........... +...+  .+.....+| |.|+|.+.|..+...
T Consensus       158 W~~~g~~~~~~~~~~~~~~-g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~  207 (215)
T 1c5d_H          158 WNSGALSSDVHTFPAVLQS-GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTK  207 (215)
T ss_dssp             EGGGTTCCSCCBCCCEEET-TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEE
T ss_pred             EccCCccCceEecCcccCC-CCEEEEEEEecccCCC-CeEEEEEEeCCCCcc
Confidence            9998865432111111111 22221  123344356 999999999877543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.35  E-value=3.3e-12  Score=89.06  Aligned_cols=99  Identities=23%  Similarity=0.430  Sum_probs=73.1

Q ss_pred             EEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEE
Q psy1095         149 ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIA  228 (325)
Q Consensus       149 ~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (325)
                      ..+.|.|...     +|.+...+....+.+|+.+.|.|.+.+.    +.+.|++++..+..+.++...  .++    ...
T Consensus         9 ~~~~l~V~~~-----pp~~~~~~~~~~v~~G~~v~l~C~~~~~----p~v~W~k~~~~l~~~~~~~~~--~~~----~~~   73 (113)
T 2edh_A            9 TSAMLTVRAL-----PIKFTEGLRNEEATEGATAVLRCELSKM----APVEWWKGHETLRDGDRHSLR--QDG----ARC   73 (113)
T ss_dssp             CCCCCCCCCS-----CCCEEECCCCCEECTTSCEEEEEEESSC----CCCEEEESSSBCCCSSSEEEE--EET----TEE
T ss_pred             EEEEEEEEcC-----CCcccccCCceEEeCCCeEEEEEEECCC----CcEEEEECCEECCCCCcEEEE--ECC----CEE
Confidence            3444555443     3566666777889999999999999653    569999999988765544333  333    346


Q ss_pred             EEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeC
Q psy1095         229 RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK  266 (325)
Q Consensus       229 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~  266 (325)
                      .|.|.+++.+|+|.|+|.|    +.....+.|.|...+
T Consensus        74 ~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p  107 (113)
T 2edh_A           74 ELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMP  107 (113)
T ss_dssp             EEEECSCCSTTCEEEEEEE----TTEEEEEEEEECCCC
T ss_pred             EEEECCCChhhCEEEEEEe----CCCCEEEEEEEeCCC
Confidence            8999999999999999999    677777888884433

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.34  E-value=5.5e-14  Score=99.65  Aligned_cols=93  Identities=19%  Similarity=0.349  Sum_probs=70.3

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCe-eEEeeCCEEeccC--CCCceEEEecCCcceeEEEEEeCCCCCCCC-
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD-ISWFRNNRLIKLD--SDMKPEVQVDSKENLVIARLKIPHVYPEDE-  240 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~-~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-  240 (325)
                      |.+.. +....+.+|+.+.|.|.+.+.|.  +. +.|++++..+...  .++.......+  ....+.|.|.+++.+|. 
T Consensus        15 P~i~~-~~~~~~~~G~~v~l~C~~~g~P~--p~~i~W~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~~   89 (122)
T 2cry_A           15 PIISS-TQTQHALHGEKGQIKCFIRSTPP--PDRIAWSWKENVLESGTSGRYTVETISTE--EGVISTLTISNIVRADFQ   89 (122)
T ss_dssp             CCEEE-ECCCCCCTTSCCCCCEEECCSSC--CSEEEEESSSCEECSEEETTEEEEEEEET--TEEEEEEECTTCCHHHHH
T ss_pred             CCccC-CCeEEEecCCCEEEEEEEeecCC--CcEeEEEECCEEccCCCCCCEEEEEecCC--CceEEEEEEcCCChhhCC
Confidence            55555 56677889999999999999988  65 9999999887642  22222111111  11256899999999999 


Q ss_pred             eEEEEEEEeCCCcEEeEEEEEE
Q psy1095         241 GEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |.|+|.|.|..|.....+.|.|
T Consensus        90 G~Y~C~a~N~~G~~~~~~~l~V  111 (122)
T 2cry_A           90 TIYNCTAWNSFGSDTEIIRLKE  111 (122)
T ss_dssp             SCEEEEEECSSCEEEEEECCCC
T ss_pred             ceEEEEEECCCCeEEEEEEEEE
Confidence            9999999999999887777776

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.34  E-value=1.8e-11  Score=94.97  Aligned_cols=163  Identities=17%  Similarity=0.195  Sum_probs=104.2

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---C-C--C------CCcEEEEe--cCCeEEEEEccCCC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---A-T--P------NARVTIRE--KEDLRFLEISEVTL  130 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---~-~--~------~~~~~~~~--~~~~~~l~i~~~~~  130 (325)
                      .+.+.|....+.+|++++|.|.+.+...+.+.|||..  ..   + .  .      ..++....  .....+|.|.+++.
T Consensus         5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   84 (210)
T 2eys_A            5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   84 (210)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             eEEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCc
Confidence            3556677888999999999999977666689999842  11   1 1  1      23455432  23457899999999


Q ss_pred             CCCeEEEEEEEeCC---e--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE
Q psy1095         131 EDAGLYTIKVENNY---G--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR  205 (325)
Q Consensus       131 ~d~G~Y~C~~~~~~---~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~  205 (325)
                      +|+|.|.|.+.+..   .  .......|.|..... ...|.+......     .+.++|.|.+.++.+. +.+.+..++.
T Consensus        85 ~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~-~~~P~V~~~~~~-----~~~~tl~Cl~~gf~P~-~~v~~~~~~~  157 (210)
T 2eys_A           85 SDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQ-NPDPAVYQLRDS-----KSSDKSVCLFTDFDSQ-TNVSQSKDSD  157 (210)
T ss_dssp             GGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCS-SCCCEEEEECCC-----SSSSCEEEEEESCCTT-CCCCCCSSTT
T ss_pred             ccCceEEEEEEccCCCcccceECCCEEEEEECCCC-CCCCeEEecCCC-----CCCceEEEEcccccCC-cEeccccCcc
Confidence            99999999997632   1  111234667764321 123554433221     2378999999998875 5543322111


Q ss_pred             EeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         206 LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      .         .. ..      ...|.+..+...+.|.|.|.+.+..+
T Consensus       158 ~---------~~-t~------~~~l~~~~~~~~~~~~~~w~~~~~~~  188 (210)
T 2eys_A          158 V---------YI-TD------KCVLDMRSMDFKSNSAVAWSNKSDFA  188 (210)
T ss_dssp             E---------EE-CC------CEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred             e---------Ec-cC------chhcchhcccccccchhhccCCCceE
Confidence            1         00 11      14678888888899999998877554

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.3e-12  Score=88.23  Aligned_cols=83  Identities=20%  Similarity=0.448  Sum_probs=65.3

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.  +.+.|++++..+.....               ..|.|.+++.+|+|.
T Consensus         9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~--~~v~W~k~~~~~~~~~~---------------~~L~i~~v~~~d~G~   71 (96)
T 2ens_A            9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPS--PQIHWMKDGVPLPLPPS---------------PVLILPEIGPQDQGT   71 (96)
T ss_dssp             CSCCCEEESTTSEECTTCEEEEECCCSSCSS--CCCCCEESSSBCSSCCC---------------SEEEEESCCTTTCEE
T ss_pred             CCCEEEECCCCCEEcCCCeEEEEEEEccCCC--CEEEEEECCEECcCCCC---------------CEEEECCCCcccCEE
Confidence            4566777777778999999999999988887  78999999887754321               379999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |+|.+.|..+....+..+.+
T Consensus        72 Y~C~a~n~~~~~~~s~~~~v   91 (96)
T 2ens_A           72 YSCVATHSSHGPQESRAVSI   91 (96)
T ss_dssp             EECEECCSSCCCEECCCEEE
T ss_pred             EEEEEEeCCCCcEEEEEEEE
Confidence            99999997655444433433

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.33  E-value=3.4e-13  Score=107.46  Aligned_cols=114  Identities=13%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             CCCCCCcccCCCCCCCcccccccc--c------cccccc------CCCCeeEe-cCCceEecCCCeEEEEEEEEe-cCCC
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNS--A------IRTRRL------TSSPRFYA-VPHNKICDLGDTVRFQCSVTG-QPAP   95 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~--~------~~~~~~------~~~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~p~~   95 (325)
                      ..+|.|++++++|+|.|.|.+.+.  .      .....+      ..+|.+.. .|....+.+|+.++|.|.+.+ .|.+
T Consensus        74 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  153 (240)
T 3q5y_A           74 HSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDH  153 (240)
T ss_dssp             CEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCC
Confidence            446899999999999999999621  1      011111      14555543 344445667999999999988 6666


Q ss_pred             -eeEEeeCCeeCCCCCcEE---EEecCCe----EEEEEccCCCCC-CeEEEEEEEeCCe
Q psy1095          96 -WTSWSKDGKPATPNARVT---IREKEDL----RFLEISEVTLED-AGLYTIKVENNYG  145 (325)
Q Consensus        96 -~v~W~~~~~~~~~~~~~~---~~~~~~~----~~l~i~~~~~~d-~G~Y~C~~~~~~~  145 (325)
                       .+.|+++|..+.......   ....++.    ..|.|.....+| .|.|+|.+.+...
T Consensus       154 ~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          154 VELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             eEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence             789999999886532211   1112222    238888888888 6799999988654

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.33  E-value=1.4e-11  Score=85.00  Aligned_cols=95  Identities=19%  Similarity=0.309  Sum_probs=68.0

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE-EeccCC-----CCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR-LIKLDS-----DMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      .|.+...+....+.+|+.+.|.|.+.+.+.  +.+.|++++. .+....     ..+.......   .....|.|.+++.
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~I~~v~~   80 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDN--TSLQWSNPAQQTLYFDDKKALRDNRIELVRAS---WHELSISVSDVSL   80 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEESSCSS--CCEEEECTTCCEEEETTEECSCCTTEEEEEES---SSEEEEEECSCCG
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEEcCCCc--cEEEEEcCCCceEEEcCCcccccCcEEEeecC---CCcEEEEECCCCh
Confidence            355566667888999999999999998876  7899999775 222211     0111111110   0357899999999


Q ss_pred             CCCeEEEEEEEeCCCcEEeEEEEEEEe
Q psy1095         238 EDEGEFTCRVANELGEVVTSACLIVDV  264 (325)
Q Consensus       238 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~  264 (325)
                      +|+|.|+|.+.| .+.....+.|.|..
T Consensus        81 ~D~G~Y~C~~~n-~~~~~~~~~L~V~~  106 (108)
T 3m45_A           81 SDEGQYTCSLFT-MPVKTSKAYLTVLG  106 (108)
T ss_dssp             GGCEEEEEEECS-SSCEEEEEEEEEEC
T ss_pred             hHCeEEEEEEEc-CCCcEEEEEEEEEc
Confidence            999999999999 88888888888753

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.33  E-value=1.4e-11  Score=84.29  Aligned_cols=87  Identities=20%  Similarity=0.336  Sum_probs=65.5

Q ss_pred             CCCeeeecCcC-eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC-CCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         163 SRPKVLNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD-SDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       163 ~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      .+|.|...+.. ..+.+|+.+.|.|.+ +.|.  +.+.|++++..+..+ .++...  .++    ....|.|.+++.+|+
T Consensus        14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~--~~v~W~k~g~~l~~~~~~~~~~--~~~----~~~~L~I~~v~~~D~   84 (104)
T 1pd6_A           14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHD--AEVKWLKNGQEIQMSGSKYIFE--SIG----AKRTLTISQCSLADD   84 (104)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEEC-SSSS--SCCEEEESSSEECCCSSSSEEE--EET----TEEEEEECSCSSSSC
T ss_pred             CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCC--CEEEEEECCEECCCCCCeEEEE--ecC----CEEEEEECCCCcccC
Confidence            34666666656 679999999999999 5666  789999999988765 443322  333    246899999999999


Q ss_pred             eEEEEEEEeCCCcEEeEEEEEE
Q psy1095         241 GEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |.|+|.+    +.....+.|.|
T Consensus        85 G~Y~C~a----~~~~~~~~l~V  102 (104)
T 1pd6_A           85 AAYQCVV----GGEKCSTELFV  102 (104)
T ss_dssp             EEEEEEE----TTEEECCEEEE
T ss_pred             EEEEEEE----CCCcEEEEEEE
Confidence            9999999    44555566665

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.33  E-value=8.4e-13  Score=106.49  Aligned_cols=113  Identities=16%  Similarity=0.189  Sum_probs=75.1

Q ss_pred             CCCCCcccCCCCCCCcccccccccc--------cccccC----CCCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeE
Q psy1095          33 RSTPPRSISPLSSRTFTPYSLNSAI--------RTRRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTS   98 (325)
Q Consensus        33 ~~l~i~~v~~~d~G~Y~c~~~~~~~--------~~~~~~----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~   98 (325)
                      .+|+|++++++|+|.|.|.+.+...        ..+.+.    .+|.+...+....+.+|+.++|.|.+.+. |.+ .|.
T Consensus        85 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~  164 (261)
T 2xqy_G           85 VYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  164 (261)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEE
Confidence            4789999999999999999977421        112222    34666544433346789999999999884 776 999


Q ss_pred             EeeCCeeCCCCCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          99 WSKDGKPATPNARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        99 W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      |++++..+.......+...+   ....|.|.....+| |.|+|.+.|....
T Consensus       165 W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          165 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             EGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            99998765311000011111   12458898888878 9999999986543

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.33  E-value=5.4e-13  Score=105.77  Aligned_cols=121  Identities=13%  Similarity=0.210  Sum_probs=74.7

Q ss_pred             CCCCcccCCCCCCCccccccccc-----------c--ccccc----CCCCeeEecCCceEecCCCeEEEEEEEEec-C-C
Q psy1095          34 STPPRSISPLSSRTFTPYSLNSA-----------I--RTRRL----TSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-A   94 (325)
Q Consensus        34 ~l~i~~v~~~d~G~Y~c~~~~~~-----------~--~~~~~----~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~   94 (325)
                      +|+|.+++++|+|.|.|.+.+..           .  ....+    ..+|.+...+....+..|+.++|.|.+.+. | .
T Consensus        84 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~  163 (232)
T 3qhz_H           84 VLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  163 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSC
T ss_pred             EEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCC
Confidence            58899999999999999997541           1  11222    246666644444456679999999999874 4 3


Q ss_pred             CeeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095          95 PWTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus        95 ~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      ..+.|++++..+...........++    ...|.|......| |.|+|.+.+..+.......|.+
T Consensus       164 ~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             CEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             eEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            3578999886432110000111111    1358888888888 9999999998765555544443

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.7e-12  Score=88.57  Aligned_cols=89  Identities=20%  Similarity=0.290  Sum_probs=67.5

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC--ceEEEecCCcceeEEEEEeCCCCCCCCe
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM--KPEVQVDSKENLVIARLKIPHVYPEDEG  241 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G  241 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.+   +.+.|++++..+......  +......+    ....|.|.+++.+|+|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~---~~v~W~k~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G   80 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG---AQVMWMKNGVELTREDSFKARYRFKKDG----KRHILIFSDVVQEDRG   80 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS---CCCEEEESSCBCCCSCCSSCCCEEEECS----SEEEEECSSCCGGGCS
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC---CEEEEEECCEECCCCCCcceeEEEEECC----CEEEEEECCCChhhCE
Confidence            46677777778899999999999998765   579999999988766533  22333444    3568999999999999


Q ss_pred             EEEEEEEeCCCcEEeEEEEEEE
Q psy1095         242 EFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       242 ~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      .|+|.|.|    ....+.|.|.
T Consensus        81 ~Y~C~a~n----~~~~~~l~V~   98 (101)
T 2edk_A           81 RYQVITNG----GQCEAELIVE   98 (101)
T ss_dssp             BEEEECSS----CEECCBEEEE
T ss_pred             EEEEEEcC----CcEEEEEEEe
Confidence            99999976    3344556653

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.32  E-value=6.1e-12  Score=88.41  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=63.8

Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC  259 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  259 (325)
                      ....|.|.+.|.|.  +.+.|++++..+.............  .....+.|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus        21 ~~~~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~   96 (118)
T 1wwc_A           21 LEHCIEFVVRGNPP--PTLHWLHNGQPLRESKIIHVEYYQE--GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN   96 (118)
T ss_dssp             CEEEEEEEEECSSC--CEEEEEETTEECCCSSSEEEEEEEC--SSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cceEEEEEeeeeCC--CeEEEEECCEECCCCCceeEEEecc--CccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEE
Confidence            56789999999888  8999999999987665443332221  1123568999999999999999999999999988888


Q ss_pred             EEEEe
Q psy1095         260 LIVDV  264 (325)
Q Consensus       260 l~v~~  264 (325)
                      |.|..
T Consensus        97 l~v~~  101 (118)
T 1wwc_A           97 GHFLK  101 (118)
T ss_dssp             ECCSC
T ss_pred             EEEcc
Confidence            87643

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.6e-11  Score=84.49  Aligned_cols=91  Identities=21%  Similarity=0.354  Sum_probs=69.1

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC--------ceEEEecCCcceeEEEEEeCCC
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM--------KPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      ++.+...+.+..+.+|+.+.|.|.+.+  .  +.+.|++||.++..+...        +.....++    ....|.|.++
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~--p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g----~~~~L~I~~v   79 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--I--IQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKG----LQHRLILHAV   79 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--C--CCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBT----TEEEEEEESC
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--C--CeEEEEECCEECccCcccccccccccEEEEEeCC----cEEEEEECCC
Confidence            467888888999999999999999986  3  689999999999766411        22222333    3568999999


Q ss_pred             CCCCCeEEEEEEEeCCCcEEeEEEEEEEee
Q psy1095         236 YPEDEGEFTCRVANELGEVVTSACLIVDVV  265 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~  265 (325)
                      +.+|+|.|+|...+   ....++.|.|...
T Consensus        80 ~~~D~G~Y~~~~~~---~~~ssA~L~V~~~  106 (112)
T 2e6q_A           80 KHQDSGALVGFSCP---GVQDSAALTIQES  106 (112)
T ss_dssp             CSTTCSEEEEEEET---TEEEEEEEEEECS
T ss_pred             CHHHCccEEEEEEC---CeeEEEEEEEeCC
Confidence            99999999875443   3456788888543

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.32  E-value=1.1e-11  Score=90.50  Aligned_cols=92  Identities=18%  Similarity=0.264  Sum_probs=72.0

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEe---------eCCeeCCCCCcEEEE-ecCCeEEEEEccCCCCCCeE
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWS---------KDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGL  135 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~---------~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~  135 (325)
                      ..+...|....+.+|++++|.|.+.+.+.+.+.|+         +++..+. ..++... ......+|.|.+++.+|+|.
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~-~~r~~~~~~~~~~~~L~I~~v~~~DsG~  117 (145)
T 1z9m_A           39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALR-DNRIQLVTSTPHELSISISNVALADEGE  117 (145)
T ss_dssp             CTTCCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSC-CTTEEEEEECSSEEEEEECSCCGGGCEE
T ss_pred             cceecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecc-cCCEEEecCCCCeEEEEECCCChhhCEE
Confidence            34455677888999999999999988888899999         4444333 3455533 23446789999999999999


Q ss_pred             EEEEEEeCCeeEEEEEEEEEECCC
Q psy1095         136 YTIKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       136 Y~C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      |+|.+.|. +.....+.|.|..+|
T Consensus       118 Y~C~~~n~-~~~~~~~~L~V~~~P  140 (145)
T 1z9m_A          118 YTCSIFTM-PVRTAKSLVTVLGIP  140 (145)
T ss_dssp             EEEEECSS-SCEEEEEEEEEECCC
T ss_pred             EEEEEEcC-CCceEEEEEEEEeCC
Confidence            99999998 777888889988763

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.32  E-value=4.2e-13  Score=108.84  Aligned_cols=114  Identities=11%  Similarity=0.041  Sum_probs=76.0

Q ss_pred             CCCCCCcccCCCCCCCccccccccc-------ccccccC------CCCeeEe-cCCceEecCCCeEEEEEEEEecCC-C-
Q psy1095          32 PRSTPPRSISPLSSRTFTPYSLNSA-------IRTRRLT------SSPRFYA-VPHNKICDLGDTVRFQCSVTGQPA-P-   95 (325)
Q Consensus        32 ~~~l~i~~v~~~d~G~Y~c~~~~~~-------~~~~~~~------~~p~~~~-~~~~~~v~~g~~v~l~C~~~~~p~-~-   95 (325)
                      ..+|.|++++++|+|.|.|.+.+..       .....+.      .+|.+.. .+....+.+|+.++|.|.+.+.+. + 
T Consensus        99 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  178 (268)
T 3pl6_D           99 VSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  178 (268)
T ss_dssp             SEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCe
Confidence            4568999999999999999997631       1112222      2565543 344445667999999999988554 4 


Q ss_pred             eeEEeeCCeeCCCCCcEEE-------EecCC----eEEEEEccCCCCC-CeEEEEEEEeCCe
Q psy1095          96 WTSWSKDGKPATPNARVTI-------REKED----LRFLEISEVTLED-AGLYTIKVENNYG  145 (325)
Q Consensus        96 ~v~W~~~~~~~~~~~~~~~-------~~~~~----~~~l~i~~~~~~d-~G~Y~C~~~~~~~  145 (325)
                      .++|+++|..+........       ...++    ...|.|.....+| .|.|+|.+.+...
T Consensus       179 ~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          179 ELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             EEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence            8999999988754321100       00111    1346777776676 9999999988654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.32  E-value=2.6e-11  Score=108.39  Aligned_cols=92  Identities=27%  Similarity=0.489  Sum_probs=86.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      ..|.+...+....+.+|+++.|.|.+.|.|.|.++|++++.++..+.++.+...+...+|.|.++..+|+|.|+|++.|.
T Consensus       481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~  560 (573)
T 3uto_A          481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS  560 (573)
T ss_dssp             GSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeC
Confidence            56888888888899999999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             CeeEEEEEEEEE
Q psy1095         144 YGSVEATARLEI  155 (325)
Q Consensus       144 ~~~~~~~~~l~v  155 (325)
                      .|..+..+.|.|
T Consensus       561 ~G~~~~~v~l~V  572 (573)
T 3uto_A          561 YGTKEEIVFLNV  572 (573)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            999999888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-18
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-12
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-15
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-15
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-11
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	9e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	8e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.001
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-14
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-10
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	7e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-11
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-12
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	7e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	6e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	9e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	9e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	8e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-11
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-10
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	8e-10
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	7e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	9e-10
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	7e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	6e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-09
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-09
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-09
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.002
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	9e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	7e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-08
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	5e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	9e-08
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	6e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.003
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	0.001
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.001
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	5e-07
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	1e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	6e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	5e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.004
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	3e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	6e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	8e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	9e-06
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	6e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	1e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-05
d1i1ca2	102	b.1.1.2 (A:342-443) Immunoglobulin heavy chain gam	3e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	3e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-04
d1q0xl2	102	b.1.1.2 (L:108-212) Immunoglobulin light chain lam	5e-05
d1l6xa2	102	b.1.1.2 (A:342-443) Immunoglobulin heavy chain gam	5e-05
d1nfde2	104	b.1.1.2 (E:108-215) Immunoglobulin light chain lam	1e-04
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	1e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	1e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	4e-04
d1o0va1	104	b.1.1.2 (A:228-330) Immunoglobulin heavy chain eps	3e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	4e-04
d1mjul2	107	b.1.1.2 (L:108-214) Immunoglobulin light chain kap	5e-04
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	6e-04
d1igtb4	102	b.1.1.2 (B:363-474) Immunoglobulin heavy chain gam	8e-04
d1c5cl2	107	b.1.1.2 (L:108-214) Immunoglobulin light chain kap	0.001
d1d5mb1	98	b.1.1.2 (B:93-190) Class II MHC beta chain, C-term	0.001
d1ogae2	127	b.1.1.2 (E:119-245) T-cell antigen receptor {Human	0.001
d1rzfl2	102	b.1.1.2 (L:109-210) Immunoglobulin light chain lam	0.002
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.002
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.003
d1fp5a2	105	b.1.1.2 (A:439-543) Immunoglobulin heavy chain eps	0.003
d1uvqb1	97	b.1.1.2 (B:95-191) Class II MHC beta chain, C-term	0.003
d1cqka_	101	b.1.1.2 (A:) Immunoglobulin heavy chain gamma cons	0.003
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 3e-18
 Identities = 25/93 (26%), Positives = 39/93 (41%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P+    P ++    G++V     VTG      +W K  K    +  + +   E+   L I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
                E  G YT+ VEN  GS +A   L ++D 
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P+++   E+ +   G+SV    +V    P     +W +  + I+    MK E   +  + 
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQP--ITCTWMKFRKQIQESEHMKVENSENGSK- 57

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                L I     E  G +T  V N+LG       L V
Sbjct: 58  -----LTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 270 LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           +     + +      S LTI     +  G Y + V N+ GS     ++ V  +
Sbjct: 41  IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.8 bits (167), Expect = 2e-15
 Identities = 25/93 (26%), Positives = 40/93 (43%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           PRF   P+      G +  F C V     P  +W KD +    + +   R   +   L I
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
           + V  +D G YT++ +N+YG+ E    L +   
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 94

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.3 bits (132), Expect = 1e-10
 Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 8/99 (8%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           +P+ +         +G S  F C+V    P               +    +         
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG-- 58

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                 L I  V  +D+GE+T R  N  G       L V
Sbjct: 59  ------LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 275 RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
           +      G    LTI  + GDD G+Y V   N +G+      + V   
Sbjct: 47  KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 94

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 67.9 bits (165), Expect = 3e-15
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 64  SSPRFYAVPHNKIC-DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
           S+P++   P   I    G  V   C VTG PAP   WS + KP +   R T+ +      
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTD----SG 55

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           L I  V   D G Y  +  N +G       +++
Sbjct: 56  LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 52.1 bits (124), Expect = 1e-09
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 13/84 (15%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G  VT  C+V  +P    ++ W  N +                +  +  + L I  V   
Sbjct: 18  GQDVTIPCKVTGLPA--PNVVWSHNAK-----------PLSGGRATVTDSGLVIKGVKNG 64

Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
           D+G + CR  NE G+      + V
Sbjct: 65  DKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 287 LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           L I+ +   D G Y    +N+HG       V V
Sbjct: 56  LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 3e-15
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 59  TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE 118
           T       R +AVP        +TV+F+C   G P P   W K+GK      R+   +  
Sbjct: 5   TNTEKMEKRLHAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 58

Query: 119 DLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
           +  + L +  V   D G YT  VEN YGS+  T  L+++
Sbjct: 59  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 2e-11
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            ++V F C     P     + W +N +  K +  +      +         L +  V P 
Sbjct: 20  ANTVKFRCPAGGNPM--PTMRWLKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVVPS 72

Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
           D+G +TC V NE G +  +  L V
Sbjct: 73  DKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 9e-05
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
                L +E +   D G Y   V N++GS +    + V
Sbjct: 59  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.1 bits (155), Expect = 8e-14
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P +  V  +   D+G  +R+ C  +G+P P   W +DG+P     R+ +        L  
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRF 57

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           S++ LED+G+Y    EN +G+V A+A L +
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.3 bits (132), Expect = 1e-10
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 12/99 (12%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           +P  L+ + +     G  + + C     P               +   ++          
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG------- 53

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                 L+   +  ED G + C   N+ G V  SA L V
Sbjct: 54  -----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 287 LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
           L    +  +DSG YQ    N+HG+    A + V+
Sbjct: 55  LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 9e-14
 Identities = 28/89 (31%), Positives = 42/89 (47%)

Query: 67  RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEIS 126
           R    P +     G++ RF C   G+P P  +W + G+  + +AR  +   +     EIS
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 127 EVTLEDAGLYTIKVENNYGSVEATARLEI 155
            V   D G Y++ VEN+ G  EA   L I
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 5e-10
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 8/97 (8%)

Query: 166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL 225
           ++L    ++   +G+S  F C     P                    +       + E  
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEI- 59

Query: 226 VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                    V   DEG ++  V N  G+      L +
Sbjct: 60  -------SSVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 288 TIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
            I  +   D G Y V V N  G      ++ ++
Sbjct: 58  EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 61.8 bits (149), Expect = 7e-13
 Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
           P F     +     G   RF C V G P P   W KD  P   +    I   E+    L 
Sbjct: 9   PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 68

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           ISEV  +D   YT K  N+ G    TA L +
Sbjct: 69  ISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 56.1 bits (134), Expect = 8e-11
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           +P     + ++   +G +  F+C+V+  P  +       N         +  + + +   
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
                   I  V  +D+ ++TC+  N LGE   +A L+V+ +
Sbjct: 68  -------TISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 102

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 19/44 (43%)

Query: 277 NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
                 G   LTI ++ GDD  KY     N  G  +C A + VE
Sbjct: 57  IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 1e-12
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P+ +    ++    G    F+  V G+P P   W K+G     + R+     ED     +
Sbjct: 5   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 64

Query: 126 -SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
             +VT ED+    +K  N  G   + A L +
Sbjct: 65  IRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 2e-10
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           PK+   +++     G    F  +V   P    +  W++N   I+    +      D+   
Sbjct: 5   PKIFERIQSQTVGQGSDAHFRVRVVGKPD--PECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           LVI       V  ED      +  N  GE  + A L+V
Sbjct: 63  LVI-----RDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 284 TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
              L I D+TG+DS    V   N  G  S +A + V+ +
Sbjct: 60  VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.1 bits (142), Expect = 7e-12
 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT--IREKEDLRFLEISEVT 129
             N   +LG +V   C   G P P  SW+KDG+P              +D   L I  V 
Sbjct: 12  IVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVD 71

Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMD 157
             D   Y    EN  G  +A+  L++  
Sbjct: 72  KNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 6e-09
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
           P  + +R  ++N   NL    G SVT  C     P     +SW ++   I+ + +   + 
Sbjct: 3   PPTVQARQSIVNATANL----GQSVTLVCDADGFPE--PTMSWTKDGEPIENEEEDDEKH 56

Query: 218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                     + L I +V   DE E+ C   N+ GE   S  L V
Sbjct: 57  IFSDD----SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (89), Expect = 9e-05
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 277 NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
             I    +S LTI ++  +D  +Y     N+ G       + V  +
Sbjct: 55  KHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 9e-12
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 13/99 (13%)

Query: 71  VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-------------ATPNARVTIREK 117
           +P N    +G  V F C V     P   W K  +                  A       
Sbjct: 11  LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTD 70

Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
           +++  L I  VT EDAG YT    N+ G    +A L ++
Sbjct: 71  KEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 8e-11
 Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 163 SRPKVLNGL-ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
            RP +  GL  N     G  V F C+V                   K   D  P ++V  
Sbjct: 3   HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 222 KENLVI-----ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              +         L I +V  ED GE+TC   N +G    SA L V
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 19/115 (16%)

Query: 214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSD 273
           +P +Q     N               + EF C+V ++    +    +      G     D
Sbjct: 4   RPILQAGLPANAS--------TVVGGDVEFVCKVYSDAQPHIQ--WIKHVEKNGSKYGPD 53

Query: 274 GRLNI---------ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
           G   +          T     VL I ++T +D+G+Y     N  G     A + V
Sbjct: 54  GLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 29/115 (25%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--------------------- 110
           P   +   G+ +R    ++G PAP   W K                              
Sbjct: 16  PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 75

Query: 111 --------RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
                   RV +   +D     +     ED G+YT+ V+N  G  +    ++++D
Sbjct: 76  KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 20/158 (12%), Positives = 38/158 (24%), Gaps = 36/158 (22%)

Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
           I         + +    G+ +  +  +   P       W +                 + 
Sbjct: 7   IHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTV--IWQKAITQGNKAPARPAPDAPED 64

Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITV 281
             +          +                                    ++GR+ + T 
Sbjct: 65  TGDSDEWVFDKKLL----------------------------------CETEGRVRVETT 90

Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
              S+ T+E    +D G Y V V N  G D    +V V
Sbjct: 91  KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (128), Expect = 4e-10
 Identities = 18/90 (20%), Positives = 30/90 (33%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P+            G T   +    G P P  +W+     A     + +  K     +  
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFF 62

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
                 D+G Y +KV+N  G  EA   + +
Sbjct: 63  PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (115), Expect = 2e-08
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           +PK+L     ++   G +   E      P      +   +   +  +  +  +       
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT--- 58

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                 +  P     D G +  +V NELGE      +IV
Sbjct: 59  -----SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 5e-10
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP--NARVTIREKEDLRFLEISEVT 129
           P       G  V+  CSV G   P   W KDG          + + E+  + FL +  V 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 130 LEDAGLYTIKVENNYGSVE-ATARLEI 155
             DAG Y  +VE+   +       L +
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-08
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK 231
             L    G  V   C V+ +     DI W ++  +++    +   V        +     
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEE--PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS---- 57

Query: 232 IPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG 267
           +  V   D G + C+V +     ++    +   V+G
Sbjct: 58  LKSVERSDAGRYWCQVEDGGETEISQPVWL--TVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSD-SCYASVAVEG 321
                L+++ +   D+G+Y   V +   ++ S    + VEG
Sbjct: 51  HWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.9 bits (126), Expect = 8e-10
 Identities = 22/84 (26%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
           P +     G  V  +C   G P P   W K       +   T +       L I  V  E
Sbjct: 12  PADTYALTGQMVTLECFAFGNPVPQIKWRKL------DGSQTSKWLSSEPLLHIQNVDFE 65

Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
           D G Y  + EN  G      R+ I
Sbjct: 66  DEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 22/105 (20%), Positives = 28/105 (26%), Gaps = 20/105 (19%)

Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
           P      P     L       G  VT EC     P           ++  K  S      
Sbjct: 5   PSIKAKFPADTYALT------GQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE---- 54

Query: 218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                       L I +V  EDEG + C   N  G       +I+
Sbjct: 55  ----------PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 7e-04
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
            +L I+++  +D G Y+    N  G D+    + + 
Sbjct: 55  PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 9e-10
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPW-------TSWSKDGKPATPNARVTIREKE 118
           PR  AV  ++  + G+T    C     P          T            +R  +   +
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 119 DLRFLEISEVTLED-AGLYTIKVENNYGSVEATARLEI 155
               L I  + +E   G Y     ++ GS +A   L +
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 5e-09
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 2/99 (2%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P+V     +    +G++    C+ + VPP   D +W++             E +     +
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 225 LVIARLKIPHVYPED-EGEFTCRVANELGEVVTSACLIV 262
              + L I ++  E   G++ C   +  G       L V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 7e-06
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 226 VIARLKIPHVYPEDEGEFTCRV-ANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGT 284
           V A     H+   +     C+  +           +     K     S+ R  + +  G 
Sbjct: 5   VKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGR 64

Query: 285 SVLTIEDIT-GDDSGKYQVHVSNQHGSDSCYASVAV 319
           S L IE++    D G+Y+ + ++  GSD    ++ V
Sbjct: 65  SELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 12/106 (11%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP------------WTSWSKDGKPATPNARV 112
              F   P +    +G ++ F   V G                    SK G+    +   
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 113 TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
               K  L  L I++      G Y  +V        +   L + + 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA 109

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 6e-08
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 171 LENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS---KENLV 226
            ++     G S+TF  +V          + WF+   +       +     DS      + 
Sbjct: 11  PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70

Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
           +  L I    P   G + C V+ +     ++  L V
Sbjct: 71  LFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 11/54 (20%), Positives = 19/54 (35%)

Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
           G+ L      +  +      L I D     +G Y+  VS +   D    ++ V 
Sbjct: 54  GQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 1e-09
 Identities = 13/90 (14%), Positives = 22/90 (24%), Gaps = 1/90 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
             F   P  +    G+     C V     P   W   G+       V      +     I
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-I 60

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
             +   D G Y  +             +++
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 9/101 (8%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           +    N        +G+     C V    P      W    R + L  D++  V  ++  
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTII--WKHKGRDVILKKDVRFIVLSNNYL 58

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
                  +I  +   DEG + C         +    + V V
Sbjct: 59  -------QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 66  PRFYAVPHNKICDLG---DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
           P F   P + +   G   + V   C     P     W  +G           R       
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL-VAGDL 63

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVE-ATARL 153
           +  + V  +DAG Y     N  G+V    A L
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            + VT  C+ +  PP      W  N   +K+  D +  +            +    V  +
Sbjct: 22  EEKVTLTCRARANPP--ATYRWKMNGTELKMGPDSRYRLVAGD-------LVISNPVKAK 72

Query: 239 DEGEFTCRVANELGEVVTS 257
           D G + C   N  G VV+ 
Sbjct: 73  DAGSYQCVATNARGTVVSR 91

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 4e-09
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 16/102 (15%)

Query: 161 IISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD 220
           ++++      LE+     G+ V  EC+V        ++ WF+N   I      +  ++V+
Sbjct: 2   MVTKQ-----LEDTTAYCGERVELECEVSEDDA---NVKWFKNGEEIIPGPKSRYRIRVE 53

Query: 221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
            K++     L I      D  E++           +SA L V
Sbjct: 54  GKKH----ILIIEGATKADAAEYSVMTTGG----QSSAKLSV 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 4e-08
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV--TIREKEDLRFLEISEVT 129
             +     G+ V  +C V+        W K+G+   P  +    IR +     L I   T
Sbjct: 7   LEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 65

Query: 130 LEDAGLYTIKVENNYGSVEAT 150
             DA  Y++       S + +
Sbjct: 66  KADAAEYSVMTTGGQSSAKLS 86

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGT 284
           +V  +L+    Y  +  E  C V+ +   V                    R  I   G  
Sbjct: 2   MVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEI-----IPGPKSRYRIRVEGKK 56

Query: 285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
            +L IE  T  D+ +Y V  +    S    A ++V+ +
Sbjct: 57  HILIIEGATKADAAEYSVMTTGGQSS----AKLSVDLK 90

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 4e-09
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 85  FQCSVTGQPAPWTSWSKDGKPATPNARVTI-------REKEDLRFLEISEVTLEDAGLYT 137
              SV GQPAP   W  +G      + +          E      L +++ T  + G YT
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 138 IKVENNYGSVEATARLEIMDP 158
           +   N +G   A+     MD 
Sbjct: 80  LLAANPFGQASASIMAAFMDN 100

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 3/82 (3%)

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN-LVIARLKIPHVYPEDE 240
                 V   P     + W  N  ++   S +  E    +    +    L++      + 
Sbjct: 18  WCIPFSVDGQPA--PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75

Query: 241 GEFTCRVANELGEVVTSACLIV 262
           G +T   AN  G+   S     
Sbjct: 76  GNYTLLAANPFGQASASIMAAF 97

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 8/43 (18%), Positives = 13/43 (30%)

Query: 280 TVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
                  L +   T  ++G Y +  +N  G  S     A    
Sbjct: 58  ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 9e-09
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYP 237
           G+     C  Q   P   + +WF++  ++  +          S   N     L    +  
Sbjct: 17  GNRAVLTCSEQDGSPP-SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 75

Query: 238 EDEGEFTCRVANELGEVVTSACLIVDVV 265
            D GE++C   N  G  +TS  + ++ V
Sbjct: 76  SDTGEYSCEARNGYGTPMTSNAVRMEAV 103

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLR--- 121
           P    V       +G+     CS   G P    +W KDG     N + T           
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 122 ----FLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
                L    ++  D G Y+ +  N YG+   +  + +
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-----IREKEDLRFLEISEVTLEDAG 134
                   +V G P P   W  +G     +  +          E    L++   T  + G
Sbjct: 16  DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75

Query: 135 LYTIKVENNYGSVEATARLEIMDP 158
            YT+  +N YG  E       M  
Sbjct: 76  DYTLIAKNEYGKDEKQISAHFMGW 99

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 7e-06
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 3/84 (3%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
                    V+  P     + WF N  ++     +  ++ V          L++ +    
Sbjct: 16  DHHWCIPFTVKGNPK--PALQWFYNGAILNESKYICTKIHVT-NHTEYHGCLQLDNPTHM 72

Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
           + G++T    NE G+         
Sbjct: 73  NNGDYTLIAKNEYGKDEKQISAHF 96

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL--VIARLKIPHVY 236
           G+     C      P   + SWF++   +      K    ++S   +      L    V 
Sbjct: 17  GNRAVLTCSEHDGSPP-SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 75

Query: 237 PEDEGEFTCRVANELGEVVTSACLIVDVV 265
             D GE+ C+  N  G  + S    +D V
Sbjct: 76  AFDSGEYYCQAQNGYGTAMRSEAAHMDAV 104

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFL- 123
           P    +       +G+     CS   G P    SW KDG           R   +  F  
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 124 -------EISEVTLEDAGLYTIKVENNYGSVE--ATARLEIMD 157
                      VT  D+G Y  + +N YG+      A ++ ++
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 105

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP--NARVTIREKEDLRFL 123
           P++  V  + +   GD     C     P  + ++ K+GK        R+T   +   + L
Sbjct: 6   PQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 63

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEA-TARLEIM 156
                  ED G+YT +V+N  G  +  + +L ++
Sbjct: 64  LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.5 bits (91), Expect = 5e-05
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           GD     C     P      ++F+N + +  + + +      +       RL      PE
Sbjct: 18  GDVTMIYCMYGSNPM--GYPNYFKNGKDVNGNPEDRITRHNRTSGK----RLLFKTTLPE 71

Query: 239 DEGEFTCRVANELGEVVT-SACLIV 262
           DEG +TC V N +G+    S  L V
Sbjct: 72  DEGVYTCEVDNGVGKPQKHSLKLTV 96

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 171 LENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMK---PEVQVDSKENLV 226
            +      G+ +TF  +V+         I WF+   +       K    +   +    + 
Sbjct: 7   PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 66

Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              ++I        G + C V  +      S  L V
Sbjct: 67  TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-08
 Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 12/106 (11%)

Query: 68  FYAVPHNKICDLGDTVRFQCSVTGQPAP------------WTSWSKDGKPATPNARVTIR 115
           F   P      +G+ + F   V  +                   SK GK           
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
            +     ++I +     AG Y  +V         +  LE+ +    
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 9/53 (16%), Positives = 17/53 (32%)

Query: 271 TSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
                    +   T  + I     + +G Y+  V+ +   DSC   + V    
Sbjct: 54  QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 4e-08
 Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 5/93 (5%)

Query: 65  SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP---NARVTIREKEDLR 121
           +P F     N   + G    FQCS  G+          G                +  + 
Sbjct: 2   TPHF-LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 122 FLEISEVTLEDAGLYTIKVENNYGS-VEATARL 153
              +   T  DAG Y   +    G  +   A L
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 5e-07
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
           ++N+    G   TF+C           +     +       ++K         +  +   
Sbjct: 8   IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNV--- 64

Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTS-ACLIV 262
              +    D G++ C +  E G  +++ A L+V
Sbjct: 65  --VNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 12/86 (13%), Positives = 20/86 (23%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P     P   +    +    +C + G         K    +          ++D   L  
Sbjct: 3   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVF 62

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATA 151
                 D G Y    E   G   +  
Sbjct: 63  LRPQASDEGHYQCFAETPAGVASSRV 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 10/94 (10%), Positives = 21/94 (22%), Gaps = 8/94 (8%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P + +    +   + +    EC ++                    + +        S   
Sbjct: 3   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS--- 59

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
                L        DEG + C      G   +  
Sbjct: 60  -----LVFLRPQASDEGHYQCFAETPAGVASSRV 88

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 9e-08
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 66  PRFYAVPHNKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-- 122
           P   +  +  +  DLG  ++  C+VTGQ +    W  +G     +  V   +   +    
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 123 ----------LEISEVTLEDAG-LYTIKVENNYGSVEATARL 153
                     L ISE+        +T   +N +G   A  +L
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-06
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 6/107 (5%)

Query: 164 RPKVLNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISW----FRNNRLIKLDSDMKPEVQ 218
           RP +++     +    G  +   C V     +     W       +  +  +     E  
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 219 VDSKENLVIARLKIPHVYPEDEG-EFTCRVANELGEVVTSACLIVDV 264
            + + + +I  L I  +        FTC   N  G       LI  V
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 107

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 23/111 (20%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF---------------- 122
           +GD     C ++             +          R  +D                   
Sbjct: 16  VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES 75

Query: 123 -------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
                  L I  V   D G YT    ++    EA   L++ DP   I+  +
Sbjct: 76  IGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGR 126

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 15/99 (15%)

Query: 179 GDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR-------- 229
           GD     C++         ++ W+R+     +      + Q   +      R        
Sbjct: 17  GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 76

Query: 230 ------LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                 L+I +V   DEG +TC   +   +   +  L V
Sbjct: 77  GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 115

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 8/43 (18%), Positives = 14/43 (32%)

Query: 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
           G   L I+++   D G Y     +    +     + VE     
Sbjct: 79  GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW 121

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 85  FQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----LEISEVTLEDAGLYTIKV 140
            +  V G P P   W  +G+P   +  + +   ++       L  ++ T  + G YT+  
Sbjct: 22  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 141 ENNYGSVEATARLEIMDP 158
           +N  G+   T     +  
Sbjct: 82  KNPLGTANQTINGHFLKE 99

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 4/81 (4%)

Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
              E  V+  PP    + W  N + ++        V+   +  +    L        + G
Sbjct: 20  HCIEFVVRGNPP--PTLHWLHNGQPLR--ESKIIHVEYYQEGEISEGCLLFNKPTHYNNG 75

Query: 242 EFTCRVANELGEVVTSACLIV 262
            +T    N LG    +     
Sbjct: 76  NYTLIAKNPLGTANQTINGHF 96

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 6/43 (13%), Positives = 12/43 (27%)

Query: 280 TVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
                  L     T  ++G Y +   N  G+ +   +      
Sbjct: 57  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 17/95 (17%), Positives = 24/95 (25%), Gaps = 15/95 (15%)

Query: 66  PRFYAV--PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
           PR      P N            C   G P P     KDG    P        +      
Sbjct: 3   PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTR------ 56

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
                  +  G Y  +  +  G V     + ++ P
Sbjct: 57  -------DLEGTYLCRARSTQGEVTREVTVNVLSP 84

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 21/91 (23%)

Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK 231
            N    +    T  CQ    P    ++   ++        +                   
Sbjct: 12  GNWTWPENSQQTPMCQAWGNPL--PELKCLKDGTFPLPIGE------------------- 50

Query: 232 IPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              V  + EG + CR  +  GEV     + V
Sbjct: 51  SVTVTRDLEGTYLCRARSTQGEVTREVTVNV 81

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 2e-07
 Identities = 13/102 (12%), Positives = 37/102 (36%)

Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
           +  V     +++  + +S+   C          +  + + +    +  + +       + 
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
               + +    V  +D GE+TC V+ E G+      + + V+
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF--------LEISEVTLE 131
            ++++  C+ +G  +P   W       T       +               +  S VT +
Sbjct: 16  NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK 75

Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
           D G YT  V    G       + +
Sbjct: 76  DNGEYTCMVSEEGGQNYGEVSIHL 99

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 10/99 (10%), Positives = 22/99 (22%), Gaps = 6/99 (6%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTG---QPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
            R    P      +G  +  +C V G   +        +  K      R     +     
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK---REPAVGEPAEVT 61

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
             +          ++ + E +              P  +
Sbjct: 62  TTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQL 100

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 10/99 (10%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKE 223
            +V           G  +T  CQV+   P     +   R  + +K +  +    +V    
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEV---- 60

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
                   +         +F+CR   +L           
Sbjct: 61  -----TTTVLVRRDHHGAQFSCRTELDLRPQGLELFENT 94

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 6e-07
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P +++  +      G+    +C ++  PP D    W     +++  +  +  V+  S E 
Sbjct: 7   PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIA-WSWKENVLESGTSGRYTVETISTEE 65

Query: 225 LVIARLKIPHVYPE-DEGEFTCRVANELGEVVTSACLIV 262
            VI+ L I ++     +  + C   N  G       L  
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 8/98 (8%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWS-------KDGKPATPNARVTIREKE 118
           P   +    +    G+  + +C +   P P            + G            E+ 
Sbjct: 7   PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 66

Query: 119 DLRFLEISEVTLE-DAGLYTIKVENNYGSVEATARLEI 155
            +  L IS +       +Y     N++GS     RL+ 
Sbjct: 67  VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 72  PHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
             ++    G  V F C+  +  PA    W++      P+     R  +    L I  V  
Sbjct: 9   QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-----RAMDFNGILTIRNVQP 63

Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
            DAG Y     N +   + TA L +
Sbjct: 64  SDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 18/105 (17%)

Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
               +   +  +         G  VTF C  +   P    +    +N  +          
Sbjct: 2   IMVTVEEQRSQSVRP------GADVTFICTAKSKSPAYTLVWTRLHNGKL---------- 45

Query: 218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
              S+       L I +V P D G + C  +N       +A L V
Sbjct: 46  --PSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
            +LTI ++   D+G Y    SN    D   A++ V+
Sbjct: 54  GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKE 223
            +V+  L+      G S T EC+V  V P D   +  FR N  +  ++  K         
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62

Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELG 252
                         +    F+C    +L 
Sbjct: 63  AT----FNSTADREDGHRNFSCLAVLDLM 87

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 5/93 (5%), Positives = 19/93 (20%), Gaps = 5/93 (5%)

Query: 72  PHNKICDLGDTVRFQCSVTG---QPAPWTSWSKDGKPATPNARVTIREKED--LRFLEIS 126
               +  +G +   +C V       +      +  +                       +
Sbjct: 9   LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNST 68

Query: 127 EVTLEDAGLYTIKVENNYGSVEATARLEIMDPR 159
               +    ++     +  S       +   P+
Sbjct: 69  ADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPK 101

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 22/102 (21%), Positives = 30/102 (29%), Gaps = 13/102 (12%)

Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
             P        L    GDSVT  C       N   + W                    S+
Sbjct: 5   RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDN-ATVHWVL---------RKPAAGSHPSR 54

Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
              +  RL +  V   D G ++C  A        +  L+VDV
Sbjct: 55  WAGMGRRLLLRSVQLHDSGNYSCYRAGRPA---GTVHLLVDV 93

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 17/93 (18%), Positives = 23/93 (24%), Gaps = 7/93 (7%)

Query: 64  SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRF 122
             P             GD+V   C         T  W      A  +           R 
Sbjct: 5   RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG---MGRR 61

Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           L +  V L D+G Y+            T  L +
Sbjct: 62  LLLRSVQLHDSGNYSCYRAG---RPAGTVHLLV 91

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 6e-06
 Identities = 13/87 (14%), Positives = 29/87 (33%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            + V   C          +  + + +    +  + K     + +   +   +    V  E
Sbjct: 19  NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78

Query: 239 DEGEFTCRVANELGEVVTSACLIVDVV 265
           D G +TC V+ E G       + + V+
Sbjct: 79  DTGTYTCMVSEEGGNSYGEVKVKLIVL 105

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 8e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 80  GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI--------REKEDLRFLEISEVTLE 131
            + V+  C+ +G  +P   W  D    T               R       +    VT E
Sbjct: 19  NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78

Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
           D G YT  V    G+     ++++
Sbjct: 79  DTGTYTCMVSEEGGNSYGEVKVKL 102

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 6e-06
 Identities = 15/87 (17%), Positives = 22/87 (25%), Gaps = 1/87 (1%)

Query: 65  SPRFYAVPHNKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
           S  F            G  +R    +    A         +     ++         R L
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTL 64

Query: 124 EISEVTLEDAGLYTIKVENNYGSVEAT 150
            IS+ +L D   Y   V     S E  
Sbjct: 65  TISQCSLADDAAYQCVVGGEKCSTELF 91

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 12/84 (14%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G  +    ++        ++ W +N +            +   +       L I      
Sbjct: 21  GHKIRLTVELADHDA---EVKWLKNGQ-----EIQMSGSKYIFESIGAKRTLTISQCSLA 72

Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
           D+  + C V  E      S  L V
Sbjct: 73  DDAAYQCVVGGE----KCSTELFV 92

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 9e-06
 Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI-ARLKIPHVYP 237
           G  +        +  +  ++ W R + L+                 ++    LKI ++  
Sbjct: 10  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 69

Query: 238 EDEGEFTCRVANELGEVVTSACLIVDV 264
           +D G +   V +  G  + +  L + +
Sbjct: 70  DDSGTYNVTVYSTNGTRILNKALDLRI 96

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 79  LGDTVRFQCS--VTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-------LEISEVT 129
           LG  +                 W +         R      +   F       L+I  +T
Sbjct: 9   LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 68

Query: 130 LEDAGLYTIKVENNYG--SVEATARLEIMD 157
            +D+G Y + V +  G   +     L I++
Sbjct: 69  RDDSGTYNVTVYSTNGTRILNKALDLRILE 98

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 11/92 (11%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           P F   P +         +  C            W +        A              
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV--------- 52

Query: 125 ISEVTLEDAGLYTIKVENNYG-SVEATARLEI 155
           ++   +  + +++ +  N  G +   TA + +
Sbjct: 53  LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           GD    EC V+      H ++W + N           +     ++N+    L    V P 
Sbjct: 18  GDPFELECPVKYCANRPH-VTWCKLNGTT-CVKLEDRQTSWKEEKNISFFILHFEPVLPN 75

Query: 239 DEGEFTCRVANELGEVVT-SACLIVDVVK 266
           D G + C    +   + + S  L V  VK
Sbjct: 76  DNGSYRCSANFQSNLIESHSTTLYVTDVK 104

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 7/101 (6%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSKDGKPATPNARVTIREKED----- 119
             +           GD    +C V      P  +W K                ++     
Sbjct: 4   QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNIS 63

Query: 120 LRFLEISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPR 159
              L    V   D G Y          +E+ +  L + D +
Sbjct: 64  FFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVK 104

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 13/97 (13%)

Query: 166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL 225
           +V   L  +    G++  FE ++           W    +       +      +  E+ 
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIELSEPDV---HGQWKLKGQ------PLTASPDCEIIEDG 53

Query: 226 VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
               L + +      GE + + AN      ++A L V
Sbjct: 54  KKHILILHNCQLGMTGEVSFQAAN----AKSAANLKV 86

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 72  PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
            +     +G+T  F+  +  +P     W   G+P T +    I E      L +    L 
Sbjct: 8   LYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLG 66

Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
             G  + +  N     ++ A L++
Sbjct: 67  MTGEVSFQAAN----AKSAANLKV 86

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
              V+  C V+   P D    W  N +  +   +  P +  D     + ++L +     +
Sbjct: 19  QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYF-LYSKLNVKKETWQ 77

Query: 239 DEGEFTCRVANE 250
               FTC V +E
Sbjct: 78  QGNTFTCSVLHE 89

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 9/83 (10%)

Query: 79  LGDTVRFQC------SVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLED 132
           +       C             P   W KD KP   +       K+ L    +  V  + 
Sbjct: 13  VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI---VMNVAEKH 69

Query: 133 AGLYTIKVENNYGSVEATARLEI 155
            G YT      Y   +      I
Sbjct: 70  RGNYTCHASYTYLGKQYPITRVI 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 66  PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
           P       N   D+GD V  +C V G+      W       +     +         L  
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-A 61

Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           +  +  +    T   EN+ G  E + ++ +
Sbjct: 62  NVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 1e-04
 Identities = 15/98 (15%), Positives = 23/98 (23%), Gaps = 9/98 (9%)

Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
           P +   + N     GD V   CQV+          W                +       
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGL--EQAGWILTELEQSATVMKSGGLPSLGLTL 60

Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
             +                TC   N++G    S  + V
Sbjct: 61  ANVTSDLNRKNV-------TCWAENDVGRAEVSVQVNV 91

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 5e-05
 Identities = 9/72 (12%), Positives = 24/72 (33%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
               T  C +    P    + W  +   +    +     +  + + +  + L +     E
Sbjct: 20  TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWE 79

Query: 239 DEGEFTCRVANE 250
               ++C+V +E
Sbjct: 80  RHSSYSCQVTHE 91

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 5e-05
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            + V+  C V+   P+D  + W  N +         P +  D     + ++L +     +
Sbjct: 19  KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFF-LYSKLTVDKSRWQ 77

Query: 239 DEGEFTCRVANE 250
               F+C V +E
Sbjct: 78  QGNVFSCSVMHE 89

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            +  T  C V    P    ++W  N   I          +         + L +     +
Sbjct: 20  TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYM-TSSYLSLTADQWK 78

Query: 239 DEGEFTCRVANE 250
                +C+V +E
Sbjct: 79  SHNRVSCQVTHE 90

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 11/90 (12%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
           G +   +C  +                          + +      +    L I ++   
Sbjct: 12  GGTAELKCSQKSNLARVFWKFQN-----------GVLKAESPKYGLMGRKNLLIFNLSEG 60

Query: 239 DEGEFTCRVANELGEVVTSACLIVDVVKGK 268
           D G + C     +        +   V++ K
Sbjct: 61  DSGVYQCLSEERVKNKTVFQVVAKHVLEVK 90

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE-NLVIARLKIPHVYP 237
             +VTF     V                ++           +    + V   L I ++  
Sbjct: 10  YGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS 69

Query: 238 EDEGEFTCRVANELGEVVTSACLIVDVV 265
            DE E+     N    +  +    + V+
Sbjct: 70  SDEDEYEMESPN----ITDTMKFFLYVL 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 12/84 (14%), Positives = 20/84 (23%), Gaps = 11/84 (13%)

Query: 79  LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----------LEISEV 128
           +   V F       P     W K             R     +           L I  +
Sbjct: 9   VYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL 67

Query: 129 TLEDAGLYTIKVENNYGSVEATAR 152
           T  D   Y ++  N   +++    
Sbjct: 68  TSSDEDEYEMESPNITDTMKFFLY 91

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
             ++   C V    P    I+W  + +++ +D       Q     +   + L +   +  
Sbjct: 21  PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAS-TQSELTLSQKHWL 79

Query: 239 DEGEFTCRVANE 250
            +  +TC+V  +
Sbjct: 80  SDRTYTCQVTYQ 91

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 4e-04
 Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 66  PRFYAVPHNKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
           P     P   +   LG + +  C +       +   +        +   ++       L 
Sbjct: 3   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG----LDTSLGAVQSDTGRSVLT 58

Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
           +   +L  AG           + + T +L +
Sbjct: 59  VRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLD-SDMKPEVQVDSKENLVIARLKIPHVYP 237
               +  C +    P D ++ W  +    +    +   +         + + L +     
Sbjct: 20  SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY 79

Query: 238 EDEGEFTCRVANE 250
           E    +TC   ++
Sbjct: 80  ERHNSYTCEATHK 92

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 6e-04
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 16/86 (18%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            D +   C         H +++ +N +  K                       IP    +
Sbjct: 17  EDPIHLRCHSWKNTA-LHKVTYLQNGKDRKYFHHNSDFH--------------IPKATLK 61

Query: 239 DEGEFTCRVANELGEVVTSACLIVDV 264
           D G + CR        V+S  + + +
Sbjct: 62  DSGSYFCRGLVGSKN-VSSETVNITI 86

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
              VT  C V    P D  + W  N +      + +P +  D     + ++L++      
Sbjct: 19  KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYF-MYSKLRVEKKNWV 77

Query: 239 DEGEFTCRVANE 250
           +   ++C V +E
Sbjct: 78  ERNSYSCSVVHE 89

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN-LVIARLKIPHVYPE 238
            + +  C +    P +  + W  +N L   +S      Q        + + L +     E
Sbjct: 21  GTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYE 80

Query: 239 DEGEFTCRVANE 250
               + C V ++
Sbjct: 81  KHKVYACEVTHQ 92

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
                  C V    P   ++ WFRN +  K        +Q        +  L+     P 
Sbjct: 18  QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETV---PR 74

Query: 239 DEGEFTCRVANE 250
               +TC+V + 
Sbjct: 75  SGEVYTCQVEHP 86

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN-----LVIARLKI 232
                T  C      P+  ++SW+ N + +       P+   +          + +RL++
Sbjct: 19  HTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRV 78

Query: 233 PHVYPEDEGE-FTCRVANE 250
              + ++    F C+V   
Sbjct: 79  SATFWQNPRNHFRCQVQFY 97

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 9/73 (12%), Positives = 27/73 (36%)

Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
             +  T  C +    P    ++W  ++  +K   +     +  + +    + L +     
Sbjct: 19  QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQW 78

Query: 238 EDEGEFTCRVANE 250
           +    ++C+V +E
Sbjct: 79  KSHRSYSCQVTHE 91

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 7/84 (8%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
            +     C +         I+W++++    + ++    +           +L       E
Sbjct: 17  NEIDVRPCPLNPNEHK-GTITWYKDDSKTPVSTEQASRIHQH------KEKLWFVPAKVE 69

Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
           D G + C V N    +        
Sbjct: 70  DSGHYYCVVRNSSYCLRIKISAKF 93

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 7/79 (8%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI-------ARLK 231
            +  T  C   V          +       + + M  ++ +  +              + 
Sbjct: 9   KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV 68

Query: 232 IPHVYPEDEGEFTCRVANE 250
           I  + P DEG + C V   
Sbjct: 69  ILALRPSDEGTYECVVLKY 87

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLD--SDMKPEVQVDSKENLVIARLKIPHVY 236
            D  T  C +Q   P D  + W  N   +     S  +P     S    V +RL++    
Sbjct: 19  RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFF-VFSRLEVTRAE 77

Query: 237 PEDEGEFTCRVANE 250
            E + EF CR  +E
Sbjct: 78  WEQKDEFICRAVHE 91

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
                  C V    P    + WFRN++         P ++       ++  L++    P+
Sbjct: 16  NHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMT---PQ 72

Query: 239 DEGEFTCRV 247
               +TC V
Sbjct: 73  RGDVYTCHV 81

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
           D V+  C +    P D  + W  N +  +   + +P +  D     V ++L +     E 
Sbjct: 19  DLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYF-VYSKLNVQKSNWEA 77

Query: 240 EGEFTCRVANE 250
              FTC V +E
Sbjct: 78  GNTFTCSVLHE 88

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 80  GDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
           G  V F CS     PA    W  +  P    A       +    L I++    D G Y+ 
Sbjct: 19  GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSC 78

Query: 139 KVENNYGSVEATARLE 154
              ++   +  +   +
Sbjct: 79  FATSHIDFITKSVFSK 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.76
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.75
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.75
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.71
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.69
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.69
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.69
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.68
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.68
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.68
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.66
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.62
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.62
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.61
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.6
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.6
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.59
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.59
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.59
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.59
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.59
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.58
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.58
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.58
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.57
d2avga1	110	Cardiac myosin binding protein C, different domain	99.57
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.57
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.56
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.56
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.56
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.56
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.55
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.55
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.55
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.55
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.54
d2avga1	110	Cardiac myosin binding protein C, different domain	99.54
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.54
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.54
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.54
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.53
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.52
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.52
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.51
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.51
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.51
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.5
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.5
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.5
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.5
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.5
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.49
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.49
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.48
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.48
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.48
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.48
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.47
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.47
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.46
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.46
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.46
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.46
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.45
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.45
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.44
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.44
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.44
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.43
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.42
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.41
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.41
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.41
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.4
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.4
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.4
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.39
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.39
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.38
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.38
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.38
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.37
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.37
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.37
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.36
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.36
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.36
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.35
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.34
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.34
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.34
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.34
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.33
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.33
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.32
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.32
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.3
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.3
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.29
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.29
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.27
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.27
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.2
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.19
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.15
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.13
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.01
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.99
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.96
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.91
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.9
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.9
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.86
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.85
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.85
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.82
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.8
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.79
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.79
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.78
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.78
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.77
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.76
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.75
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.75
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.74
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.74
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.73
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.72
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.72
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.71
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.71
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.71
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.7
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.69
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.69
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.68
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.68
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.67
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.66
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.65
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.65
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.65
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.65
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.65
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.64
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.64
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.64
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.62
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.62
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.61
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.61
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.61
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.6
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.6
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.6
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.59
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.59
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.58
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.58
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.58
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.57
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.57
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.56
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.56
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.56
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.56
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.55
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.55
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.55
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.54
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.53
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.53
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.53
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.53
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.52
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.52
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.51
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.5
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.5
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.49
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.49
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.48
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.48
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.47
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.47
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.47
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.47
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.46
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.45
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.45
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.45
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.44
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.44
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.43
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.43
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.42
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.42
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.41
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.4
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.4
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.37
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.37
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.37
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.37
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.37
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.37
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.36
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.36
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.35
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.35
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.35
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.34
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.34
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.33
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.33
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.32
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.32
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.32
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.32
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.31
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.3
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.3
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.3
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.28
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.28
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.28
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.28
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.28
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.27
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.26
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.25
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.25
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.25
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.25
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.25
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.24
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.24
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.24
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.24
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.24
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.24
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.23
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.23
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.22
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.22
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.22
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.22
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.21
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.21
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.21
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.21
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.21
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.21
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.2
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.2
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.2
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.2
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.19
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.19
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.19
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.19
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.19
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.18
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.18
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.16
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.16
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.16
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	98.16
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.16
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.15
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.14
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.14
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.14
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.14
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.13
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.13
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.13
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.13
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.12
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.12
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.12
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.12
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.12
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.12
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.12
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.11
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.11
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.11
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.11
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	98.11
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.11
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.11
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.11
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.1
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.1
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.1
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.1
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.09
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.09
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.09
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.08
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.08
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.08
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.08
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.08
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.08
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.08
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.07
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.07
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.07
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.06
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.06
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.05
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.05
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.04
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.04
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.04
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	98.03
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.03
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.02
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	98.02
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.02
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	98.02
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.01
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.01
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	98.0
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.0
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.0
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.99
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.98
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.98
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.98
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.98
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.98
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.97
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.97
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.97
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.96
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.96
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.96
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.96
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.95
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.95
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.95
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.95
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.95
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.94
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.94
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.93
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.93
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.93
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.93
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.93
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.93
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.92
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.91
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.91
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.9
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.88
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.87
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.87
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.87
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.87
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.86
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.85
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.85
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.85
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.84
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.84
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.83
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.79
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.78
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.77
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.77
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.76
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.76
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.76
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.74
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.73
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.73
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.72
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.72
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.72
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.72
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.71
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.71
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.7
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.7
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.68
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.68
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.68
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.67
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.67
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.67
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.67
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.66
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.66
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.66
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.65
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.64
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.64
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.63
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.62
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.62
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.61
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.61
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.61
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.6
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.59
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.59
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.56
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.56
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.55
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.55
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.55
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.53
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.53
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.52
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.51
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.51
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.49
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.48
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.48
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.48
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.46
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.45
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.44

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.5e-18  Score=113.54  Aligned_cols=94  Identities=27%  Similarity=0.406  Sum_probs=86.6

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      |.|...|....+.+|+++.|.|.+.|.|.+.+.|++++..+....++.+....+..+|.|.+++.+|+|.|+|.+.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            56777888899999999999999999999999999999999888888888877888999999999999999999999999


Q ss_pred             eEEEEEEEEEECCC
Q psy1095         146 SVEATARLEIMDPR  159 (325)
Q Consensus       146 ~~~~~~~l~v~~~~  159 (325)
                      .....+.|.|.+.|
T Consensus        81 ~~~~~~~l~V~~~P   94 (101)
T d2cqva1          81 SRQAQVNLTVVDKP   94 (101)
T ss_dssp             EEECCEEEEEECSC
T ss_pred             EEEEEEEEEEEecC
Confidence            99999999998864

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=2.9e-18  Score=114.73  Aligned_cols=94  Identities=27%  Similarity=0.468  Sum_probs=85.7

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      .|.|+..|.+..+.+|+++.|.|.+.|.|.|.++|++++..+..+.++.+...++...|.|.+++.+|+|.|+|.+.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            38889999999999999999999999999999999999999988888777777778889999999999999999999999


Q ss_pred             eeEEEEEEEEEECC
Q psy1095         145 GSVEATARLEIMDP  158 (325)
Q Consensus       145 ~~~~~~~~l~v~~~  158 (325)
                      |.....+.|.|...
T Consensus        81 G~~~~~~~l~V~~~   94 (97)
T d1koaa1          81 GTKEEIVFLNVTRH   94 (97)
T ss_dssp             EEEEEEECCEEECS
T ss_pred             CEEEEEEEEEEeec
Confidence            98888888888754

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=2e-17  Score=110.78  Aligned_cols=93  Identities=24%  Similarity=0.381  Sum_probs=82.8

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEE-EecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI-REKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      +|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++.++....+... ...++.+.|.|.++...|+|.|+|.+.|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   83 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI   83 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEEC
Confidence            68888889999999999999999999999999999999999988776554 34456778999999999999999999999


Q ss_pred             CeeEEEEEEEEEEC
Q psy1095         144 YGSVEATARLEIMD  157 (325)
Q Consensus       144 ~~~~~~~~~l~v~~  157 (325)
                      .|.....+.|.|..
T Consensus        84 ~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          84 AGETSSHAFLLVQA   97 (98)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CcEEEEEEEEEEEE
Confidence            99988888888864

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=5.1e-18  Score=112.55  Aligned_cols=91  Identities=20%  Similarity=0.338  Sum_probs=83.8

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      +|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+....++..........|.|.+++.+|+|.|+|.+.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            68888888899999999999999999999999999999999988888888777888899999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy1095         145 GSVEATARLEI  155 (325)
Q Consensus       145 ~~~~~~~~l~v  155 (325)
                      |.....+.|.|
T Consensus        82 G~~~~~~~l~V   92 (93)
T d1wiua_          82 GEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            99888888776

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=1.6e-17  Score=108.91  Aligned_cols=87  Identities=32%  Similarity=0.665  Sum_probs=78.7

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      |.|+..|.+..+.+|+++.|.|.+.|.|.|.++|++++.++....++.+..    ..|.|.+++.+|+|.|+|.+.|..|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET----TEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeee----eeEEEEeecccCCEEEEEEEEeCCC
Confidence            788889999999999999999999999999999999999998888776643    2599999999999999999999999


Q ss_pred             eEEEEEEEEEE
Q psy1095         146 SVEATARLEIM  156 (325)
Q Consensus       146 ~~~~~~~l~v~  156 (325)
                      .....+.|.|.
T Consensus        78 ~~~~~~~l~V~   88 (89)
T d1cs6a4          78 TVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            88888888875

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.75  E-value=3.1e-17  Score=110.74  Aligned_cols=94  Identities=32%  Similarity=0.428  Sum_probs=84.1

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-EDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.|...|.+..+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+... .+..+|.|.+++..|+|.|+|.+.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            368888889999999999999999999999999999999999998888877653 4567899999999999999999999


Q ss_pred             CCeeEEEEEEEEEEC
Q psy1095         143 NYGSVEATARLEIMD  157 (325)
Q Consensus       143 ~~~~~~~~~~l~v~~  157 (325)
                      ..|....++.|.|..
T Consensus        87 ~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          87 SLGEATCTAELLVET  101 (102)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999988888888753

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.71  E-value=7.6e-18  Score=111.18  Aligned_cols=89  Identities=30%  Similarity=0.527  Sum_probs=79.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      |+..|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+........|.|.+++.+|+|.|+|.+.|..|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            45677888999999999999999999999999999999988888888877888899999999999999999999999988


Q ss_pred             EEEEEEEEE
Q psy1095         148 EATARLEIM  156 (325)
Q Consensus       148 ~~~~~l~v~  156 (325)
                      ...+.|.|.
T Consensus        82 ~~~~~l~V~   90 (91)
T d1tnna_          82 EAEFTLTIQ   90 (91)
T ss_dssp             CEEEEEECC
T ss_pred             EEEEEEEEE
Confidence            777777663

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.69  E-value=2.9e-16  Score=105.04  Aligned_cols=93  Identities=23%  Similarity=0.357  Sum_probs=78.9

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.|...+.+..+.+|+.+.|.|.+.|.|.  +.+.|++++..+..+.+........     ..+.|.|.++..+|+|.|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~--p~v~W~k~~~~i~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y   76 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPD--PECEWYKNGVKIERSDRIYWYWPED-----NVCELVIRDVTGEDSASI   76 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESC--CEEEEEETTEECCCCSSEEEEEEET-----TEEEEEECSCCGGGCEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecC--CeEEEEeCceEEeeeeeeEEEeccc-----eEEEEEeccCccccCEEE
Confidence            467777778889999999999999999998  8999999999998766544332222     246899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|..|.....+.|.|.
T Consensus        77 ~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          77 MVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCcEEEEEEEEEEE
Confidence            99999999999999988884

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.69  E-value=1.9e-16  Score=103.72  Aligned_cols=86  Identities=29%  Similarity=0.532  Sum_probs=72.8

Q ss_pred             CCeeEecCCc-eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHN-KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      +|.|...|.. ..+.+|+++.|.|.+.|.|.|.++|++++.++... ++.+...    .|.|.+++..|+|.|+|.+.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~----~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDS----GLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETT----EEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEeee----eEEECCCChhhCEEEEEEEEEC
Confidence            5788877754 56889999999999999999999999999998654 4444322    4999999999999999999999


Q ss_pred             CeeEEEEEEEEE
Q psy1095         144 YGSVEATARLEI  155 (325)
Q Consensus       144 ~~~~~~~~~l~v  155 (325)
                      .|.....+.|.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            998888877776

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=1.1e-16  Score=106.93  Aligned_cols=93  Identities=24%  Similarity=0.371  Sum_probs=78.8

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.|...+....+.+|+.+.|.|.+.|.|.  +.+.|++++..+..+.++...  ..+    ....|.|.++..+|+|.|+
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~--p~v~W~~~~~~l~~~~~~~~~--~~~----~~~~L~I~~~~~~D~G~Y~   73 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSP--PVVTWHKDDRELKQSVKYMKR--YNG----NDYGLTINRVKGDDKGEYT   73 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSC--CEEEEEETTEECCSBTTBBCC--CST----TEEEEEESCCCSGGGSCEE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCC--CEEEEEEeeeccceeeEEEEE--ecC----CeeEEEeCCCceecCEEEE
Confidence            67777788889999999999999999988  899999999998766554432  233    3568999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEEEee
Q psy1095         245 CRVANELGEVVTSACLIVDVV  265 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v~~~  265 (325)
                      |.|.|..|.....+.|.|...
T Consensus        74 C~a~N~~G~~~~~~~l~V~~~   94 (97)
T d1koaa1          74 VRAKNSYGTKEEIVFLNVTRH   94 (97)
T ss_dssp             EEEEETTEEEEEEECCEEECS
T ss_pred             EEEEECCCEEEEEEEEEEeec
Confidence            999999999998888888543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-16  Score=106.44  Aligned_cols=96  Identities=24%  Similarity=0.282  Sum_probs=79.9

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.|...+....+..|+.+.|.|.+.|.|.  +.+.|++++..+....+....  ...    ..+.|.|.++..+|+|.|+
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~--p~v~W~k~~~~l~~~~~~~~~--~~~----~~~~L~I~~~~~~D~G~Y~   72 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQP--ITCTWMKFRKQIQESEHMKVE--NSE----NGSKLTILAARQEHCGCYT   72 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSS--CEEEEEESSSBCCCSSSEEEE--ECS----SEEEEEETTCCTTTCEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCC--CEEEEEeCceeeccCCcEEEE--Eec----ceeEEEEeeCCcccCEEEE
Confidence            34555667788999999999999999888  899999999998776655443  233    3478999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEEEeeCCe
Q psy1095         245 CRVANELGEVVTSACLIVDVVKGK  268 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v~~~~~~  268 (325)
                      |.|.|..|....++.|.|...+++
T Consensus        73 C~a~N~~G~~~~~~~l~V~~~P~p   96 (101)
T d2cqva1          73 LLVENKLGSRQAQVNLTVVDKPDP   96 (101)
T ss_dssp             EEEECSSCEEECCEEEEEECSCSC
T ss_pred             EEEEECCCEEEEEEEEEEEecCCC
Confidence            999999999999999999766554

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.68  E-value=3.4e-16  Score=105.48  Aligned_cols=93  Identities=24%  Similarity=0.576  Sum_probs=78.9

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.|...+.+..+.+|+.+.|.|.+.|.|.  +.+.|++++..+..+.+........     ....|.|.+++.+|.|.|
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~--p~v~W~k~~~~i~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y   80 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPD--PEVMWFKDDNPVKESRHFQIDYDEE-----GNCSLTISEVCGDDDAKY   80 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESC--CEEEEEETTEECCCSSSEEEEECTT-----CEEEEEESSCCGGGCEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccC--CeEEEEeeeccccceeeEeEEEecC-----ceeeeEecCCCHHhCEEE
Confidence            577777788889999999999999999988  8999999999998766554432222     356899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|..|....++.|.|.
T Consensus        81 ~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          81 TCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCcEEEEEEEEEEE
Confidence            99999999999999888874

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.68  E-value=1.5e-16  Score=104.14  Aligned_cols=87  Identities=22%  Similarity=0.444  Sum_probs=74.9

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.|...+.+..+..|+.+.|.|.+.|.|.  +.+.|++++..+..+.+...   ..       ..|.|.++..+|+|.|+
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~--p~v~W~k~g~~i~~~~~~~~---~~-------~~L~i~~v~~~D~G~Y~   69 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPR--PAVRWLRDGQPLASQNRIEV---SG-------GELRFSKLVLEDSGMYQ   69 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESC--CEEEEEETTEECCCCSSEEE---ET-------TEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcC--CEEEEEEeeccccccceeee---ee-------eeEEEEeecccCCEEEE
Confidence            67777788889999999999999999998  89999999999876554322   22       37999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEEE
Q psy1095         245 CRVANELGEVVTSACLIVD  263 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v~  263 (325)
                      |.|.|..|.....+.|.|.
T Consensus        70 C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          70 CVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCEEEEEEEEEEE
Confidence            9999999999888888874

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=3.6e-16  Score=105.00  Aligned_cols=93  Identities=28%  Similarity=0.452  Sum_probs=75.1

Q ss_pred             CCeeEecCCc--eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCc--EEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          65 SPRFYAVPHN--KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR--VTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        65 ~p~~~~~~~~--~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      ||.|...+..  .++..|+++.|.|.+.|.|.|.+.|++++..+.....  ...........|.|.+++.+|+|.|+|.+
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            6777766554  3567899999999999999999999999998865432  12223344568999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEEC
Q psy1095         141 ENNYGSVEATARLEIMD  157 (325)
Q Consensus       141 ~~~~~~~~~~~~l~v~~  157 (325)
                      .|..|.....+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999998888888865

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.66  E-value=2.5e-16  Score=104.25  Aligned_cols=91  Identities=22%  Similarity=0.350  Sum_probs=77.6

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+.+..+..|+++.|.|.+.|.|.  +.+.|++++..+..+......  ..+    ..+.|.|.++..+|+|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~--p~v~W~~~~~~i~~~~~~~~~--~~~----~~~~L~I~~~~~~D~G~Y   73 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPD--PTATWTVGDSGAALAPELLVD--AKS----STTSIFFPSAKRADSGNY   73 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSS--CEEEEECSSSSCBCSTTSEEE--EET----TEEEEECTTBCGGGCEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecC--CeEEEEeeeeeceeeeeeeec--ccc----cceeeccccccccccEEE
Confidence            467777777888999999999999999998  899999999988777665544  222    346899999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIV  262 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v  262 (325)
                      +|.|.|..|.....+.|.|
T Consensus        74 ~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          74 KLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999999998888876

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=7e-16  Score=101.47  Aligned_cols=87  Identities=28%  Similarity=0.411  Sum_probs=70.7

Q ss_pred             CCCeeEec-CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAV-PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.+... |....+.+|+++.|.|.+.|.|.|.+.|++++.......      .....+|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N   76 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW------LSSEPLLHIQNVDFEDEGTYECEAEN   76 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC------SBSSSEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe------eeeeeEEEeCCCCccCCEEEEEEEEE
Confidence            35666654 778889999999999999999999999999765443211      12234699999999999999999999


Q ss_pred             CCeeEEEEEEEEEE
Q psy1095         143 NYGSVEATARLEIM  156 (325)
Q Consensus       143 ~~~~~~~~~~l~v~  156 (325)
                      ..|.....+.|.|.
T Consensus        77 ~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          77 IKGRDTYQGRIIIH   90 (91)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99988888888774

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.1e-15  Score=99.51  Aligned_cols=92  Identities=22%  Similarity=0.313  Sum_probs=76.7

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeC----C--CCCcEEEEecCCeEEEEEccCC-CCCCeE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPA----T--PNARVTIREKEDLRFLEISEVT-LEDAGL  135 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~----~--~~~~~~~~~~~~~~~l~i~~~~-~~d~G~  135 (325)
                      .||.|...+....+.+|+.+.|.|.+.+.|.| .+.|++++...    .  ...++.+.......+|.|.++. ..|+|.
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            38999988999999999999999999998877 79999975332    1  1235666666777899999998 579999


Q ss_pred             EEEEEEeCCeeEEEEEEEEE
Q psy1095         136 YTIKVENNYGSVEATARLEI  155 (325)
Q Consensus       136 Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      |+|.+.|..|.....+.|.|
T Consensus        81 Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999999888888876

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.62  E-value=1.3e-15  Score=99.66  Aligned_cols=85  Identities=28%  Similarity=0.447  Sum_probs=68.6

Q ss_pred             CeeeecCcC-eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         165 PKVLNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       165 p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      |.|...+.. ..+.+|+.+.|.|.+.|.|+  +.+.|++++..+..+.   .. ..++       .|.|.++..+|+|.|
T Consensus         3 P~f~~~p~~~~~v~~G~~~~l~C~~~g~P~--p~v~W~~~~~~i~~~~---~~-~~~~-------~L~i~~v~~~d~G~Y   69 (89)
T d1biha4           3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPA--PNVVWSHNAKPLSGGR---AT-VTDS-------GLVIKGVKNGDKGYY   69 (89)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESC--CCCEEEETTEECCSSS---EE-EETT-------EEEESSCCSTTCEEE
T ss_pred             CeEEECCCCCEEEeCCCeEEEEEEEEEeCC--CEEEEEeCCccCcccc---EE-Eeee-------eEEECCCChhhCEEE
Confidence            556555544 46788999999999999998  8999999999885432   11 1222       699999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIV  262 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v  262 (325)
                      +|.|.|..|.....+.|.|
T Consensus        70 ~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          70 GCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999999888887766

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.9e-15  Score=99.55  Aligned_cols=89  Identities=16%  Similarity=0.256  Sum_probs=71.1

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      +.|...|.+..+.+|+++.|.|.+.|.|.|.++|++++..+............+ .+|.|.+++..|+|.|+|.+.|..+
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcC
Confidence            567788999999999999999999999999999999999886554332222222 3599999999999999999999766


Q ss_pred             eEEEEEEEEE
Q psy1095         146 SVEATARLEI  155 (325)
Q Consensus       146 ~~~~~~~l~v  155 (325)
                      .......+.|
T Consensus        81 ~~~~~~~i~V   90 (92)
T d1epfa2          81 GEINFKDIQV   90 (92)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            5555555554

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.1e-15  Score=101.16  Aligned_cols=84  Identities=26%  Similarity=0.373  Sum_probs=66.3

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      .+..|+.+.|.|.+.|.|.  +.+.|++++..+..............    ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        16 t~~~G~~v~l~C~~~g~P~--p~i~W~~~g~~i~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   89 (100)
T d1qz1a3          16 TANLGQSVTLVCDADGFPE--PTMSWTKDGEPIENEEEDDEKHIFSD----DSSELTIRNVDKNDEAEYVCIAENKAGEQ   89 (100)
T ss_dssp             ETTSCCCEEEEEEEEEESC--CEEEEEETTEECCCC--CCSSEEECT----TSCEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEcCCCCEEEEEEEEEecC--CEEEEEeCCcccccccccceeEEeec----CceEEEeCCCCcccCEEEEEEEEECCCEE
Confidence            4467999999999999998  89999999998865543222211111    12589999999999999999999999999


Q ss_pred             EeEEEEEEEe
Q psy1095         255 VTSACLIVDV  264 (325)
Q Consensus       255 ~~~~~l~v~~  264 (325)
                      ...+.|.|..
T Consensus        90 ~~~~~l~V~~   99 (100)
T d1qz1a3          90 DASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEE
Confidence            9998888853

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.7e-15  Score=96.81  Aligned_cols=86  Identities=14%  Similarity=0.219  Sum_probs=68.5

Q ss_pred             CeeEecCC-ceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          66 PRFYAVPH-NKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        66 p~~~~~~~-~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      |.++..|. ...+.+|+++.|.|.+. +.|.|.|+|++.+.++..     .........|.|.+++.+|+|.|+|.+.|.
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~   77 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCG   77 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEeC
Confidence            44444454 46688999999999985 788999999988766532     122345678999999999999999999999


Q ss_pred             CeeEEEEEEEEEE
Q psy1095         144 YGSVEATARLEIM  156 (325)
Q Consensus       144 ~~~~~~~~~l~v~  156 (325)
                      .+..+.++.|.|.
T Consensus        78 ~g~~~~s~~l~Vy   90 (90)
T d1gsma1          78 GRTFQHTVQLLVY   90 (90)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEC
Confidence            9988888888774

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.9e-15  Score=95.21  Aligned_cols=82  Identities=16%  Similarity=0.290  Sum_probs=65.8

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .|.|...|.+..+.+|+++.|.|.+.|.|.| .++|+|++..+.....      .   .+.|.....+|+|.|+|.+.|.
T Consensus         1 ~P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~------~---~~~l~~~~~~d~G~Y~C~A~N~   71 (85)
T d1rhfa2           1 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP------S---PSVLNVTGVTQSTMFSCEAHNL   71 (85)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE------S---SEEEEECCCSSCEEEEEEEEET
T ss_pred             CCcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC------c---ceEEecCCccccEEEEEEEEcC
Confidence            3889999999999999999999999999988 8999999998865421      1   2455566678999999999999


Q ss_pred             CeeEE-EEEEEEE
Q psy1095         144 YGSVE-ATARLEI  155 (325)
Q Consensus       144 ~~~~~-~~~~l~v  155 (325)
                      .|... ..+.|.|
T Consensus        72 ~G~~~S~~~~v~V   84 (85)
T d1rhfa2          72 KGLASSRTATVHL   84 (85)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            99543 3455554

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.59  E-value=4.8e-16  Score=102.31  Aligned_cols=85  Identities=19%  Similarity=0.419  Sum_probs=71.1

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      .+.+..+.+|+.+.|.|.+.|.|.  +.+.|++++..+.........  ...    ..+.|.|.++..+|+|.|+|.|.|
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~--~~~----~~~~L~i~~v~~~D~G~Y~C~a~N   76 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPV--PTVTWLRKGQVLSTSARHQVT--TTK----YKSTFEISSVQASDEGNYSVVVEN   76 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSC--CCCEEESSSSTTCSSSSCEEE--ECS----SEEEEECSSCCSCCCEEEEEECBC
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeC--CeEEEEEeecccccccceeee--eec----ceeEEeecCCCHHHCEEEEEEEEE
Confidence            345678889999999999999988  889999999888766554433  222    357899999999999999999999


Q ss_pred             CCCcEEeEEEEEE
Q psy1095         250 ELGEVVTSACLIV  262 (325)
Q Consensus       250 ~~~~~~~~~~l~v  262 (325)
                      ..|.....+.|.|
T Consensus        77 ~~G~~~~~~~l~V   89 (91)
T d1tnna_          77 SEGKQEAEFTLTI   89 (91)
T ss_dssp             SSCBCCEEEEEEC
T ss_pred             CCCEEEEEEEEEE
Confidence            9999888888876

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4.7e-15  Score=97.59  Aligned_cols=89  Identities=20%  Similarity=0.266  Sum_probs=73.1

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      +.|...+.+..+.+|+.+.|.|.+.|.|.  +.+.|++++..+............++       .|.|.+++.+|+|.|+
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~--p~v~W~~~~~~i~~~~~~~~~~~~~~-------~L~I~~~~~~D~G~Y~   72 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLP--PTIIWKHKGRDVILKKDVRFIVLSNN-------YLQIRGIKKTDEGTYR   72 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSC--CEEEEEETTEEGGGGCCTTEEECTTS-------CEEETTCCGGGCEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCC--CeEEEEEcCcccccccceeeeeeeee-------eEEECCCCHHhCEEEE
Confidence            45666677889999999999999999988  89999999999887766555433333       6999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEE
Q psy1095         245 CRVANELGEVVTSACLIV  262 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v  262 (325)
                      |.|.|..+.......+.|
T Consensus        73 C~a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          73 CEGRILARGEINFKDIQV   90 (92)
T ss_dssp             EEEEEGGGTEEEEEEEEE
T ss_pred             EEEEECcCCEEEEEEEEE
Confidence            999998877766666665

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.59  E-value=2e-15  Score=100.49  Aligned_cols=82  Identities=32%  Similarity=0.571  Sum_probs=67.4

Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEE-EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL  153 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  153 (325)
                      ..+.+|+++.|.|.+.|.|.|.+.|++++.++....+.. ........+|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            457899999999999999999999999999986543221 1222334579999999999999999999999988888888


Q ss_pred             EEE
Q psy1095         154 EIM  156 (325)
Q Consensus       154 ~v~  156 (325)
                      .|.
T Consensus        95 ~Vl   97 (97)
T d3dara1          95 DVV   97 (97)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            773

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=4.8e-15  Score=97.37  Aligned_cols=85  Identities=24%  Similarity=0.304  Sum_probs=67.2

Q ss_pred             Ceeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         165 PKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       165 p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      |.+... +....+.+|+.+.|.|.+.|.|.  +.+.|++++........      ..      ...|.|.+++.+|+|.|
T Consensus         5 P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~~~~~~~~~~------~~------~~~L~I~~v~~~D~G~Y   70 (91)
T d1cs6a3           5 PSIKAKFPADTYALTGQMVTLECFAFGNPV--PQIKWRKLDGSQTSKWL------SS------EPLLHIQNVDFEDEGTY   70 (91)
T ss_dssp             EEEEECCCSEEEEETTCCEEEECEEEEESC--CEEEEEECCSCCSCCCS------BS------SSEEEECSCCGGGCEEE
T ss_pred             CeEEeeCCCcEEEecCCcEEEEEEEEEccC--CEEEEEecccccceEee------ee------eeEEEeCCCCccCCEEE
Confidence            444443 45677899999999999999998  89999997654432211      11      14799999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|..|.....+.|.|.
T Consensus        71 ~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          71 ECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEEE
Confidence            99999999999888888774

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.4e-15  Score=97.73  Aligned_cols=86  Identities=28%  Similarity=0.441  Sum_probs=70.1

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCC--eEEEEEccCCCCCCeEEEEEEEeCCeeE-
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED--LRFLEISEVTLEDAGLYTIKVENNYGSV-  147 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-  147 (325)
                      .|.++.+.+|+++.|.|.+.+.|.|.+.|+|++..+....+..+.....  ...|.|.+++.+|+|.|+|.+.|..|.. 
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            3667789999999999999999999999999999988766555443333  4579999999999999999999988864 


Q ss_pred             EEEEEEEEE
Q psy1095         148 EATARLEIM  156 (325)
Q Consensus       148 ~~~~~l~v~  156 (325)
                      +..+.|.|.
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence            445666663

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.58  E-value=1.1e-14  Score=96.92  Aligned_cols=86  Identities=23%  Similarity=0.418  Sum_probs=69.8

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEE--EecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI--REKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-  147 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-  147 (325)
                      .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+.......+  .......+|.|.+++.+|+|.|+|.+.|..|.. 
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            35678899999999999999999999999999999875543332  233344679999999999999999999998865 


Q ss_pred             EEEEEEEEE
Q psy1095         148 EATARLEIM  156 (325)
Q Consensus       148 ~~~~~l~v~  156 (325)
                      ...+.|.|.
T Consensus        89 s~s~~L~Vl   97 (97)
T d1biha3          89 KHSLKLTVV   97 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
Confidence            446777763

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.5e-15  Score=104.90  Aligned_cols=93  Identities=23%  Similarity=0.513  Sum_probs=75.5

Q ss_pred             CCCeeEe-----cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC-----------------------------C
Q psy1095          64 SSPRFYA-----VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-----------------------------N  109 (325)
Q Consensus        64 ~~p~~~~-----~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~-----------------------------~  109 (325)
                      .||.|..     .|..+.+.+|++++|.|.+.|.|.|.+.|++++..+..                             .
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            4676643     35677899999999999999999999999997654422                             1


Q ss_pred             CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095         110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus       110 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      .++.+........|.|.+++.+|+|.|+|.+.|..|...+.+.|.|.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            23455555667889999999999999999999999999888888875

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.3e-14  Score=93.12  Aligned_cols=86  Identities=20%  Similarity=0.389  Sum_probs=69.6

Q ss_pred             eEecCCc-eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          68 FYAVPHN-KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        68 ~~~~~~~-~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      +...|.. ..+.+|+++.|.|.+.|.|.|.+.|++++..+....   ........+|.|.+++.+|+|.|+|.+.|..|.
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~   79 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK   79 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCE
Confidence            4445544 456789999999999999999999999877654332   223355678999999999999999999999999


Q ss_pred             EEEEEEEEEE
Q psy1095         147 VEATARLEIM  156 (325)
Q Consensus       147 ~~~~~~l~v~  156 (325)
                      ....+.|.|.
T Consensus        80 ~~~~~~v~V~   89 (90)
T d1vcaa2          80 LEKGIQVEIY   89 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8888888875

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-14  Score=98.57  Aligned_cols=94  Identities=18%  Similarity=0.249  Sum_probs=74.4

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecC---CCeeEEeeCCeeCCC---CCcEEEEe------cCCeEEEEEccCCCCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKDGKPATP---NARVTIRE------KEDLRFLEISEVTLED  132 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p---~~~v~W~~~~~~~~~---~~~~~~~~------~~~~~~l~i~~~~~~d  132 (325)
                      .|.|+..|.+..+.+|++++|.|.+.|.|   .|.|.|++++.....   ..++....      ......|.|.+++..|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            35788889999999999999999999988   578999998754322   12222221      1124579999999999


Q ss_pred             CeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095         133 AGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       133 ~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      +|.|+|.+.|..|...+.+.|.|...
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEec
Confidence            99999999999999999999998753

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.57  E-value=1.2e-14  Score=99.12  Aligned_cols=93  Identities=28%  Similarity=0.423  Sum_probs=69.8

Q ss_pred             CCCeeEec-CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC----CC--cEE-------EEecCCeEEEEEccCC
Q psy1095          64 SSPRFYAV-PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP----NA--RVT-------IREKEDLRFLEISEVT  129 (325)
Q Consensus        64 ~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~----~~--~~~-------~~~~~~~~~l~i~~~~  129 (325)
                      .+|.|... |.+.++.+|+++.|.|.+.|.|.|.|.|+|++.....    ..  ...       .........|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            45777654 7889999999999999999999999999987543211    10  111       1111224679999999


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095         130 LEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      .+|+|.|+|.+.|..|...+++.|.|.
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999998888888773

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.56  E-value=5.2e-15  Score=98.47  Aligned_cols=82  Identities=24%  Similarity=0.410  Sum_probs=67.3

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ..+..|+.+.|.|.+.|.|.  +.+.|++++.++....+........+     .+.|.|.++..+|+|.|+|.|.|..|.
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~--p~i~W~kng~~l~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~   87 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPM--PTMRWLKNGKEFKQEHRIGGYKVRNQ-----HWSLIMESVVPSDKGNYTCVVENEYGS   87 (97)
T ss_dssp             EEECTTCCEEEECCEEEESC--CEEEEEETTEECCGGGSTTCCEEEGG-----GTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             EEECCCCcEEEEEEEeEECC--CEEEEEECCEeccccCceeeEEEcCC-----cEEEEECCCCcccCEEEEEEEEECCCE
Confidence            45778999999999999998  89999999999876554332221111     248999999999999999999999999


Q ss_pred             EEeEEEEEE
Q psy1095         254 VVTSACLIV  262 (325)
Q Consensus       254 ~~~~~~l~v  262 (325)
                      ...++.|.|
T Consensus        88 ~~~~~~l~V   96 (97)
T d3dara1          88 INHTYHLDV   96 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            988888876

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.3e-14  Score=95.09  Aligned_cols=86  Identities=22%  Similarity=0.306  Sum_probs=68.7

Q ss_pred             CCeeEe-cCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          65 SPRFYA-VPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        65 ~p~~~~-~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ||.+.. .|....+.+|+++.|.|.+. +.|.+.+.|+|++..+.......  ..   .+|.|.+++.+|+|.|+|.+.|
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~--~~---~~L~i~~v~~~d~G~Y~C~a~N   75 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD--FN---GILTIRNVQPSDAGTYVCTGSN   75 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE--ET---TEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe--ec---eEEEEecCCcccCEEEEEEEEE
Confidence            344444 46677899999999999997 57889999999988776553221  11   3699999999999999999999


Q ss_pred             CCeeEEEEEEEEE
Q psy1095         143 NYGSVEATARLEI  155 (325)
Q Consensus       143 ~~~~~~~~~~l~v  155 (325)
                      ..|.....+.|.|
T Consensus        76 ~~G~~~~~~~l~V   88 (89)
T d1gl4b_          76 MFAMDQGTATLHV   88 (89)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9998888887776

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.4e-15  Score=95.10  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=63.7

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL  153 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  153 (325)
                      +..+.+|++++|.|.+.|.|.|.+.|++++..+..          +...|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~----------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v   77 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI   77 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE----------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeeccccee----------eeeeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence            44688999999999999999999999987654321          11359999999999999999999999999999998


Q ss_pred             EEECC
Q psy1095         154 EIMDP  158 (325)
Q Consensus       154 ~v~~~  158 (325)
                      .|...
T Consensus        78 ~V~~~   82 (84)
T d2nxyb2          78 VVLAF   82 (84)
T ss_dssp             CEECC
T ss_pred             EEEec
Confidence            88765

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-15  Score=100.33  Aligned_cols=89  Identities=20%  Similarity=0.248  Sum_probs=73.6

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCe-EEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAG-LYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~  143 (325)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+.....  .........|.|.+++.+|.| .|+|.+.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcC
Confidence            68899899999999999999999999999999999999877643211  122344567999999999999 799999999


Q ss_pred             CeeEEEEEEEEE
Q psy1095         144 YGSVEATARLEI  155 (325)
Q Consensus       144 ~~~~~~~~~l~v  155 (325)
                      .|....++.|.|
T Consensus        80 ~G~~~~s~~l~V   91 (92)
T d2ifga1          80 VGRAEVSVQVNV   91 (92)
T ss_dssp             TEECCEEECCCC
T ss_pred             CCEEEEEEEEEE
Confidence            998877766554

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.4e-15  Score=104.95  Aligned_cols=114  Identities=18%  Similarity=0.229  Sum_probs=80.3

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      +....+..|+.+.|.|.+.|.|.  +.+.|++++..+.........                 ........         
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~--p~i~W~~~~~~~~~~~~~~~~-----------------~~~~~~~~---------   67 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPA--PTVIWQKAITQGNKAPARPAP-----------------DAPEDTGD---------   67 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSC--CEEEEEEECCCSCSSCCCCCC-----------------CCCCCCCC---------
T ss_pred             CCCEEEEcCCeEEEEEEEEEecC--CeEEEeeCCeEccCCccceee-----------------eccccccc---------
Confidence            34567889999999999999998  899999988776543322111                 00000000         


Q ss_pred             CCcEEeEEEEEEEeeCCeecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEe
Q psy1095         251 LGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE  320 (325)
Q Consensus       251 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  320 (325)
                              ...++......+..+++..+....+...|.|.++..+|+|.|+|.|.|..|..++.+.|.|.
T Consensus        68 --------~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          68 --------SDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             --------SSCCCCSCCCCCSCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             --------ceeeecCCceeeccCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence                    00011122223334566677778888899999999999999999999999999999999885

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=95.71  Aligned_cols=85  Identities=21%  Similarity=0.362  Sum_probs=67.4

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+.+|+.+.|.|.+.+.|+  +.+.|++++..+.............    ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus         4 ~~~~v~~G~~~~l~C~v~g~p~--p~v~W~k~g~~l~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~   77 (91)
T d1rhfa1           4 VKLTVSQGQPVKLNCSVEGMEE--PDIQWVKDGAVVQNLDQLYIPVSEQ----HWIGFLSLKSVERSDAGRYWCQVEDGG   77 (91)
T ss_dssp             EEEEEETTCCEEEEEEEESCSS--CCEEEEETTEECCSSEEEEEEEETT----EEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred             eeEEEcCCCeEEEEEEEEecCC--ceEEEEEeecccccceeeeeeeccc----CceeeEEECCCCcccCEEEEEEEEECC
Confidence            4567889999999999999988  8999999999887654433222222    245689999999999999999999999


Q ss_pred             CcE-EeEEEEEE
Q psy1095         252 GEV-VTSACLIV  262 (325)
Q Consensus       252 ~~~-~~~~~l~v  262 (325)
                      |.. +..+.|.|
T Consensus        78 G~~~S~~~~l~V   89 (91)
T d1rhfa1          78 ETEISQPVWLTV   89 (91)
T ss_dssp             TCEECCCEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            975 44677766

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-14  Score=96.02  Aligned_cols=94  Identities=19%  Similarity=0.246  Sum_probs=74.3

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec-----CCeEEEEEccCCCCCCeEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-----EDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      ..||.+.....   ...++...|.|.+.|.|.|.+.|++++..+..+.+......     .....|.|.+++..|+|.|+
T Consensus         2 ~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (103)
T d1wwbx_           2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             ccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence            35777654322   23578889999999999999999999999987765544321     12357999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEECCC
Q psy1095         138 IKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      |.+.|..|...+.+.|.|...|
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          79 LIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSCCC
T ss_pred             EEEeccCCEEEEEEEEEEEeCC
Confidence            9999999999999888887653

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.55  E-value=9.3e-15  Score=96.75  Aligned_cols=83  Identities=20%  Similarity=0.266  Sum_probs=69.0

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      +|.|...|.+..+.+|+.+.|.|.+.|.|.| .+.|++++..+.......... ....+|.|.++..+|+|.|+|.+.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-KDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC-TTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec-ccceEEEEeccChhcCeEEEEEEEeC
Confidence            6888888999999999999999999998866 699999999886554333222 33356999999999999999999999


Q ss_pred             CeeEE
Q psy1095         144 YGSVE  148 (325)
Q Consensus       144 ~~~~~  148 (325)
                      .|...
T Consensus        81 ~G~~~   85 (94)
T d1biha1          81 AGVAS   85 (94)
T ss_dssp             TEEEE
T ss_pred             CCEEE
Confidence            98643

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.54  E-value=1.7e-14  Score=95.94  Aligned_cols=86  Identities=24%  Similarity=0.352  Sum_probs=67.4

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      +.+..+..|+.+.|.|.+.|.|.  +.+.|++++..+..............    ....|.|.+++.+|+|.|+|.|.|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~--~~v~W~k~g~~i~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~   83 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPM--GYPNYFKNGKDVNGNPEDRITRHNRT----SGKRLLFKTTLPEDEGVYTCEVDNG   83 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSC--CCCEEEETTEECCCCTTSSEESCSSS----TTSEEEESSCCGGGCEEEEEEECCS
T ss_pred             CCCEEEecCCeEEEEEEEEEecC--CEEEEEEeeeeccccceeeeeeeeec----CCCEEEEEeccccccEEEEEEEEEC
Confidence            35678899999999999999988  88999999999876554433211111    2247999999999999999999999


Q ss_pred             CCcEE-eEEEEEE
Q psy1095         251 LGEVV-TSACLIV  262 (325)
Q Consensus       251 ~~~~~-~~~~l~v  262 (325)
                      .|... .++.|.|
T Consensus        84 ~G~~~s~s~~L~V   96 (97)
T d1biha3          84 VGKPQKHSLKLTV   96 (97)
T ss_dssp             SSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            99754 4677776

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1e-13  Score=94.43  Aligned_cols=99  Identities=16%  Similarity=0.202  Sum_probs=75.0

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCC-CCceE--EEecCCcceeEEEEEeCCCCCCCC
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDS-DMKPE--VQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      +.|...+....+..|+++.|.|.+.|.|.. .+.+.|++++....... .....  ...........+.|.|.+++.+|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            566777788899999999999999998842 27899999875433222 11111  112222334567899999999999


Q ss_pred             eEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         241 GEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |.|+|.|.|..|....++.|.|.
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEEEEEEEECCCeEEEEEEEEEE
Confidence            99999999999999999999884

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-15  Score=97.03  Aligned_cols=73  Identities=23%  Similarity=0.308  Sum_probs=62.3

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA  151 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  151 (325)
                      |....+.+|+.+.|.|.+.|.|.|.++|+|++..+....             .+.+++.+|+|.|.|.+.|..|.....+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~   77 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREV   77 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEEE
Confidence            567789999999999999999999999999987765432             2345788999999999999999888888


Q ss_pred             EEEEEC
Q psy1095         152 RLEIMD  157 (325)
Q Consensus       152 ~l~v~~  157 (325)
                      .|.|..
T Consensus        78 ~l~V~~   83 (84)
T d2oz4a3          78 TVNVLS   83 (84)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888865

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.4e-14  Score=94.97  Aligned_cols=95  Identities=19%  Similarity=0.312  Sum_probs=73.2

Q ss_pred             cCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEe--cC--CeEEEEEccCCCCCCeEEE
Q psy1095          62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE--KE--DLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        62 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~--~~~~l~i~~~~~~d~G~Y~  137 (325)
                      +..||.+....+.   ..+....|.|.+.|.|.|.+.|+++++++....+.....  ..  ....|.|.+++.+|+|.|+
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            4567776543322   234556788899999999999999999998776554432  22  2356999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEECCC
Q psy1095         138 IKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       138 C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      |.+.|..|...+.+.|.|...|
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEEEETTEEEEEEEEECCSCCC
T ss_pred             EEEEcCCCEEEEEEEEEEEeCC
Confidence            9999999999999888887653

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=9.5e-14  Score=92.27  Aligned_cols=90  Identities=28%  Similarity=0.523  Sum_probs=70.1

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCC-CeeEEee-CCeeCCC-CCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPA-PWTSWSK-DGKPATP-NARVTIR-EKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+.+.|....+.+|+++.|.|.+.|.|. +.+.|++ ++..+.. ..++... ......+|.|.+++.+|+|.|+|.+.|
T Consensus         2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   81 (97)
T d1epfa1           2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA   81 (97)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEe
Confidence            3566788888999999999999999874 7999998 4554443 3455443 335567899999999999999999999


Q ss_pred             CCeeE-EEEEEEEEE
Q psy1095         143 NYGSV-EATARLEIM  156 (325)
Q Consensus       143 ~~~~~-~~~~~l~v~  156 (325)
                      ..|.. .+.+.|.|.
T Consensus        82 ~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          82 EDGTQSEATVNVKIF   96 (97)
T ss_dssp             TTTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEEE
Confidence            98854 456777764

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=1.4e-14  Score=96.37  Aligned_cols=89  Identities=22%  Similarity=0.361  Sum_probs=69.9

Q ss_pred             CCCeeEecCCceEecCC---CeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLG---DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g---~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      .+|.|...|.+..+.+|   +++.|.|.+.|.|.|.++|++++..+...........++ ..|.|..+...|+|.|+|.+
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEEE
Confidence            36888888988877665   789999999999999999999999986654333333333 46888889999999999999


Q ss_pred             EeCCeeEE-EEEEE
Q psy1095         141 ENNYGSVE-ATARL  153 (325)
Q Consensus       141 ~~~~~~~~-~~~~l  153 (325)
                      .|..|... ..+.|
T Consensus        82 ~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          82 TNARGTVVSREASL   95 (97)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EECCCEEEEEEEEE
Confidence            99999653 23443

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.2e-14  Score=95.50  Aligned_cols=100  Identities=14%  Similarity=0.173  Sum_probs=73.7

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEecc---CCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKL---DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      |...+....+.+|+.+.|.|.+.|.|.. .+.+.|++++.....   ..................+.|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            3445567889999999999999998842 279999998654321   112222222223334456789999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEEeeC
Q psy1095         243 FTCRVANELGEVVTSACLIVDVVK  266 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~~~~  266 (325)
                      |+|.|.|..|.....+.|.|...+
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCC
Confidence            999999999999999999985443

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.4e-13  Score=91.46  Aligned_cols=89  Identities=22%  Similarity=0.272  Sum_probs=64.0

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC-CEEeccCC-CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN-NRLIKLDS-DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR  246 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  246 (325)
                      ..+....+..|+.+.|.|.+.+.|+. +.+.|+++ +..+.... +.... ....    ..+.|.|.+++.+|+|.|+|.
T Consensus         5 i~P~~~~v~~G~~~~l~C~v~g~p~~-~~v~W~~~~g~~~~~~~~~~~~~-~~~~----~~~~L~I~~~~~~D~G~Y~C~   78 (97)
T d1epfa1           5 IVPSQGEISVGESKFFLCQVAGDAKD-KDISWFSPNGEKLSPNQQRISVV-WNDD----DSSTLTIYNANIDDAGIYKCV   78 (97)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCC-CEEEEECTTSCEECCBSSSEEEE-EEET----TEEEEEECSCCGGGCEEEEEE
T ss_pred             EECCCEEEccCCcEEEEEEEEeccCC-CEEEEEEeeeeeeeeccccEEEE-eecC----cceEEEcccCchhhceEEEEE
Confidence            33456778999999999999988753 68999994 44443322 22222 1112    346899999999999999999


Q ss_pred             EEeCCCcEE-eEEEEEEE
Q psy1095         247 VANELGEVV-TSACLIVD  263 (325)
Q Consensus       247 ~~~~~~~~~-~~~~l~v~  263 (325)
                      |.|..|... .++.|.|.
T Consensus        79 a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          79 VTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEETTTEEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEEE
Confidence            999998653 45666663

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-13  Score=92.84  Aligned_cols=94  Identities=20%  Similarity=0.336  Sum_probs=69.8

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEe----ccCCCCceEEEecCCcceeEEEEEeCCCC-CC
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI----KLDSDMKPEVQVDSKENLVIARLKIPHVY-PE  238 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~  238 (325)
                      +|.+...+....+.+|+.+.|.|.+.+.|++ ..+.|++++...    ......+......+    ..+.|.|.++. .+
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p-~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~~   76 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAWYKITDSEDKALMNGSESRFFVSSSQ----GRSELHIENLNMEA   76 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCC-CEEEEEECCSSSCEECCTTGGGTEEEEEET----TEEEEEECSCCTTT
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCe-eEEEEEeccceeeeecccCCCceEEEEeCC----CEEEEEEecccccc
Confidence            4666666677788999999999999998873 379999865322    22222222222222    35789999998 57


Q ss_pred             CCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         239 DEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       239 d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |+|.|+|.|.|..|.....+.|.|
T Consensus        77 D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          77 DPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEEEECCCEEEEEEEEEE
Confidence            999999999999999988888876

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.1e-14  Score=90.35  Aligned_cols=82  Identities=16%  Similarity=0.210  Sum_probs=63.4

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.|...+.+..+.+|+.+.|.|.+.|.|.+ ..+.|++++..+.....               ..+.|.....+|+|.|+
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P-~~i~W~k~g~~i~~~~~---------------~~~~l~~~~~~d~G~Y~   65 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEP-VTIVWWRGTTKIGGPAP---------------SPSVLNVTGVTQSTMFS   65 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSC-CEEEEEETTEECSCSEE---------------SSEEEEECCCSSCEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcc-eEEEEEECCEECCCCCC---------------cceEEecCCccccEEEE
Confidence            677777888899999999999999999872 38999999998764321               12445555567999999


Q ss_pred             EEEEeCCCcEE-eEEEEEE
Q psy1095         245 CRVANELGEVV-TSACLIV  262 (325)
Q Consensus       245 C~~~~~~~~~~-~~~~l~v  262 (325)
                      |.|.|..|... ..+.|.|
T Consensus        66 C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          66 CEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEEEETTEEEECCCEEEEE
T ss_pred             EEEEcCCCcEEEEEEEEEE
Confidence            99999999654 3566655

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.7e-14  Score=93.42  Aligned_cols=79  Identities=24%  Similarity=0.366  Sum_probs=63.7

Q ss_pred             CcCeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         171 LENLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      +....+.+|+.+.|.|.+.+ .|.  +.+.|++++..+.....    ....       ..|.|.+++.+|+|.|+|.|.|
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~--~~v~W~k~~~~~~~~~~----~~~~-------~~L~i~~v~~~d~G~Y~C~a~N   75 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPA--YTLVWTRLHNGKLPSRA----MDFN-------GILTIRNVQPSDAGTYVCTGSN   75 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSC--CEEEEEEGGGBCCCTTE----EEET-------TEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCC--CEEEEecCCceeecccc----Eeec-------eEEEEecCCcccCEEEEEEEEE
Confidence            34567889999999999985 445  89999998877654321    1123       3799999999999999999999


Q ss_pred             CCCcEEeEEEEEE
Q psy1095         250 ELGEVVTSACLIV  262 (325)
Q Consensus       250 ~~~~~~~~~~l~v  262 (325)
                      ..|.....+.|.|
T Consensus        76 ~~G~~~~~~~l~V   88 (89)
T d1gl4b_          76 MFAMDQGTATLHV   88 (89)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9999888888876

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.8e-14  Score=92.01  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=62.4

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +..+.+|+.++|.|.+.|.|+  |.+.|++++..+...         .       ..|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~--P~i~W~~~~~~~~~~---------~-------~~l~i~~v~~~DsG~Y~C~a~N~~g   69 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSS--PSVQCRSPRGKNIQG---------G-------KTLSVSQLELQDSGTWTCTVLQNQK   69 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCC--CEEEEECTTCCEEEE---------S-------SEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEECCCeEEEEEEeEcCCc--hheEEEeecccceee---------e-------eeeeeeecccccccEEEEEEEeCCC
Confidence            456889999999999999998  999999977654321         1       3799999999999999999999999


Q ss_pred             cEEeEEEEEEE
Q psy1095         253 EVVTSACLIVD  263 (325)
Q Consensus       253 ~~~~~~~l~v~  263 (325)
                      .....+.|.|.
T Consensus        70 ~~~~~~~v~V~   80 (84)
T d2nxyb2          70 KVEFKIDIVVL   80 (84)
T ss_dssp             EEEEEEEECEE
T ss_pred             EEEEEEEEEEE
Confidence            99888888874

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5e-14  Score=92.22  Aligned_cols=79  Identities=15%  Similarity=0.144  Sum_probs=63.8

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ..+..|+.+.|.|.+.|.|+  +.+.|++++..+.....   .  ...    ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~~---~--~~~----~~~~L~I~~v~~~d~G~Y~C~a~N~~g~   79 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCES--PFFSWRTQIDSPLNGKV---T--NEG----TTSTLTMNPVSFGNEHSYLCTATCESRK   79 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSS--CEEEEEETTCCCCSSEE---E--EET----TEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             EEEECCCEEEEEEeccCCCC--ceEEEEecCccceeeee---e--eec----CCcEEEEecccccccceEEEEEEeCCCE
Confidence            34578999999999999998  89999998765432211   1  111    3468999999999999999999999999


Q ss_pred             EEeEEEEEEE
Q psy1095         254 VVTSACLIVD  263 (325)
Q Consensus       254 ~~~~~~l~v~  263 (325)
                      ...++.|.|.
T Consensus        80 ~~~~~~v~V~   89 (90)
T d1vcaa2          80 LEKGIQVEIY   89 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9999888874

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.50  E-value=1.1e-13  Score=94.20  Aligned_cols=98  Identities=29%  Similarity=0.342  Sum_probs=69.0

Q ss_pred             CCCeeeec-CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC----CCCceEEE---ecCCcceeEEEEEeCC
Q psy1095         163 SRPKVLNG-LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD----SDMKPEVQ---VDSKENLVIARLKIPH  234 (325)
Q Consensus       163 ~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~l~i~~  234 (325)
                      .+|.+... +....+..|+++.|.|.+.|.|.  +.+.|++++......    ........   .........+.|.|.+
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~   80 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQ--PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN   80 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSC--CEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECS
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCC--CeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECC
Confidence            34666554 46788999999999999999998  899999876443211    11011100   0001122457899999


Q ss_pred             CCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         235 VYPEDEGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      ++.+|+|.|+|.|.|..|....++.|.|
T Consensus        81 ~~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          81 VTFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999999999988877

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=8.3e-14  Score=92.39  Aligned_cols=89  Identities=20%  Similarity=0.322  Sum_probs=71.9

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      +|.+.  +.+..+.+|++++|.|.+.+ +.+.+.|++++..+....+..+....  .+|.|.+++.+|+|.|+|.+.|..
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~--~~L~I~~v~~~d~G~Y~C~a~N~~   79 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPV   79 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTT--TEEEECSCCGGGCEEEEEEEESSS
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCc--eEEEEeccchhhceEEEEEEEeCC
Confidence            35443  45667899999999999865 55789999999999888877765433  479999999999999999999988


Q ss_pred             eeEE-EEEEEEEECC
Q psy1095         145 GSVE-ATARLEIMDP  158 (325)
Q Consensus       145 ~~~~-~~~~l~v~~~  158 (325)
                      +... ..+.|.|...
T Consensus        80 g~~~S~~~~L~V~~~   94 (96)
T d1l6za2          80 SVRRSNSIKLDIIFD   94 (96)
T ss_dssp             CCEECCCCEEEECCS
T ss_pred             CCeEEEeEEEEEEcC
Confidence            8654 4578888765

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.50  E-value=1.7e-14  Score=95.48  Aligned_cols=84  Identities=14%  Similarity=0.270  Sum_probs=67.0

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.+ ..+.|+++|..+......... ...+      +.|.|.++..+|+|.|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p-~~v~W~~~g~~l~~~~~~~~~-~~~~------~~L~i~~v~~~D~G~Y   73 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQG-VKYSWKKDGKSYNWQEHNAAL-RKDE------GSLVFLRPQASDEGHY   73 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSS-CEEEEEESSSBCCTTTTTEEE-CTTS------CCEEESSCCGGGCEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCe-eEEEEEeeeeeeeeecceeee-cccc------eEEEEeccChhcCeEE
Confidence            3677777778889999999999999998863 579999999988655443222 1222      4799999999999999


Q ss_pred             EEEEEeCCCcEE
Q psy1095         244 TCRVANELGEVV  255 (325)
Q Consensus       244 ~C~~~~~~~~~~  255 (325)
                      +|.|.|..|...
T Consensus        74 ~C~a~N~~G~~~   85 (94)
T d1biha1          74 QCFAETPAGVAS   85 (94)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEeCCCEEE
Confidence            999999999754

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.4e-14  Score=98.27  Aligned_cols=92  Identities=17%  Similarity=0.238  Sum_probs=71.6

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecC---CCeeEEeeCCeeCC---CCCcEEEEe----c--CCeEEEEEccCCCCCCeE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKDGKPAT---PNARVTIRE----K--EDLRFLEISEVTLEDAGL  135 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p---~~~v~W~~~~~~~~---~~~~~~~~~----~--~~~~~l~i~~~~~~d~G~  135 (325)
                      |+..|.+..+.+|++++|.|.+.|.|   .|.|.|+|++....   ...++....    .  .....|.|.+++..|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            55678888999999999999999988   57999999865321   122222211    1  123569999999999999


Q ss_pred             EEEEEEeCCeeEEEEEEEEEECCC
Q psy1095         136 YTIKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       136 Y~C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      |+|.+.|..|...+.+.|.|...+
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCC
Confidence            999999999998888999997653

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.3e-14  Score=92.13  Aligned_cols=78  Identities=13%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             CeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...+.+|+.+.|.|.+. +.|.  +.|.|++.+..+..     ..  ...    ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~--p~v~W~~~~~~~~~-----~~--~~~----~~~~L~i~~v~~~D~G~Y~C~Asn~~   78 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRG--ASVQWRGLDTSLGA-----VQ--SDT----GRSVLTVRNASLSAAGTRVCVGSCGG   78 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTT--CEEEEESSTTTTCC-----EE--EES----SEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             eEEEEeCCcEEEEEEecCCCCc--cEEEEEEeeeeeee-----ee--ccC----ceeeEEcCccChhhCCcEEEEEEeCC
Confidence            35678999999999885 5666  89999987655421     11  111    34789999999999999999999999


Q ss_pred             CcEEeEEEEEEE
Q psy1095         252 GEVVTSACLIVD  263 (325)
Q Consensus       252 ~~~~~~~~l~v~  263 (325)
                      +....++.|.|+
T Consensus        79 g~~~~s~~l~Vy   90 (90)
T d1gsma1          79 RTFQHTVQLLVY   90 (90)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEC
Confidence            998888888773

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-13  Score=90.25  Aligned_cols=84  Identities=23%  Similarity=0.398  Sum_probs=67.6

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC--cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      |..++.+..+.+|+++.|.|.+. .|.+.+.|++++.++..+.  ++.+...+..+.|.|.+++.+|+|.|+|.+.|.  
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--   79 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG--   79 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE--
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc--
Confidence            34556788899999999999984 6888999999999886554  466666677889999999999999999999653  


Q ss_pred             eEEEEEEEEEE
Q psy1095         146 SVEATARLEIM  156 (325)
Q Consensus       146 ~~~~~~~l~v~  156 (325)
                        ..++.|.|.
T Consensus        80 --~~~a~l~V~   88 (90)
T d1x44a1          80 --QSSAKLSVD   88 (90)
T ss_dssp             --EEEEEEEEE
T ss_pred             --eEEEEEEEE
Confidence              345566664

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=4.8e-14  Score=93.76  Aligned_cols=89  Identities=25%  Similarity=0.419  Sum_probs=69.1

Q ss_pred             CCeeeecCcCeeEecC---CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         164 RPKVLNGLENLRCCDG---DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      +|.|...+.+..+..|   +.+.|.|.+.|.|.  +.+.|++++..+.......... ..+      ..|.|..+..+|+
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~--p~v~W~~ng~~i~~~~~~~~~~-~~~------~~l~i~~~~~~d~   74 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPP--ATYRWKMNGTELKMGPDSRYRL-VAG------DLVISNPVKAKDA   74 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESC--CEEEEEETTEECCCSTTSSEEE-ETT------EEEEESCCHHHHC
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCC--CEEEEEEeeeeccCCCCceEEe-eee------eEEEEecccccCC
Confidence            3666666667666665   78999999999998  8999999999987665544432 223      4788899999999


Q ss_pred             eEEEEEEEeCCCcEEe-EEEEE
Q psy1095         241 GEFTCRVANELGEVVT-SACLI  261 (325)
Q Consensus       241 G~Y~C~~~~~~~~~~~-~~~l~  261 (325)
                      |.|+|.|.|..|...+ .+.|.
T Consensus        75 G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          75 GSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEEe
Confidence            9999999999997643 55553

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.49  E-value=6.4e-14  Score=91.01  Aligned_cols=81  Identities=12%  Similarity=0.168  Sum_probs=62.3

Q ss_pred             EecCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      ++.+....+.+|++++|.|.+.+ .|.+.+.|||++..+...        .....|.|.+++.+|+|.|.|.+.|..+..
T Consensus         4 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~--------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2           4 VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS--------RSDPNFSIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             EEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------SSCCEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             EEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc--------ccccccccCccCHHHCCeEEEEEEeCCCCE
Confidence            44555566889999999999965 466789999999876321        223469999999999999999999988764


Q ss_pred             E-EEEEEEEEC
Q psy1095         148 E-ATARLEIMD  157 (325)
Q Consensus       148 ~-~~~~l~v~~  157 (325)
                      . ..+.|.|..
T Consensus        76 ~S~~v~l~V~~   86 (88)
T d2fcba2          76 SSKPVTITVQA   86 (88)
T ss_dssp             ECCCEEEEECC
T ss_pred             EeeeEEEEEeC
Confidence            3 456777754

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.2e-15  Score=97.10  Aligned_cols=88  Identities=20%  Similarity=0.253  Sum_probs=70.3

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe-EE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG-EF  243 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y  243 (325)
                      |.+...+....+.+|+.+.|.|.+.|.|.  +.+.|++++..+.......        .......|.|.+++.+|.| .|
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~~~~~~~~~~~~--------~~~~~~~L~i~~~~~~d~G~~Y   72 (92)
T d2ifga1           3 PTLKVQVPNASVDVGDDVLLRCQVEGRGL--EQAGWILTELEQSATVMKS--------GGLPSLGLTLANVTSDLNRKNV   72 (92)
T ss_dssp             CEEEEECCSSCCBTTCCEEEEEEEECSSC--CCCCEEESCCCSSEEECCC--------CCSSEEEEEEESCCSTTTTCCE
T ss_pred             CEEEEeCCCEEEeCCCEEEEeeeccCCCC--cEEEEEECCceeeeeeeee--------eeccceeEEEccccccccceEE
Confidence            67777777888999999999999999998  8999999987654321111        1113468999999999999 79


Q ss_pred             EEEEEeCCCcEEeEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIV  262 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v  262 (325)
                      +|.|.|..|....++.|.|
T Consensus        73 ~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          73 TCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             EECCEETTEECCEEECCCC
T ss_pred             EEEEEcCCCEEEEEEEEEE
Confidence            9999999999888777654

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-13  Score=92.60  Aligned_cols=89  Identities=24%  Similarity=0.305  Sum_probs=69.2

Q ss_pred             CCceEecCCCeEE---EEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecC-------CeEEEEEccCCCCCCeEEEEEEE
Q psy1095          72 PHNKICDLGDTVR---FQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE-------DLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        72 ~~~~~v~~g~~v~---l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      |....+.+|..+.   |.|.+.|.|.|.+.|++++.++....+.......       ....|.|.++...|+|.|+|.+.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            4445555555555   4557899999999999999999876655443211       13569999999999999999999


Q ss_pred             eCCeeEEEEEEEEEECCCc
Q psy1095         142 NNYGSVEATARLEIMDPRA  160 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~~~~~  160 (325)
                      |..|...+.+.|.|..+|.
T Consensus        84 N~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          84 NPFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             ETTEEEEEEEEECCCSCTT
T ss_pred             eCCCEEEEEEEEEEEcCCC
Confidence            9999999999998887653

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-13  Score=92.15  Aligned_cols=94  Identities=18%  Similarity=0.346  Sum_probs=67.7

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCc-eEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK-PEVQVDSKENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      +...+....+..|+.+.|.|.+.+.|.. |.+.|+|++..+....... ......  .......|.|.+++.+|+|.|+|
T Consensus         6 fi~~~~~~~v~~G~~v~L~C~v~g~p~~-P~v~W~k~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C   82 (104)
T d2aw2a1           6 YIKRQSEHSILAGDPFELECPVKYCANR-PHVTWCKLNGTTCVKLEDRQTSWKEE--KNISFFILHFEPVLPNDNGSYRC   82 (104)
T ss_dssp             CCCTTEEEEEETTSCEEEEEEEECSSSC-CEEEEEEECSSCEEECCSSCEEEEEC--SSCEEEEEEESSCCGGGCEEEEE
T ss_pred             EEecCCeEEEeCCCeEEEEEEEEeeCCC-CEEEEEecCcccccccceeeeeEEec--CCceEEEEEEccccHHHCCeEEE
Confidence            3444456788999999999999998843 7999999887654322222 111111  12234679999999999999999


Q ss_pred             EEEeCCCcEE-eEEEEEEE
Q psy1095         246 RVANELGEVV-TSACLIVD  263 (325)
Q Consensus       246 ~~~~~~~~~~-~~~~l~v~  263 (325)
                      .|.|..|... .++.|.|.
T Consensus        83 ~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          83 SANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEETTEEEECCCEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEEEE
Confidence            9999999765 46777764

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-13  Score=91.72  Aligned_cols=91  Identities=18%  Similarity=0.298  Sum_probs=68.3

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecC-CCeeEEeeCCeeCCC---CCcEEEEecC--CeEEEEEccCCCCCCeEEEEEE
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSKDGKPATP---NARVTIREKE--DLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~~~~~~~~~---~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      .++..+....+.+|+++.|.|.+.|.| .|.++|+|++..+..   .........+  ....|.|.+++.+|+|.|+|.+
T Consensus         5 ~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           5 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             ECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence            445566777899999999999999988 589999998765521   2222222222  2456999999999999999999


Q ss_pred             EeCCeeEE-EEEEEEEEC
Q psy1095         141 ENNYGSVE-ATARLEIMD  157 (325)
Q Consensus       141 ~~~~~~~~-~~~~l~v~~  157 (325)
                      .|..|... ..+.|.|.+
T Consensus        85 ~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          85 NFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEEE
Confidence            99998754 467777754

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-13  Score=91.19  Aligned_cols=90  Identities=20%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEee--C-CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK--D-GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~--~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++  . +..+.......+.......+|.|.++..+|+|.|+|.+.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            57776 5888999999999999999999988665543  2 222222222222323334679999999999999999999


Q ss_pred             eCCeeEE-EEEEEEE
Q psy1095         142 NNYGSVE-ATARLEI  155 (325)
Q Consensus       142 ~~~~~~~-~~~~l~v  155 (325)
                      |..|... ..+.|.|
T Consensus        81 N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          81 TEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEE
Confidence            9999754 4467665

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-13  Score=89.08  Aligned_cols=82  Identities=13%  Similarity=0.137  Sum_probs=64.0

Q ss_pred             EecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      ++.+....+.+|++++|.|.+.+. +...+.|||+|..+....        ....|.|.+++.+|+|.|+|.+.|..+..
T Consensus         4 ilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~   75 (89)
T d1f2qa2           4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDY   75 (89)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence            445556668999999999999664 556899999999886432        12359999999999999999999987754


Q ss_pred             -EEEEEEEEECC
Q psy1095         148 -EATARLEIMDP  158 (325)
Q Consensus       148 -~~~~~l~v~~~  158 (325)
                       +..+.|.|...
T Consensus        76 ~S~~v~i~V~~~   87 (89)
T d1f2qa2          76 ESEPLNITVIKA   87 (89)
T ss_dssp             ECCCEEEEEECS
T ss_pred             EeeeEEEEEEeC
Confidence             35677787765

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.47  E-value=6.6e-14  Score=91.09  Aligned_cols=82  Identities=16%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             eEecCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      +++.+....+.+|++++|.|.+.+ .|.+.+.|||++..+...      .  ....|.|.+++.+|+|.|+|.+.|..+.
T Consensus         5 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------~--~~~~l~I~~v~~~dsG~Y~C~a~n~~~~   76 (89)
T d1fnla2           5 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------H--HNSDFHIPKATLKDSGSYFCRGLVGSKN   76 (89)
T ss_dssp             EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------E--ECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------c--cccccEECccceeccceEEEEEEeCCCC
Confidence            345556666889999999999864 566789999999876421      1  1124899999999999999999998875


Q ss_pred             EE-EEEEEEEEC
Q psy1095         147 VE-ATARLEIMD  157 (325)
Q Consensus       147 ~~-~~~~l~v~~  157 (325)
                      .. ..+.|.|.+
T Consensus        77 ~~S~~v~itV~E   88 (89)
T d1fnla2          77 VSSETVNITITQ   88 (89)
T ss_dssp             EECCCEEEEEEC
T ss_pred             eEEeeEEEEEEe
Confidence            43 456666653

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-13  Score=89.20  Aligned_cols=84  Identities=25%  Similarity=0.379  Sum_probs=66.4

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  248 (325)
                      ..+.+..+.+|+.+.|.|.+. .|+  +.+.|++++..+..+.........++    ....|.|.+++.+|+|.|+|.|.
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~-~p~--~~v~W~k~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~   77 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVS-EDD--ANVKWFKNGEEIIPGPKSRYRIRVEG----KKHILIIEGATKADAAEYSVMTT   77 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECS-SSS--CCCEEEETTEECCCSTTCSEEEEEET----TEEEEEEEEECTTTCSEEEEEET
T ss_pred             cCCCCEEEeCCCcEEEEEEEC-CCC--ceEEEEEeecccCCCCCccEEEEEeC----CccEEEECccccccCEEEEEEEe
Confidence            345678899999999999984 555  78999999999877766555544544    45789999999999999999985


Q ss_pred             eCCCcEEeEEEEEEE
Q psy1095         249 NELGEVVTSACLIVD  263 (325)
Q Consensus       249 ~~~~~~~~~~~l~v~  263 (325)
                      |    ...++.|.|.
T Consensus        78 n----~~~~a~l~V~   88 (90)
T d1x44a1          78 G----GQSSAKLSVD   88 (90)
T ss_dssp             T----EEEEEEEEEE
T ss_pred             c----ceEEEEEEEE
Confidence            5    4566777774

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.46  E-value=1.1e-14  Score=94.96  Aligned_cols=84  Identities=19%  Similarity=0.288  Sum_probs=71.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      |..++.+..+.+|+++.|.|.+ +.|.|.+.|+++|.++..+.++.+...++.+.|.|.+++.+|+|.|+|.+.|..+  
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~--   80 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS--   80 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC--
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE--
Confidence            4456678889999999999997 5788899999999999998999998888889999999999999999999866433  


Q ss_pred             EEEEEEEEE
Q psy1095         148 EATARLEIM  156 (325)
Q Consensus       148 ~~~~~l~v~  156 (325)
                        ++.|.|.
T Consensus        81 --sa~l~V~   87 (89)
T d1tiua_          81 --AANLKVK   87 (89)
T ss_dssp             --CEEEEEE
T ss_pred             --EEEEEEE
Confidence              3455554

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-13  Score=91.70  Aligned_cols=86  Identities=15%  Similarity=0.108  Sum_probs=67.4

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      .+....|.|.+.|.|.  +.+.|++++..+..+..........  .....+.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus        16 ~~~~~~i~~~v~G~P~--P~v~W~~n~~~i~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   91 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPP--PTLHWLHNGQPLRESKIIHVEYYQE--GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT   91 (105)
T ss_dssp             CCCEEEEEEEEECSSC--CEEEEEETTEECCCSSSEEEEEEEC--SSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEEEEEEEeCC--CeEEEEeCccccCCCcceeeeEEee--cccceEEEEEeecccccceEEEEEEEcCCCEEEEE
Confidence            3455678889999998  8999999999987765544332222  22345789999999999999999999999999999


Q ss_pred             EEEEEEeeCC
Q psy1095         258 ACLIVDVVKG  267 (325)
Q Consensus       258 ~~l~v~~~~~  267 (325)
                      +.|.|...++
T Consensus        92 ~~v~V~~~P~  101 (105)
T d1wwca_          92 INGHFLKEPF  101 (105)
T ss_dssp             EEECCSCCCC
T ss_pred             EEEEEEeCCC
Confidence            8888854443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.8e-13  Score=89.69  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS  257 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  257 (325)
                      .++...|.|.+.|.|+  +.+.|++++..+..+.......... ......+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        15 ~~~~~~i~~~v~G~P~--P~i~W~~~g~~l~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   91 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPK--PALQWFYNGAILNESKYICTKIHVT-NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             CCCEEEEEEEEECSSC--CEEEEEETTEEECCCSSEEEEEEEE-CSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             cceeEEEEEEEEEeCC--CEEEEEECCEEeeeeeeeeeeeccc-ccccceEEEEECCCCHHhCceEEEEEeccCCEEEEE
Confidence            5777889999999998  8999999999998665544332211 122245789999999999999999999999999998


Q ss_pred             EEEEEEeeCC
Q psy1095         258 ACLIVDVVKG  267 (325)
Q Consensus       258 ~~l~v~~~~~  267 (325)
                      +.|.|...++
T Consensus        92 ~~v~V~~~P~  101 (103)
T d1wwbx_          92 ISAHFMGWPG  101 (103)
T ss_dssp             EEECCSCCCC
T ss_pred             EEEEEEeCCC
Confidence            8888754443

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.3e-14  Score=93.21  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=64.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCC-CeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPA-PWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.+...+....+.+|+++.|.|.+.+.|. +.++|+|++..+....+......   .+|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG---RRLLLRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEES---SEEEECSCCGGGCEEEEEESSS
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCC---CEEEECCCChhcCEEEEEEECC
Confidence            4688888888889999999999999988664 58999999998876655443332   3699999999999999999976


Q ss_pred             CC
Q psy1095         143 NY  144 (325)
Q Consensus       143 ~~  144 (325)
                      ..
T Consensus        82 ~~   83 (93)
T d1n26a1          82 RP   83 (93)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.5e-13  Score=88.76  Aligned_cols=88  Identities=18%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             CCCeeEecCCc-eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYAVPHN-KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+|.|.....+ ..+.+|+++.|.|.+. .|.+.+.||+++..+..+ .++.+...++...|.|.++...|+|.|+|.+.
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            35556555544 4689999999999985 588899999999998654 46677777778899999999999999999995


Q ss_pred             eCCeeEEEEEEEEEE
Q psy1095         142 NNYGSVEATARLEIM  156 (325)
Q Consensus       142 ~~~~~~~~~~~l~v~  156 (325)
                      |.    ..+..|.|.
T Consensus        83 n~----~~s~~l~V~   93 (94)
T d1pd6a_          83 GE----KCSTELFVK   93 (94)
T ss_dssp             TE----EECCEEEEE
T ss_pred             eE----EEEEEEEEE
Confidence            52    334455553

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.2e-13  Score=94.26  Aligned_cols=93  Identities=23%  Similarity=0.347  Sum_probs=65.2

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEE--------EEecCCeEEEEEccCCCCCCeE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVT--------IREKEDLRFLEISEVTLEDAGL  135 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~  135 (325)
                      ||.+.....+..+.+|+++.|.|.+. |.|.+.++|++++..+.......        .........|.|.+++.+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            34443323334588999999999984 79999999999998775432211        1122234469999999999999


Q ss_pred             EEEEEEeCCeeEEE--EEEEEEEC
Q psy1095         136 YTIKVENNYGSVEA--TARLEIMD  157 (325)
Q Consensus       136 Y~C~~~~~~~~~~~--~~~l~v~~  157 (325)
                      |+|.+.|..|....  .+.|.|.+
T Consensus        82 Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          82 YYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             EEEEEECSSSCCEECCCEEEEEES
T ss_pred             EEEEEEECCCcEEEEEEEEEEEEe
Confidence            99999999886544  55666654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.44  E-value=2.8e-13  Score=87.90  Aligned_cols=75  Identities=16%  Similarity=0.364  Sum_probs=59.1

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+.+|+.++|.|.+.+.++. +.+.|+|++..+.....              ...|.|.+++.+|+|.|+|.|.|..+
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~-~~~~W~k~g~~~~~~~~--------------~~~l~i~~v~~~dsG~Y~C~a~n~~g   73 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPL-VKVTFFQNGKSKKFSRS--------------DPNFSIPQANHSHSGDYHCTGNIGYT   73 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCC-EEEEEEETTEEEEEESS--------------CCEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             CCeEecCCeEEEEEEecCCCCC-cEEEEEeeccccccccc--------------ccccccCccCHHHCCeEEEEEEeCCC
Confidence            4557899999999999766553 78999999988753221              13799999999999999999999988


Q ss_pred             cEE-eEEEEEE
Q psy1095         253 EVV-TSACLIV  262 (325)
Q Consensus       253 ~~~-~~~~l~v  262 (325)
                      ... ..+.|.|
T Consensus        74 ~~~S~~v~l~V   84 (88)
T d2fcba2          74 LYSSKPVTITV   84 (88)
T ss_dssp             EEECCCEEEEE
T ss_pred             CEEeeeEEEEE
Confidence            654 4556666

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.5e-13  Score=89.63  Aligned_cols=89  Identities=24%  Similarity=0.306  Sum_probs=68.8

Q ss_pred             CeeEecCCc-eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEe----c--C------CeEEEEEccCCCCC
Q psy1095          66 PRFYAVPHN-KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE----K--E------DLRFLEISEVTLED  132 (325)
Q Consensus        66 p~~~~~~~~-~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~--~------~~~~l~i~~~~~~d  132 (325)
                      |.+..++.. ..+.+|+++.|.|.+.+.|.|.+.|++++..+..........    .  .      ....|.|.+++..|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            666655543 457889999999999999999999999999886544222111    0  0      13579999999999


Q ss_pred             Ce-EEEEEEEeCCeeEEEEEEEE
Q psy1095         133 AG-LYTIKVENNYGSVEATARLE  154 (325)
Q Consensus       133 ~G-~Y~C~~~~~~~~~~~~~~l~  154 (325)
                      .| .|+|.+.|..|...+.+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999888777665

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.43  E-value=4.6e-14  Score=95.17  Aligned_cols=79  Identities=19%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             CCceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEE
Q psy1095          72 PHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT  150 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  150 (325)
                      +..+.+.+|+++.|.|.+ .+.|.+.+.|+|++..+...............+|.|.+++.+|+|.|+|.+.|..+.....
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            356789999999999997 6889999999999876643322222222233469999999999999999999877755443

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.42  E-value=3e-13  Score=87.88  Aligned_cols=77  Identities=16%  Similarity=0.271  Sum_probs=59.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+.+|+.++|.|.+.+.++. +.+.|+++|..+....       .       ...|.|.+++.+|+|.|+|.|.|..
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~-~~~~W~kng~~~~~~~-------~-------~~~l~I~~v~~~dsG~Y~C~a~n~~   74 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKDRKYFH-------H-------NSDFHIPKATLKDSGSYFCRGLVGS   74 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCC-EEEEEEETTEEEEEEE-------E-------CCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCeEccCCeEEEEEEecCCCCC-cEEEEEEcccccceec-------c-------ccccEECccceeccceEEEEEEeCC
Confidence            34568899999999998765553 6899999998765321       1       1378999999999999999999988


Q ss_pred             CcEE-eEEEEEEE
Q psy1095         252 GEVV-TSACLIVD  263 (325)
Q Consensus       252 ~~~~-~~~~l~v~  263 (325)
                      +... ..+.|.|.
T Consensus        75 ~~~~S~~v~itV~   87 (89)
T d1fnla2          75 KNVSSETVNITIT   87 (89)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CCeEEeeEEEEEE
Confidence            7654 35566653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.3e-12  Score=87.13  Aligned_cols=95  Identities=21%  Similarity=0.272  Sum_probs=69.3

Q ss_pred             CeeeecCc-CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEE--ecC----CcceeEEEEEeCCCCC
Q psy1095         165 PKVLNGLE-NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ--VDS----KENLVIARLKIPHVYP  237 (325)
Q Consensus       165 p~~~~~~~-~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~i~~~~~  237 (325)
                      |.+..... ...+..|+.+.|.|.+.+.|.  +.+.|++++..+...........  ...    ......+.|.|.+++.
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~--p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   79 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLS--DIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES   79 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTT--CEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCC--CeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch
Confidence            44443332 245678999999999999998  89999999998865543322211  110    1123457899999999


Q ss_pred             CCCe-EEEEEEEeCCCcEEeEEEEE
Q psy1095         238 EDEG-EFTCRVANELGEVVTSACLI  261 (325)
Q Consensus       238 ~d~G-~Y~C~~~~~~~~~~~~~~l~  261 (325)
                      +|.| .|+|.|.|..|.....+.|.
T Consensus        80 ~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          80 RFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            9999 59999999999988877765

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8e-13  Score=85.89  Aligned_cols=78  Identities=12%  Similarity=0.122  Sum_probs=60.5

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+.+|+.++|.|.+.+.+++ ..+.|+|+|..+.....              ...|.|.+++.+|+|.|.|.|.|..
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~-~~~~w~k~g~~~~~~~~--------------~~~l~i~~~~~~dsG~Y~C~a~n~~   72 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDV-YKVIYYKDGEALKYWYE--------------NHNISITNATVEDSGTYYCTGKVWQ   72 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCE-EEEEEEETTEECCSCCC--------------SSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CcCeEeCCCEEEEEEEecCCCCC-eEEEEEEeeeccccccc--------------cceEEEeeeeeecCcEEEEEEEeCC
Confidence            34568899999999999776543 78999999988754322              1379999999999999999999987


Q ss_pred             CcEE-eEEEEEEEe
Q psy1095         252 GEVV-TSACLIVDV  264 (325)
Q Consensus       252 ~~~~-~~~~l~v~~  264 (325)
                      +... ..+.|.|..
T Consensus        73 ~~~~S~~v~i~V~~   86 (89)
T d1f2qa2          73 LDYESEPLNITVIK   86 (89)
T ss_dssp             EEEECCCEEEEEEC
T ss_pred             CCeEeeeEEEEEEe
Confidence            7543 455666643

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.7e-14  Score=97.51  Aligned_cols=87  Identities=23%  Similarity=0.359  Sum_probs=65.4

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCCCCCcEEEEe-------cCCeEEEEEccCCCCCCeEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIRE-------KEDLRFLEISEVTLEDAGLY  136 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y  136 (325)
                      ||.+.....+..+.+|++++|.|.+ .|.|.+.+.|++++..+....+.....       ......|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            5655555556678899999999998 479999999999998875543222111       12234689999999999999


Q ss_pred             EEEEEeCCeeEEEEE
Q psy1095         137 TIKVENNYGSVEATA  151 (325)
Q Consensus       137 ~C~~~~~~~~~~~~~  151 (325)
                      +|.+.|..|....+.
T Consensus        82 ~C~a~N~~G~~~~s~   96 (104)
T d1nbqa2          82 SCEARNGYGTPMTSN   96 (104)
T ss_dssp             EEEEECSSSCCEECC
T ss_pred             EEEEEECCCceEEEE
Confidence            999999998765543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.6e-13  Score=87.13  Aligned_cols=91  Identities=19%  Similarity=0.258  Sum_probs=61.7

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEe--eCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF--RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG  241 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  241 (325)
                      .|.|. .+.+..+.+|+.+.|.|.+.|.|.  +.+.|.  +++.... ...........    ...+.|.|.++..+|+|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~--p~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~L~I~~v~~~D~G   73 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTV--AGDRLWLQGIDVRDA-PLKEIKVTSSR----RFIASFNVVNTTKRDAG   73 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCC--SSCEEEEEETTBCCC-CEEEEEEEETT----EEEEEEEECSCCGGGCS
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCC--CcEEEEEeeeeeeee-cCCceeEEEee----cCceEEEECCCCHHHCe
Confidence            36775 467889999999999999999887  443332  2222211 11111111111    13468999999999999


Q ss_pred             EEEEEEEeCCCcEEeE-EEEEE
Q psy1095         242 EFTCRVANELGEVVTS-ACLIV  262 (325)
Q Consensus       242 ~Y~C~~~~~~~~~~~~-~~l~v  262 (325)
                      .|+|.|.|..|...+. +.|.|
T Consensus        74 ~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          74 KYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCeEEEEEEEEEE
Confidence            9999999999986544 68876

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=5.7e-13  Score=90.75  Aligned_cols=88  Identities=22%  Similarity=0.355  Sum_probs=60.3

Q ss_pred             CeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCC--cceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         173 NLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK--ENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      ...+.+|+.+.|.|.+. +.|.  +.+.|++++..+...............  .....+.|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N   88 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPP--SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN   88 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSC--CEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEecCCeEEEEEEeecCCCC--CEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEE
Confidence            34688999999999985 6777  899999999887544322211000000  001234799999999999999999999


Q ss_pred             CCCcEEeE--EEEEE
Q psy1095         250 ELGEVVTS--ACLIV  262 (325)
Q Consensus       250 ~~~~~~~~--~~l~v  262 (325)
                      ..|....+  +.|.|
T Consensus        89 ~~G~~~~s~~v~l~V  103 (110)
T d1f97a2          89 GYGTAMRSEAAHMDA  103 (110)
T ss_dssp             SSSCCEECCCEEEEE
T ss_pred             CCCcEEEEEEEEEEE
Confidence            99977654  44444

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=6e-13  Score=88.12  Aligned_cols=89  Identities=25%  Similarity=0.381  Sum_probs=67.5

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+.  ..+..+.+|+.+.|.|.+.+ ++  +.+.|++++..+.........  ..+      ..|.|.+++.+|.|.|
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~--~~v~W~~~~~~l~~~~~~~~~--~~~------~~L~I~~v~~~d~G~Y   71 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IG--ANIQWLFNSQSLQLTERMTLS--QNN------SILRIDPIKREDAGEY   71 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SS--CEEEEEETTEECCCCTTEEEE--TTT------TEEEECSCCGGGCEEE
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CC--CCEEEEEeeeecccccceecc--CCc------eEEEEeccchhhceEE
Confidence            45443  34567889999999998855 44  789999999998766554322  222      4799999999999999


Q ss_pred             EEEEEeCCCcEEe-EEEEEEEee
Q psy1095         244 TCRVANELGEVVT-SACLIVDVV  265 (325)
Q Consensus       244 ~C~~~~~~~~~~~-~~~l~v~~~  265 (325)
                      +|.|.|..|...+ .+.|.|...
T Consensus        72 ~C~a~N~~g~~~S~~~~L~V~~~   94 (96)
T d1l6za2          72 QCEISNPVSVRRSNSIKLDIIFD   94 (96)
T ss_dssp             EEEEESSSCCEECCCCEEEECCS
T ss_pred             EEEEEeCCCCeEEEeEEEEEEcC
Confidence            9999999887753 577777443

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.4e-14  Score=90.56  Aligned_cols=71  Identities=20%  Similarity=0.225  Sum_probs=59.5

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ....+.+|+.+.|.|.+.|.|.  +.+.|++++..+....                   .+.+++.+|+|.|.|.|.|..
T Consensus        12 ~~~~~~~G~~~~l~C~a~G~P~--P~v~W~k~g~~~~~~~-------------------~~~~v~~~d~G~Y~C~A~N~~   70 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAWGNPL--PELKCLKDGTFPLPIG-------------------ESVTVTRDLEGTYLCRARSTQ   70 (84)
T ss_dssp             SEEEEETTCEECCCCCCEEESC--CEEEEEETTTEECCTT-------------------SCEECCGGGCEEEEEEEEETT
T ss_pred             ccEEEeCCCEEEEEEEEeEcCc--cEEEEEEeeccceeee-------------------eeeccccCCCCEEEEEEEcCC
Confidence            4567889999999999999999  8999999987665322                   234577899999999999999


Q ss_pred             CcEEeEEEEEEE
Q psy1095         252 GEVVTSACLIVD  263 (325)
Q Consensus       252 ~~~~~~~~l~v~  263 (325)
                      |.....+.|.|.
T Consensus        71 G~~~~~~~l~V~   82 (84)
T d2oz4a3          71 GEVTREVTVNVL   82 (84)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            999888888874

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.7e-13  Score=89.08  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=67.9

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      ++.+...+....+.+|+.++|.|.+.|. |.+.+.+.|++++..+......         .....+.|.|.....+|.|.
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~---------~~~~~s~l~i~~~~~dd~g~   74 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV---------GEPAEVTTTVLVRRDHHGAQ   74 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC---------TTTEEEEEEEECCSSCSSCE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc---------cccceEEEEEeeehhHCCCE
Confidence            4556666667778899999999999974 4433478999999888643221         11245789999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |+|.|.|..|.....+.+.+
T Consensus        75 ytC~A~n~~g~~~~~~~~~~   94 (103)
T d1iama1          75 FSCRTELDLRPQGLELFENT   94 (103)
T ss_dssp             EEEEEEEECGGGTSCEEEEE
T ss_pred             EEEEEEeCCCCccCeEeeeE
Confidence            99999999987766665554

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-13  Score=90.23  Aligned_cols=80  Identities=21%  Similarity=0.236  Sum_probs=61.8

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      ..|.+...+....+.+|+.+.|.|.+.+.+++ +++.|+|++..+....+.  .. ..+      ..|.|.+++.+|+|.
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~-~~i~W~k~~~~l~~~~~~--~~-~~~------~~L~I~~v~~~D~G~   74 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDN-ATVHWVLRKPAAGSHPSR--WA-GMG------RRLLLRSVQLHDSGN   74 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCC-SEEEEEEECSSSSCCCEE--EE-EES------SEEEECSCCGGGCEE
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCC-ceEEEEEccccccceeeE--Ee-cCC------CEEEECCCChhcCEE
Confidence            35777777777788899999999999887653 689999999887654322  21 222      379999999999999


Q ss_pred             EEEEEEeCCC
Q psy1095         243 FTCRVANELG  252 (325)
Q Consensus       243 Y~C~~~~~~~  252 (325)
                      |+|.|.|..+
T Consensus        75 Y~C~a~n~~~   84 (93)
T d1n26a1          75 YSCYRAGRPA   84 (93)
T ss_dssp             EEEESSSSCS
T ss_pred             EEEEECCccc
Confidence            9999976543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.2e-14  Score=93.98  Aligned_cols=87  Identities=23%  Similarity=0.315  Sum_probs=64.9

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC------------CcEEEEecCCeEEEEEccCCCCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN------------ARVTIREKEDLRFLEISEVTLED  132 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~d  132 (325)
                      ++.+...+....+.+|+++.|.|.+.|.|.|.+.|++++..+...            .+....    ..+|.|.+++.+|
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D   79 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL----PTGITFKSVTRED   79 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE----TTEEECSCCCTTS
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec----CceEEEecccccc
Confidence            345555666777999999999999999999999999976433211            111111    1369999999999


Q ss_pred             CeEEEEEEEeCCeeEEEEEEEEE
Q psy1095         133 AGLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus       133 ~G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      +|.|+|.+.|..|.....+.|.+
T Consensus        80 ~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          80 TGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             CSEEEEEEEETTSSCEECCEEEC
T ss_pred             eeeEEEEEEECCCCEEEEEEEEE
Confidence            99999999999987766555443

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.6e-13  Score=90.97  Aligned_cols=96  Identities=15%  Similarity=0.238  Sum_probs=65.8

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec--CCcceeEEEEEeCCCCCCCCeE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD--SKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      +.+........+.+|+++.|.|.+.+.|.  +.+.|++++..+.............  +......+.|.|.+++.+|+|.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~--p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSS--PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT   82 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSS--EEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCC--CeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceee
Confidence            34444445677899999999999999887  8999999765433211111110000  0001122479999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |+|.|.|..|.....+.|.+
T Consensus        83 Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          83 YTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEEEEETTSSCEECCEEEC
T ss_pred             EEEEEEECCCCEEEEEEEEE
Confidence            99999999998887766655

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.4e-12  Score=83.35  Aligned_cols=87  Identities=16%  Similarity=0.273  Sum_probs=63.8

Q ss_pred             CCeeeecCcC-eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         164 RPKVLNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       164 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      +|.|.....+ ..+.+|+.+.|.|.+. .|+  +.+.|++++..+..+....... ..+    ....|.|.++..+|+|.
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~--~~v~W~k~g~~i~~~~~~~~~~-~~~----~~~~L~I~~~~~~D~G~   76 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHD--AEVKWLKNGQEIQMSGSKYIFE-SIG----AKRTLTISQCSLADDAA   76 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSS--SCCEEEESSSEECCCSSSSEEE-EET----TEEEEEECSCSSSSCEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCC--ceEEEEEcCccceeeeeeEeee-ccC----CeEEeecCCCCceecEE
Confidence            3555555544 4689999999999984 466  7899999999987654333222 233    35789999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      |+|.|.|    ...++.|.|
T Consensus        77 Y~c~a~n----~~~s~~l~V   92 (94)
T d1pd6a_          77 YQCVVGG----EKCSTELFV   92 (94)
T ss_dssp             EEEEETT----EEECCEEEE
T ss_pred             EEEEEee----EEEEEEEEE
Confidence            9999854    455566665

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.37  E-value=1.2e-12  Score=84.08  Aligned_cols=74  Identities=24%  Similarity=0.408  Sum_probs=59.7

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+....+.+|+.++|.|.+.+.+.+ ..+.|++++..+....                ..|.|.+++.+|+|.
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~l~i~~~~~~d~G~   66 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPED-NSTQWFHNESLISSQA----------------SSYFIDAATVNDSGE   66 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTB-CCCEEEETTEEEESSC----------------SEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCC-eEEEEeeeceeeeecc----------------eeeEecCCcccCCEE
Confidence            45777777878889999999999999988873 4577888887765322                379999999999999


Q ss_pred             EEEEEEeCCCc
Q psy1095         243 FTCRVANELGE  253 (325)
Q Consensus       243 Y~C~~~~~~~~  253 (325)
                      |+|.+.+...+
T Consensus        67 Y~C~a~~s~~S   77 (84)
T d1fnla1          67 YRCQTNLSTLS   77 (84)
T ss_dssp             EEEECSSSCCC
T ss_pred             EEEEccCCCcc
Confidence            99999775543

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-13  Score=90.43  Aligned_cols=86  Identities=14%  Similarity=0.182  Sum_probs=67.1

Q ss_pred             cCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCC--CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          71 VPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATP--NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      .|......+|+.+.|.|.+. +.|.+.|.|+|++..+..  .....+...+  .+|.|.+++.+|+|.|+|.+.|..|..
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~   85 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCL   85 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC--CEEEeccceecCCEEEEEEEECCCCeE
Confidence            34455677899999999885 678999999998865532  2222222222  369999999999999999999999999


Q ss_pred             EEEEEEEEECC
Q psy1095         148 EATARLEIMDP  158 (325)
Q Consensus       148 ~~~~~l~v~~~  158 (325)
                      ...+.|.|...
T Consensus        86 ~~~~~L~V~~~   96 (101)
T d1iray1          86 RIKISAKFVEN   96 (101)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEEeC
Confidence            99999999864

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.36  E-value=4e-13  Score=90.43  Aligned_cols=78  Identities=19%  Similarity=0.344  Sum_probs=61.0

Q ss_pred             cCeeEecCCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095         172 ENLRCCDGDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      ....+.+|+.+.|.|.+ .+.|.  +.+.|++++..+..............      +.|.|.+++.+|+|.|+|.|.|.
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~--~~v~W~k~g~~~~~~~~~~~~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~   83 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPA--LSYRWLLNEFPNFIPADGRRFVSQTT------GNLYIAKTEASDLGNYSCFATSH   83 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESC--CEEEEEESSTTCBCCCCSSEEECTTT------CCEEESSCCGGGCEEEEEEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCC--CEEEEEEeeccccccccceeeeecCC------CEEeecccccccCcEEEEEEEEC
Confidence            45679999999999987 57777  89999999877655444333322222      47999999999999999999999


Q ss_pred             CCcEEeE
Q psy1095         251 LGEVVTS  257 (325)
Q Consensus       251 ~~~~~~~  257 (325)
                      .+.....
T Consensus        84 ~g~~~~~   90 (105)
T d1cs6a2          84 IDFITKS   90 (105)
T ss_dssp             ETTEEEE
T ss_pred             CCCEEEE
Confidence            8877654

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-12  Score=88.06  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=64.0

Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA  258 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  258 (325)
                      ....|.|.+.|.|+  +.+.|++++..+..+........... ......+.|.|.++..+|+|.|+|.|.|..|.....+
T Consensus        16 ~~~ci~~~v~G~P~--P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i   93 (107)
T d1he7a_          16 HHWCIPFSVDGQPA--PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (107)
T ss_dssp             CEEEEEEEECCSSC--CEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEEEecC--CeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEE
Confidence            33445568899998  89999999999876655443322222 2334567899999999999999999999999998888


Q ss_pred             EEEEEee
Q psy1095         259 CLIVDVV  265 (325)
Q Consensus       259 ~l~v~~~  265 (325)
                      .|.+...
T Consensus        94 ~v~v~~~  100 (107)
T d1he7a_          94 MAAFMDN  100 (107)
T ss_dssp             EECCCSC
T ss_pred             EEEEEcC
Confidence            8877433

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1e-12  Score=88.16  Aligned_cols=97  Identities=13%  Similarity=0.268  Sum_probs=65.7

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEe--cCCcceeEEEEEeCCCCCCCCeE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV--DSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      |.+........+.+|+++.|.|.+.+.|.  +.+.|++++...............  ........++|.|.+++.+|+|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~--p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSS--PRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE   79 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSS--EEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCC--CeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEE
Confidence            44555556678899999999999999887  899999854332110000000000  00111122479999999999999


Q ss_pred             EEEEEEeCCCcEEeEEEEEEE
Q psy1095         243 FTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       243 Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      |.|.|.|..|.....+.+.|.
T Consensus        80 Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          80 YTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999988777666654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.6e-14  Score=94.53  Aligned_cols=89  Identities=20%  Similarity=0.387  Sum_probs=64.3

Q ss_pred             cCeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         172 ENLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      ....+..|+.+.|.|.+. |.|.  +.+.|++++..+.............. ......+.|.|.+++.+|+|.|+|.|.|
T Consensus        10 ~~~~v~~G~~v~l~C~~~~g~p~--p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N   87 (104)
T d1nbqa2          10 IPSSATIGNRAVLTCSEQDGSPP--SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN   87 (104)
T ss_dssp             CBSEEETTSCEEECCCCCSCBSC--CEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEEC
T ss_pred             CCCEEecCCcEEEEEEeecCCCC--CEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEE
Confidence            345688999999999884 6777  89999999988765543322110100 0111235799999999999999999999


Q ss_pred             CCCcEEeEEEEEE
Q psy1095         250 ELGEVVTSACLIV  262 (325)
Q Consensus       250 ~~~~~~~~~~l~v  262 (325)
                      ..|....++.+.+
T Consensus        88 ~~G~~~~s~~v~v  100 (104)
T d1nbqa2          88 GYGTPMTSNAVRM  100 (104)
T ss_dssp             SSSCCEECCCBCC
T ss_pred             CCCceEEEEEEEE
Confidence            9998876655544

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=4.2e-12  Score=85.02  Aligned_cols=86  Identities=21%  Similarity=0.345  Sum_probs=64.8

Q ss_pred             CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC------------CCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP------------NARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      |.+...+....+.+|+++.|.|.+.+.|.|.+.|++++.....            ..+....    ..+|.|.+++.+|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~tL~I~~v~~~D~   77 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS----SSGITFSSVTRKDN   77 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE----TTEEEESCCCGGGC
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEec----CCEEEEeECCccCC
Confidence            6677777788899999999999999999999999985432210            1111111    13699999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEE
Q psy1095         134 GLYTIKVENNYGSVEATARLEI  155 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~~~l~v  155 (325)
                      |.|+|.+.|..|.....+.+.|
T Consensus        78 G~Y~C~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          78 GEYTCMVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEEEE
Confidence            9999999999887665555444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.34  E-value=1.3e-12  Score=83.88  Aligned_cols=71  Identities=17%  Similarity=0.225  Sum_probs=58.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.+...|....+.+|++++|.|.+.+.|.+. +.|++++..+...          ...|.|.+++.+|+|.|+|.+.+
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~~   73 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNL   73 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCCcccCCEEEEEEccC
Confidence            457888889888999999999999999888775 5677888765432          23599999999999999999876


Q ss_pred             CC
Q psy1095         143 NY  144 (325)
Q Consensus       143 ~~  144 (325)
                      ..
T Consensus        74 s~   75 (84)
T d1fnla1          74 ST   75 (84)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.34  E-value=1.1e-12  Score=84.45  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=61.5

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .|.+.+.|....+.+|++|+|.|.+.+.|.+ .+.|++++..+....          ..|.|.+++.+|+|.|+|.+.|.
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEECTTS
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------cceEEeeccccCCcEEEEECCCC
Confidence            3567788888889999999999999887765 578999998876432          24889999999999999998765


Q ss_pred             CeeEEEEEEEEE
Q psy1095         144 YGSVEATARLEI  155 (325)
Q Consensus       144 ~~~~~~~~~l~v  155 (325)
                      .+.  ..+.|.|
T Consensus        74 ~~S--~~v~l~V   83 (85)
T d2fcba1          74 SLS--DPVHLTV   83 (85)
T ss_dssp             BCC--CCEEEEE
T ss_pred             ccc--ccEEEEE
Confidence            432  2344444

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-13  Score=94.65  Aligned_cols=97  Identities=20%  Similarity=0.362  Sum_probs=71.6

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCC-CeEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED-EGEF  243 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y  243 (325)
                      |.+. .+....+.+|+.+.|.|.+.+.+++ +.+.|++++..+....................+.|.|.++..+| +|.|
T Consensus         8 p~i~-~~~~~~~~~G~~~~l~C~v~~~~p~-~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y   85 (115)
T d2crya1           8 PIIS-STQTQHALHGEKGQIKCFIRSTPPP-DRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   85 (115)
T ss_dssp             CCEE-EECCCCCCTTSCCCCCEEECCSSCC-SEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CEEe-cCCCEEEecCCEEEEEEEeecCCCe-eEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEE
Confidence            4443 3445677899999999999986653 68999999988865543333222222222244689999999999 7999


Q ss_pred             EEEEEeCCCcEEeEEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v~  263 (325)
                      +|.|.|..|.....+.|.|.
T Consensus        86 ~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          86 NCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             EEEEECSSCEEEEEECCCCS
T ss_pred             EEEEEECCCeEEEEEEEEEE
Confidence            99999999999888888773

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=87.09  Aligned_cols=86  Identities=13%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             CeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .....+|+.+.|.|.+.. .+.  +.+.|++++..+.............+      ..|.|.+++.+|+|.|+|.|.|..
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~--~~i~W~k~~~~~~~~~~~~~~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~~   82 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHK--GTITWYKDDSKTPVSTEQASRIHQHK------EKLWFVPAKVEDSGHYYCVVRNSS   82 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCS--SEEEEECSSTTSBCCCCTTSSEEEET------TEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEeCCCeEEEEeeCCCCCCC--ceEEEEECCcccccccccceEEeccC------CEEEeccceecCCEEEEEEEECCC
Confidence            345678999999998864 455  89999998876554333222222222      489999999999999999999999


Q ss_pred             CcEEeEEEEEEEeeC
Q psy1095         252 GEVVTSACLIVDVVK  266 (325)
Q Consensus       252 ~~~~~~~~l~v~~~~  266 (325)
                      |.....+.|.|....
T Consensus        83 g~~~~~~~L~V~~~~   97 (101)
T d1iray1          83 YCLRIKISAKFVENE   97 (101)
T ss_dssp             EEEEEEEEEEEECCC
T ss_pred             CeEEEEEEEEEEeCC
Confidence            999999999986543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.33  E-value=1.1e-12  Score=84.48  Aligned_cols=80  Identities=24%  Similarity=0.355  Sum_probs=62.6

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....+.+|+.++|.|.+.+.+.. ..+.|++++..+....                ..|.|.+++.+|+|.|
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~-~~~~w~~~g~~~~~~~----------------~~l~i~~v~~~dsG~Y   66 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPES-DSIQWFHNGNLIPTHT----------------QPSYRFKANNNDSGEY   66 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCT-TCCEEEETTEECTTCC----------------SSEEEEECCGGGCEEE
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccce-eEEEeecccccccccc----------------cceEEeeccccCCcEE
Confidence            4667777777889999999999999887763 5789999998875432                2588999999999999


Q ss_pred             EEEEEeCCCcEEeEEEEEE
Q psy1095         244 TCRVANELGEVVTSACLIV  262 (325)
Q Consensus       244 ~C~~~~~~~~~~~~~~l~v  262 (325)
                      +|.+.|..++.  .+.|.|
T Consensus        67 ~C~a~ns~~S~--~v~l~V   83 (85)
T d2fcba1          67 TCQTGQTSLSD--PVHLTV   83 (85)
T ss_dssp             EEECTTSBCCC--CEEEEE
T ss_pred             EEECCCCcccc--cEEEEE
Confidence            99998765433  345554

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=87.21  Aligned_cols=90  Identities=10%  Similarity=0.083  Sum_probs=68.4

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cCCC--eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP--WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      .|+.+.+.|.+..+.+|+.++|.|.+.| .|.+  .++|++++..+....   .........|.|.....+|.|.|+|++
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~---~~~~~~~s~l~i~~~~~dd~g~ytC~A   79 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGAQFSCRT   79 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE---CCTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccc---cccccceEEEEEeeehhHCCCEEEEEE
Confidence            5788888888888999999999999986 5655  578999998874321   111223457999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEE
Q psy1095         141 ENNYGSVEATARLEIM  156 (325)
Q Consensus       141 ~~~~~~~~~~~~l~v~  156 (325)
                      .|..+.......+.+.
T Consensus        80 ~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          80 ELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEECGGGTSCEEEEEC
T ss_pred             EeCCCCccCeEeeeEc
Confidence            9987765445555543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.6e-13  Score=84.33  Aligned_cols=79  Identities=22%  Similarity=0.301  Sum_probs=59.2

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .|.|.+.|....+.+|++++|.|.+.+.|.+. +.|++++..+....          ..|.|.+++.+|+|.|.|.+.+.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~v~~~d~G~Y~C~a~~s   70 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQV   70 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTTS
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------ceeEECCCChhhCCcEEEEecCC
Confidence            47888889888899999999999998888764 56788888775432          35999999999999999998765


Q ss_pred             CeeEEEEEEEEE
Q psy1095         144 YGSVEATARLEI  155 (325)
Q Consensus       144 ~~~~~~~~~l~v  155 (325)
                      ...  ..+.|.|
T Consensus        71 ~~S--~~v~l~V   80 (82)
T d1f2qa1          71 NES--EPVYLEV   80 (82)
T ss_dssp             SCC--CCEEEEE
T ss_pred             CCc--ccEEEEE
Confidence            432  2344444

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1e-12  Score=84.03  Aligned_cols=79  Identities=27%  Similarity=0.370  Sum_probs=59.0

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.+...+....+.+|+.++|.|.+.+.+.+ ..+.|++++..+....                ..|.|.+++.+|+|.|.
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~l~i~~v~~~d~G~Y~   64 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEV-SSTKWFHNGSLSEETN----------------SSLNIVNAKFEDSGEYK   64 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC-----CCEEEETTEECSCCS----------------SEEEECSCCGGGCEEEE
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeee-cceeeeeeeeeeeccc----------------ceeEECCCChhhCCcEE
Confidence            566677777889999999999999988873 3577888888775322                26999999999999999


Q ss_pred             EEEEeCCCcEEeEEEEEE
Q psy1095         245 CRVANELGEVVTSACLIV  262 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~v  262 (325)
                      |.|.|..+.  ..+.|.|
T Consensus        65 C~a~~s~~S--~~v~l~V   80 (82)
T d1f2qa1          65 CQHQQVNES--EPVYLEV   80 (82)
T ss_dssp             EECTTSSCC--CCEEEEE
T ss_pred             EEecCCCCc--ccEEEEE
Confidence            999775443  3455555

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.2e-12  Score=85.55  Aligned_cols=71  Identities=15%  Similarity=0.262  Sum_probs=56.0

Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC-cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA  149 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  149 (325)
                      ..+.+|+++.|.|.+.+ |.|.+.|++++..+.... ++.+...   ..|.|.+++.+|+|.|+|.+.|..+....
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~---~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~   78 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGR---KNLLIFNLSEGDSGVYQCLSEERVKNKTV   78 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTT---TCEEECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeeccee---eEEEECCCCHHHCcEEEEEEEEcCCCEEE
Confidence            46889999999999987 668999999998876543 3333222   24999999999999999999987765443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.5e-12  Score=85.11  Aligned_cols=79  Identities=14%  Similarity=0.180  Sum_probs=60.0

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ...+.+|+++.|.|.+.+ ++  +.+.|++++..+......... ..+       ..|.|.+++.+|+|.|+|.|.|..+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~--~~v~W~~~g~~l~~~~~~~~~-~~~-------~~L~I~~v~~~DsG~Y~C~A~n~~g   74 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NL--ARVFWKFQNGVLKAESPKYGL-MGR-------KNLLIFNLSEGDSGVYQCLSEERVK   74 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TT--CEEEEEESSSBCCCCSSSBCC-TTT-------TCEEECSCCGGGCEEEEEEEEEECS
T ss_pred             heeEeCCCEEEEEEEeec-cC--CceeeecCcccceeeeeeeec-cee-------eEEEECCCCHHHCcEEEEEEEEcCC
Confidence            456889999999999987 55  789999999887654332211 122       2699999999999999999999888


Q ss_pred             cEEeEEEEEE
Q psy1095         253 EVVTSACLIV  262 (325)
Q Consensus       253 ~~~~~~~l~v  262 (325)
                      .......|.+
T Consensus        75 ~~~~~~~l~~   84 (92)
T d1olza1          75 NKTVFQVVAK   84 (92)
T ss_dssp             SSEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            7665544443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-13  Score=94.60  Aligned_cols=98  Identities=18%  Similarity=0.301  Sum_probs=74.5

Q ss_pred             cccCCCCeeEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCCeeCCCCC--cEEEEe--c--CCeEEEEEccCCCCC
Q psy1095          60 RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKPATPNA--RVTIRE--K--EDLRFLEISEVTLED  132 (325)
Q Consensus        60 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~--~~~~~~--~--~~~~~l~i~~~~~~d  132 (325)
                      +.+..||.+. .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+....  ++.+..  .  +....|.|.++...|
T Consensus         2 L~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            3556788775 4556778899999999999885 566899999998876532  333221  1  123569999999998


Q ss_pred             -CeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095         133 -AGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       133 -~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                       +|.|+|.+.|..|.....+.|.|...
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             CCeEEEEEEEECCCeEEEEEEEEEECC
Confidence             69999999999999888888877643

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.3e-12  Score=85.03  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             eEecCCCeEEEEE------EEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-
Q psy1095          75 KICDLGDTVRFQC------SVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-  147 (325)
Q Consensus        75 ~~v~~g~~v~l~C------~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-  147 (325)
                      ..+..|....|.|      .+.+.|.|.+.|++++.++...........+   .|.|.+++.+|+|.|+|.+.|..+.. 
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCCEE
Confidence            4578899999999      4567889999999999999766544433332   59999999999999999998765422 


Q ss_pred             ---EEEEEEEEEC
Q psy1095         148 ---EATARLEIMD  157 (325)
Q Consensus       148 ---~~~~~l~v~~  157 (325)
                         ...+.+.+..
T Consensus        86 ~~vt~~i~~~v~~   98 (103)
T d1iray2          86 YPITRVIEFITLE   98 (103)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEECC
Confidence               3444455544

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.1e-12  Score=82.82  Aligned_cols=72  Identities=15%  Similarity=0.253  Sum_probs=56.7

Q ss_pred             eeEecCCcEEEEE------EEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         174 LRCCDGDSVTFEC------QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       174 ~~v~~g~~v~l~C------~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      +.+..|....|.|      .+.++|+  +.+.|++++..+..+.....  ..++       .|.|.++..+|+|.|+|.|
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~--P~i~W~kdg~~l~~~~~~~~--~~~~-------~L~I~~v~~~D~G~Y~C~a   77 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNEL--PKLQWYKDCKPLLLDNIHFS--GVKD-------RLIVMNVAEKHRGNYTCHA   77 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBC--CCCEEEETTEECCCCSSSEE--EETT-------EEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCC--CEEEEEECCccccCCCcEEE--ecCC-------EEEEcccccccCcEEEEEE
Confidence            5678899999999      4566777  89999999999876543222  2333       7999999999999999999


Q ss_pred             EeCCCcEEe
Q psy1095         248 ANELGEVVT  256 (325)
Q Consensus       248 ~~~~~~~~~  256 (325)
                      .|..+....
T Consensus        78 ~n~~~g~~~   86 (103)
T d1iray2          78 SYTYLGKQY   86 (103)
T ss_dssp             EEEETTEEE
T ss_pred             EECcCCEEE
Confidence            998775443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.27  E-value=8.1e-13  Score=85.92  Aligned_cols=82  Identities=20%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV  247 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  247 (325)
                      ...+.+..+.+|+++.|.|.+ +.|.  +.+.|+++|..+..+..+...  ..+    ....|.|.+++.+|+|.|+|.|
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~--~~v~W~k~g~~i~~~~~~~~~--~~~----~~~~L~I~~~~~~D~G~Y~c~a   75 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPD--VHGQWKLKGQPLTASPDCEII--EDG----KKHILILHNCQLGMTGEVSFQA   75 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSS--CCCBCCSSSCCCCSSSSCEEE--ECS----SCEEEECCSCCSCCCSEECCBC
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCC--cEEEEEEeeeecccceeEEEE--eec----eeEEEEEcCCChhcCEEEEEEE
Confidence            344567889999999999997 4565  789999999999877766554  444    3468999999999999999998


Q ss_pred             EeCCCcEEeEEEEEE
Q psy1095         248 ANELGEVVTSACLIV  262 (325)
Q Consensus       248 ~~~~~~~~~~~~l~v  262 (325)
                      .|.    ..++.|.|
T Consensus        76 ~n~----~~sa~l~V   86 (89)
T d1tiua_          76 ANA----KSAANLKV   86 (89)
T ss_dssp             SSC----BCCEEEEE
T ss_pred             Cce----EEEEEEEE
Confidence            664    34556665

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.8e-12  Score=85.05  Aligned_cols=87  Identities=18%  Similarity=0.226  Sum_probs=60.3

Q ss_pred             cCcCeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095         170 GLENLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  248 (325)
                      ......+.+|+.++|.|.+.| .|.+.+.+.|++++..+........    ........+.|.|.....+|.|.|+|.|.
T Consensus         8 ~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~----~~~~~~~~s~l~~~~~~~d~g~~ytC~A~   83 (106)
T d1zxqa1           8 TLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA----APAPQEATATFNSTADREDGHRNFSCLAV   83 (106)
T ss_dssp             EEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS----TTCTTCEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             cCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE----eecccceeEEEEEeeehhcCCcEEEEEEE
Confidence            334557889999999999986 3432268999999998864332221    11122245678888888889999999999


Q ss_pred             eCCCcEEeEEEE
Q psy1095         249 NELGEVVTSACL  260 (325)
Q Consensus       249 ~~~~~~~~~~~l  260 (325)
                      |..+.....+.+
T Consensus        84 n~~~~~~~~~~~   95 (106)
T d1zxqa1          84 LDLMSRGGNIFH   95 (106)
T ss_dssp             EECGGGTCCEEE
T ss_pred             ecCCCCCCeeEe
Confidence            988755444333

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.5e-12  Score=86.46  Aligned_cols=81  Identities=7%  Similarity=0.036  Sum_probs=56.4

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEe-cC--CCeeEEeeCCeeCCCCCcEEEEec--CCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTG-QP--APWTSWSKDGKPATPNARVTIREK--EDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~-~p--~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+.+.+.+..+.+|+.++|.|.+.| .|  .+.++|++++..+...........  .....|.+.....+|.|.|+|+|.
T Consensus         4 ~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~   83 (106)
T d1zxqa1           4 QVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAV   83 (106)
T ss_dssp             CCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             CCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEE
Confidence            3445666677999999999999986 44  457899999988753221111111  123457777777888889999999


Q ss_pred             eCCeeE
Q psy1095         142 NNYGSV  147 (325)
Q Consensus       142 ~~~~~~  147 (325)
                      |..+..
T Consensus        84 n~~~~~   89 (106)
T d1zxqa1          84 LDLMSR   89 (106)
T ss_dssp             EECGGG
T ss_pred             ecCCCC
Confidence            876643

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=5.2e-10  Score=77.71  Aligned_cols=92  Identities=21%  Similarity=0.271  Sum_probs=64.6

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec---CCCeeEEeeCCeeC---------------C--CCCcEEEEe---cCCeEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ---PAPWTSWSKDGKPA---------------T--PNARVTIRE---KEDLRFLE  124 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~---p~~~v~W~~~~~~~---------------~--~~~~~~~~~---~~~~~~l~  124 (325)
                      +..+..++.+.+|++|+|.|.+...   ....+.|++.+...               .  ...+..+..   ..+..+|.
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~   84 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALR   84 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEE
Confidence            3344445788899999999998642   23468999864311               0  012333322   12357899


Q ss_pred             EccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCC
Q psy1095         125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR  159 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~  159 (325)
                      |.+++.+|+|.|.|.+.+..+...+.+.|.|.++.
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          85 IQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             EEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            99999999999999999988888888899998753

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.13  E-value=3e-11  Score=81.65  Aligned_cols=79  Identities=25%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             ceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCCCC-------CcEEEEecCCeEEEEEccCCCCCCe---EEEEEEEe
Q psy1095          74 NKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPN-------ARVTIREKEDLRFLEISEVTLEDAG---LYTIKVEN  142 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~-------~~~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~~~~  142 (325)
                      ..++.+|+++.|.|.+ .|.|.|.+.|+|++..+...       .++....   ..+|.|.+++..|+|   .|.|.+.|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccc---ccccEEeeeEeeccCCceEEEEEEEe
Confidence            3457899999999986 89999999999987665322       1222222   235999999888776   79999999


Q ss_pred             CCeeEEEEEEEEE
Q psy1095         143 NYGSVEATARLEI  155 (325)
Q Consensus       143 ~~~~~~~~~~l~v  155 (325)
                      ..|.....+.+.+
T Consensus        88 ~~g~~~~~~~~~~  100 (111)
T d1biha2          88 AAVDEEVVLVEYE  100 (111)
T ss_dssp             TTCSSCEEEEEEE
T ss_pred             CCCCceEEEEEEE
Confidence            9887665554443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.8e-11  Score=77.79  Aligned_cols=79  Identities=15%  Similarity=0.110  Sum_probs=55.4

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC----------CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN----------ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+....|++|+|.|... .|.+.+.|++++..+...          .+..........+|+|.+++.+|+|.|.|.+.+.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            45678999999999864 588899999988665210          0111111233457999999999999999999776


Q ss_pred             CeeEEEEEEEEE
Q psy1095         144 YGSVEATARLEI  155 (325)
Q Consensus       144 ~~~~~~~~~l~v  155 (325)
                      .+..  .+.|.|
T Consensus        83 ~~t~--~~~l~V   92 (93)
T d1ccza1          83 TDTM--KFFLYV   92 (93)
T ss_dssp             CSCE--EEEEEE
T ss_pred             CcEE--EEEEEE
Confidence            5544  344444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.99  E-value=2.3e-11  Score=82.22  Aligned_cols=79  Identities=16%  Similarity=0.259  Sum_probs=56.6

Q ss_pred             eeEecCCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCCCC-----ceEEEecCCcceeEEEEEeCCCCCCCCe---EEE
Q psy1095         174 LRCCDGDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDM-----KPEVQVDSKENLVIARLKIPHVYPEDEG---EFT  244 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~Y~  244 (325)
                      ..+.+|+.+.|.|.+ .|.|.  +.+.|++++..+......     ......+       ..|.|.+++.+|+|   .|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-------~~L~i~~v~~~D~gd~g~Y~   82 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPK--PLITWKKRLSGADPNADVTDFDRRITAGPD-------GNLYFTIVTKEDVSDIYKYV   82 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESC--CEEEEEEEETTSCGGGCCCCCCTTEEECTT-------SCEEEEEECGGGCCSSEEEE
T ss_pred             ccccCCCeEEEEEEcccCCCC--CEEEEEeCCccccccccceeeeeeeccccc-------cccEEeeeEeeccCCceEEE
Confidence            346789999999986 89998  899999987655322211     1111122       37999999988776   799


Q ss_pred             EEEEeCCCcEEeEEEEE
Q psy1095         245 CRVANELGEVVTSACLI  261 (325)
Q Consensus       245 C~~~~~~~~~~~~~~l~  261 (325)
                      |.|.|..|.......+.
T Consensus        83 C~A~N~~g~~~~~~~~~   99 (111)
T d1biha2          83 CTAKNAAVDEEVVLVEY   99 (111)
T ss_dssp             EEEECTTCSSCEEEEEE
T ss_pred             EEEEeCCCCceEEEEEE
Confidence            99999998776554433

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=1.1e-08  Score=70.77  Aligned_cols=92  Identities=17%  Similarity=0.287  Sum_probs=59.6

Q ss_pred             cCeeEecCCcEEEEEEEEecCC-CCCeeEEeeCCEEec-------------cCCCCceEE-EecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPP-NDHDISWFRNNRLIK-------------LDSDMKPEV-QVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~-~~~~~~W~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~~l~i~~~~  236 (325)
                      ..+.+..|++++|.|.+..... ....+.|++.+....             ......... ............|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            3467889999999999864332 225789998543210             001111110 0111122246899999999


Q ss_pred             CCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         237 PEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      .+|+|.|+|.+.+..+.....+.|.|.
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            999999999999988877777777773

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.91  E-value=7e-09  Score=68.96  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=56.5

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--e-eC-----------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--K-PA-----------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~-~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.........+.||+..  . +.           ....++.....+...+|.|.+++.+|+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            566788888999999999999866555578999832  1 10           112356665566778899999999999


Q ss_pred             eEEEEEEEe
Q psy1095         134 GLYTIKVEN  142 (325)
Q Consensus       134 G~Y~C~~~~  142 (325)
                      |.|.|.+..
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999997643

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1.9e-09  Score=70.78  Aligned_cols=80  Identities=18%  Similarity=0.266  Sum_probs=56.3

Q ss_pred             ceEecCCCeEEEEEEE-Ee-cCCCeeEEeeCCeeCCC----------CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          74 NKICDLGDTVRFQCSV-TG-QPAPWTSWSKDGKPATP----------NARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~-~~-~p~~~v~W~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+....|++|+|.|.. .. .....|.|++++..+..          ..+..+..   ..+|.|.+++.+|+|.|+|.+.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~---ngSL~I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA---NGDLKIKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT---TSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECC---CccEEEeCCCHHHCEEEEEEEE
Confidence            3457789999999963 22 22347999998876521          12222222   2469999999999999999999


Q ss_pred             eCCeeE--EEEEEEEEE
Q psy1095         142 NNYGSV--EATARLEIM  156 (325)
Q Consensus       142 ~~~~~~--~~~~~l~v~  156 (325)
                      +..|..  .+.+.|.|+
T Consensus        81 ~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          81 STNGTRILNKALDLRIL   97 (98)
T ss_dssp             ETTCCEEEEEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEEE
Confidence            887754  566777775

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=8.7e-10  Score=73.70  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=52.9

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCC-------------------CCcEEEEecCCeEEEEEccCCCCCCe
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-------------------NARVTIREKEDLRFLEISEVTLEDAG  134 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~G  134 (325)
                      +..+.+|++|.|.|.........+.|+|.......                   ..|..+..   ..+|.|.+++.+|+|
T Consensus         8 P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~---ngSL~I~~v~~~D~G   84 (107)
T d1l6za1           8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS---NGSLLFQMITMKDMG   84 (107)
T ss_dssp             SSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECT---TSCEEECSCCGGGCE
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcc---cccEEEcCCCchhCE
Confidence            34477999999999843333567899985432110                   12444332   246999999999999


Q ss_pred             EEEEEEEeCCe-eEEEEEEEEE
Q psy1095         135 LYTIKVENNYG-SVEATARLEI  155 (325)
Q Consensus       135 ~Y~C~~~~~~~-~~~~~~~l~v  155 (325)
                      .|+|.+.+..+ .....+.|.|
T Consensus        85 ~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          85 VYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEEECCCCEEEEEEEEEE
Confidence            99999987654 3344555544

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.86  E-value=1.1e-08  Score=68.00  Aligned_cols=74  Identities=18%  Similarity=0.265  Sum_probs=55.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.........+.||+.  ++..            ....++.....+...+|.|.+++.+|+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            45678888899999999999876555557899973  2211            123466655556678899999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|...
T Consensus        84 a~YyCa~~   91 (106)
T d1i8ka_          84 GDYYCLQS   91 (106)
T ss_dssp             EEEEEEEC
T ss_pred             EEEeEecC
Confidence            99999754

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=9.6e-09  Score=70.80  Aligned_cols=84  Identities=19%  Similarity=0.283  Sum_probs=58.2

Q ss_pred             CceEecCCCeEEEEEEEEecCC----CeeEEeeCCeeCCC---------------------CCcEEEEec---CCeEEEE
Q psy1095          73 HNKICDLGDTVRFQCSVTGQPA----PWTSWSKDGKPATP---------------------NARVTIREK---EDLRFLE  124 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p~----~~v~W~~~~~~~~~---------------------~~~~~~~~~---~~~~~l~  124 (325)
                      ..+.+.+|++++|.|.+...+.    ..+.|++.......                     ..+..+...   .+..+|.
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            3467889999999999875432    35789863211100                     123333221   2345799


Q ss_pred             EccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095         125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIM  156 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  156 (325)
                      |.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999999888877777887775

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.2e-09  Score=71.27  Aligned_cols=85  Identities=19%  Similarity=0.213  Sum_probs=54.3

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCc----ceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE----NLVIARLKIPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~  248 (325)
                      .+....|++|+|.|... .|.  +.+.|++++..+................    ....+.|.|.+++.+|+|.|.|.+.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~--~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~   80 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPL--KEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP   80 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCC--SCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEECCCEEEEecCC-CCC--cEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEE
Confidence            35677899999999764 344  7899999887663211111110000000    0023579999999999999999998


Q ss_pred             eCCCcEEeEEEEEE
Q psy1095         249 NELGEVVTSACLIV  262 (325)
Q Consensus       249 ~~~~~~~~~~~l~v  262 (325)
                      |..+...  +.|.|
T Consensus        81 n~~~t~~--~~l~V   92 (93)
T d1ccza1          81 NITDTMK--FFLYV   92 (93)
T ss_dssp             TCCSCEE--EEEEE
T ss_pred             CCCcEEE--EEEEE
Confidence            8766544  44444

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.82  E-value=1.8e-08  Score=67.15  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=56.5

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.........+.||+..  +..            ....++..........|.|.+++.+|+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence            456788888999999999998765555678999742  111            113466666667778999999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|...
T Consensus        84 a~YyCa~~   91 (107)
T d1j1pl_          84 GMYFCQQA   91 (107)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcC
Confidence            99999754

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=4.6e-09  Score=68.91  Aligned_cols=90  Identities=16%  Similarity=0.174  Sum_probs=55.3

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCC-cceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK-ENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +....|++|+|.|...........+.|++++..+..-..........+. .......|.|.+++.+|+|.|+|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            3456799999999532222211479999988766321100000001110 001124799999999999999999999988


Q ss_pred             cE--EeEEEEEEE
Q psy1095         253 EV--VTSACLIVD  263 (325)
Q Consensus       253 ~~--~~~~~l~v~  263 (325)
                      ..  ...+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            76  445566653

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.79  E-value=2.3e-08  Score=66.26  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=55.5

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.........+.|||.  ++..            ....++..........|.|.+++.+|+
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            45678888899999999999987666667899973  2211            112345544455667899999999999


Q ss_pred             eEEEEEEEe
Q psy1095         134 GLYTIKVEN  142 (325)
Q Consensus       134 G~Y~C~~~~  142 (325)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1c5cl1          84 ADYYCLQYA   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEecCc
Confidence            999997643

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.79  E-value=1.8e-08  Score=67.02  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=55.7

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|...+.....+.||+..  ...            ....++.....+....|.|.+++.+|+
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence            445677888999999999999876555578999832  110            123466666566678899999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d1ospl1          84 ATYFCQQY   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             CcEEEeec
Confidence            99999764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.78  E-value=2.8e-08  Score=66.18  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=56.0

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.........+.||+..  +..            ....++..........|.|.+++.+|+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD   83 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence            456677888999999999999876555679999732  110            123456666566778899999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|...
T Consensus        84 a~YyCa~~   91 (107)
T d1kcvl1          84 ADYYCGQS   91 (107)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEec
Confidence            99999764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.78  E-value=3e-08  Score=65.83  Aligned_cols=75  Identities=19%  Similarity=0.310  Sum_probs=56.7

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--e---eC---------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--K---PA---------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|...+.....+.||+..  +   .+         ....++.....+....|.|.+++.+|+
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            457788899999999999999865555568999742  1   11         112466666666778899999999999


Q ss_pred             eEEEEEEEe
Q psy1095         134 GLYTIKVEN  142 (325)
Q Consensus       134 G~Y~C~~~~  142 (325)
                      |.|.|....
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999997653

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=3e-08  Score=67.70  Aligned_cols=78  Identities=19%  Similarity=0.358  Sum_probs=57.8

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeCC---------C-------------CCcEEEE-ecCC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPAT---------P-------------NARVTIR-EKED  119 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~~---------~-------------~~~~~~~-~~~~  119 (325)
                      +|.+.+.|..+.+.+|++|+|.|...+.....+.||+.  +..+.         .             ..++... ..+.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            47888999999999999999999987777778999972  22110         0             0122222 2344


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEe
Q psy1095         120 LRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus       120 ~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..+|+|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            56899999999999999998753

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=3.3e-08  Score=65.65  Aligned_cols=72  Identities=15%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---C---------CCCCcEEEEecCCeEEEEEccCCCCCCeE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---A---------TPNARVTIREKEDLRFLEISEVTLEDAGL  135 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  135 (325)
                      .+|..+.+.+|++|+|.|...+.....+.||+..  ..   +         ....++.....+....|.|.+++.+|+|.
T Consensus         5 tQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           5 TQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI   84 (106)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCC
Confidence            3455678999999999999876555678999742  11   1         11346666666667889999999999999


Q ss_pred             EEEEEE
Q psy1095         136 YTIKVE  141 (325)
Q Consensus       136 Y~C~~~  141 (325)
                      |.|...
T Consensus        85 YyCa~~   90 (106)
T d1lk3l1          85 YFCQQS   90 (106)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            999653

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.75  E-value=3.4e-08  Score=65.63  Aligned_cols=74  Identities=19%  Similarity=0.207  Sum_probs=55.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.........+.||+.  +...            ....++.....+....|.|.+++.+|+
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            45667778899999999999976555557899973  2111            113466666566778899999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      +.|.|.+.
T Consensus        84 A~YyCa~~   91 (107)
T d1mexl1          84 AEYFCQQY   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeEEEeEC
Confidence            99999754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.75  E-value=5.2e-08  Score=64.69  Aligned_cols=75  Identities=19%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +.+.|..+.+.+|++|+|.|.........+.||+..  ...            .....+.....+....|.|.+++.+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            456788888999999999999876555678999732  110            112344455556677899999999999


Q ss_pred             eEEEEEEEe
Q psy1095         134 GLYTIKVEN  142 (325)
Q Consensus       134 G~Y~C~~~~  142 (325)
                      |.|.|...+
T Consensus        84 a~YyCA~~~   92 (108)
T d1jhll_          84 AMYICQQHN   92 (108)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEeeCC
Confidence            999996543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.74  E-value=2.3e-08  Score=67.43  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=54.7

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---C---C------CCCcEEE--EecCCeEEEEEccCCC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---A---T------PNARVTI--REKEDLRFLEISEVTL  130 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---~---~------~~~~~~~--~~~~~~~~l~i~~~~~  130 (325)
                      .+.+.|..+.+.+|++|+|.|...+.....+.|||..  ..   +   .      ...++..  .......+|.|.+++.
T Consensus         2 ~V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             CEECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             CcEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence            3567788888999999999999876555678999832  11   0   0      0112222  2234567899999999


Q ss_pred             CCCeEEEEEEEeC
Q psy1095         131 EDAGLYTIKVENN  143 (325)
Q Consensus       131 ~d~G~Y~C~~~~~  143 (325)
                      +|+|.|.|.+...
T Consensus        82 ~Dsg~YyCa~~~~   94 (113)
T d2bnqd1          82 GDSATYLCAVRPT   94 (113)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCCcEEeEeEecC
Confidence            9999999988643

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.74  E-value=4.1e-08  Score=65.25  Aligned_cols=75  Identities=17%  Similarity=0.260  Sum_probs=56.5

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee------------CCCCCcEEEEecCCeEEEEEccCCCCC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP------------ATPNARVTIREKEDLRFLEISEVTLED  132 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d  132 (325)
                      .+++.|..+.+.+|++|+|.|.........+.||+..  ..            .....++.....+....|.|.+++.+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCc
Confidence            4567788888999999999999875555678999832  11            112345655556667889999999999


Q ss_pred             CeEEEEEEE
Q psy1095         133 AGLYTIKVE  141 (325)
Q Consensus       133 ~G~Y~C~~~  141 (325)
                      +|.|.|...
T Consensus        83 sA~YyCa~~   91 (107)
T d1tjgl1          83 FATYYCQQL   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CceEEEEEC
Confidence            999999653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.2e-07  Score=63.89  Aligned_cols=76  Identities=17%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeC--Ce-e--C----------CCCCcEEEEecC--CeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKD--GK-P--A----------TPNARVTIREKE--DLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~--~~-~--~----------~~~~~~~~~~~~--~~~~l~i~~~~  129 (325)
                      +++.|..+.+.+|++|+|.|...+. ....+.||+.  ++ +  +          ....++......  ....|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            5678888999999999999998653 3456899973  21 1  1          123456555432  35679999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy1095         130 LEDAGLYTIKVENN  143 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~  143 (325)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999987643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.72  E-value=5.8e-08  Score=64.52  Aligned_cols=75  Identities=21%  Similarity=0.333  Sum_probs=56.0

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +.+.|..+.+.+|++|+|.|.........+.||+..  ...            ....++.....+....|.|.+++.+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            456678888999999999998866556678999742  110            112466666666678899999999999


Q ss_pred             eEEEEEEEe
Q psy1095         134 GLYTIKVEN  142 (325)
Q Consensus       134 G~Y~C~~~~  142 (325)
                      |.|.|....
T Consensus        84 a~YyCa~~~   92 (107)
T d1d5il1          84 GIYYCLQYD   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecc
Confidence            999997643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.72  E-value=6.1e-08  Score=64.54  Aligned_cols=74  Identities=19%  Similarity=0.286  Sum_probs=55.9

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---C---------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---A---------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.........+.||+..  +.   +         ....++.....+....|.|.+++.+|+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            456688888999999999999865555678999832  11   1         112456665566678899999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|.+.
T Consensus        84 a~YyCA~~   91 (109)
T d1mqkl_          84 GSYYCQHH   91 (109)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEeee
Confidence            99999764

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.71  E-value=6.3e-08  Score=64.65  Aligned_cols=74  Identities=19%  Similarity=0.269  Sum_probs=55.6

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee------------CCCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP------------ATPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|...+.....+.||+..  +.            .....++.....+....|.|.+++.+|+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            456677888999999999999876555678999732  11            1113466666666678899999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|.+.
T Consensus        86 a~YyCA~~   93 (109)
T d1bwwa_          86 ATYYCQQY   93 (109)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEeec
Confidence            99999764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.71  E-value=3.1e-08  Score=66.95  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEE--ecCCeEEEEEccCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIR--EKEDLRFLEISEVTLE  131 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~--~~~~~~~l~i~~~~~~  131 (325)
                      +.+.|..+.+.+|++|+|.|.........+.|||..  +..            ....++...  .......|.|.+++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            566677788999999999999877667789999742  110            011233332  1233456999999999


Q ss_pred             CCeEEEEEEEe
Q psy1095         132 DAGLYTIKVEN  142 (325)
Q Consensus       132 d~G~Y~C~~~~  142 (325)
                      |+|.|.|.+..
T Consensus        84 Dsg~YyCa~~~   94 (115)
T d1lp9e1          84 DSALYYCALFL   94 (115)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCccceEEEEc
Confidence            99999998754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.71  E-value=3.6e-08  Score=66.65  Aligned_cols=76  Identities=12%  Similarity=0.192  Sum_probs=52.6

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--Cee---C---C-C--------CCcEEEEecCCeEEEEEccCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKP---A---T-P--------NARVTIREKEDLRFLEISEVTL  130 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~---~---~-~--------~~~~~~~~~~~~~~l~i~~~~~  130 (325)
                      +.+.|..+.+.+|++|+|.|.........+.||+.  +..   +   . .        ..++.....+....|.|.+++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            55666778899999999999987666677899973  211   1   0 0        0112222233456799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy1095         131 EDAGLYTIKVENN  143 (325)
Q Consensus       131 ~d~G~Y~C~~~~~  143 (325)
                      +|+|.|.|.+...
T Consensus        83 ~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          83 SDSAVYFCAVSGF   95 (115)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             cccceecccccCC
Confidence            9999999987643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=2.7e-08  Score=67.32  Aligned_cols=74  Identities=19%  Similarity=0.219  Sum_probs=54.0

Q ss_pred             EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee---C---------CCCCcEEEEecCCeEEEEEccCCCCCCe
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP---A---------TPNARVTIREKEDLRFLEISEVTLEDAG  134 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G  134 (325)
                      .+.|..+.+.+|++++|.|...+.-...+.||+..  ..   +         ....++.....+....|.|.+++.+|+|
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVA   84 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCe
Confidence            45677778999999999998765445568999842  11   1         1124555555556678999999999999


Q ss_pred             EEEEEEEe
Q psy1095         135 LYTIKVEN  142 (325)
Q Consensus       135 ~Y~C~~~~  142 (325)
                      .|.|....
T Consensus        85 vYyCa~~~   92 (119)
T d1f3rb2          85 TYFCYQYN   92 (119)
T ss_dssp             EEEEEEES
T ss_pred             EEEeeccC
Confidence            99997654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.69  E-value=2.4e-08  Score=66.38  Aligned_cols=74  Identities=20%  Similarity=0.279  Sum_probs=54.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--ee------------CCCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KP------------ATPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.........+.||+..  +.            .....++.........+|.|.+++.+|+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            456788888999999999999766555678999732  11            0112344444445667899999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|...
T Consensus        84 a~YyCa~~   91 (107)
T d3cx5k1          84 ATYFCQHH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             CcEEeeeC
Confidence            99999653

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.7e-08  Score=65.49  Aligned_cols=77  Identities=25%  Similarity=0.406  Sum_probs=56.7

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCC--ee---C---------------CCCCcEEEEecCCeEEEEE
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDG--KP---A---------------TPNARVTIREKEDLRFLEI  125 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~--~~---~---------------~~~~~~~~~~~~~~~~l~i  125 (325)
                      .+.+.|...++.+|++|+|.|.+... ....+.|||..  ..   +               ....++..........|.|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            35678888899999999999998653 34568999832  11   0               0123555555566778999


Q ss_pred             ccCCCCCCeEEEEEEEeC
Q psy1095         126 SEVTLEDAGLYTIKVENN  143 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+++.+|+|.|.|.+...
T Consensus        82 ~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          82 SDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             ccCCCCCCEEEeEeEcCC
Confidence            999999999999987643

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.69  E-value=1.2e-07  Score=62.64  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=53.3

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  133 (325)
                      +++.|..+.+.+|++|+|.|.... ....+.||+..  ...            ....++.....+...+|.|.+++.+|+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            457788888999999999998643 34457999742  100            112355555556678899999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|...
T Consensus        82 a~YyCa~~   89 (104)
T d1yqvl1          82 ATYYCQQW   89 (104)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99999653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.2e-07  Score=63.35  Aligned_cols=77  Identities=17%  Similarity=0.263  Sum_probs=50.7

Q ss_pred             eEecCCcEEEEEEEEec-CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         175 RCCDGDSVTFECQVQVV-PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      .+.+|+.++|.|.+.+. |.+.+.+.|++++..+.........  .........+.|.+.....+|...|+|.|.+..+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~--~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA--DRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC--SSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccccc--ccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            47799999999999864 4322479999998877532211110  11222334567888766666666999999987643

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.5e-08  Score=64.01  Aligned_cols=78  Identities=17%  Similarity=0.112  Sum_probs=55.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.+...|... |..|++|+|.|... .+...+.|+|++........ ..........+.|.+++..|+|.|.|...+.
T Consensus         3 PKPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1           3 PKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            468888888775 77999999999864 45567899998764321100 0001233456999999999999999997654


Q ss_pred             C
Q psy1095         144 Y  144 (325)
Q Consensus       144 ~  144 (325)
                      .
T Consensus        80 ~   80 (95)
T d1olla1          80 E   80 (95)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.67  E-value=1.1e-07  Score=63.80  Aligned_cols=71  Identities=18%  Similarity=0.206  Sum_probs=52.2

Q ss_pred             CCceEecCCCeEEEEEEEEec--CCCeeEEeeCCe--e---C---------CCCCcEEEEecCCeEEEEEccCCCCCCeE
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDGK--P---A---------TPNARVTIREKEDLRFLEISEVTLEDAGL  135 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~~--~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  135 (325)
                      |..+.+.+|++|+|.|...+.  ....+.||+...  .   +         ....++.....+....|.|.+++.+|++.
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence            345778899999999997653  345689998431  1   0         11235666556667889999999999999


Q ss_pred             EEEEEEe
Q psy1095         136 YTIKVEN  142 (325)
Q Consensus       136 Y~C~~~~  142 (325)
                      |.|....
T Consensus        87 YyCA~~~   93 (114)
T d2rhea_          87 YYCAAWN   93 (114)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecC
Confidence            9998754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.4e-08  Score=67.80  Aligned_cols=89  Identities=16%  Similarity=0.300  Sum_probs=58.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEec---CCCeeEEeeCCeeC--------------CCCCcEEEE--ecCCeEEEEEccCCC
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQ---PAPWTSWSKDGKPA--------------TPNARVTIR--EKEDLRFLEISEVTL  130 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~---p~~~v~W~~~~~~~--------------~~~~~~~~~--~~~~~~~l~i~~~~~  130 (325)
                      ..|..+.+.+|++|+|.|.....   ....+.|+|....-              ....++.+.  ......+|.|.+++.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            35677788899999999986431   22356898743110              112233332  334567899999999


Q ss_pred             CCCeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095         131 EDAGLYTIKVENNYGSVEATARLEIMDP  158 (325)
Q Consensus       131 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~  158 (325)
                      +|+|.|.|.+..........+.|.|...
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            9999999998644333445677777654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.65  E-value=1.6e-07  Score=62.73  Aligned_cols=75  Identities=17%  Similarity=0.310  Sum_probs=54.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEe--cCCCeeEEeeCC------eeCCCCCcEEEEec--CCeEEEEEccCCCCCCeEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTG--QPAPWTSWSKDG------KPATPNARVTIREK--EDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~------~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      +.+.|..+.+.+|++++|.|...+  .....+.||+..      ..+....++.....  .....|.|.+++.+|+|.|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            567788888999999999998854  245678999731      22333445544432  33568999999999999999


Q ss_pred             EEEEe
Q psy1095         138 IKVEN  142 (325)
Q Consensus       138 C~~~~  142 (325)
                      |.+..
T Consensus        82 CA~~~   86 (112)
T d1sq2n_          82 CGLGV   86 (112)
T ss_dssp             EEECB
T ss_pred             EEEec
Confidence            97753

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.65  E-value=3.1e-08  Score=66.88  Aligned_cols=76  Identities=25%  Similarity=0.318  Sum_probs=55.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe--eC------C------CCCcEEEEe--cCCeEEEEEccCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK--PA------T------PNARVTIRE--KEDLRFLEISEVTLE  131 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~--~~------~------~~~~~~~~~--~~~~~~l~i~~~~~~  131 (325)
                      +.+.|..+.+.+|++|+|.|.........+.||+...  ..      .      ...++....  .....+|.|.+++.+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            5667888889999999999998776667899997321  10      0      012333322  234678999999999


Q ss_pred             CCeEEEEEEEeC
Q psy1095         132 DAGLYTIKVENN  143 (325)
Q Consensus       132 d~G~Y~C~~~~~  143 (325)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          83 DSASYICVVSDR   94 (114)
T ss_dssp             GCSEEEEEEECS
T ss_pred             hCcccceeeecC
Confidence            999999998653

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=8.5e-08  Score=65.35  Aligned_cols=89  Identities=15%  Similarity=0.189  Sum_probs=56.7

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec----CCCeeEEeeCCe------eC----------CC----CCcEEEEe--cCCeE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ----PAPWTSWSKDGK------PA----------TP----NARVTIRE--KEDLR  121 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~----p~~~v~W~~~~~------~~----------~~----~~~~~~~~--~~~~~  121 (325)
                      ++..|..+.+..|++++|.|.+...    ....+.|++...      .+          ..    ..|+.+..  ..+..
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG   81 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence            4567788889999999999997532    234789987321      00          00    12333321  22345


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCe--eEEEEEEEEEE
Q psy1095         122 FLEISEVTLEDAGLYTIKVENNYG--SVEATARLEIM  156 (325)
Q Consensus       122 ~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~  156 (325)
                      +|.|.+++..|+|.|.|.+.+..+  .....+.|.|.
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            799999999999999999986433  23445566654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.65  E-value=5.9e-08  Score=64.09  Aligned_cols=72  Identities=24%  Similarity=0.351  Sum_probs=52.2

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      |..+.+.+|++|+|.|.........+.|||..  ...            ....++..........|.|.+++.+|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            44677889999999998765445568999742  111            1123555555667788999999999999999


Q ss_pred             EEEEeC
Q psy1095         138 IKVENN  143 (325)
Q Consensus       138 C~~~~~  143 (325)
                      |.+...
T Consensus        85 CA~~~~   90 (103)
T d8faba1          85 CQAWDN   90 (103)
T ss_dssp             EEEEET
T ss_pred             eeecCC
Confidence            976543

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.1e-08  Score=65.90  Aligned_cols=80  Identities=18%  Similarity=0.077  Sum_probs=54.5

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC-cEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      .+|.+...|... |..|++|+|.|... .+...+.|+|++....... ............+.|.+++..|+|.|.|...+
T Consensus         6 pkPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           6 PMPFISAKSSPV-IPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCCEEESSCSE-EETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCCCc-eeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            468888888764 88999999999865 4566889998764211111 10111122345689999999999999999876


Q ss_pred             CCe
Q psy1095         143 NYG  145 (325)
Q Consensus       143 ~~~  145 (325)
                      ...
T Consensus        84 ~~~   86 (99)
T d1ucta1          84 GHY   86 (99)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.64  E-value=7.9e-08  Score=62.67  Aligned_cols=83  Identities=17%  Similarity=0.197  Sum_probs=53.2

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.+...+.. .+..|+.++|.|.+.++.|....+.|+++|..+..+..........+..+...+.|.+..   ++.+.|+
T Consensus         4 P~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~---~~~~~yt   79 (100)
T d1muja1           4 PQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIP---SDDDIYD   79 (100)
T ss_dssp             CEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECC---CTTCCEE
T ss_pred             CEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcC---CCCCEEE
Confidence            444443322 345688999999999988777899999999887643221111112222344556666653   4566899


Q ss_pred             EEEEeCC
Q psy1095         245 CRVANEL  251 (325)
Q Consensus       245 C~~~~~~  251 (325)
                      |.+.+..
T Consensus        80 C~V~H~s   86 (100)
T d1muja1          80 CKVEHWG   86 (100)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9999864

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.6e-08  Score=67.24  Aligned_cols=91  Identities=19%  Similarity=0.341  Sum_probs=57.3

Q ss_pred             CeeEecCCcEEEEEEEEecCCC--CCeeEEeeCCEEe----------------c-cCCCCceEEEec-CCcceeEEEEEe
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPN--DHDISWFRNNRLI----------------K-LDSDMKPEVQVD-SKENLVIARLKI  232 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~--~~~~~W~~~~~~~----------------~-~~~~~~~~~~~~-~~~~~~~~~l~i  232 (325)
                      ...+.+|+++.|.|.+...+..  ...+.|++.....                . ....+..+.... .........|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            4567899999999998754332  2468898621110                0 001111010010 011113457999


Q ss_pred             CCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095         233 PHVYPEDEGEFTCRVANELGEVVTSACLIVD  263 (325)
Q Consensus       233 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  263 (325)
                      .+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999988887777777773

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.64  E-value=7.9e-08  Score=64.06  Aligned_cols=74  Identities=15%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCC--ee---C---------CCCCcEEEEecCCeEEEEEccCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDG--KP---A---------TPNARVTIREKEDLRFLEISEVTLED  132 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d  132 (325)
                      +++.|..+.+.+|++++|.|..... ....+.||+..  ..   +         ....++.....+....|.|.+++.+|
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED   83 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence            4566788889999999999987543 34468999742  21   1         11245555555667889999999999


Q ss_pred             CeEEEEEEE
Q psy1095         133 AGLYTIKVE  141 (325)
Q Consensus       133 ~G~Y~C~~~  141 (325)
                      +|.|.|.+.
T Consensus        84 sa~YyCa~~   92 (108)
T d2fx7l1          84 FAVYYCQQY   92 (108)
T ss_dssp             CSEEEEEEC
T ss_pred             cEEEeeecC
Confidence            999999764

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=2.7e-07  Score=61.33  Aligned_cols=76  Identities=16%  Similarity=0.213  Sum_probs=53.8

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecC---CCeeEEeeC--CeeC------------CCCCcEEEEecCCeEEEEEccCC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKD--GKPA------------TPNARVTIREKEDLRFLEISEVT  129 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p---~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~  129 (325)
                      .+.+ |..+.+.+|++++|.|...+..   ...+.||+.  ++..            ....++.....+....|.|.+++
T Consensus         3 ~~tQ-~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~   81 (110)
T d1oaql_           3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQ   81 (110)
T ss_dssp             CEEE-CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCC
T ss_pred             CEee-CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCC
Confidence            3444 4467799999999999986432   223789972  2111            11346666666777899999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy1095         130 LEDAGLYTIKVENN  143 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~  143 (325)
                      .+|+|.|.|.....
T Consensus        82 ~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          82 TEDEAIYFCALWYS   95 (110)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             ccccEeEEEEcccC
Confidence            99999999987543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.62  E-value=2.8e-07  Score=61.78  Aligned_cols=76  Identities=18%  Similarity=0.313  Sum_probs=55.1

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEec--CCCeeEEeeC--Ce----eCCCCCcEEEEec--CCeEEEEEccCCCCCCeEE
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKD--GK----PATPNARVTIREK--EDLRFLEISEVTLEDAGLY  136 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~--~~----~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y  136 (325)
                      .+.+.|..+.+.+|++|+|+|...+.  ....+.||+.  +.    .+....++.....  .....|.|.+++.+|+|.|
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceE
Confidence            35677888899999999999998753  4456899973  22    2233345544432  3356899999999999999


Q ss_pred             EEEEEe
Q psy1095         137 TIKVEN  142 (325)
Q Consensus       137 ~C~~~~  142 (325)
                      .|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            998743

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=7.6e-08  Score=63.37  Aligned_cols=90  Identities=12%  Similarity=0.177  Sum_probs=58.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+.......+..++|.|.+.++.+.+..|.|.++|..+..+..........+..+...+.|.|..-.......|
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEE
Confidence            34444433222222356789999999987766899999999887643322112222334556667888876655566799


Q ss_pred             EEEEEeCCCc
Q psy1095         244 TCRVANELGE  253 (325)
Q Consensus       244 ~C~~~~~~~~  253 (325)
                      +|.+.+....
T Consensus        85 tC~V~H~~~~   94 (102)
T d1q0xl2          85 SCQVTHEGHS   94 (102)
T ss_dssp             EEEEEETTEE
T ss_pred             EEEEEECCcc
Confidence            9999986543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.61  E-value=5.9e-08  Score=65.10  Aligned_cols=75  Identities=19%  Similarity=0.275  Sum_probs=51.4

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeCC-------C-----CCcEEE--EecCCeEEEEEccCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPAT-------P-----NARVTI--REKEDLRFLEISEVTLE  131 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~~-------~-----~~~~~~--~~~~~~~~l~i~~~~~~  131 (325)
                      +.+.|..+.+.+|++|+|.|.........+.||+..  ....       .     ..++..  .......+|.|.+++.+
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            455677788999999999999865544568999742  1110       0     112222  22234567999999999


Q ss_pred             CCeEEEEEEEe
Q psy1095         132 DAGLYTIKVEN  142 (325)
Q Consensus       132 d~G~Y~C~~~~  142 (325)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (110)
T d1u3ha1          82 DSATYFCAASA   92 (110)
T ss_dssp             SCSEEEECCEE
T ss_pred             CceeEeeeecC
Confidence            99999998753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.61  E-value=1.4e-07  Score=63.27  Aligned_cols=75  Identities=15%  Similarity=0.181  Sum_probs=53.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC-------C-----CCCcEEEE--ecCCeEEEEEccCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA-------T-----PNARVTIR--EKEDLRFLEISEVTLE  131 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~-------~-----~~~~~~~~--~~~~~~~l~i~~~~~~  131 (325)
                      +.+.|..+.+.+|++++|.|.........+.||+.  ++..       .     ...++...  ......+|.|.+++.+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            45667777889999999999987666667899973  2111       0     01233322  2345778999999999


Q ss_pred             CCeEEEEEEEe
Q psy1095         132 DAGLYTIKVEN  142 (325)
Q Consensus       132 d~G~Y~C~~~~  142 (325)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999998753

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.60  E-value=7.3e-08  Score=64.49  Aligned_cols=71  Identities=20%  Similarity=0.351  Sum_probs=49.2

Q ss_pred             CCceEecCCCeEEEEEEEEec-CCCeeEEeeC--CeeC------------CCCCcEEEEecCCeEEEEEccCCCCCCeEE
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKD--GKPA------------TPNARVTIREKEDLRFLEISEVTLEDAGLY  136 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  136 (325)
                      |..+.+.+|++|+|.|..... ....+.||+.  ++..            ....++..........|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            456778899999999987543 3456899983  2110            111233333345567899999999999999


Q ss_pred             EEEEEe
Q psy1095         137 TIKVEN  142 (325)
Q Consensus       137 ~C~~~~  142 (325)
                      .|.+..
T Consensus        85 yCa~~~   90 (110)
T d2esvd1          85 YCIVVR   90 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            998753

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=3e-08  Score=66.02  Aligned_cols=81  Identities=12%  Similarity=0.158  Sum_probs=50.5

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEecc---------------CCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL---------------DSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      .+.+|++|.|.|...  |.....+.|+|.......               ...+..+...     ..++.|.|.+++.+|
T Consensus        10 ~v~~G~~V~L~c~~~--p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l-----~~ngSL~I~~v~~~D   82 (107)
T d1l6za1          10 QVAEDNNVLLLVHNL--PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII-----YSNGSLLFQMITMKD   82 (107)
T ss_dssp             SCCTTCCEEEEEESC--CTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEE-----CTTSCEEECSCCGGG
T ss_pred             cccCCCCEEEEecCC--CCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEE-----cccccEEEcCCCchh
Confidence            466899999999742  332368999985432110               0111111111     123589999999999


Q ss_pred             CeEEEEEEEeCCCc-EEeEEEEEE
Q psy1095         240 EGEFTCRVANELGE-VVTSACLIV  262 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~-~~~~~~l~v  262 (325)
                      +|.|+|.+.+..+. ....+.|.|
T Consensus        83 ~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          83 MGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             CEEEEEEEEETTEEECCCCEEECC
T ss_pred             CEEEEEEEEECCCCEEEEEEEEEE
Confidence            99999999887643 334455544

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.60  E-value=1.6e-07  Score=62.84  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=52.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec-----CCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ-----PAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEV  128 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~-----p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~  128 (325)
                      +++.|..+.+.+|++|+|.|...+.     ....+.||+..  ...            ....++.....+....|.|.++
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~   83 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV   83 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSC
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCc
Confidence            4456777788999999999987542     23468999732  111            1123566666667788999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         129 TLEDAGLYTIKV  140 (325)
Q Consensus       129 ~~~d~G~Y~C~~  140 (325)
                      +.+|++.|.|..
T Consensus        84 ~~~DsAvYyCa~   95 (112)
T d1mjul1          84 EAEDVGVYYCLQ   95 (112)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccCCceEEEEe
Confidence            999999999954

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.59  E-value=1.2e-07  Score=63.95  Aligned_cols=76  Identities=11%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeC--CeeC-------CC------CCc--EEEEecCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKD--GKPA-------TP------NAR--VTIREKEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~--~~~~-------~~------~~~--~~~~~~~~~~~l~i~~~~  129 (325)
                      +.+.|..+.+.+|++|+|.|..... ....+.||+.  +...       ..      ..+  +..........|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            5566778889999999999987543 3446799983  2111       00      012  222233456789999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy1095         130 LEDAGLYTIKVENN  143 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~  143 (325)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          83 VVDSAVYFCALSGF   96 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccCCCceEeCCCC
Confidence            99999999987543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.59  E-value=2.5e-07  Score=61.78  Aligned_cols=73  Identities=21%  Similarity=0.303  Sum_probs=52.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec-----CCCeeEEeeC--Cee------------CCCCCcEEEEecCCeEEEEEccC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ-----PAPWTSWSKD--GKP------------ATPNARVTIREKEDLRFLEISEV  128 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~-----p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~  128 (325)
                      +++.|..+.+.+|++|+|.|...+.     ....+.||+.  |+.            .....++.....+....|.|.++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~   83 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV   83 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence            4566888889999999999986532     2245889973  211            11134565555566778999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         129 TLEDAGLYTIKV  140 (325)
Q Consensus       129 ~~~d~G~Y~C~~  140 (325)
                      +.+|+|.|.|..
T Consensus        84 ~~eDsAvYYC~~   95 (112)
T d1ncwl1          84 EAEDLGVYYCWQ   95 (112)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcCEeEEEEc
Confidence            999999999954

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.58  E-value=2e-07  Score=62.56  Aligned_cols=74  Identities=20%  Similarity=0.319  Sum_probs=53.0

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec------CCCeeEEeeC--Cee------------CCCCCcEEEEecCCeEEEEEcc
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ------PAPWTSWSKD--GKP------------ATPNARVTIREKEDLRFLEISE  127 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~------p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~  127 (325)
                      +.+.|..+.+.+|++|+|.|...+.      ....+.||+.  ++.            .....++.....+....|.|.+
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~   83 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS   83 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence            4566888889999999999986531      1234899984  211            1112355555556677899999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         128 VTLEDAGLYTIKVE  141 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~  141 (325)
                      ++.+|+|.|.|...
T Consensus        84 l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          84 VQAEDLAVYYCKQS   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCCCeEEEeccc
Confidence            99999999999753

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.58  E-value=1.6e-07  Score=62.90  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=52.5

Q ss_pred             CCceEecCCCeEEEEEEEEec--CCCeeEEeeCC--ee------------CCCCCcEEEEecCCeEEEEEccCCCCCCeE
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDG--KP------------ATPNARVTIREKEDLRFLEISEVTLEDAGL  135 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  135 (325)
                      |..+.+.+|++++|.|...+.  ....+.||+..  ..            .....++.....+...+|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            446789999999999987543  23468999731  11            011346666666677899999999999999


Q ss_pred             EEEEEEeC
Q psy1095         136 YTIKVENN  143 (325)
Q Consensus       136 Y~C~~~~~  143 (325)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.58  E-value=2.5e-07  Score=61.75  Aligned_cols=74  Identities=22%  Similarity=0.324  Sum_probs=54.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec----CCCeeEEeeC--CeeC------------CCCCcEEEEecCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ----PAPWTSWSKD--GKPA------------TPNARVTIREKEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~----p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~  129 (325)
                      +++.|..+.+.+|++|+|.|.....    ....+.||+.  ++..            ....++.....+....|.|.+++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            4567888889999999999987532    2234899984  2111            11246666666677889999999


Q ss_pred             CCCCeEEEEEEE
Q psy1095         130 LEDAGLYTIKVE  141 (325)
Q Consensus       130 ~~d~G~Y~C~~~  141 (325)
                      .+|+|.|.|...
T Consensus        84 ~~DsA~YyCa~~   95 (111)
T d2gsia1          84 EEDAATYYCSHI   95 (111)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             ccCCceEEEEEC
Confidence            999999999754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.5e-07  Score=61.40  Aligned_cols=72  Identities=18%  Similarity=0.320  Sum_probs=49.2

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +..|+.++|.|.+.|+.|....+.|.++|..+......... ...+..+...+.|.+.   .++.+.|+|.+.+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~-~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLS-FSKDWSFYLLYYTEFT---PTEKDEYACRVNHVT   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCE-ECTTSCEEEEEEEEEC---CCSSCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCcccccee-cCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCC
Confidence            45688999999999988777899999999988543222222 1222233344556554   456678999999864

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.1e-07  Score=60.20  Aligned_cols=75  Identities=21%  Similarity=0.260  Sum_probs=55.5

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.+...|.. .|..|++|+|.|.........+.|+|++......  ..  .......+.|.+++..|+|.|.|.....
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~~--~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQ--SGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EE--ECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--Ec--CCCcccEEEEeccccccCcEEEEEEEcC
Confidence            46888888876 5889999999998643344578999998643322  11  2234467999999999999999987643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.56  E-value=1.2e-07  Score=63.04  Aligned_cols=73  Identities=19%  Similarity=0.252  Sum_probs=52.6

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCCeEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDAGLY  136 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  136 (325)
                      +|..+.+.+|++|+|.|.........+.||+..  +..            ....++.....+...+|.|.+++.+|+|.|
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEE
Confidence            344677889999999998654444568999742  111            113455555566778899999999999999


Q ss_pred             EEEEEeC
Q psy1095         137 TIKVENN  143 (325)
Q Consensus       137 ~C~~~~~  143 (325)
                      .|.....
T Consensus        86 yCA~~~~   92 (109)
T d1w72l1          86 YCQVWDS   92 (109)
T ss_dssp             EEEEEET
T ss_pred             EEEecCC
Confidence            9987543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=2.2e-07  Score=63.25  Aligned_cols=92  Identities=21%  Similarity=0.250  Sum_probs=52.2

Q ss_pred             CcCeeEecCCcEEEEEEEEecC--CCCCeeEEeeCC--E----Eec----------cCCCCceEEEecCCcceeEEEEEe
Q psy1095         171 LENLRCCDGDSVTFECQVQVVP--PNDHDISWFRNN--R----LIK----------LDSDMKPEVQVDSKENLVIARLKI  232 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~--~~~~~~~W~~~~--~----~~~----------~~~~~~~~~~~~~~~~~~~~~l~i  232 (325)
                      +....+..|++++|.|......  .....+.|++..  .    .+.          ....+..+....+........|.|
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEE
Confidence            3456788999999999876322  122579998621  1    110          011111111111111113357999


Q ss_pred             CCCCCCCCeEEEEEEEeCCC--cEEeEEEEEE
Q psy1095         233 PHVYPEDEGEFTCRVANELG--EVVTSACLIV  262 (325)
Q Consensus       233 ~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v  262 (325)
                      .+++.+|+|.|.|.+.+..+  .....+.|.|
T Consensus        86 ~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            99999999999999987543  2333455555

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.56  E-value=2.4e-07  Score=61.90  Aligned_cols=74  Identities=18%  Similarity=0.284  Sum_probs=53.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec----CCCeeEEeeC--CeeC------------CCCCcEEEEecCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ----PAPWTSWSKD--GKPA------------TPNARVTIREKEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~----p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~  129 (325)
                      +++.|..+.+.+|++|+|.|.....    ....+.||+.  ++..            ....++.....+....|.|.+++
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   83 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccc
Confidence            4566788889999999999987431    2334899973  2211            11235555555667889999999


Q ss_pred             CCCCeEEEEEEE
Q psy1095         130 LEDAGLYTIKVE  141 (325)
Q Consensus       130 ~~d~G~Y~C~~~  141 (325)
                      .+|+|.|.|.+.
T Consensus        84 ~~Dsa~YyCa~~   95 (111)
T d1j05a_          84 ADDVATYYCQQT   95 (111)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccCccEEEeec
Confidence            999999999764

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4e-07  Score=58.88  Aligned_cols=79  Identities=15%  Similarity=0.220  Sum_probs=53.7

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+. ..|..|+.|+|.|...   .....+.|++++...........   .    ....+.+.|.+++..|+|.
T Consensus         3 PKPsLsa~P~-~~V~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~~~~~~---~----~~~~a~F~i~~v~~~~~G~   71 (95)
T d1olla1           3 PKPFIWAEPH-FMVPKEKQVTICCQGN---YGAVEYQLHFEGSLFAVDRPKPP---E----RINKVKFYIPDMNSRMAGQ   71 (95)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECC---TTCCEEEEEETTEEEEEECCSSC---T----TCCEEEEEESSCCGGGCEE
T ss_pred             CCCEEEeeCC-CcccCCCcEEEEEecC---CCccEEEEEECCCCcceeEEccC---C----CccEEEEEEeeeecCCCce
Confidence            3567766664 4578999999999863   22268999998865432111000   0    0134689999999999999


Q ss_pred             EEEEEEeCCC
Q psy1095         243 FTCRVANELG  252 (325)
Q Consensus       243 Y~C~~~~~~~  252 (325)
                      |.|...+...
T Consensus        72 Y~C~y~~~~~   81 (95)
T d1olla1          72 YSCIYRVGEL   81 (95)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEeCCCCC
Confidence            9999876543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.55  E-value=1.8e-07  Score=62.06  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=53.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--Cee---C---------CCCCcEEEEecCCeEEEEEccCCCCCCeE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKP---A---------TPNARVTIREKEDLRFLEISEVTLEDAGL  135 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  135 (325)
                      .+|..+.+.+|++|+|.|.........+.||+.  ++.   +         .-..++.....+....|.|.+++.+|+|.
T Consensus         4 tQP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~   83 (108)
T d1nfde1           4 IQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA   83 (108)
T ss_dssp             ECCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred             ECCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCce
Confidence            346677888999999999875444446899973  211   1         11246666666677889999999999999


Q ss_pred             EEEEEEe
Q psy1095         136 YTIKVEN  142 (325)
Q Consensus       136 Y~C~~~~  142 (325)
                      |.|....
T Consensus        84 YyCA~~~   90 (108)
T d1nfde1          84 YYCLSSY   90 (108)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9998753

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.55  E-value=3.1e-07  Score=62.14  Aligned_cols=76  Identities=17%  Similarity=0.288  Sum_probs=55.3

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC-----------------CCCCcEEEEec-CCeEEEEEc
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA-----------------TPNARVTIREK-EDLRFLEIS  126 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~-----------------~~~~~~~~~~~-~~~~~l~i~  126 (325)
                      .+.+.|..+.+.+|++|+|.|...+.....+.|||.  ++.+                 ....++..... +....|.|.
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~   82 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVT   82 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEEC
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccc
Confidence            356778888899999999999987666678999983  2110                 01235554433 335679999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy1095         127 EVTLEDAGLYTIKVEN  142 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~  142 (325)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          83 SAHPEDSGFYVCSALA   98 (118)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccccccCceEEEEEec
Confidence            9999999999998753

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.55  E-value=3e-07  Score=61.60  Aligned_cols=74  Identities=20%  Similarity=0.259  Sum_probs=54.0

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec-----CCCeeEEeeCC--ee------------CCCCCcEEEEecCCeEEEEEccC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ-----PAPWTSWSKDG--KP------------ATPNARVTIREKEDLRFLEISEV  128 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~-----p~~~v~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~  128 (325)
                      +++.|..+.+.+|++|+|.|...+.     ....+.||+..  +.            .....++.....+....|.|.++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            4566888889999999999997542     22468999732  11            11134566555666789999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         129 TLEDAGLYTIKVE  141 (325)
Q Consensus       129 ~~~d~G~Y~C~~~  141 (325)
                      +.+|+|.|.|...
T Consensus        85 ~~~DsavYyCa~~   97 (113)
T d1n4xl_          85 EAEDLGIYYCFQG   97 (113)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCEEEEEEEC
Confidence            9999999999643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.54  E-value=6e-07  Score=59.89  Aligned_cols=75  Identities=19%  Similarity=0.303  Sum_probs=53.1

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC----------------CCCCcEEEEecCCeEEEEEccC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA----------------TPNARVTIREKEDLRFLEISEV  128 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~----------------~~~~~~~~~~~~~~~~l~i~~~  128 (325)
                      .+.+.|....+.+|++++|.|...+ ....+.|||.  ++..                ................|.|.++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            4567788888999999999998754 3457899983  2110                0111222333455678999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         129 TLEDAGLYTIKVEN  142 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~  142 (325)
                      +.+|+|.|.|....
T Consensus        82 ~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TPSQTSVYFCASGG   95 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHhhCEEEEEeeCC
Confidence            99999999998754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.7e-07  Score=59.86  Aligned_cols=72  Identities=17%  Similarity=0.256  Sum_probs=48.6

Q ss_pred             CceEecCCCeEEEEEEEEec--CCCeeEEeeCCe--e---C---------CCCCcEEEEe--cCCeEEEEEccCCCCCCe
Q psy1095          73 HNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDGK--P---A---------TPNARVTIRE--KEDLRFLEISEVTLEDAG  134 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~~--~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~G  134 (325)
                      ..+.+.+|++|+|.|.....  ....+.|+|...  .   +         ....++.+..  ..+..+|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            34568899999999987542  234568997321  0   0         1113444332  345678999999999999


Q ss_pred             EEEEEEEeCC
Q psy1095         135 LYTIKVENNY  144 (325)
Q Consensus       135 ~Y~C~~~~~~  144 (325)
                      .|.|.+....
T Consensus        84 ~Y~C~v~~~~   93 (108)
T d1hkfa_          84 HYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEecCC
Confidence            9999987443

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1e-07  Score=62.47  Aligned_cols=81  Identities=11%  Similarity=0.040  Sum_probs=52.3

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+. ..|..|+.|+|.|.... +.  ..+.|++++............ ...+    ..+.+.|.+++..|+|.
T Consensus         6 pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~--~~f~l~k~g~~~~~~~~~~~~-~~~~----~~a~F~l~~vt~~~~G~   76 (99)
T d1ucta1           6 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EA--YLTQLMIIKNSTYREIGRRLK-FWNE----TDPEFVIDHMDANKAGR   76 (99)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TC--SEEEEEEEETTEEEECSEECC---------CCCEEEECSCCGGGCEE
T ss_pred             CCCEEEecCC-CceeCCCeEEEEEcCCC-CC--cEEEEEECCCcCceecccccc-CCCC----ceEEEEecCCCHHHCce
Confidence            4577766664 46889999999997642 22  689999876422111000000 0000    12479999999999999


Q ss_pred             EEEEEEeCCC
Q psy1095         243 FTCRVANELG  252 (325)
Q Consensus       243 Y~C~~~~~~~  252 (325)
                      |.|...+...
T Consensus        77 Y~C~y~~~~~   86 (99)
T d1ucta1          77 YQCQYRIGHY   86 (99)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEECCCc
Confidence            9999988655

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=2.1e-07  Score=60.72  Aligned_cols=71  Identities=17%  Similarity=0.321  Sum_probs=48.6

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ..|+.++|.|.+.|+.|....++|.++|..+......... ...+..+...+.|.+.   .++.+.|+|.+.+..
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~-~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMS-FSKDWSFYILAHTEFT---PTETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEE-ECTTCCEEEEEEEEEC---CCSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECcee-ECCCCCEEEEEEeEec---CcCCCEEEEEEEeCC
Confidence            4688899999999987766899999999987643222111 1222234445566664   455668999998864

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.53  E-value=8e-08  Score=64.90  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=53.4

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC------CC-------CCcEEEEe--cCCeEEEEEccCC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA------TP-------NARVTIRE--KEDLRFLEISEVT  129 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~------~~-------~~~~~~~~--~~~~~~l~i~~~~  129 (325)
                      .+++.|..+.+.+|++|+|.|.........+.||+.  ++..      ..       ..++....  ......|.|.+++
T Consensus         2 ~vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1j8hd1           2 SVTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH   81 (115)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred             CEEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence            356677788899999999999987655667999973  2111      00       11222221  2234569999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy1095         130 LEDAGLYTIKVENN  143 (325)
Q Consensus       130 ~~d~G~Y~C~~~~~  143 (325)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          82 MSDAAEYFCAVSES   95 (115)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             ccCCccceeeecCC
Confidence            99999999988643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.7e-08  Score=63.65  Aligned_cols=89  Identities=12%  Similarity=0.203  Sum_probs=57.5

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+....-..++.++|.|.+.++.+.+..|.|.++|..+..+..........+..+...+.|.|..........|
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEE
Confidence            45554433332222467799999999987766899999999887654222222223334556667888876554445579


Q ss_pred             EEEEEeCCC
Q psy1095         244 TCRVANELG  252 (325)
Q Consensus       244 ~C~~~~~~~  252 (325)
                      +|.+.+...
T Consensus        85 tC~V~H~~~   93 (102)
T d1rzfl2          85 SCQVTHEGS   93 (102)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEECCc
Confidence            999998753

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.52  E-value=4e-07  Score=59.38  Aligned_cols=73  Identities=15%  Similarity=0.221  Sum_probs=49.1

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +..|+..+|.|.+.++.|....+.|++||..+..+..........+..+...+.|.+..   .+...|+|.+.+..
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   88 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWG   88 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECC
Confidence            44578889999999987766899999999987643221111112223444556777754   33457999999864

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.51  E-value=5.4e-07  Score=60.35  Aligned_cols=78  Identities=19%  Similarity=0.339  Sum_probs=50.1

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE----eccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL----IKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG  241 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  241 (325)
                      ...+....+.+|+.|+|.|..++.......+.|++.  +..    +....+....  .+.  ......|+|.+++.+|+|
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~--~~~--~~~~~~L~I~~l~~~Dsa   79 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVET--VNK--GSKSFSLRISDLRVEDSG   79 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEE--EET--TTTEEEEEECSCCGGGCE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccce--eEC--CCCceeeeecccccCCcc
Confidence            344556678899999999998754322257899972  221    1122222111  111  113468999999999999


Q ss_pred             EEEEEEEe
Q psy1095         242 EFTCRVAN  249 (325)
Q Consensus       242 ~Y~C~~~~  249 (325)
                      .|.|.+..
T Consensus        80 ~YyCa~~~   87 (113)
T d1vesa_          80 TYKCQAFY   87 (113)
T ss_dssp             EEEEEEEE
T ss_pred             eEeeeeec
Confidence            99998854

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.50  E-value=4.2e-07  Score=60.86  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=52.1

Q ss_pred             CCceEecCCCeEEEEEEEEec---CCCeeEEeeCC--eeC------------CCCCcEEEEecCCeEEEEEccCCCCCCe
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQ---PAPWTSWSKDG--KPA------------TPNARVTIREKEDLRFLEISEVTLEDAG  134 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~---p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G  134 (325)
                      |..+.+.+|++|+|.|...+.   ....+.||+..  +..            ....++.....+....|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            667789999999999997653   22458999732  111            1123555555566788999999999999


Q ss_pred             EEEEEEEeC
Q psy1095         135 LYTIKVENN  143 (325)
Q Consensus       135 ~Y~C~~~~~  143 (325)
                      .|.|...+.
T Consensus        87 ~YyCa~~~~   95 (112)
T d1lgva1          87 DYYCSSYDG   95 (112)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecC
Confidence            999987543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.50  E-value=8.1e-07  Score=57.51  Aligned_cols=75  Identities=20%  Similarity=0.316  Sum_probs=50.4

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      ...++.++|.|.+.++.+....++|.++|..+..+..........+..+...+.|.+.   .++...|+|.+.+....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCCC
Confidence            3457789999999998777799999999998865433222222222334445566664   34455899999986543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3e-07  Score=61.33  Aligned_cols=91  Identities=11%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEe-cCCC--eeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP--WTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~  137 (325)
                      .|.|....   .+.+|+.++|.|.+.+ .|.+  .+.|++++..+............+    ...|.+.....++...|+
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~lt   80 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV   80 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEE
Confidence            45665433   2779999999999875 6754  689999988763211100000111    234666655555566999


Q ss_pred             EEEEeCCee-------EEEEEEEEEECC
Q psy1095         138 IKVENNYGS-------VEATARLEIMDP  158 (325)
Q Consensus       138 C~~~~~~~~-------~~~~~~l~v~~~  158 (325)
                      |++.+..+.       ......|.|.+.
T Consensus        81 C~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          81 CRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEEcCcCCccccccccceeEEeEEEeC
Confidence            999876532       233445666553

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.49  E-value=2.2e-07  Score=62.77  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeC--Cee---C------------CCCCcEEEEe--cCCeEEEEEc
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKD--GKP---A------------TPNARVTIRE--KEDLRFLEIS  126 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~--~~~---~------------~~~~~~~~~~--~~~~~~l~i~  126 (325)
                      .+.+.|..+.+.+|++|+|.|..... ....+.||+.  +..   +            ....++....  .....+|+|.
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence            35667788889999999999998643 4567899972  211   1            0123554433  2334679999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy1095         127 EVTLEDAGLYTIKVENN  143 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~  143 (325)
                      +++.+|+|.|.|.+...
T Consensus        82 ~~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          82 PVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             CccccccccceeeEecC
Confidence            99999999999987643

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=5.5e-07  Score=60.45  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CE-E--e-c-------cCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NR-L--I-K-------LDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~-~--~-~-------~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      +..+....+.+|+.|+|.|........ ..+.|++.  +. +  + .       .....++.....  .......|.|.+
T Consensus         3 tqsP~~l~v~~G~~vtl~C~~~~~~~~-~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L~I~~   79 (114)
T d3bp5a1           3 TFYPAWLTVSEGANATFTCSLSNWSED-LMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQL--PNRHDFHMNILD   79 (114)
T ss_dssp             EEESSEEEEETTCCEEEEEEESCCCTT-CEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEEC--TTSSEEEEEESS
T ss_pred             eECCCeEEECCCCCEEEEEEECCCCCc-ceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEe--CCCCEEEEEECc
Confidence            344556778999999999998643322 57899972  22 1  1 0       011111111111  112456799999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy1095         235 VYPEDEGEFTCRVANE  250 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~  250 (325)
                      ++.+|+|.|.|.+...
T Consensus        80 ~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          80 TRRNDSGIYLCGAISL   95 (114)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cCcCCCeEEEEEEEeC
Confidence            9999999999988654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.4e-07  Score=61.58  Aligned_cols=68  Identities=25%  Similarity=0.421  Sum_probs=46.7

Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEeeCCeeC--C---------C---CCcEEEEe---cCCeEEEEEccCCCCCCeEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA--T---------P---NARVTIRE---KEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~--~---------~---~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      +...+|++|+|+|.........+.|++.....  .         .   ..++....   ..+..+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            34678999999999876666788999854211  0         0   11221111   123457999999999999999


Q ss_pred             EEEEe
Q psy1095         138 IKVEN  142 (325)
Q Consensus       138 C~~~~  142 (325)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99854

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.47  E-value=2.3e-07  Score=62.62  Aligned_cols=75  Identities=13%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCC--eeC---------C----CCCcEEEEe--cCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDG--KPA---------T----PNARVTIRE--KEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~--~~~---------~----~~~~~~~~~--~~~~~~l~i~~~~  129 (325)
                      +.+.|..+.+.+|++|+|.|.... .....+.||+..  ...         .    ...++....  ......|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            456677888999999999998754 334568999732  110         0    012333332  3445789999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         130 LEDAGLYTIKVEN  142 (325)
Q Consensus       130 ~~d~G~Y~C~~~~  142 (325)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (115)
T d1fo0a_          82 IEDSAVYFCAMRG   94 (115)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccccccccceeec
Confidence            9999999998753

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=5.6e-07  Score=57.71  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=53.6

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV  140 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  140 (325)
                      .+|.+...|... |..|++|+|.|... .+...+.|+|+|....    ...........+.|.+++..|+|.|+|..
T Consensus         3 pkPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           3 DTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCCEEEEESCSE-EETTCEEEEEEECS-SSCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCCEEEEeCCCc-ccCCCcEEEEECCC-CCCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEe
Confidence            578888888765 88899999999864 3556789999875321    12222345567999999999999999964

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.47  E-value=3.4e-07  Score=61.73  Aligned_cols=74  Identities=22%  Similarity=0.342  Sum_probs=51.9

Q ss_pred             eEecCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCC-----eeC------C-----------CCCcEEEEe--cCCeEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDG-----KPA------T-----------PNARVTIRE--KEDLRF  122 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~-----~~~------~-----------~~~~~~~~~--~~~~~~  122 (325)
                      +++.|....+.+|++|+|.|.+.+ .....+.||+..     +.+      .           ...++....  ......
T Consensus         1 v~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   80 (115)
T d2atpb1           1 LIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPF   80 (115)
T ss_dssp             CEEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCE
T ss_pred             CEeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEE
Confidence            356788888999999999999876 345578999742     111      0           112333222  233567


Q ss_pred             EEEccCCCCCCeEEEEEEE
Q psy1095         123 LEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus       123 l~i~~~~~~d~G~Y~C~~~  141 (325)
                      |.|.+++.+|+|.|.|.+.
T Consensus        81 L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          81 LSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             EeecccCCCCCcEEEEeEc
Confidence            9999999999999999864

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.47  E-value=7.3e-07  Score=58.88  Aligned_cols=76  Identities=16%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CE-E-ec--------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NR-L-IK--------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~-~-~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      ...+....+.+|+.|+|.|.......  ..+.|++.  +. + +.        .....+......+    ....|.|.++
T Consensus         4 tQsP~~l~~~~G~svtl~C~~s~~~~--~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~L~I~~~   77 (106)
T d1a0ql1           4 TQSPSSLSASLGGKVTITCKASQDIK--KYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSG----RDYSFSISNL   77 (106)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCT--TCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET----TEEEEEECSC
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCCC--CCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCC----CEeeeEehhh
Confidence            34455667889999999998754443  45899972  11 1 10        0111111111222    3468999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      ..+|+|.|.|.+..
T Consensus        78 ~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          78 EPEDIATYYCLQYY   91 (106)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             cccCCEeEEEEEeC
Confidence            99999999998643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.2e-07  Score=62.54  Aligned_cols=75  Identities=19%  Similarity=0.309  Sum_probs=50.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC-------CCeeEEeeCCeeCC---------------C--CCcEEEEec--CCeEEE
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP-------APWTSWSKDGKPAT---------------P--NARVTIREK--EDLRFL  123 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p-------~~~v~W~~~~~~~~---------------~--~~~~~~~~~--~~~~~l  123 (325)
                      ..|..+++.+|++|.|.|.+....       ...+.|++....-.               .  ..++.+..+  .+..+|
T Consensus         6 ~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   85 (121)
T d2g5ra1           6 TMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTL   85 (121)
T ss_dssp             ECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCE
T ss_pred             EeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEE
Confidence            346677899999999999985211       13568987532110               0  124454332  335679


Q ss_pred             EEccCCCCCCeEEEEEEEeCC
Q psy1095         124 EISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus       124 ~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      .|.+++.+|+|.|.|.+....
T Consensus        86 ~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          86 SIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             EECSCCGGGCEEEEEEEEETT
T ss_pred             EECCCChHHCEEEEEEEEeCC
Confidence            999999999999999996543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.45  E-value=6.1e-07  Score=59.83  Aligned_cols=78  Identities=19%  Similarity=0.317  Sum_probs=49.2

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CE----EeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NR----LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      ..+....+..|+.++|.|...+..-....+.|++.  +.    .+....+.  ......  ......|.|.+++.+|+|.
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~--~~~~~~--~~~~~~L~I~~l~~~Dsa~   79 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRY--VETVNS--GSKSFSLRINDLTVEDGGT   79 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTE--EEEEET--TTTEEEEEECSCCGGGCEE
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcE--eeEEec--CCceeeeEecCCcCccCEE
Confidence            33445677889999999988643322267899982  11    12112221  111111  1134689999999999999


Q ss_pred             EEEEEEeC
Q psy1095         243 FTCRVANE  250 (325)
Q Consensus       243 Y~C~~~~~  250 (325)
                      |.|.+...
T Consensus        80 YyCA~~~~   87 (112)
T d1sq2n_          80 YRCGLGVA   87 (112)
T ss_dssp             EEEEECBT
T ss_pred             EeEEEecC
Confidence            99987654

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=5e-07  Score=59.70  Aligned_cols=76  Identities=17%  Similarity=0.295  Sum_probs=48.7

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +..+....+.+|+.++|.|.......  ..+.|++.  +....          .....++.....+    ....|.|.++
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~--~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~----~~~~L~I~~~   78 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDID--DDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG----TDFVFTIENT   78 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEESSC
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCC--ccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCC----CeeeecccCC
Confidence            34455667889999999998754433  56899962  22111          1111112211222    3578999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          79 LSEDVGDYYCLQSF   92 (106)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccccCEEEeEecCc
Confidence            99999999997644

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=3.6e-07  Score=61.36  Aligned_cols=79  Identities=16%  Similarity=0.373  Sum_probs=51.5

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----c--------CCCCceEEEecCCcceeEEEEEeC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----L--------DSDMKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----~--------~~~~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      ...+....+.+|+.|+|.|...+...  ..+.|+|.  +..+.    .        ..+.....    ........|.|.
T Consensus         4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~--~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~   77 (113)
T d2bnqd1           4 TQIPAALSVPEGENLVLNCSFTDSAI--YNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASL----DKSSGRSTLYIA   77 (113)
T ss_dssp             ECSSSEEEEETTCCEEEEEEESCCCE--EEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEE----ETTTTEEEEEES
T ss_pred             EeeCCEEEEcCCCCEEEEEEEecCcc--cCCeEEEeccccccceeeeeccceecccccceeeee----ccCCCEEEeeee
Confidence            44455677889999999999876544  57889982  22110    0        11111111    111245789999


Q ss_pred             CCCCCCCeEEEEEEEeCCC
Q psy1095         234 HVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +++.+|+|.|.|.+....+
T Consensus        78 ~~~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          78 ASQPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             SCCGGGCEEEEEEEEESSS
T ss_pred             cCCCCCCcEEeEeEecCCC
Confidence            9999999999999875543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=3.2e-07  Score=61.67  Aligned_cols=75  Identities=16%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------CC------CCcEEE--EecCCeEEEEEccCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------TP------NARVTI--REKEDLRFLEISEVTLE  131 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------~~------~~~~~~--~~~~~~~~l~i~~~~~~  131 (325)
                      +.+.|..+.+.+|++|+|.|...+ ....+.||+..  +..      ..      ..++..  ........|.|.+++.+
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG   81 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence            456688888999999999998754 33468999832  110      00      122222  22345678999999999


Q ss_pred             CCeEEEEEEEeC
Q psy1095         132 DAGLYTIKVENN  143 (325)
Q Consensus       132 d~G~Y~C~~~~~  143 (325)
                      |+|.|.|.....
T Consensus        82 Dsa~YyCa~~~~   93 (115)
T d1ogad1          82 DTGLYLCAGAGS   93 (115)
T ss_dssp             GCEEEEEEEECT
T ss_pred             ceeeEcccccCC
Confidence            999999987644

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.6e-07  Score=62.03  Aligned_cols=76  Identities=22%  Similarity=0.403  Sum_probs=52.6

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCce-EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP-EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ..++.++|.|.+.++.+.+..+.|.++|..+........ .....+..+...+.|.|..-.......|+|.+.+...
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            346689999999998776689999999998754321111 1112333455667888876655566689999998644

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.44  E-value=9.6e-07  Score=57.34  Aligned_cols=84  Identities=17%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+.. .+..|+..+|.|.+.++.|....+.|.++|..+..+..........+..+...+.|.+..   .+...|
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~y   80 (99)
T d1uvqa1           5 VPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIY   80 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCE
T ss_pred             CCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEE
Confidence            4555443221 245678899999999998777899999999988643211111112223344556666654   344579


Q ss_pred             EEEEEeCC
Q psy1095         244 TCRVANEL  251 (325)
Q Consensus       244 ~C~~~~~~  251 (325)
                      +|.+.+..
T Consensus        81 tC~V~H~s   88 (99)
T d1uvqa1          81 DCKVEHWG   88 (99)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998864

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1e-06  Score=58.58  Aligned_cols=78  Identities=14%  Similarity=0.297  Sum_probs=46.2

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EE---e-ccC----CCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RL---I-KLD----SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~---~-~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      ..+.+|+.|+|.|...........+.|+|..  ..   + ...    ...................|.|.+++.+|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            4567899999999865433322467898731  11   1 000    000000001111112457899999999999999


Q ss_pred             EEEEEeCC
Q psy1095         244 TCRVANEL  251 (325)
Q Consensus       244 ~C~~~~~~  251 (325)
                      .|.+....
T Consensus        86 ~C~v~~~~   93 (108)
T d1hkfa_          86 WCRIYRPS   93 (108)
T ss_dssp             EEEEECTT
T ss_pred             EEEEecCC
Confidence            99987544

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.43  E-value=7.9e-07  Score=59.40  Aligned_cols=74  Identities=23%  Similarity=0.423  Sum_probs=51.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--Cee---C-------------CCCCcEEEEec-CCeEEEEEccC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKP---A-------------TPNARVTIREK-EDLRFLEISEV  128 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~---~-------------~~~~~~~~~~~-~~~~~l~i~~~  128 (325)
                      +.+.|....+.+|++|+|.|...+ ....+.|||.  ++.   +             ....++..... +....|.|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   80 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA   80 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred             cEECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence            356677888999999999997543 3457899973  211   0             01234444332 23468999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         129 TLEDAGLYTIKVEN  142 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~  142 (325)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (111)
T d2esve1          81 ELEDSGVYFCASSQ   94 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             ccCCCceEEEeeeC
Confidence            99999999997653

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.43  E-value=5.4e-07  Score=60.24  Aligned_cols=73  Identities=19%  Similarity=0.270  Sum_probs=51.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeCC--eeC------------CCCCcEEEEe--cCCeEEEEEccCCCC
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDG--KPA------------TPNARVTIRE--KEDLRFLEISEVTLE  131 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~--~~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~  131 (325)
                      .+|..+.+.+|++|+|.|...+..  ...+.|||..  +..            ....++....  ......|.|.+++.+
T Consensus         5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE   84 (111)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence            346678899999999999986533  3358999842  111            0123444432  355778999999999


Q ss_pred             CCeEEEEEEEe
Q psy1095         132 DAGLYTIKVEN  142 (325)
Q Consensus       132 d~G~Y~C~~~~  142 (325)
                      |+|.|.|....
T Consensus        85 Dsa~YyCA~~~   95 (111)
T d1cd0a_          85 DEADYYCQSYD   95 (111)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeecc
Confidence            99999997654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.42  E-value=2.6e-07  Score=62.20  Aligned_cols=83  Identities=18%  Similarity=0.333  Sum_probs=52.3

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EE---e-c-cCCCCc---eEEEecCCcceeEEEEEeCCCC
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RL---I-K-LDSDMK---PEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~---~-~-~~~~~~---~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      +...+....+.+|+.++|.|.......  ..+.|++..  ..   + . ......   ...............|.|.+++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~--~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~   80 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPF--SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ   80 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCC--SEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCc--cCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccC
Confidence            344455677889999999999865444  679999722  11   1 0 000000   0001111122356789999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy1095         237 PEDEGEFTCRVANEL  251 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~  251 (325)
                      .+|+|.|.|.+....
T Consensus        81 ~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          81 LSDSASYICVVSDRG   95 (114)
T ss_dssp             GGGCSEEEEEEECSC
T ss_pred             hhhCcccceeeecCC
Confidence            999999999987643

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.42  E-value=7.8e-07  Score=57.74  Aligned_cols=73  Identities=19%  Similarity=0.246  Sum_probs=44.3

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ..++..+|.|.+.++.+....+.|+++|..+..+..........+..+...+.|.+   ...+...|+|.+.+..-
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~---~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLET---VPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEEC---CCCTTCEEEEEEECTTC
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeE---cCCCCCEEEEEEEECCC
Confidence            34667789999999887778999999998875432211111122223333344443   45677799999998654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.41  E-value=4.4e-07  Score=60.79  Aligned_cols=72  Identities=18%  Similarity=0.330  Sum_probs=50.4

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC-CCeeEEeeC--CeeCC------------CCCcEEEEecCCeEEEEEccCCCCCCe
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP-APWTSWSKD--GKPAT------------PNARVTIREKEDLRFLEISEVTLEDAG  134 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  134 (325)
                      ..|..+.+.+|++|+|.|...+.. ...+.|||.  ++.+.            ...++.+..+.....|.|.+++.+|+|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            456677889999999999986533 345899983  22110            012333334455678999999999999


Q ss_pred             EEEEEEE
Q psy1095         135 LYTIKVE  141 (325)
Q Consensus       135 ~Y~C~~~  141 (325)
                      .|.|...
T Consensus        83 ~YyCa~~   89 (112)
T d1kgcd1          83 VYYCILP   89 (112)
T ss_dssp             EEEEECC
T ss_pred             eEeeeEe
Confidence            9999764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.9e-07  Score=59.98  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEe--cc--------CCCCceEEEe-cCCcceeEEEEEeCCCCCCCCeE
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI--KL--------DSDMKPEVQV-DSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~--~~--------~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      +...+|++|+|.|.......  ..+.|++.....  ..        .......... .........+|.|.+++.+|+|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKS--IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSC--CCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             EEEEcCCcEEEEEEEecCCC--ceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence            34568999999998764444  679999853321  11        1111101000 00011124579999999999999


Q ss_pred             EEEEEEe
Q psy1095         243 FTCRVAN  249 (325)
Q Consensus       243 Y~C~~~~  249 (325)
                      |.|.+.+
T Consensus        82 Y~C~v~~   88 (97)
T d2nxyb1          82 YICEVED   88 (97)
T ss_dssp             EEEEETT
T ss_pred             EEEEEec
Confidence            9999954

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=9.3e-07  Score=60.07  Aligned_cols=83  Identities=17%  Similarity=0.228  Sum_probs=52.4

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE------e-ccCCCCceEEEecC---Cc-------ce
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL------I-KLDSDMKPEVQVDS---KE-------NL  225 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~------~-~~~~~~~~~~~~~~---~~-------~~  225 (325)
                      |.+...+....+.+|++++|.|.+.+...  ..+.|++.  +..      + .............+   ..       ..
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~--~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~   79 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVS--QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   79 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCS--SCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccC--CCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC
Confidence            56667777888899999999999876554  67999872  221      1 00100000000000   00       01


Q ss_pred             eEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         226 VIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       226 ~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      ....|.|.+++.+|+|.|.|.+..
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEeC
Confidence            346899999999999999998753

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.5e-06  Score=58.29  Aligned_cols=78  Identities=18%  Similarity=0.254  Sum_probs=49.6

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EE------eccC----------CCCceEEEecCCcceeEEE
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RL------IKLD----------SDMKPEVQVDSKENLVIAR  229 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~------~~~~----------~~~~~~~~~~~~~~~~~~~  229 (325)
                      ...|....+.+|++|+|.|.+...... ..+.|++..  ..      +...          ...+......+    ....
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~~-~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~----~~~~   78 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNPT-SGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG----DTFV   78 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCC-SCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEET----TEEE
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcCC-CCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCC----CChh
Confidence            444566778899999999998654432 568999822  11      0000          01111111111    3468


Q ss_pred             EEeCCCCCCCCeEEEEEEEeC
Q psy1095         230 LKIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       230 l~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      |.|.+++.+|+|.|.|.+...
T Consensus        79 L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          79 LTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEESSCCGGGCEEEEEEEEET
T ss_pred             cEEccCCCCCCEEEeEeEcCC
Confidence            999999999999999998643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=1.9e-06  Score=56.90  Aligned_cols=77  Identities=16%  Similarity=0.323  Sum_probs=49.0

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-------cCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-------LDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      +...+....+.+|+.++|.|.......  ..+.|++.  +..   +.       ...........++    ....|.|.+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~--~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~   77 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSIS--KSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG----TDFTLTISS   77 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS----SEEEEEECS
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcC--CceEEEEccccCCCeEEEEeeccccCCccccccccCCC----CEEEeEeee
Confidence            344455667889999999998865433  56889872  111   10       1111112212222    456899999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|+|.|.|.+.+
T Consensus        78 l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          78 LEPEDFAMYICQQHN   92 (108)
T ss_dssp             CCTTCCSEEEEEECS
T ss_pred             eEeccceEEEEeeCC
Confidence            999999999997543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.37  E-value=2.2e-06  Score=55.65  Aligned_cols=77  Identities=14%  Similarity=0.134  Sum_probs=54.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .+|.+...|.. .|..|++|+|.|... .+...+.|+|+|........ ..........+.|..+...|+|.|.|.....
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLP-AGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEE-CEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccEEE-ccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            57888888876 478999999999864 45668899998864332111 1112233445677888889999999987544

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.37  E-value=1.9e-06  Score=57.66  Aligned_cols=74  Identities=12%  Similarity=0.182  Sum_probs=50.8

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC---------------CCCCcEEEE-ecCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA---------------TPNARVTIR-EKEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~---------------~~~~~~~~~-~~~~~~~l~i~~~~  129 (325)
                      +.+.|....+.+|++|+|.|... .....+.|||.  +..+               ....++... ..+....|.|.+++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            55667778899999999999863 33457899973  2110               001222222 23445679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         130 LEDAGLYTIKVEN  142 (325)
Q Consensus       130 ~~d~G~Y~C~~~~  142 (325)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (113)
T d1j8he1          82 TNQTSMYLCASSS   94 (113)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCcccEEeeEcc
Confidence            9999999998764

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.37  E-value=5.1e-07  Score=60.88  Aligned_cols=82  Identities=21%  Similarity=0.272  Sum_probs=50.8

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe---c-cCC---------CCceEEEecCCcceeEEEEE
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI---K-LDS---------DMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~---~-~~~---------~~~~~~~~~~~~~~~~~~l~  231 (325)
                      +...+....+.+|+.|+|.|........ ..+.|++  .+...   . ...         ..+..  ...........|.
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~-~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~--~~~~~~~~~~~L~   79 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSN-PDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFS--VKHILTQKAFHLV   79 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSS-CCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEE--EEEEGGGTEEEEE
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccC-CcEEEEEeCCCCceEEeeecccccccccCccceEEE--EEecCceeEEeee
Confidence            3445567788999999999988654322 6789987  22211   1 000         00111  1111112446899


Q ss_pred             eCCCCCCCCeEEEEEEEeCC
Q psy1095         232 IPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       232 i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      |.+++.+|+|.|.|.+....
T Consensus        80 I~~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          80 ISPVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             ESSCCGGGCEEEEEEEECTT
T ss_pred             ecCccccccccceeeEecCC
Confidence            99999999999999877544

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.37  E-value=3.9e-07  Score=60.81  Aligned_cols=76  Identities=12%  Similarity=0.168  Sum_probs=53.1

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC------C------CCCcEEEEe--cCCeEEEEEccCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA------T------PNARVTIRE--KEDLRFLEISEVTLE  131 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~------~------~~~~~~~~~--~~~~~~l~i~~~~~~  131 (325)
                      +.+.|..+.+.+|++|+|.|.........+.|||.  |+..      .      ...++....  ......|.|.+++.+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            56778888899999999999976655567899983  2111      0      012333322  233567999999999


Q ss_pred             CCeEEEEEEEeC
Q psy1095         132 DAGLYTIKVENN  143 (325)
Q Consensus       132 d~G~Y~C~~~~~  143 (325)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999987543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.8e-07  Score=61.15  Aligned_cols=92  Identities=15%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             CcCeeEecCCcEEEEEEEEecC-CCCCeeEEeeCCEE-----e-cc----CCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRL-----I-KL----DSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~-~~~~~~~W~~~~~~-----~-~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      +..+.+.+|++|+|.|...... .....+.|++....     + ..    ....................|.|.+++.+|
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            3456788999999999864221 11145789873211     1 00    000000000111111245789999999999


Q ss_pred             CeEEEEEEEeCCCcEEeEEEEEE
Q psy1095         240 EGEFTCRVANELGEVVTSACLIV  262 (325)
Q Consensus       240 ~G~Y~C~~~~~~~~~~~~~~l~v  262 (325)
                      +|.|.|.+..........+.|.|
T Consensus        86 sG~Y~C~v~~~~~~~~~~v~L~V  108 (116)
T d1xeda_          86 SGRYKCGLGINSRGLSFDVSLEV  108 (116)
T ss_dssp             CEEEEEEESCGGGCCEEEEEEEE
T ss_pred             CEEEEEEEEcCCCCceEeEEEEE
Confidence            99999998654444444556665

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.36  E-value=6.2e-07  Score=60.10  Aligned_cols=75  Identities=20%  Similarity=0.326  Sum_probs=50.5

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC------CCC----CcEE---EEecCCeEEEEEccCCCCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA------TPN----ARVT---IREKEDLRFLEISEVTLED  132 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~------~~~----~~~~---~~~~~~~~~l~i~~~~~~d  132 (325)
                      +.+.|..+.+.+|++|+|.|.... ....+.||+..  ...      ...    ....   .........|.|.+++.+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            556788888999999999999764 34568999832  110      000    0000   0112345679999999999


Q ss_pred             CeEEEEEEEeC
Q psy1095         133 AGLYTIKVENN  143 (325)
Q Consensus       133 ~G~Y~C~~~~~  143 (325)
                      +|.|.|.+...
T Consensus        83 sa~YyCa~~~~   93 (113)
T d1h5ba_          83 SGTYFCAAEAS   93 (113)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEecCC
Confidence            99999987643

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.5e-06  Score=54.70  Aligned_cols=71  Identities=15%  Similarity=0.331  Sum_probs=47.8

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .++.++|.|.+.++.|....+.|++||..+..+.........++ ..+...+.|.+..   .+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~---~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPP---GEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECT---TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECC---CCCCEEEEEEEeCC
Confidence            46678999999998776689999999999864432222222232 2344445566543   45668999999864

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=1.2e-06  Score=57.72  Aligned_cols=76  Identities=17%  Similarity=0.246  Sum_probs=48.7

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEec----------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIK----------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +..+....+.+|+.|+|.|.......  ..+.|++  .|....          ............+    ....|.|.++
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~--~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l   78 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEIS--GYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSG----SDYSLTISSL   78 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCT--TCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET----TEEEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCC--CCEEEEEcCCCCcceeEEeccccccCCCCCceEecccC----CEEEEEEhhh
Confidence            34455667889999999998765444  5689997  222211          0111111111111    3468999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|+|.|.|.+.+
T Consensus        79 ~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          79 ESEDFADYYCLQYA   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             cccCCeEEEEecCc
Confidence            99999999997653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=1.3e-06  Score=57.87  Aligned_cols=76  Identities=18%  Similarity=0.305  Sum_probs=49.1

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----------cCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----------LDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ++..+....+.+|++++|.|.......  ..+.|++.  +..+.          .....++.....+    ....|.|.+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~--~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~----~~~~L~I~~   77 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIG--NNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG----TDFTLSINS   77 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEESS
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCC--cceEEEEeCCCCccEEeeecccCCCceeCCcceecccC----CEEEEEEcc
Confidence            344455677889999999998754333  56899973  22110          0111122222222    457899999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         235 VYPEDEGEFTCRVA  248 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~  248 (325)
                      ++.+|+|.|.|.+.
T Consensus        78 ~~~~Dsa~YyCa~~   91 (107)
T d1j1pl_          78 VETEDFGMYFCQQA   91 (107)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcCCCEEEEEEcC
Confidence            99999999999764

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=2.9e-06  Score=57.20  Aligned_cols=70  Identities=19%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             CCceEecCCCeEEEEEEEEecCCC---eeEEeeC--CeeC---------------CCCCcEEEEecCCeEEEEEccCCCC
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAP---WTSWSKD--GKPA---------------TPNARVTIREKEDLRFLEISEVTLE  131 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~---~v~W~~~--~~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~~  131 (325)
                      |..+.+.+|++|+|.|........   .+.|||.  ++..               ...........+....|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            566678899999999998643222   4789983  2210               0111222333455678999999999


Q ss_pred             CCeEEEEEEE
Q psy1095         132 DAGLYTIKVE  141 (325)
Q Consensus       132 d~G~Y~C~~~  141 (325)
                      |+|.|.|.+.
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999874

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.35  E-value=1.1e-06  Score=56.82  Aligned_cols=73  Identities=18%  Similarity=0.312  Sum_probs=45.2

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ..++..+|.|.+.++.|.+..+.|.++|..+..+..........+..+...+.|.+   ...+...|+|.+.+..-
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM---TPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC---CSCTTCCEEEEEECTTC
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc---CCCCCCEEEEEEEeCCC
Confidence            34677899999999888779999999998776432211111122223444455655   34556789999998644

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.34  E-value=5.4e-06  Score=53.99  Aligned_cols=74  Identities=19%  Similarity=0.205  Sum_probs=51.2

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      +..|+..+|.|.+.++.+....+.|.++|..+..... .......+..+...+.|.+..   ++...|+|.+.+..-.
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~-~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l~   88 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGP-TFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPDR   88 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCC-EEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEe-ceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCCC
Confidence            3568888999999998877789999999987653332 222223344455566777654   3445799999997543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.34  E-value=1.3e-06  Score=58.64  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec---c-------CCCCceEEEecCCcceeEEEEEeCC
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK---L-------DSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      +.+.+..+.+.+|+.++|.|.......  ..+.|+|.  +..+.   .       .......  ...........|.|.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~--~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~I~~   79 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYS--PFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFH--ATLHKSSSSFHLQKSS   79 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSS--CCEEEEEECTTSCCEEEEESCSSTTCCCCSSCE--ECCBGGGTBCCEEESS
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCc--CCeeEEEeCCCCceeeeeeeeeccCCcceeeee--eeccCCCCeEEeeccc
Confidence            344455677899999999999876554  67999973  21110   0       0011111  1111122345799999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy1095         235 VYPEDEGEFTCRVANE  250 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~  250 (325)
                      ++.+|+|.|.|.+...
T Consensus        80 ~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          80 AQLSDSALYYCALFLA   95 (115)
T ss_dssp             CCGGGCEEEEEEEEEC
T ss_pred             cccccCccceEEEEcC
Confidence            9999999999987654

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=2.1e-06  Score=56.85  Aligned_cols=76  Identities=14%  Similarity=0.283  Sum_probs=49.0

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +..+....+.+|++|+|.|.......  ..+.|++.  +..   +.       .............    ....|.|.++
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~--~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l   78 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVG--TYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSA----TDFTLTISSV   78 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSC
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcC--CceEEEEcccCCCCEEEEEecccccCCccceEEeeccC----CeeecEEHhh
Confidence            34455677889999999999865444  56999972  211   10       0111111111122    4578999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          79 QADDDADYYCGQSY   92 (107)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             eecCCceEEEEecC
Confidence            99999999997643

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1.1e-06  Score=58.14  Aligned_cols=76  Identities=14%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      ...+....+.+|++|+|.|.......  ..+.|++.  +....          .....++.....+    ....|.|.++
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~--~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~----~~~~L~I~~~   78 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIY--SRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSG----KDYTLSITSL   78 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS----SSEEEEESSC
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcc--cccEEEEcCCCccceeEEeeccccCCccccccceecCC----CeEEeEEccc
Confidence            34455677889999999998865443  46899982  22110          1111112211111    3368999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          79 QTEDVATYFCQQYW   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             ccccCCcEEEeecc
Confidence            99999999997643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.33  E-value=1e-06  Score=59.16  Aligned_cols=81  Identities=10%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec-----cCCCCce------EEEecCCcceeEEEEEeCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK-----LDSDMKP------EVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~-----~~~~~~~------~~~~~~~~~~~~~~l~i~~  234 (325)
                      ...+....+.+|++|+|.|........ ..+.|++.  +..+.     .......      ......  ......|.|.+
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~-~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~   80 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTT-YYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQK--STSSFNFTITA   80 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSS-CEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEET--TTTEEEEEESS
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcC-ccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcC--CCCEEEEeecc
Confidence            344456678999999999987643321 56889982  22110     0000000      111111  12457899999


Q ss_pred             CCCCCCeEEEEEEEeCC
Q psy1095         235 VYPEDEGEFTCRVANEL  251 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~~  251 (325)
                      ++.+|+|.|.|.+....
T Consensus        81 ~~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          81 SQVVDSAVYFCALSGFY   97 (114)
T ss_dssp             CCGGGCEEEEEEEECSB
T ss_pred             cccccCCCceEeCCCCC
Confidence            99999999999876543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5.6e-06  Score=53.24  Aligned_cols=66  Identities=18%  Similarity=0.351  Sum_probs=45.3

Q ss_pred             CCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEec-CCe----EEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095          79 LGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREK-EDL----RFLEISEVTLEDAGLYTIKVENNYGSV  147 (325)
Q Consensus        79 ~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~  147 (325)
                      .++.++|.|.+.| +|.+.|+|++++..+........... ++.    ..|.+   ...+...|+|.+.+.....
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEecCCCC
Confidence            5788999999987 69899999999988865433332222 222    23444   3456679999998876543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.32  E-value=1.1e-06  Score=58.90  Aligned_cols=74  Identities=12%  Similarity=0.197  Sum_probs=50.2

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC-------C--------CCCcEEEE-ecCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA-------T--------PNARVTIR-EKEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~-------~--------~~~~~~~~-~~~~~~~l~i~~~~  129 (325)
                      +.+.|..+.+.+|++|+|.|... .....+.||+..  +.+       .        ...++... ..+...+|.|.+++
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             cEEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            34567778899999999999975 345578999732  110       0        01122222 12335579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         130 LEDAGLYTIKVEN  142 (325)
Q Consensus       130 ~~d~G~Y~C~~~~  142 (325)
                      .+|+|.|.|....
T Consensus        81 ~~DSa~YyCa~~~   93 (114)
T d1ogae1          81 KNPTAFYLCASSS   93 (114)
T ss_dssp             SCCCEEEEEEEES
T ss_pred             cCCceeEEEeecc
Confidence            9999999997654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.5e-06  Score=55.92  Aligned_cols=70  Identities=17%  Similarity=0.384  Sum_probs=46.5

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      .|+.++|.|.+.|+.|....+.|.++|..+.....  ......+ ..+...+.|.+.   ..+...|+|.+.+..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~--~~~~~~~~~t~~~~s~l~~~---~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELR--GDVLHNGNGTYQSWVVVAVP---PQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEE--EEEEETTTTEEEEEEEEEEC---TTCCSCEEEEEEETTC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEE--eeeecCCCCeEEEEEEeEeC---CCCCCEEEEEEEECCC
Confidence            47889999999998877689999999987653221  1111222 233344455553   4455689999998643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.32  E-value=1.2e-06  Score=58.69  Aligned_cols=74  Identities=19%  Similarity=0.332  Sum_probs=50.9

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC----------------CCCCcEEEEe-cCCeEEEEEccC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA----------------TPNARVTIRE-KEDLRFLEISEV  128 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~----------------~~~~~~~~~~-~~~~~~l~i~~~  128 (325)
                      +.+.|..+.+.+|++++|.|... .....+.||+.  ++..                ....++.... .....+|.|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~-~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDPI-SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT   80 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEECC-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred             eEECCCeEEECCCCCEEEEEEEC-CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence            35667788899999999999854 34457899983  2100                0122333332 233568999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         129 TLEDAGLYTIKVEN  142 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~  142 (325)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          81 QQEDSAVYLCASSL   94 (112)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             CcCCCEEEEEeeeC
Confidence            99999999998753

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=1.9e-06  Score=56.90  Aligned_cols=71  Identities=14%  Similarity=0.288  Sum_probs=46.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-------cCCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-------LDSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      ....+.+|+.++|.|.......  ..+.|++.  +..   +.       .....++.....+    ....|.|.+++.+|
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~--~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~----~~~~L~I~~~~~~D   81 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVT--SRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG----TDFTLTIDPVEADD   81 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCCGGG
T ss_pred             CeEEECCCCCEEEEEEeCCCCC--ccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCC----CEEEeEECCcChhh
Confidence            4567889999999999865443  56899972  211   11       0111112211222    34689999999999


Q ss_pred             CeEEEEEEE
Q psy1095         240 EGEFTCRVA  248 (325)
Q Consensus       240 ~G~Y~C~~~  248 (325)
                      +|.|.|.+.
T Consensus        82 sa~YyCa~~   90 (106)
T d1lk3l1          82 TAIYFCQQS   90 (106)
T ss_dssp             CEEEEEEEC
T ss_pred             CCCcccccc
Confidence            999999654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.9e-06  Score=54.94  Aligned_cols=78  Identities=15%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE--EEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV--TIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      ..|.+...|..+ |..|++|+|.|... .....+.++|++.........  ..........+.|.+++..|+|.|+|...
T Consensus         3 pkPsLsa~P~~~-v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2           3 IKPTLSAQPSPV-VNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred             CCCEEEeeCCCc-cCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence            468888888765 88999999999864 345578888887653321110  11112334569999999999999999875


Q ss_pred             eC
Q psy1095         142 NN  143 (325)
Q Consensus       142 ~~  143 (325)
                      ..
T Consensus        81 ~~   82 (98)
T d1ugna2          81 DS   82 (98)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.31  E-value=2.1e-06  Score=56.74  Aligned_cols=76  Identities=17%  Similarity=0.310  Sum_probs=49.3

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-------cCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-------LDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      +.+.+....+.+|+.|+|.|.......  ..+.|++.  +..   +.       .....+.....++    ....|.|.+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~--~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~   77 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVT--SALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSG----TEFTLTIST   77 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEESS
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCC--ccEEEEeccCCccceEEEeecccccCCCCcceEEeccC----CEEEEEecc
Confidence            345556677889999999998864433  57889872  211   11       1111112211222    457899999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         235 VYPEDEGEFTCRVA  248 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~  248 (325)
                      ++.+|+|.|.|.+.
T Consensus        78 l~~~DsA~YyCa~~   91 (107)
T d1tjgl1          78 LRPEDFATYYCQQL   91 (107)
T ss_dssp             CCGGGCSEEEEEEC
T ss_pred             ceeCcCceEEEEEC
Confidence            99999999999654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=1.1e-06  Score=58.60  Aligned_cols=77  Identities=12%  Similarity=0.272  Sum_probs=47.8

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec---c--CCC-----CceEEEecCCcceeEEEEEeCCCC
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK---L--DSD-----MKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~---~--~~~-----~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ..+....+.+|+.++|.|.......  ..+.|++.  +....   .  ...     ........  .......|.|.++.
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~--~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~   79 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAF--DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN--KREKKLSLHIADSQ   79 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTE--EEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE--TGGGEEEEEESSCC
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCC--cEEEEEeeccccceeeeeeeccccccccccceeEEEC--CCCCeeEeEeccCC
Confidence            3445677889999999998865433  56899973  21110   0  000     00010000  11245789999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          80 PGDSATYFCAASA   92 (110)
T ss_dssp             TTSCSEEEECCEE
T ss_pred             CCCceeEeeeecC
Confidence            9999999998764

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.30  E-value=2.4e-06  Score=57.21  Aligned_cols=74  Identities=22%  Similarity=0.303  Sum_probs=50.9

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC---------------CCCCcEEEEe-cCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA---------------TPNARVTIRE-KEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~---------------~~~~~~~~~~-~~~~~~l~i~~~~  129 (325)
                      +.+.|..+.+.+|++|+|.|...+ ....+.||+.  ++..               ....++.... ......|.|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           2 VTQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE   80 (113)
T ss_dssp             CEEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC
Confidence            346677788999999999998643 3457899982  2111               1112333322 2345689999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         130 LEDAGLYTIKVEN  142 (325)
Q Consensus       130 ~~d~G~Y~C~~~~  142 (325)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          81 LGDSALYLCASSL   93 (113)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cccceeeeeeeeC
Confidence            9999999998753

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=4.6e-06  Score=54.14  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcEEEEecCC-e-EEEEEccCCCCCCeEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARVTIREKED-L-RFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~~~~~-~-~~l~i~~~~~~d~G~Y~C~  139 (325)
                      .+|.+.+.+... ...|+.++|.|.+.|+ | ...|+|+++|..+............+ . .......+...+.+.|+|.
T Consensus         3 ~~P~V~v~~~~~-~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   81 (99)
T d1lk2b_           3 KTPQIQVYSRHP-PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR   81 (99)
T ss_dssp             BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCEEEEEcCCC-ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEE
Confidence            467765543322 4568889999999984 4 34789999999886543332222222 1 1222223345566789999


Q ss_pred             EEeCC
Q psy1095         140 VENNY  144 (325)
Q Consensus       140 ~~~~~  144 (325)
                      +.+..
T Consensus        82 V~H~s   86 (99)
T d1lk2b_          82 VKHDS   86 (99)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3e-06  Score=55.04  Aligned_cols=81  Identities=17%  Similarity=0.227  Sum_probs=50.1

Q ss_pred             CCCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcEEEEe-cCCe-EEEEEccCCCCCCeEEEE
Q psy1095          63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARVTIRE-KEDL-RFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        63 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~~-~~~~-~~l~i~~~~~~d~G~Y~C  138 (325)
                      ..+|.+.+.+.. .+..|+.++|.|.+.|+ | ...++|.++|..+.......... .++. .......+..++.+.|+|
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            456776654322 24578999999999994 5 34789999999886432211122 2221 122223345566779999


Q ss_pred             EEEeCC
Q psy1095         139 KVENNY  144 (325)
Q Consensus       139 ~~~~~~  144 (325)
                      .+.+..
T Consensus        82 ~V~H~s   87 (100)
T d1k5nb_          82 RVNHVT   87 (100)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            998754

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.28  E-value=1.4e-06  Score=58.33  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC---------------CCCCcEEEE-ecCCeEEEEEccC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA---------------TPNARVTIR-EKEDLRFLEISEV  128 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~---------------~~~~~~~~~-~~~~~~~l~i~~~  128 (325)
                      .+++.|..+.+.+|++++|.|.... ....+.||+..  +..               ....++... ..+....|.|.++
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            4567788888999999999998543 34578999842  110               001233222 2233467999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         129 TLEDAGLYTIKVEN  142 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~  142 (325)
                      +.+|+|.|.|.+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          82 ELEDSAMYFCASSL   95 (113)
T ss_dssp             CGGGCEEECEEEES
T ss_pred             CcCCceeEEEEeec
Confidence            99999999997653

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.28  E-value=3.7e-06  Score=56.74  Aligned_cols=76  Identities=16%  Similarity=0.309  Sum_probs=53.5

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------------CCCCcEEEEe--cCCeEEEEEccC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------------TPNARVTIRE--KEDLRFLEISEV  128 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------------~~~~~~~~~~--~~~~~~l~i~~~  128 (325)
                      .++.++..+.+.+|++++|.|...+..  ...+.||+.  ++.+            ....++....  ......|.|.++
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~   82 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence            355666777899999999999987543  356899973  2111            1123554443  244678999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         129 TLEDAGLYTIKVEN  142 (325)
Q Consensus       129 ~~~d~G~Y~C~~~~  142 (325)
                      +.+|+|.|.|....
T Consensus        83 ~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          83 SERDEGSYYCACDT   96 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCCceeecCccc
Confidence            99999999997643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=2.7e-06  Score=56.36  Aligned_cols=76  Identities=18%  Similarity=0.315  Sum_probs=48.7

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-------cCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-------LDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ++..|....+.+|+.++|.|.......  ..+.|++.  +..   +.       ......+.....+    ....|.|.+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~--~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~----~~~~L~I~~   77 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIY--SYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG----TQFSLKINS   77 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESS
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcC--cccceeeccccCCCeEEEEeeccccCCcCCCEEEeccC----CEEEEEEcc
Confidence            344455677889999999998764433  56899982  221   11       1111112211222    457899999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         235 VYPEDEGEFTCRVA  248 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~  248 (325)
                      ++.+|+|.|.|.+.
T Consensus        78 ~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          78 LLPEDFGSYYCQHH   91 (109)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             ccccCCeeEEEeee
Confidence            99999999999765

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.28  E-value=2.7e-06  Score=55.19  Aligned_cols=80  Identities=19%  Similarity=0.240  Sum_probs=49.6

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcE--EEEecCCeE-EEEEccCCCCCCeEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARV--TIREKEDLR-FLEISEVTLEDAGLYTI  138 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~--~~~~~~~~~-~l~i~~~~~~d~G~Y~C  138 (325)
                      .||.+.+.|.. .+..|+.++|.|.+.|+ | ...|+|+++|..+......  .....++.. ......+...+.+.|+|
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            46777765543 35678999999999994 4 4688999999888643111  111122211 11222334456678999


Q ss_pred             EEEeCC
Q psy1095         139 KVENNY  144 (325)
Q Consensus       139 ~~~~~~  144 (325)
                      .+.+..
T Consensus        81 ~V~H~s   86 (100)
T d1muja1          81 KVEHWG   86 (100)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            998764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.28  E-value=2.5e-06  Score=56.20  Aligned_cols=75  Identities=15%  Similarity=0.270  Sum_probs=48.4

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CE---Eec-------cCCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NR---LIK-------LDSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ..+....+.+|+.++|.|.......  ..+.|++.  +.   .+.       .....++....++    ....|.|.+++
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~--~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~----~~~~L~I~~~~   78 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIE--TWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSG----TEFTLTISGLQ   78 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEEESCC
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCC--CcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccC----CEEEEEEcccc
Confidence            4455677889999999998764433  56899973  21   110       1111111111222    44689999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|+|.|.|.+..
T Consensus        79 ~~Dsa~YyCa~~~   91 (106)
T d1op3k1          79 FDDFATYHCQHYA   91 (106)
T ss_dssp             GGGCSEEEEEEEC
T ss_pred             ccCCCcEeeeeCC
Confidence            9999999997654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.2e-06  Score=56.44  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=52.0

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+. ..|..|++|+|.|.......  ..|.|+|+|......    ..  ..+    ..+.+.|.+++.+|+|.
T Consensus         4 PkP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~--~~f~L~k~g~~~~~~----~~--~~~----~~a~F~l~~v~~~~~G~   70 (96)
T d1ucta2           4 GKPFLSADRG-LVLMPGENISLTCSSAHIPF--DRFSLAKEGELSLPQ----HQ--SGE----HPANFSLGPVDLNVSGI   70 (96)
T ss_dssp             CCCEEEESSC-SEECTTCCCEEEEECSSSCC--SEEEEEETTCSSCCS----EE--ECS----SSEEEECCSCCGGGCEE
T ss_pred             CCCEEEEeCC-CccCCCCeEEEEEeCCCCCc--eEEEEEECCcccceE----Ec--CCC----cccEEEEeccccccCcE
Confidence            3566666654 47889999999997532222  578999988532221    11  111    12679999999999999


Q ss_pred             EEEEEEeCC
Q psy1095         243 FTCRVANEL  251 (325)
Q Consensus       243 Y~C~~~~~~  251 (325)
                      |+|......
T Consensus        71 Y~C~y~~~~   79 (96)
T d1ucta2          71 YRCYGWYNR   79 (96)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEcCC
Confidence            999886543

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.5e-06  Score=57.09  Aligned_cols=74  Identities=14%  Similarity=0.286  Sum_probs=52.2

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      .+..++|.|.+.++.+....|.|+++|..+....... .....+..+...+.|.|..-.......|+|.+.+...
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~-~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTA-STTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEE-EEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceee-eEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            4567999999999777667899999999886543222 2223344555667788876554456689999998754

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=4.1e-06  Score=53.15  Aligned_cols=71  Identities=21%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .++.++|.|.+.++.+.+..+.|.++|..+..+..........+..+...+.|.+..-   +...|+|.+.+..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEECC
Confidence            4568999999999888778999999999886543322222233334445566777543   3346999998754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.25  E-value=3.9e-06  Score=55.64  Aligned_cols=77  Identities=18%  Similarity=0.312  Sum_probs=49.3

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CE---Eec-------cCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NR---LIK-------LDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ++..+....+.+|+.++|.|...+...  ..+.|++.  +.   .+.       .....++.....+    ....|.|.+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~--~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~----~~~~L~I~~   79 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDII--KYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSG----TDYTFTISS   79 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESS
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCC--CcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCC----CEeEEEEee
Confidence            344455677889999999999865444  56889872  11   111       1111112211222    346899999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|+|.|.|.+..
T Consensus        80 l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          80 LQPEDIATYYCQQYQ   94 (109)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             ceeCcCceEEEeecC
Confidence            999999999997653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.25  E-value=1.7e-06  Score=55.73  Aligned_cols=63  Identities=17%  Similarity=0.281  Sum_probs=44.5

Q ss_pred             CCeEEEEEEEEecCCCeeEEeeCC--ee---C---C-----CCCcEEEE--ecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          80 GDTVRFQCSVTGQPAPWTSWSKDG--KP---A---T-----PNARVTIR--EKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        80 g~~v~l~C~~~~~p~~~v~W~~~~--~~---~---~-----~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      |++|+|.|.........+.|||..  ..   +   .     ...++...  ......+|.|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            789999999877677789999832  11   0   0     11234333  223457899999999999999998754

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.5e-06  Score=57.52  Aligned_cols=74  Identities=19%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEec---C---CCeeEEeeCCeeC---------------CCCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQ---P---APWTSWSKDGKPA---------------TPNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~---p---~~~v~W~~~~~~~---------------~~~~~~~~~~~--~~~~~l~i~  126 (325)
                      ..|..+.+.+|++|.|+|.+...   +   ...+.|++.....               ....++.+...  .+..+|.|.
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   84 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLK   84 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEEC
Confidence            44677889999999999998631   1   1234677642110               11234444332  345679999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy1095         127 EVTLEDAGLYTIKVENN  143 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~~~  143 (325)
                      +++.+|+|.|.|.+...
T Consensus        85 ~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             SCCGGGCEEEEEEEECC
T ss_pred             CCChhHCEEEEEEEEeC
Confidence            99999999999999654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.25  E-value=1.8e-06  Score=55.63  Aligned_cols=77  Identities=18%  Similarity=0.132  Sum_probs=52.7

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE-EEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTIKVENN  143 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  143 (325)
                      .|.+...|... |..|++|+|.|... .....+.++|++......... ..........+.|.+++..|+|.|.|.....
T Consensus         2 KPsLsa~P~~~-V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHPGPL-VKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeCCCc-cCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            57888888654 88999999999965 345678888877532111001 0111122356999999999999999987543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=3.2e-06  Score=55.79  Aligned_cols=76  Identities=17%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe---c-------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI---K-------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~---~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +..+....+.+|+.|+|.|.......  ..+.|++.  +...   .       .....++.....+    ....|.|.++
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~----~~~~L~I~~~   78 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVG--TNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSG----TDFTLTINNV   78 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEESSC
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCC--CceEEEeccCCcccEEEEEeccccccccCCCeeecCCC----Ceeeeeechh
Confidence            34445567889999999998754433  46899972  2211   1       0011111111222    3478999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|++.|.|.+..
T Consensus        79 ~~~DsA~YyCa~~~   92 (107)
T d1mexl1          79 QSEDLAEYFCQQYN   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             heecceeEEEeECC
Confidence            99999999997643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=1.5e-06  Score=57.37  Aligned_cols=74  Identities=22%  Similarity=0.346  Sum_probs=48.2

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----------c--CCCCceEEEecCCcceeEEEEEe
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----------L--DSDMKPEVQVDSKENLVIARLKI  232 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----------~--~~~~~~~~~~~~~~~~~~~~l~i  232 (325)
                      +...+....+.+|+.|+|.|.......  ..+.|++.  +..+.          .  ..++...  ..+    ....|.|
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~--~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~--~~~----~~~~L~I   75 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDIN--NFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGS--GSG----TDYSLTI   75 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCT--TCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCE--EET----TEEEEEC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcC--CCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEE--ccC----CEEEEEE
Confidence            344556677889999999998765443  56899972  22110          0  1111111  111    3478999


Q ss_pred             CCCCCCCCeEEEEEEE
Q psy1095         233 PHVYPEDEGEFTCRVA  248 (325)
Q Consensus       233 ~~~~~~d~G~Y~C~~~  248 (325)
                      .+++.+|+|.|.|.+.
T Consensus        76 ~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          76 SNLEPEDIATYFCQHH   91 (107)
T ss_dssp             SCCCSCCCSEEEEEEC
T ss_pred             eEeeecCCCcEEeeeC
Confidence            9999999999999754

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.24  E-value=4.4e-06  Score=56.56  Aligned_cols=76  Identities=18%  Similarity=0.282  Sum_probs=47.4

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec-------------cCC--CCceEEEecCCcceeEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK-------------LDS--DMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      .+....+|+.++|.|.+++.......+.|++.  ++.+.             ...  ..++....+.  ......|.|.+
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~--~~~~~~L~i~~   86 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP--ETSTSTLTIHN   86 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET--TTTEEEEEECS
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeec--cccceeecccc
Confidence            34567789999999999876533357899972  21110             000  1111111111  11346799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|+|.|.|.+..
T Consensus        87 l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          87 VEKQDIATYYCALWE  101 (123)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccccCcEEEEeeeC
Confidence            999999999998754

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.24  E-value=3.1e-06  Score=56.34  Aligned_cols=75  Identities=17%  Similarity=0.337  Sum_probs=47.7

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-------cCCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-------LDSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      ....+.+|+.++|.|...+.......+.|++.  +..   +.       .....+.....++    ....|.|.+++.+|
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~~~~~D   83 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSG----TSATLGITGLQTGD   83 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET----TEEEEEESSCCGGG
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCC----CEeeeEEeeecccc
Confidence            45778899999999987653322256999972  111   11       0111111211222    34789999999999


Q ss_pred             CeEEEEEEEeC
Q psy1095         240 EGEFTCRVANE  250 (325)
Q Consensus       240 ~G~Y~C~~~~~  250 (325)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (111)
T d1rzfl1          84 EADYYCGTWDS   94 (111)
T ss_dssp             CSEEEEEEEET
T ss_pred             CcceEEeecCC
Confidence            99999987643

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.24  E-value=2.6e-06  Score=56.81  Aligned_cols=77  Identities=13%  Similarity=0.207  Sum_probs=48.1

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec--c---CCC-----CceEEEecCCcceeEEEEEeCCCC
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK--L---DSD-----MKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~--~---~~~-----~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ..+....+.+|+.++|.|.......  ..+.|++.  +....  .   ...     .+.....  ........|.|.+++
T Consensus         5 Q~p~s~~~~~G~svtl~C~~s~~~~--~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~~~   80 (111)
T d1bd2d1           5 QNSPSLSVQEGRISILNCDYTNSMF--DYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFL--NKSAKHLSLHIVPSQ   80 (111)
T ss_dssp             CCCSEEEEETTSCEEEEEEECCTTC--CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE--ETTTTEEEEEESSCC
T ss_pred             ccCCEEEEcCCCCEEEEEEeCCCCC--CeEEEEEECCCCcceeeeeeeceeccccCCcceEEE--EccCCEEEEEECCCc
Confidence            3445667889999999998765444  56889872  22110  0   000     0011111  111246899999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          81 PGDSAVYFCAAME   93 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             ccccEEEEeeccC
Confidence            9999999998764

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.24  E-value=1.8e-06  Score=58.04  Aligned_cols=83  Identities=12%  Similarity=0.222  Sum_probs=49.5

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----c-C-CC---CceEEEecCCcceeEEEEEeCCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----L-D-SD---MKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----~-~-~~---~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ...+....+.+|++|+|.|........ ..+.|++.  +..+.    . . ..   .................|.|.+++
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~-~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSS-YFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSS-CEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCC-CCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            344456778999999999987543221 56889982  21110    0 0 00   000001111112245789999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy1095         237 PEDEGEFTCRVANEL  251 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~  251 (325)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          82 IEDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGGCEEEEEEEECCC
T ss_pred             ccccccccceeecCC
Confidence            999999999886543

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.5e-06  Score=54.39  Aligned_cols=81  Identities=19%  Similarity=0.266  Sum_probs=53.2

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCC--CCeEEEEEEEeCCCcE
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE--DEGEFTCRVANELGEV  254 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--d~G~Y~C~~~~~~~~~  254 (325)
                      .....++|.|.+.++.+.+..|.|.+++..+.......... ..+..+...+.|.|..-...  ....|+|.+.+..+..
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~-~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSV-LRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK   97 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCE-EETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEE-ccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCE
Confidence            34678999999999887779999999887665432211111 23335556678888765543  2348999999987665


Q ss_pred             EeEE
Q psy1095         255 VTSA  258 (325)
Q Consensus       255 ~~~~  258 (325)
                      ...+
T Consensus        98 ~~~v  101 (105)
T d1dn0b2          98 EKNV  101 (105)
T ss_dssp             EEEE
T ss_pred             EeEE
Confidence            5443

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.1e-06  Score=58.13  Aligned_cols=76  Identities=12%  Similarity=0.165  Sum_probs=50.3

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEE-ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ-VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      .+..++|.|.+.++.+.+..|.|.++|..+........... ..+..+...+.|.|..-.......|+|.+.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            46679999999998776689999999988754311111000 12234455677888765544466899999986543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.22  E-value=7e-06  Score=55.54  Aligned_cols=74  Identities=20%  Similarity=0.336  Sum_probs=51.9

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC-----------------CCCCcEEEEec--CCeEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA-----------------TPNARVTIREK--EDLRFLE  124 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~-----------------~~~~~~~~~~~--~~~~~l~  124 (325)
                      +.+++..++..+|++++|.|.+.+..  ...+.||+.  ++.+                 ....++.+...  .....|.
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            34445567788999999999998743  446899973  2110                 01235665542  3456799


Q ss_pred             EccCCCCCCeEEEEEEE
Q psy1095         125 ISEVTLEDAGLYTIKVE  141 (325)
Q Consensus       125 i~~~~~~d~G~Y~C~~~  141 (325)
                      |.+++.+|+|.|.|...
T Consensus        84 i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          84 IHNVEKQDIATYYCALW  100 (123)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccccccCcEEEEeee
Confidence            99999999999999764

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.9e-06  Score=57.28  Aligned_cols=72  Identities=19%  Similarity=0.175  Sum_probs=47.3

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCC---eeEEeeCCe--eC-------------CCC--CcEEEEecCCeEEEEEccCCC
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAP---WTSWSKDGK--PA-------------TPN--ARVTIREKEDLRFLEISEVTL  130 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~---~v~W~~~~~--~~-------------~~~--~~~~~~~~~~~~~l~i~~~~~  130 (325)
                      +|..+.+.+|++|+|.|.......+   .+.|||...  ..             ...  ........+....|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            3566678899999999998543322   488998431  10             000  011112234467899999999


Q ss_pred             CCCeEEEEEEEe
Q psy1095         131 EDAGLYTIKVEN  142 (325)
Q Consensus       131 ~d~G~Y~C~~~~  142 (325)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998753

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.6e-06  Score=58.16  Aligned_cols=69  Identities=17%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             ceEecCCCeEEEEEEEEe--cCCCeeEEeeCC--ee---C---CC---------CCcEEEEe--cCCeEEEEEccCCCCC
Q psy1095          74 NKICDLGDTVRFQCSVTG--QPAPWTSWSKDG--KP---A---TP---------NARVTIRE--KEDLRFLEISEVTLED  132 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~--~~---~---~~---------~~~~~~~~--~~~~~~l~i~~~~~~d  132 (325)
                      ...+.+|++|+|.|...+  .....+.|+|..  ..   +   ..         ..++.+..  ..+..+|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            356789999999998754  344568899732  11   1   00         12454443  3345779999999999


Q ss_pred             CeEEEEEEEe
Q psy1095         133 AGLYTIKVEN  142 (325)
Q Consensus       133 ~G~Y~C~~~~  142 (325)
                      +|.|.|.+..
T Consensus        88 sg~Y~Cav~~   97 (113)
T d1smoa_          88 SGLYQCVIYQ   97 (113)
T ss_dssp             CEEEEEEECC
T ss_pred             CceEEEEEEC
Confidence            9999998754

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=9.9e-07  Score=57.70  Aligned_cols=73  Identities=22%  Similarity=0.372  Sum_probs=50.1

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ..+.++|.|.+.++.+.+..|.|.++|..+........ ....++.+...+.|.|..-.......|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~-~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQP-IMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCC-EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeee-ecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35678999999997666689999999987653222111 12334455666788886554445668999999864

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.2e-06  Score=57.54  Aligned_cols=73  Identities=19%  Similarity=0.327  Sum_probs=50.1

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .++.++|.|.+.++.+....|.|+++|........... ....+..+...+.|.|..-.......|+|.+.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~-~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP-VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCC-EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcce-EECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999998776689999999987553211111 12333445566778887654444558999999864

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.21  E-value=1.5e-06  Score=57.00  Aligned_cols=78  Identities=14%  Similarity=0.280  Sum_probs=49.6

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc-------CCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL-------DSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+++|+++.|.|.++|+......+.|.|.  |+.+      ..       .+..+.++....+.......|.|.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            45678899999999999987654467888872  2211      11       111111111221222245679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (117)
T d1jpth1          88 AEDTAVYYCARDT  100 (117)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCceEEEEeecC
Confidence            9999999996543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.21  E-value=1.1e-06  Score=59.16  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=47.7

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEE---ec-cC-CCCc------eEEEecCCcceeEEEEEeCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRL---IK-LD-SDMK------PEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~---~~-~~-~~~~------~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ...+....+.+|+.++|.|.......  ..+.|++  .+..   +. .. ....      ......  .......|.|.+
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~--~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~   79 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSAT--PYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFS--KSNSSFHLRKAS   79 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSC--CEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECB--TTTTBCCEEESS
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCC--CCEEEEEECCCCceeeeeeeccceeccccCcceeEEEe--CcCCEEEEeccc
Confidence            33344577899999999999875444  5788987  2221   11 00 0000      000000  011335799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|+|.|.|.+..
T Consensus        80 ~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          80 VHWSDSAVYFCAVSG   94 (115)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccccceecccccC
Confidence            999999999998753

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.21  E-value=6.5e-06  Score=54.02  Aligned_cols=74  Identities=14%  Similarity=0.231  Sum_probs=46.1

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EEe---c-------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RLI---K-------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +..+....+.+|++++|.|..... .  ..+.|++..  ...   .       ......+.....+    ....|.|.++
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~-~--~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~----~~~~L~I~~~   76 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSS-V--NYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSG----TSYSLTISSM   76 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSC-C--SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSC
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCC-C--CccEEEEeeccCceEEEEecccccCCCcCceEEEecCC----CEEEEEeccc
Confidence            344556678899999999976432 2  457899731  111   0       0111111111112    4578999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         236 YPEDEGEFTCRVA  248 (325)
Q Consensus       236 ~~~d~G~Y~C~~~  248 (325)
                      ..+|+|.|.|...
T Consensus        77 ~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          77 ETEDAATYYCQQW   89 (104)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCCeEEEEec
Confidence            9999999999653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.21  E-value=9.1e-07  Score=58.04  Aligned_cols=73  Identities=18%  Similarity=0.320  Sum_probs=49.5

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .++.++|.|.+.++.+.+..|.|.++|............ ...++.+...+.|.|..-.......|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~-~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPV-LDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCE-ECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccce-eCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            467899999999987766899999999765432221111 1233345566778886554444568999999864

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=5.6e-06  Score=52.70  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=46.8

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +..++|.|.+.|+.|.+..+.|.++|..+....  .......+..+...+.|.+..   .+...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~--~~~~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN--CSTGPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE--EEEEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccC--ccceecCCCCEeEEEEEEECC---CCCCEEEEEEEeCC
Confidence            457899999999877778999999998875432  111122233444556677653   45568999998864

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.6e-06  Score=57.78  Aligned_cols=68  Identities=12%  Similarity=0.136  Sum_probs=41.6

Q ss_pred             eEecCCCeEEEEEEEEecCC---CeeEEe--eCCeeC----------C----CCCcEEEEecCCeEEEEEccCCCCCCeE
Q psy1095          75 KICDLGDTVRFQCSVTGQPA---PWTSWS--KDGKPA----------T----PNARVTIREKEDLRFLEISEVTLEDAGL  135 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p~---~~v~W~--~~~~~~----------~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~  135 (325)
                      +.+..|++|+|+|.+...+.   ..+.|+  ++....          .    +.-+.+.....+..+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            45778999999999864322   233443  432211          0    0011111222334679999999999999


Q ss_pred             EEEEEEe
Q psy1095         136 YTIKVEN  142 (325)
Q Consensus       136 Y~C~~~~  142 (325)
                      |.|.+..
T Consensus        84 Y~C~V~~   90 (110)
T d1ncna_          84 YQCIIHH   90 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999853

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.1e-06  Score=53.92  Aligned_cols=71  Identities=18%  Similarity=0.349  Sum_probs=47.6

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .+..++|.|.+.++.+.+..++|.++|..+..+..........+..+...+.|.+..   .+...|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHEG   84 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEECc
Confidence            356799999999998877899999999988754322222222233344445565543   34457999999854

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.20  E-value=3.5e-06  Score=56.89  Aligned_cols=81  Identities=19%  Similarity=0.279  Sum_probs=50.0

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe---cc-----CCC--CceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI---KL-----DSD--MKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~---~~-----~~~--~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      ...+....+.+|+.++|.|..++.......+.|++.  |+.+   ..     ...  .++....+  .......|.|.++
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~--~~~~~~~L~i~~~   82 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID--IAKNLAVLKILAP   82 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE--GGGTEEEEEESSC
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeecc--ccccceecccccc
Confidence            334446678899999999998765422256899972  2211   10     000  11111111  1113578999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy1095         236 YPEDEGEFTCRVANE  250 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~~  250 (325)
                      +.+|+|.|.|.....
T Consensus        83 ~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          83 SERDEGSYYCACDTL   97 (120)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             cccCCceeecCcccC
Confidence            999999999987543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.7e-06  Score=57.26  Aligned_cols=89  Identities=15%  Similarity=0.187  Sum_probs=54.8

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEE-ecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ-VDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      +|.+...+.......+..++|.|.+.++.+.+..|.|.++|..+........... ..+..+...+.|.|..-.......
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   84 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV   84 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCE
Confidence            3444443322222245689999999998776689999999987653321111100 112344566788887654444558


Q ss_pred             EEEEEEeCCC
Q psy1095         243 FTCRVANELG  252 (325)
Q Consensus       243 Y~C~~~~~~~  252 (325)
                      |+|.+.+...
T Consensus        85 ytC~V~H~~~   94 (107)
T d1c5cl2          85 YACEVTHQGL   94 (107)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEECCC
Confidence            9999998654

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=1e-06  Score=57.84  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=50.6

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ....+.|.|.+.++.+.+..|.|.++|..+......... ...+..+...+.|.|..-.......|+|.|.+...
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~-~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPT-MDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCE-ECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccE-eCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            356789999999988777899999999876432211111 12233455667788876555556689999998643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=5.3e-06  Score=54.72  Aligned_cols=76  Identities=17%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      ...+....+.+|+.|+|.|.......  ..+.|++.  +..   +.       .....++.....+    ....|.|.++
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~~~--~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~----~~~~L~I~~~   78 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQDIN--SYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSG----QDYSLTISSL   78 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEESSC
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCCCC--CccceeEeccccCeEEEEEeccccccCcCCceeecccC----CEEEcccccc
Confidence            34455667889999999998764443  56889872  211   11       0111112111222    3468999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|+|.|.|....
T Consensus        79 ~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          79 EYEDMGIYYCLQYD   92 (107)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CCcCCEEEEeeecc
Confidence            99999999997643

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=8.1e-06  Score=52.76  Aligned_cols=81  Identities=14%  Similarity=0.095  Sum_probs=49.2

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+. ..|..|++|+|.|...   .....+.++|++................+    ..+.+.|.+++..|+|.
T Consensus         3 pkPsLsa~P~-~~v~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~~~~~~~~~~~~----~~a~F~l~~v~~~~~G~   74 (98)
T d1ugna2           3 IKPTLSAQPS-PVVNSGGNVTLQCDSQ---VAFDGFILCKEGEDEHPQCLNSQPHARGS----SRAIFSVGPVSPSRRWW   74 (98)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECS---SCCSEEEEEEC------CEEEC------C----CEEEEEECCCCTTSCEE
T ss_pred             CCCEEEeeCC-CccCCCCcEEEEeCCC---CCCCEEEEEECCCcCCcEeeeeEEcCCCc----eEEEEEeeecccCCCeE
Confidence            3566666664 4588999999999863   22267888888765321110000000111    24689999999999999


Q ss_pred             EEEEEEeCC
Q psy1095         243 FTCRVANEL  251 (325)
Q Consensus       243 Y~C~~~~~~  251 (325)
                      |+|......
T Consensus        75 Y~C~y~~~~   83 (98)
T d1ugna2          75 YRCYAYDSN   83 (98)
T ss_dssp             EEEEEECTT
T ss_pred             EEEeeEcCC
Confidence            999876543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.5e-06  Score=59.15  Aligned_cols=79  Identities=15%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             cCeeEecCCcEEEEEEEEecC---C--CCCeeEEeeCCEEecc-------C------CCCceEEEecCCcceeEEEEEeC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVP---P--NDHDISWFRNNRLIKL-------D------SDMKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~---~--~~~~~~W~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      .++.+.+|+.|.|.|......   .  ....+.|++....-..       .      .....+....++.......|.|.
T Consensus         9 ~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (121)
T d2g5ra1           9 SSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIR   88 (121)
T ss_dssp             SEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             CEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEEC
Confidence            456788999999999985211   1  1245789875322110       0      01111111222222345789999


Q ss_pred             CCCCCCCeEEEEEEEeC
Q psy1095         234 HVYPEDEGEFTCRVANE  250 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~~  250 (325)
                      +++.+|+|.|.|.+...
T Consensus        89 ~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          89 DARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             CCChHHCEEEEEEEEeC
Confidence            99999999999999754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=1.4e-06  Score=58.61  Aligned_cols=79  Identities=19%  Similarity=0.297  Sum_probs=49.4

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-cCCCC-------ceEEEecCCcceeEEEEEeCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-LDSDM-------KPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-~~~~~-------~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ...+....+.+|+.|+|.|.......  ..+.|++.  +..   +. .....       ......  ........|.|.+
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~--~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~   79 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVP--PYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEF--KKSETSFHLTKPS   79 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSC--CEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEEC--BGGGTBCCEEESS
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCc--eeEEEEEccCCCcceeeeEEeecccccccCCCCEEEE--CCCCCEEEEeecc
Confidence            34445677899999999999875444  67999972  221   11 11100       011000  1111235799999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy1095         235 VYPEDEGEFTCRVANE  250 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~  250 (325)
                      ++.+|+|.|.|.+...
T Consensus        80 ~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          80 AHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCGGGCEEEEEEEESS
T ss_pred             ccccCCccceeeecCC
Confidence            9999999999998654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.19  E-value=2.9e-06  Score=56.66  Aligned_cols=73  Identities=12%  Similarity=0.234  Sum_probs=49.3

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC---------------CCCCcEEEE-ecCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA---------------TPNARVTIR-EKEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~---------------~~~~~~~~~-~~~~~~~l~i~~~~  129 (325)
                      +.+.|....+.+|++++|.|.... ....+.||+.  ++..               ....++... .......|.|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            456677788999999999998743 3557899973  2111               001122211 22334579999999


Q ss_pred             CCCCeEEEEEEE
Q psy1095         130 LEDAGLYTIKVE  141 (325)
Q Consensus       130 ~~d~G~Y~C~~~  141 (325)
                      .+|+|.|.|...
T Consensus        81 ~~DsavYyCA~~   92 (112)
T d2bnub1          81 PSQTSVYFCASS   92 (112)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HHHCEEEEEeec
Confidence            999999999765

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.7e-05  Score=47.18  Aligned_cols=60  Identities=15%  Similarity=0.326  Sum_probs=44.3

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      ..|..+.|+|.....+.....-+|.|+|..+.......           ....+.|..  .+++|+|.|....
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~-----------~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----------QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-----------SEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC-----------CceEEEEec--CCCCceEEEEEcC
Confidence            45888999999987655435689999999998654322           224677764  7899999999653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.18  E-value=3.6e-06  Score=56.09  Aligned_cols=74  Identities=18%  Similarity=0.326  Sum_probs=47.3

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EE---ec-c------CCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RL---IK-L------DSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~---~~-~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      ....+.+|+.|+|.|...+.......+.|++..  ..   +. .      ....+.....++    ....|.|.+++.+|
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D   83 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSG----TSASLAISGLESED   83 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEET----TEEEEEESSCCGGG
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCC----CeeeeEecccCccc
Confidence            356788999999999987554322578899731  11   11 0      001111111111    35789999999999


Q ss_pred             CeEEEEEEEe
Q psy1095         240 EGEFTCRVAN  249 (325)
Q Consensus       240 ~G~Y~C~~~~  249 (325)
                      ++.|.|.+..
T Consensus        84 sA~YyCA~~~   93 (114)
T d2rhea_          84 EADYYCAAWN   93 (114)
T ss_dssp             CEEEEEEEEE
T ss_pred             CceEEEeecC
Confidence            9999998764

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.16  E-value=2.7e-06  Score=56.84  Aligned_cols=74  Identities=14%  Similarity=0.237  Sum_probs=49.6

Q ss_pred             eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC--eeC---------------CCCCcEEEE-ecCCeEEEEEccCC
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPA---------------TPNARVTIR-EKEDLRFLEISEVT  129 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--~~~---------------~~~~~~~~~-~~~~~~~l~i~~~~  129 (325)
                      +.+.|....+.+|++++|.|... .....+.||+..  +..               ....++... .......|.|.+++
T Consensus         1 V~QsP~~~~~~~G~svtL~C~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   79 (112)
T d2cdeb1           1 IYQTPRYLVIGTGKKITLECSQT-MGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR   79 (112)
T ss_dssp             EEEECSEEEEETTCCBCCEEEET-TCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred             CEECCCEEEECCCCCEEEEEEEe-CCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence            35667778899999999999864 234578999842  111               001111111 12334579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         130 LEDAGLYTIKVEN  142 (325)
Q Consensus       130 ~~d~G~Y~C~~~~  142 (325)
                      .+|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCA~~~   92 (112)
T d2cdeb1          80 PSHTSQYLCASSE   92 (112)
T ss_dssp             TTTCSEEEEEEEC
T ss_pred             ccccccEEEEEec
Confidence            9999999998754

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.16  E-value=5.3e-06  Score=55.86  Aligned_cols=78  Identities=19%  Similarity=0.333  Sum_probs=49.4

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec-------------cCC--CCceEEEecCCcceeEEEE
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK-------------LDS--DMKPEVQVDSKENLVIARL  230 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~l  230 (325)
                      ...+....+.+|+.|+|.|...+...  ..+.|++.  +..+.             ...  ..+.....   .......|
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~---~~~~~~~L   79 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDTNI--HTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH---ASPTLSTL   79 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSSCC--SEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE---CSSSEEEE
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCCcc--cEEEEEEEcccccceeeeeccccccceeccccccccceeec---cccccccc
Confidence            34445567889999999998865544  67999982  22111             000  01111111   11134689


Q ss_pred             EeCCCCCCCCeEEEEEEEeC
Q psy1095         231 KIPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       231 ~i~~~~~~d~G~Y~C~~~~~  250 (325)
                      .|.+++.+|+|.|.|.+...
T Consensus        80 ~i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          80 TVTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             EECSCCGGGCEEEEEEEECS
T ss_pred             cccccccccCceEEEEEecC
Confidence            99999999999999998654

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=2.6e-06  Score=55.79  Aligned_cols=77  Identities=17%  Similarity=0.340  Sum_probs=48.9

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc------CCCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL------DSDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      ....+++|+.+.|.|.++|+......+.|+|.  |+.+      ..      .+..+.++....+.......|.|.+++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~   87 (117)
T d1c5db1           8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (117)
T ss_dssp             CCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence            45568899999999999987654467889872  2221      11      1111111112111122346799999999


Q ss_pred             CCCeEEEEEEE
Q psy1095         238 EDEGEFTCRVA  248 (325)
Q Consensus       238 ~d~G~Y~C~~~  248 (325)
                      +|++.|.|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1c5db1          88 EDTAIYFCTRE   98 (117)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEecc
Confidence            99999999643

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=5.4e-06  Score=54.12  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=47.6

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      ..++.++|.|.+.++.+.+..|.|.+++........  .. ...++.+...+.|.|..-... .+.|+|.+.+.....
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~--~~-~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF--PA-VLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASST   91 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC--CC-EEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEec--cc-ccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCE
Confidence            357789999999998877789999877643221111  11 123345566678888876653 568999999876544

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=8e-07  Score=59.64  Aligned_cols=77  Identities=12%  Similarity=0.341  Sum_probs=45.1

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---eccC----CCCce----EEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IKLD----SDMKP----EVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~~~----~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      ..+.+|++++|.|...+.......+.|+|.  +..   +...    .....    +.............|.|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            456789999999987643211156889973  211   1110    00000    0111111122446899999999999


Q ss_pred             eEEEEEEEeC
Q psy1095         241 GEFTCRVANE  250 (325)
Q Consensus       241 G~Y~C~~~~~  250 (325)
                      |.|.|.+...
T Consensus        89 g~Y~Cav~~~   98 (113)
T d1smoa_          89 GLYQCVIYQP   98 (113)
T ss_dssp             EEEEEEECCT
T ss_pred             ceEEEEEECC
Confidence            9999988544

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.15  E-value=2.8e-06  Score=56.52  Aligned_cols=74  Identities=19%  Similarity=0.437  Sum_probs=46.8

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ecc-------CCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IKL-------DSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      .++.+.+|+.++|.|........ ..+.|++.  +..   +..       .........    .......|.|.+++.+|
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~-~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~~~~~D   80 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGN-EYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIIT----EDRKSSTLILPHATLRD   80 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTT-EEEEEEEECTTSCCEEEEEESSSCEECSSCEEEEC----TTCSEEEEEESSCCGGG
T ss_pred             CEEEECCCCCEEEEEEEcCCCCC-CeEEEEEECCCCccEEeeeeeceecccccceeeec----ccCCeeeehhcccccCC
Confidence            35678899999999987543321 45889972  221   110       111111111    11256789999999999


Q ss_pred             CeEEEEEEEeC
Q psy1095         240 EGEFTCRVANE  250 (325)
Q Consensus       240 ~G~Y~C~~~~~  250 (325)
                      +|.|.|.+...
T Consensus        81 sa~YyCa~~~~   91 (110)
T d2esvd1          81 TAVYYCIVVRS   91 (110)
T ss_dssp             CEEEEEEEEES
T ss_pred             ceEEEEEEeCC
Confidence            99999987643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.14  E-value=3.4e-06  Score=55.30  Aligned_cols=71  Identities=17%  Similarity=0.395  Sum_probs=45.5

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec---c-------CCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK---L-------DSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      ...+.+|+.|+|.|.......  ..+.|++.  +..+.   .       ..........+.    ....|.|.+++.+|+
T Consensus         7 sl~~~~G~svtl~C~~~~~~~--~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l~~~Ds   80 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPN--QYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG----TTVTLTISGVQAEDE   80 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGG--SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEETTCCGGGC
T ss_pred             eEEECCCCCEEEEEEeCCCCC--CCEEEEEccCCCceEEEeeeecccccccCCcEEECCCC----CccCceEcCcchhHC
Confidence            567889999999998754433  46889972  21111   0       001111111111    457899999999999


Q ss_pred             eEEEEEEEe
Q psy1095         241 GEFTCRVAN  249 (325)
Q Consensus       241 G~Y~C~~~~  249 (325)
                      |.|.|.+..
T Consensus        81 a~YyCA~~~   89 (103)
T d8faba1          81 ADYYCQAWD   89 (103)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEeeecC
Confidence            999997654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.14  E-value=1.8e-06  Score=58.02  Aligned_cols=77  Identities=18%  Similarity=0.338  Sum_probs=47.6

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC-----CEEec----cCC-----------CCceEEEecCCcceeEEE
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN-----NRLIK----LDS-----------DMKPEVQVDSKENLVIAR  229 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-----~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~  229 (325)
                      .+....+.+|++|+|.|.+.+.... ..+.|++.     ...+.    ...           ..+......  .......
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~-~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~   80 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKL-TSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILES--SDSRRPF   80 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCS-SEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEES--TTSSSCE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCC-CceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEe--CCCCeEE
Confidence            3456678899999999998754432 57899973     22110    000           001110011  1113457


Q ss_pred             EEeCCCCCCCCeEEEEEEEe
Q psy1095         230 LKIPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       230 l~i~~~~~~d~G~Y~C~~~~  249 (325)
                      |.|.+++.+|+|.|.|.+..
T Consensus        81 L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          81 LSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EEECSCCGGGCEEEEEEEEC
T ss_pred             EeecccCCCCCcEEEEeEcC
Confidence            99999999999999998753

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.14  E-value=3.7e-06  Score=55.11  Aligned_cols=78  Identities=14%  Similarity=0.278  Sum_probs=49.9

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc------CCCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL------DSDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      ....+.+|+.+.|.|.++|+.-....+.|.+.  |+.+      ..      .+..+.+++...+.......|.|++++.
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_           8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence            34567889999999999987765567889873  2221      11      1111111112111222446799999999


Q ss_pred             CCCeEEEEEEEe
Q psy1095         238 EDEGEFTCRVAN  249 (325)
Q Consensus       238 ~d~G~Y~C~~~~  249 (325)
                      +|++.|.|.-..
T Consensus        88 eDTAvYYCAr~~   99 (116)
T d1a2yb_          88 DDTARYYCARER   99 (116)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceEEEEEEeC
Confidence            999999997543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.14  E-value=4.9e-06  Score=54.94  Aligned_cols=78  Identities=15%  Similarity=0.270  Sum_probs=49.3

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc------CCCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL------DSDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      ....+.+|+.+.|.|.++|+......+.|+|.  |+.+      ..      .+..+.++....+.......|.|.+++.
T Consensus         7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            34567899999999999987654467889873  2211      11      1111111111111122346899999999


Q ss_pred             CCCeEEEEEEEe
Q psy1095         238 EDEGEFTCRVAN  249 (325)
Q Consensus       238 ~d~G~Y~C~~~~  249 (325)
                      +|++.|.|....
T Consensus        87 eDtA~YYCAr~~   98 (119)
T d1kxvc_          87 DDTAMYYCKPSL   98 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCcceEeeeecc
Confidence            999999997654

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.13  E-value=2.4e-06  Score=56.06  Aligned_cols=77  Identities=17%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCC-------CCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      .....+++|+.+.|.|.++|+......+.|.|.  |+.+      ....       ..+.+++...+.......|.|.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L   86 (118)
T d1nlbh1           7 SGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeec
Confidence            345567899999999999987644366889872  2211      1111       111111111112224467999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         236 YPEDEGEFTCRV  247 (325)
Q Consensus       236 ~~~d~G~Y~C~~  247 (325)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (118)
T d1nlbh1          87 KNEDTATYFCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEee
Confidence            999999999953

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.13  E-value=5.4e-06  Score=54.50  Aligned_cols=80  Identities=16%  Similarity=0.233  Sum_probs=50.7

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccC-------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLD-------SDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+++|+.+.|.|.++|+......+.|.|  .|+.+      ...       +..+.++....+.......|.|++++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence            4556889999999999998765435688886  23221      111       11111111222222345679999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy1095         237 PEDEGEFTCRVANEL  251 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~  251 (325)
                      .+|++.|.|......
T Consensus        88 ~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          88 SEDTALYYCARLHYY  102 (118)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             CCcceEEEeeEecCC
Confidence            999999999865543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=5.1e-06  Score=54.86  Aligned_cols=71  Identities=20%  Similarity=0.406  Sum_probs=49.6

Q ss_pred             CceEecCCCeEEEEEEEEec--CCCeeEEeeC--Cee----C-C--C--------CCcEEEEec--CCeEEEEEccCCCC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQ--PAPWTSWSKD--GKP----A-T--P--------NARVTIREK--EDLRFLEISEVTLE  131 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~--~~~----~-~--~--------~~~~~~~~~--~~~~~l~i~~~~~~  131 (325)
                      +...+.+|++|+|.|...+.  ....+.|+|.  ++.    + .  .        ..++.+..+  .+..+|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            34568899999999998653  4556789984  221    1 0  0        124555443  44677999999999


Q ss_pred             CCeEEEEEEEeC
Q psy1095         132 DAGLYTIKVENN  143 (325)
Q Consensus       132 d~G~Y~C~~~~~  143 (325)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCa~~~~   94 (110)
T d1u9ka_          83 DSGLYRCVIYHP   94 (110)
T ss_dssp             GCEEEEEEEECT
T ss_pred             CCEEEEEEEeCC
Confidence            999999987543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.7e-05  Score=50.68  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=46.7

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCC--CcEEEEec-CC-eEEEEEccCCCCCCeEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPN--ARVTIREK-ED-LRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~--~~~~~~~~-~~-~~~l~i~~~~~~d~G~Y~  137 (325)
                      .||.+.+..    -..++.++|.|.+.| +|. ..++|++||+.+...  .......+ +. -.......+...+...|+
T Consensus         3 vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt   78 (94)
T d1de4a1           3 VPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYT   78 (94)
T ss_dssp             BCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred             CCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence            466665421    224677999999999 464 489999999987532  11122222 22 222223344556667899


Q ss_pred             EEEEeCC
Q psy1095         138 IKVENNY  144 (325)
Q Consensus       138 C~~~~~~  144 (325)
                      |.+.+..
T Consensus        79 C~V~H~s   85 (94)
T d1de4a1          79 CQVEHPG   85 (94)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.12  E-value=1.4e-05  Score=53.20  Aligned_cols=77  Identities=17%  Similarity=0.276  Sum_probs=46.9

Q ss_pred             eecCcCeeEecCCcEEEEEEEEec----CCCCCeeEEeeC--CEEec----------cCCCCceEEEecCCcceeEEEEE
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVV----PPNDHDISWFRN--NRLIK----------LDSDMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~----~~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~  231 (325)
                      .+.+....+.+|+.++|.|..++.    ......+.|++.  +..+.          ...........++    ....|.
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~----~~~~L~   80 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG----TDFTLT   80 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEE
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCC----CeEeEE
Confidence            344556778899999999987532    111134889973  22110          0111111111222    346899


Q ss_pred             eCCCCCCCCeEEEEEEE
Q psy1095         232 IPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       232 i~~~~~~d~G~Y~C~~~  248 (325)
                      |.+++.+|+|.|.|.+.
T Consensus        81 I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          81 ITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             ESSCCGGGCEEEEEEEC
T ss_pred             ecccccCCCeEEEeccc
Confidence            99999999999999754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.6e-06  Score=57.23  Aligned_cols=68  Identities=15%  Similarity=0.184  Sum_probs=46.7

Q ss_pred             eEecCCCeEEEEEEEEecC----CCeeEEeeCCeeCCC------------CCcEEEEecCCeEEEEEccCCCCCCeEEEE
Q psy1095          75 KICDLGDTVRFQCSVTGQP----APWTSWSKDGKPATP------------NARVTIREKEDLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p----~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      +++..|++++|.|......    ...+.|.+++..+..            ..+..... .+..+|.|.+++.+|+|.|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEEEE
Confidence            4678899999999875322    135678777654311            12333322 334689999999999999999


Q ss_pred             EEEeC
Q psy1095         139 KVENN  143 (325)
Q Consensus       139 ~~~~~  143 (325)
                      .+.+.
T Consensus        83 ~V~~~   87 (105)
T d1dr9a1          83 VVLKY   87 (105)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.12  E-value=4.6e-06  Score=55.09  Aligned_cols=73  Identities=15%  Similarity=0.352  Sum_probs=46.4

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-------cCCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-------LDSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      ....+.+|++|+|.|.......  ..+.|++.  +..   +.       ............+    ....|.|.+++.+|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~--~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l~~~D   81 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGS--RSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSG----NMATLTISRVEAGD   81 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGG--SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEESSCCGGG
T ss_pred             CeEEECCCCCEEEEEEcCCCCC--cceeeeeccccceeEEEEEccccCCCceeeeEeeecCC----CccceEEeeeccCC
Confidence            3567889999999998643332  56889972  221   10       0111111111222    45689999999999


Q ss_pred             CeEEEEEEEeC
Q psy1095         240 EGEFTCRVANE  250 (325)
Q Consensus       240 ~G~Y~C~~~~~  250 (325)
                      +|.|.|.+...
T Consensus        82 savYyCA~~~~   92 (109)
T d1w72l1          82 EADYYCQVWDS   92 (109)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEecCC
Confidence            99999987654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.6e-05  Score=50.93  Aligned_cols=78  Identities=17%  Similarity=0.353  Sum_probs=49.2

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEEEEecCC-e-EEEEEccCCCCCCeEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVTIREKED-L-RFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~-~-~~l~i~~~~~~d~G~Y~C~  139 (325)
                      .||.+.+...   ...|+.++|.|.+.| +|. ..|+|+++|..+...........++ . .......+...+...|+|.
T Consensus         2 ~PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~   78 (94)
T d1t7va1           2 DPPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCH   78 (94)
T ss_dssp             BCCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEE
T ss_pred             cCCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEE
Confidence            4677665332   235789999999999 454 4789999999876543333322222 1 2222333455566789999


Q ss_pred             EEeCC
Q psy1095         140 VENNY  144 (325)
Q Consensus       140 ~~~~~  144 (325)
                      +.+..
T Consensus        79 V~H~s   83 (94)
T d1t7va1          79 VQHSS   83 (94)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            98754

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.12  E-value=4.8e-06  Score=55.10  Aligned_cols=76  Identities=16%  Similarity=0.293  Sum_probs=47.4

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CE---Eecc-------CCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NR---LIKL-------DSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~---~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      ++.+....+.+|+.++|.|........ ..+.|++.  +.   .+..       ...........+    ....|.|.++
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~-~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~----~~~~L~I~~~   79 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGN-NKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG----TDFTLTISRL   79 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGG-GCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEESSC
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCC-ccceeEeccccCCCEEEEeeecccccCCccceeeecCC----CEEEEEehHh
Confidence            344556678899999999987543221 45889873  22   1110       011111111122    3478999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         236 YPEDEGEFTCRVA  248 (325)
Q Consensus       236 ~~~d~G~Y~C~~~  248 (325)
                      +.+|+|.|.|.+.
T Consensus        80 ~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          80 EPEDFAVYYCQQY   92 (108)
T ss_dssp             CGGGCSEEEEEEC
T ss_pred             eecccEEEeeecC
Confidence            9999999999764

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.12  E-value=3.5e-06  Score=55.39  Aligned_cols=79  Identities=14%  Similarity=0.242  Sum_probs=49.6

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCC-------CCceEEEecCCcceeEEEEEeCC
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ++....+++|+.+.|.|.++|+......+.|+|.  |+.+      ....       ..+.+++...+.......|.|.+
T Consensus         5 esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~s   84 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccc
Confidence            3445678899999999999987654467889873  2221      1111       11111111111112346799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         235 VYPEDEGEFTCRVA  248 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~  248 (325)
                      ++.+|++.|.|...
T Consensus        85 L~~eDtAvYYCAr~   98 (117)
T d1um5h1          85 LTSEDSAVYYCARS   98 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.12  E-value=3.4e-06  Score=56.51  Aligned_cols=75  Identities=19%  Similarity=0.324  Sum_probs=47.5

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----c--------CCCCceEEEecCCcceeEEEEEeCC
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----L--------DSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----~--------~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ..+....+.+|+.++|.|...+..   ..+.|++.  |..+.    .        ..+....  ..  .......|.|.+
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~~~---~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~--~~--~~~~~~~L~I~~   77 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSSVF---SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQ--FG--DARKDSSLHITA   77 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSSCC---SCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEE--EC--TTSSEEEEEESS
T ss_pred             eCCCeEEECCCCCEEEEEEECCCC---ceEEEEecCCCCceeeeeeeeecccceeecccccc--cc--cccceeeeeecC
Confidence            334556788999999999875432   56899972  22110    0        0111111  11  112457899999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy1095         235 VYPEDEGEFTCRVANE  250 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~~  250 (325)
                      ++.+|+|.|.|.+...
T Consensus        78 ~~~~Dsa~YyCa~~~~   93 (115)
T d1ogad1          78 AQPGDTGLYLCAGAGS   93 (115)
T ss_dssp             CCGGGCEEEEEEEECT
T ss_pred             CCccceeeEcccccCC
Confidence            9999999999987643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.12  E-value=2.1e-06  Score=55.34  Aligned_cols=70  Identities=14%  Similarity=0.195  Sum_probs=47.4

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .+..++|.|.+.++.|.+..+.|++++..+......... ...+..+...+.|.+..   ++...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~-~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDIL-PNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCE-ECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccE-eCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            355799999999988776899999998876543222211 22333445556777764   34457999998854

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.11  E-value=4.2e-06  Score=55.70  Aligned_cols=77  Identities=17%  Similarity=0.289  Sum_probs=47.6

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----------cCCCCceEEEecCCcceeEEEEEeCCCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----------LDSDMKPEVQVDSKENLVIARLKIPHVYPE  238 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  238 (325)
                      +....+.+|+.++|.|...+.......+.|++.  +..+.          .....+.....+  .......|.|.+++.+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSID--RSSNSASLTISGLKTE   84 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE--TTTTEEEEEECSCCGG
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeec--CCCCccccccccCCcc
Confidence            445778899999999998654322145889873  22111          000111111111  1114678999999999


Q ss_pred             CCeEEEEEEEe
Q psy1095         239 DEGEFTCRVAN  249 (325)
Q Consensus       239 d~G~Y~C~~~~  249 (325)
                      |+|.|.|....
T Consensus        85 Dsa~YyCA~~~   95 (111)
T d1cd0a_          85 DEADYYCQSYD   95 (111)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeecc
Confidence            99999997643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.11  E-value=9.2e-06  Score=54.01  Aligned_cols=75  Identities=17%  Similarity=0.274  Sum_probs=46.9

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecC---CCCCeeEEeeC--CEEec----------cCCCCceEEEecCCcceeEEEEEeC
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVP---PNDHDISWFRN--NRLIK----------LDSDMKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~---~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      ..+....+.+|++|+|.|..++..   .....+.|++.  |....          .....+......+    ....|.|.
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~----~~~~L~Is   81 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSG----TAFTLRIS   81 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECS----SEEEEEES
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCC----CEEEEEEC
Confidence            344566788999999999886532   11256889872  22111          1111112212222    45789999


Q ss_pred             CCCCCCCeEEEEEE
Q psy1095         234 HVYPEDEGEFTCRV  247 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~  247 (325)
                      +++.+|++.|.|..
T Consensus        82 ~~~~~DsAvYyCa~   95 (112)
T d1mjul1          82 RVEAEDVGVYYCLQ   95 (112)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             CccccCCceEEEEe
Confidence            99999999999953

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.11  E-value=1.1e-05  Score=53.48  Aligned_cols=78  Identities=14%  Similarity=0.140  Sum_probs=48.2

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecC-C-CCCeeEEeeC--CEEe----c------cCCCCceEEEecCCcceeEEEEEeC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVP-P-NDHDISWFRN--NRLI----K------LDSDMKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~-~-~~~~~~W~~~--~~~~----~------~~~~~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      +..+....+.+|+.|+|.|..+... . ....+.|++.  +...    .      .....++.....+    ....|.|.
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~----~~~~L~I~   80 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG----TDFTLNIH   80 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEES
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC----Cchhcccc
Confidence            4445567789999999999875421 1 1134889873  2211    0      0111122212222    35789999


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy1095         234 HVYPEDEGEFTCRVAN  249 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~  249 (325)
                      +++.+|+|.|.|.+..
T Consensus        81 ~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          81 PVEEEDAATYYCSHIR   96 (111)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             cccccCCceEEEEECC
Confidence            9999999999997643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.11  E-value=4e-06  Score=55.42  Aligned_cols=76  Identities=17%  Similarity=0.256  Sum_probs=47.7

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc------CCCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL------DSDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      ....+.+|+.+.|.|.++|+......+.|++.  |+.+      ..      .+..+.+++...+.......|.|.+++.
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1           8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (120)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc
Confidence            34568899999999999987654467889872  2221      11      1111111111111112345699999999


Q ss_pred             CCCeEEEEEE
Q psy1095         238 EDEGEFTCRV  247 (325)
Q Consensus       238 ~d~G~Y~C~~  247 (325)
                      +|++.|.|..
T Consensus        88 eDtA~YYCAr   97 (120)
T d1dn0b1          88 ADTAVYYCAR   97 (120)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccccEEEEEe
Confidence            9999999943

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=5e-06  Score=54.17  Aligned_cols=74  Identities=15%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      ..++.++|.|.+.++.+.+..|.|.+++...........   ..++.+...+.|.|..-... .|.|+|.+.+.....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~---~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV---LQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSST   91 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE---EETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee---cCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCe
Confidence            357789999999997776689999887754321111111   22334556678888765553 578999999875543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.11  E-value=3.9e-06  Score=55.06  Aligned_cols=78  Identities=15%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------cc-------CCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KL-------DSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+.+|+++.|.|.++|+......+.|.+  .|+.+      ..       .+..+.+++...+.......|.|.++
T Consensus         7 sG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L   86 (117)
T d1jnhb1           7 SGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSL   86 (117)
T ss_dssp             CCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccccc
Confidence            34456788999999999998765546788987  22211      11       11111111111111123467999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         236 YPEDEGEFTCRVA  248 (325)
Q Consensus       236 ~~~d~G~Y~C~~~  248 (325)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1jnhb1          87 TSEDSAVYSCSRG   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999653

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.11  E-value=1.5e-05  Score=51.72  Aligned_cols=77  Identities=16%  Similarity=0.384  Sum_probs=47.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcE--EEEecCC----eEEEEEccCCCCCCeE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARV--TIREKED----LRFLEISEVTLEDAGL  135 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~--~~~~~~~----~~~l~i~~~~~~d~G~  135 (325)
                      .+|.+.+.|... +..|+.++|.|.+.|+ | ...|+|++||..+......  .....++    ...|.+.   ..+...
T Consensus         4 v~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~   79 (101)
T d1fnga1           4 VAPEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDDF   79 (101)
T ss_dssp             BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTCC
T ss_pred             cCCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCCE
Confidence            467776544322 4567889999999984 5 4588999999887643111  1111122    1234443   344558


Q ss_pred             EEEEEEeCC
Q psy1095         136 YTIKVENNY  144 (325)
Q Consensus       136 Y~C~~~~~~  144 (325)
                      |+|.+.+..
T Consensus        80 ytC~V~H~s   88 (101)
T d1fnga1          80 YDCEVDHWG   88 (101)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999998764

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.11  E-value=6.2e-06  Score=53.01  Aligned_cols=66  Identities=17%  Similarity=0.416  Sum_probs=41.8

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec-cC-------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRN--NRL---IK-LD-------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC  245 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~-~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  245 (325)
                      |+.|+|.|.......  ..+.|++.  +..   +. ..       .++.....    .......|.|.+++.+|+|.|.|
T Consensus         1 G~~vtl~C~~~~~~~--~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~----~~~~~~sL~I~~~~~~Dsg~YyC   74 (94)
T d2gj6d1           1 GAIASLNCTYSDRGS--QSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLN----KASQYVSLLIRDSQPSDSATYLC   74 (94)
T ss_dssp             TSCEEEEEEECCTTC--CEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEE----TTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CccEEEEEEEccccC--CcEEEEEECCCcccccceeeeeeccCCCCcEEEEec----CCCCEEeEEeeccccCcCcccee
Confidence            789999998865444  67999972  211   11 00       11111101    11235789999999999999999


Q ss_pred             EEEeC
Q psy1095         246 RVANE  250 (325)
Q Consensus       246 ~~~~~  250 (325)
                      .+...
T Consensus        75 a~~~~   79 (94)
T d2gj6d1          75 AVTTD   79 (94)
T ss_dssp             EEESS
T ss_pred             eEecC
Confidence            87643

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.4e-06  Score=57.81  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEE----ecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ----VDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      +..++.++|.|.+.++.+.+..|.|+++|..+..+........    ..+..+...+.|.|..-.......|+|.|.+..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            4457889999999998776689999999998765432111101    112234455677776554444569999998854

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.10  E-value=3e-06  Score=55.69  Aligned_cols=77  Identities=14%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccCC-C------CceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLDS-D------MKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~~-~------~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+++|+.+.|.|.++|+......+.|.|  .|+.+      .... .      .+.+++...+.......|.|+++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL   86 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence            34556789999999999998775446788987  22221      1111 0      01111111111224467999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         236 YPEDEGEFTCRV  247 (325)
Q Consensus       236 ~~~d~G~Y~C~~  247 (325)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (118)
T d2jelh1          87 TSEDSAIYYCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceeeeEEE
Confidence            999999999954

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.10  E-value=3.9e-06  Score=55.86  Aligned_cols=78  Identities=18%  Similarity=0.358  Sum_probs=49.7

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE------eccCC-------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL------IKLDS-------DMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~------~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+.+|+.+.|.|.++|+......+.|.|.  ++.      +....       ..+.+++...+.......|.|.+++
T Consensus         7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~   86 (124)
T d1zvya1           7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   86 (124)
T ss_dssp             CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence            34567889999999999987765467889872  221      11111       1111111111122245679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        87 ~eDtAvYYCAr~~   99 (124)
T d1zvya1          87 SEDTAIYTCGATR   99 (124)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             CCcceEEEEeecc
Confidence            9999999997643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=1.1e-05  Score=53.30  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=46.5

Q ss_pred             CeeEecCCcEEEEEEEEecCC-CCCeeEEee--CCEEec----------cCCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPP-NDHDISWFR--NNRLIK----------LDSDMKPEVQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~-~~~~~~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      ...+.+|+.++|.|..++... ....+.|++  .+..+.          .....++.....+    ....|.|.+++.+|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~----~~~~L~I~~~~~~D   84 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG----NKAALTITGAQTED   84 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET----TEEEEEEESCCGGG
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc----cceeeecCCCCccc
Confidence            567889999999999864332 113488997  222211          0111122222222    35789999999999


Q ss_pred             CeEEEEEEEe
Q psy1095         240 EGEFTCRVAN  249 (325)
Q Consensus       240 ~G~Y~C~~~~  249 (325)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (110)
T d1oaql_          85 EAIYFCALWY   94 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             cEeEEEEccc
Confidence            9999998754

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.10  E-value=4.5e-06  Score=55.08  Aligned_cols=77  Identities=16%  Similarity=0.292  Sum_probs=49.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCC-------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+++|+.+.|.|.++|+......+.|.|.  |+.+      ....       ..+.+++...+.......|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~   87 (121)
T d2p49b1           8 GGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK   87 (121)
T ss_dssp             ECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc
Confidence            45568899999999999987655467889872  2211      1111       1111111222222244679999999


Q ss_pred             CCCCeEEEEEEE
Q psy1095         237 PEDEGEFTCRVA  248 (325)
Q Consensus       237 ~~d~G~Y~C~~~  248 (325)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d2p49b1          88 PEDTATYYCAAG   99 (121)
T ss_dssp             GGGCEEEEEEES
T ss_pred             ccceeEEeeecc
Confidence            999999999753

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.09  E-value=4.3e-06  Score=56.33  Aligned_cols=74  Identities=12%  Similarity=0.156  Sum_probs=50.0

Q ss_pred             eEecCCceEecCCCeEEEEEEEEec--CCCeeEEeeCC--ee---C-------------CCCCcEEEEe--cCCeEEEEE
Q psy1095          68 FYAVPHNKICDLGDTVRFQCSVTGQ--PAPWTSWSKDG--KP---A-------------TPNARVTIRE--KEDLRFLEI  125 (325)
Q Consensus        68 ~~~~~~~~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~--~~---~-------------~~~~~~~~~~--~~~~~~l~i  125 (325)
                      +.++|..+...+|++++|.|...+.  ....+.||+..  +.   +             ....++....  ......|.|
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I   83 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence            4445556777899999999987653  23468999832  11   1             0112444433  234577999


Q ss_pred             ccCCCCCCeEEEEEEE
Q psy1095         126 SEVTLEDAGLYTIKVE  141 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~  141 (325)
                      .+++.+|+|.|.|...
T Consensus        84 ~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          84 YSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             CSCCGGGCSEEEEEEC
T ss_pred             cccccccceeEEEEEc
Confidence            9999999999999764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.9e-06  Score=56.52  Aligned_cols=74  Identities=15%  Similarity=0.346  Sum_probs=42.6

Q ss_pred             eeEecCCcEEEEEEEEecCCCC-Ce--eEEeeCCEEe-c-----------cCCCCceEEEecCCcceeEEEEEeCCCCCC
Q psy1095         174 LRCCDGDSVTFECQVQVVPPND-HD--ISWFRNNRLI-K-----------LDSDMKPEVQVDSKENLVIARLKIPHVYPE  238 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~-~~--~~W~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  238 (325)
                      +.+..|++++|.|......... ..  +.|.++.... .           ...++........    ....|.|.+++.+
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~----~~~sL~I~~v~~~   79 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS----DSWTLRLHNLQIK   79 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET----TTTEEEECSCCGG
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccC----CeEEEEECCCChh
Confidence            4567899999999886433211 22  3344432211 0           0111111111111    2257999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy1095         239 DEGEFTCRVANEL  251 (325)
Q Consensus       239 d~G~Y~C~~~~~~  251 (325)
                      |+|.|.|.+....
T Consensus        80 D~G~Y~C~V~~~~   92 (110)
T d1ncna_          80 DKGLYQCIIHHKK   92 (110)
T ss_dssp             GCEEEEEEEEEEC
T ss_pred             HCEEEEEEEEecC
Confidence            9999999997543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.09  E-value=3.9e-06  Score=55.11  Aligned_cols=79  Identities=18%  Similarity=0.347  Sum_probs=49.0

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccCC-------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+.+|+.+.|.|.++|+......+.|++  .|+.+      ....       ..+.+++...+.......|.|++++
T Consensus         8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence            4556788999999999998764336688987  23221      1111       1111111111111234579999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy1095         237 PEDEGEFTCRVANE  250 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~  250 (325)
                      .+|++.|.|.....
T Consensus        88 ~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          88 SDDTAVYYCAVPDP  101 (117)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             cCcceEEEEeEcCC
Confidence            99999999986543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.08  E-value=6e-06  Score=54.16  Aligned_cols=79  Identities=14%  Similarity=0.194  Sum_probs=49.8

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCC------CCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDS------DMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      ....+++|+.+.|.|.++|+......+.|++.  |+.+      ....      ..+.++....+.......|.|++++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~   87 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc
Confidence            45567889999999999987765567889872  3221      1111      11111111111112356799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy1095         238 EDEGEFTCRVANE  250 (325)
Q Consensus       238 ~d~G~Y~C~~~~~  250 (325)
                      +|++.|.|.....
T Consensus        88 eDtAvYyCAr~~~  100 (116)
T d7fabh1          88 ADTAVYYCARNLI  100 (116)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccceEEEeeeecC
Confidence            9999999976443

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.08  E-value=3.7e-07  Score=60.17  Aligned_cols=75  Identities=15%  Similarity=0.242  Sum_probs=50.6

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      .+..+.|.|.+.++.+....|.|.++|..+......... ...+..+...+.|.|..-...+...|+|.+.+....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~-~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP-SKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC-BCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccc-cCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            366789999999977666899999999988644332211 122333444566666655545566899999987644

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.08  E-value=2e-05  Score=52.14  Aligned_cols=80  Identities=15%  Similarity=0.275  Sum_probs=47.6

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe---c-c-CCCCceEEEecCC-----cceeEEEEEeCC
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI---K-L-DSDMKPEVQVDSK-----ENLVIARLKIPH  234 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~---~-~-~~~~~~~~~~~~~-----~~~~~~~l~i~~  234 (325)
                      +...+....+.+|+.++|.|..... .  ..+.|++.  |...   . . .............     .......|.|.+
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~~-~--~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTNN-H--NNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILES   80 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSC-C--SEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESS
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECCC-c--CcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECC
Confidence            3444556678899999999987532 2  57999982  2211   0 0 0000000000000     011357899999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|+|.|.|.+..
T Consensus        81 ~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          81 ATPSQTSVYFCASGG   95 (110)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCHhhCEEEEEeeCC
Confidence            999999999998654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.08  E-value=4.8e-06  Score=54.71  Aligned_cols=76  Identities=13%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEec------c-------CCCC--ceEEEecCCcceeEEEEEe
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIK------L-------DSDM--KPEVQVDSKENLVIARLKI  232 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~------~-------~~~~--~~~~~~~~~~~~~~~~l~i  232 (325)
                      .+....+.+|+.+.|.|.++|+......+.|.+  .|+.+.      .       .+..  +...+.+  .......|.|
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D--~s~~~~~L~i   83 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAV--TSTTTAYMEL   83 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEE--TTTTEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcc--cCccEeEeee
Confidence            334566788999999999998764436788876  233221      0       1111  1121111  1123457999


Q ss_pred             CCCCCCCCeEEEEEE
Q psy1095         233 PHVYPEDEGEFTCRV  247 (325)
Q Consensus       233 ~~~~~~d~G~Y~C~~  247 (325)
                      .+++.+|++.|.|..
T Consensus        84 ~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          84 SSLTSEDSAVYYCTR   98 (117)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEec
Confidence            999999999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.08  E-value=5.6e-06  Score=54.59  Aligned_cols=78  Identities=14%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccC-------CCCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLD-------SDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      .....+++|+.+.|.|.++|+......+.|++.  |+.+      ...       +..+.++....+.......|.|.++
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL   86 (119)
T d1rz7h1           7 SGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSL   86 (119)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeecc
Confidence            345567889999999999987654367889872  2211      111       1111111111111224467999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         236 YPEDEGEFTCRVA  248 (325)
Q Consensus       236 ~~~d~G~Y~C~~~  248 (325)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (119)
T d1rz7h1          87 RSEDTAVYYCAAD   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccceEEEEeec
Confidence            9999999999654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=9.4e-07  Score=57.09  Aligned_cols=75  Identities=21%  Similarity=0.262  Sum_probs=51.4

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  141 (325)
                      .+|.+...|..+ |..|++|+|.|... .+...+.++|++.......+. .........+.|.+++..|+|.|.|...
T Consensus         3 PkP~Lsa~Ps~~-V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1           3 PKPTLWAEPGSV-ITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeECCCc-cCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc-cCCCCCEEEEEEEecCHHHCCeEEEEEe
Confidence            367888888755 78999999999964 455678888987532100000 0001123469999999999999999864

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.08  E-value=1.3e-05  Score=53.24  Aligned_cols=77  Identities=16%  Similarity=0.193  Sum_probs=47.4

Q ss_pred             ecCcCeeEecCCcEEEEEEEEecC--CCCCeeEEeeC--CEEec----------cCCCCceEEEecCCcceeEEEEEeCC
Q psy1095         169 NGLENLRCCDGDSVTFECQVQVVP--PNDHDISWFRN--NRLIK----------LDSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       169 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ..+....+.+|+.|+|.|......  .....+.|++.  +..+.          ............+    ....|.|.+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~----~~~~L~I~~   81 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR----TDFTLIIDP   81 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS----SEEEEEESS
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCC----CEEEEEEcc
Confidence            444556678899999999874321  11134899972  32111          0111111211222    457899999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|+|.|.|.+.+
T Consensus        82 ~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          82 VEADDVATYYCQQTN   96 (111)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cccccCccEEEeecC
Confidence            999999999997653

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.07  E-value=3.3e-06  Score=55.56  Aligned_cols=76  Identities=17%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEec------cCC-C------CceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIK------LDS-D------MKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~------~~~-~------~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+.+|+.++|.|.++|+......+.|++  .|+.+.      ... .      .+.+++...+.......|.|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~   87 (115)
T d1f3dh1           8 GPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLT   87 (115)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecC
Confidence            3456788999999999998654335688987  232221      111 0      010111111111133579999999


Q ss_pred             CCCCeEEEEEE
Q psy1095         237 PEDEGEFTCRV  247 (325)
Q Consensus       237 ~~d~G~Y~C~~  247 (325)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (115)
T d1f3dh1          88 FEDSAVYYCAN   98 (115)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCCcEEEEEec
Confidence            99999999964

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.07  E-value=5.9e-06  Score=55.14  Aligned_cols=81  Identities=20%  Similarity=0.326  Sum_probs=49.3

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----cCCCCc---eEEEecCCcceeEEEEEeCCCCCC
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----LDSDMK---PEVQVDSKENLVIARLKIPHVYPE  238 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~  238 (325)
                      ...+....+.+|+.++|.|..... .  ..+.|++.  +..+.    ......   ...............|.|.+++.+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTT-M--RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-C--SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             EECCCEEEEcCCCCEEEEEEEecC-C--ccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence            444556778899999999987532 2  57899982  21110    000000   000001112224568999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy1095         239 DEGEFTCRVANEL  251 (325)
Q Consensus       239 d~G~Y~C~~~~~~  251 (325)
                      |+|.|.|.+....
T Consensus        82 Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          82 DSGTYFCAAEASS   94 (113)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             HCEEEEEEecCCC
Confidence            9999999876543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=9.1e-06  Score=54.63  Aligned_cols=81  Identities=15%  Similarity=0.327  Sum_probs=47.0

Q ss_pred             cCeeEecCCcEEEEEEEEecC----CCCCeeEEeeCCE----Eec-c------CCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVP----PNDHDISWFRNNR----LIK-L------DSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~----~~~~~~~W~~~~~----~~~-~------~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ..+.+.+|+.|.|.|.+....    .....+.|++...    .+. .      ....................|.|.+++
T Consensus         8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   87 (118)
T d1qfoa_           8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLK   87 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred             CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCC
Confidence            456788999999999986321    1113456776321    110 0      111111111222222245679999999


Q ss_pred             CCCCeEEEEEEEeCCC
Q psy1095         237 PEDEGEFTCRVANELG  252 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~~~  252 (325)
                      .+|+|.|.|.+.....
T Consensus        88 ~~DsG~Y~C~v~~~~~  103 (118)
T d1qfoa_          88 PEDSGTYNFRFEISDS  103 (118)
T ss_dssp             GGGCEEEEEEEECC-C
T ss_pred             hhHCEEEEEEEEeCCC
Confidence            9999999999976543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.07  E-value=6e-06  Score=55.04  Aligned_cols=75  Identities=11%  Similarity=0.263  Sum_probs=46.7

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec----c----CCCCceEEEecCCcceeEEEEEeCCCCCCCCe
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK----L----DSDMKPEVQVDSKENLVIARLKIPHVYPEDEG  241 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~----~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  241 (325)
                      ....+.+|++|+|.|...+.... ..+.|++.  +..+.    .    ............  ......|.|.++..+|+|
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~-~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGT-DYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE--DRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTT-CCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECT--TSSEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEEeCCCcc-ccEEEEEECCCCCcceeeeecceeccccccceeecc--cCCeeEEEEeecccccce
Confidence            45678899999999987654432 45899982  22211    0    001111111111  124568999999999999


Q ss_pred             EEEEEEEe
Q psy1095         242 EFTCRVAN  249 (325)
Q Consensus       242 ~Y~C~~~~  249 (325)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99997654

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.07  E-value=8.2e-06  Score=53.63  Aligned_cols=78  Identities=13%  Similarity=0.255  Sum_probs=49.4

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccC-------CCCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLD-------SDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      .....+.+|+.+.|.|.++|+......+.|.|  .|+.+      ...       .....+.....+.......|.|.++
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L   86 (118)
T d1ct8b1           7 SGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccccc
Confidence            34567888999999999998775546788887  23221      111       1111111111112224468999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         236 YPEDEGEFTCRVA  248 (325)
Q Consensus       236 ~~~d~G~Y~C~~~  248 (325)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (118)
T d1ct8b1          87 TTEDSAIYYCARY   99 (118)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeee
Confidence            9999999999654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.06  E-value=4.1e-06  Score=55.49  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=48.6

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE------eccC-------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL------IKLD-------SDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~------~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+++|+.+.|.|.++|+.-....+.|+|.  |+.      +...       ...+.++....+.......|.|.+++
T Consensus         8 G~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~   87 (123)
T d1mqkh_           8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK   87 (123)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec
Confidence            44567899999999999987643356888872  221      1111       11111111111112234679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (123)
T d1mqkh_          88 SEDTAMYYCVRHE  100 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcccceeEEecC
Confidence            9999999997654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.8e-05  Score=50.81  Aligned_cols=73  Identities=14%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV  255 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  255 (325)
                      .++.++|.|.+.|+.|. +.+.|++++..+..... .......++.+...+.|.+..   .+...|+|.+.+..-...
T Consensus        15 s~~~~~L~C~~~g~~P~-~~V~W~~n~~~~~~~~~-~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~~   87 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPE-PHLSWLENGEELNAINT-TVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRVN   87 (95)
T ss_dssp             STTEEEEEEEEEEESSC-EEEEEEESSCEECCSEE-EEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCEE
T ss_pred             CCCEEEEEEEECcccCC-CEEEEecCCcEecccce-eeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCCc
Confidence            47789999999986544 79999999988754322 111112223455667777753   345799999998766544

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.06  E-value=7e-06  Score=54.91  Aligned_cols=78  Identities=13%  Similarity=0.235  Sum_probs=49.0

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccC-------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLD-------SDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+.+|+.+.|.|.++|+......+.|.|.  |+.+      ...       +..+.+++...+.......|.|.+++
T Consensus         8 G~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~   87 (135)
T d1ieha_           8 GGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLK   87 (135)
T ss_dssp             CCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeC
Confidence            44567899999999999987654467889872  2221      111       11111111111112234679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (135)
T d1ieha_          88 SEDTAVYYCAKYS  100 (135)
T ss_dssp             SSSCEEEEEEEBS
T ss_pred             cccceeeEEEEec
Confidence            9999999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.05  E-value=4.2e-06  Score=54.61  Aligned_cols=76  Identities=14%  Similarity=0.277  Sum_probs=47.6

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCC-------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+.+|+.+.|.|.++|+......+.|++.  |+.+      ....       ..+.+++...+.......|.|++++
T Consensus         8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~   87 (114)
T d1indh1           8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR   87 (114)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec
Confidence            45568899999999999987654466888872  2211      1111       1111111111111234579999999


Q ss_pred             CCCCeEEEEEE
Q psy1095         237 PEDEGEFTCRV  247 (325)
Q Consensus       237 ~~d~G~Y~C~~  247 (325)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCA~   98 (114)
T d1indh1          88 SEDTALYFCAS   98 (114)
T ss_dssp             GGGCEEEEEEC
T ss_pred             cCcccEEEECC
Confidence            99999999964

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.05  E-value=3.8e-06  Score=54.87  Aligned_cols=79  Identities=14%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccCC-------CCceEEEecCCcceeEEEEEeCC
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ++....+.+|+.+.|.|.++|+......+.|.|  .|+.+      ....       ..+.+++...+.......|.|.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            344567889999999999998765446788887  22221      1111       11111111111122446799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         235 VYPEDEGEFTCRVA  248 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~  248 (325)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (116)
T d1mjuh1          86 LTSDDSAVYYCANK   99 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEccc
Confidence            99999999999643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.05  E-value=2e-05  Score=50.98  Aligned_cols=77  Identities=12%  Similarity=0.104  Sum_probs=49.7

Q ss_pred             CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      .+|.+...+ ...|..|++|+|.|....  . ...+.|+|+|.........   ....+    ....+.|..+...|+|.
T Consensus         5 pkPsLsa~P-~~~V~~G~~VTL~C~~~~--~-~~~f~L~k~g~~~~~~~~~---~~~~~----~~~~f~~~~~~~~~~G~   73 (99)
T d1nkra2           5 EKPSLSAQP-GPTVLAGENVTLSCSSRS--S-YDMYHLSREGEAHERRLPA---GPKVN----GTFQADFPLGPATHGGT   73 (99)
T ss_dssp             CCCEEEEES-CSEECTTCEEEEEEEESS--C-CSEEEEEETTCSSCEEEEC---EEEET----TEEEEEEEEEECCSCEE
T ss_pred             CCCEEEEeC-CCcccCCCeEEEEECCCC--C-ccEEEEEECCCccccEEEc---cccCC----ccEEEEEeccccccCEE
Confidence            356666665 446889999999997642  2 2689999987543211100   00111    23466778888899999


Q ss_pred             EEEEEEeC
Q psy1095         243 FTCRVANE  250 (325)
Q Consensus       243 Y~C~~~~~  250 (325)
                      |+|.....
T Consensus        74 Y~C~y~~~   81 (99)
T d1nkra2          74 YRCFGSFH   81 (99)
T ss_dssp             EEEEEEET
T ss_pred             EEEEeecC
Confidence            99987654

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.05  E-value=2.8e-05  Score=50.04  Aligned_cols=81  Identities=21%  Similarity=0.221  Sum_probs=48.5

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcE-EEE-ecCCeE-EEEEccCCCCCCeEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARV-TIR-EKEDLR-FLEISEVTLEDAGLYTI  138 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~-~~~-~~~~~~-~l~i~~~~~~d~G~Y~C  138 (325)
                      .||.+.+.+.. ....++.++|.|.+.++ | ...++|+++|..+...... ... ..++.. ......+...+...|+|
T Consensus         2 ~PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC   80 (98)
T d1hdmb1           2 RPPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTC   80 (98)
T ss_dssp             BCCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEE
Confidence            36777654332 24567889999999994 4 5688999999988543211 111 112211 11112334455568999


Q ss_pred             EEEeCCe
Q psy1095         139 KVENNYG  145 (325)
Q Consensus       139 ~~~~~~~  145 (325)
                      .+.+...
T Consensus        81 ~V~H~sl   87 (98)
T d1hdmb1          81 VVEHIGA   87 (98)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9987643

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.04  E-value=5.1e-06  Score=55.10  Aligned_cols=76  Identities=13%  Similarity=0.313  Sum_probs=46.4

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc-------CCCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL-------DSDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      ...+.+|+.++|.|.++|+......+.|++.  |+.+      ..       ......++....+.......|.|.+++.
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~   88 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS   88 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence            4467789999999999886543356889872  3221      11       0111111111111111345799999999


Q ss_pred             CCCeEEEEEEE
Q psy1095         238 EDEGEFTCRVA  248 (325)
Q Consensus       238 ~d~G~Y~C~~~  248 (325)
                      +|++.|.|...
T Consensus        89 eDsAvYYCA~~   99 (119)
T d1qnzh_          89 DDSAVYYCAIH   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cceeEEEEEEe
Confidence            99999999653

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.04  E-value=5.8e-06  Score=54.99  Aligned_cols=78  Identities=15%  Similarity=0.211  Sum_probs=49.0

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccCC-------CCceEEEecCCcceeEEEEEeCC
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ++....+++|+++.|.|.++|+......+.|.+  .|+.+      ....       ..+.+.+...+.......|.|.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~   85 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence            344567889999999999998765445688887  23221      1111       11111111111122346799999


Q ss_pred             CCCCCCeEEEEEE
Q psy1095         235 VYPEDEGEFTCRV  247 (325)
Q Consensus       235 ~~~~d~G~Y~C~~  247 (325)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDtAvYYCAR   98 (127)
T d1n0xh1          86 LRSADTAVYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEEe
Confidence            9999999999963

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.04  E-value=5.1e-06  Score=55.33  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=48.7

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEec------cC-------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIK------LD-------SDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+++|+.+.|.|.++|+......+.|.+  .|+.+.      ..       +..+.++....+.......|.|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~   87 (127)
T d2fx7h1           8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccC
Confidence            3456788999999999998765446688886  232211      00       11111111111112244679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        88 ~eDTavYYCAR~~  100 (127)
T d2fx7h1          88 PEDTAVYYCAREG  100 (127)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccceEEEEeecc
Confidence            9999999997653

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.03  E-value=1.1e-05  Score=53.57  Aligned_cols=77  Identities=18%  Similarity=0.239  Sum_probs=48.5

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccC-------CC--CceEEEecCCcceeEEEEEeC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLD-------SD--MKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~-------~~--~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      +....+++|+.+.|.|.++|+......+.|+|  .|+.+      ...       +.  -++..+.+  .......|.|.
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD--~s~~t~yL~~~   84 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSAD--RSTNTAHLQWS   84 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEE--TTTTEEEEEES
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeec--CCCcEEEEeee
Confidence            34566789999999999998765335678887  22211      111       11  11111111  11244689999


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy1095         234 HVYPEDEGEFTCRVAN  249 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~  249 (325)
                      +++.+|++.|.|....
T Consensus        85 ~L~~eDTA~YYCAR~~  100 (124)
T d2b1hh1          85 SLKPSDTALYYCARLG  100 (124)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccccceEEEEeecC
Confidence            9999999999996443

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.03  E-value=4.5e-06  Score=54.98  Aligned_cols=77  Identities=17%  Similarity=0.314  Sum_probs=47.9

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCCCC-------ceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDSDM-------KPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+++|+++.|.|.++|+......+.|++.  |+.+      ......       +.++....+.......|.|.++
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL   86 (119)
T d1eapb1           7 SGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSL   86 (119)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecc
Confidence            345567889999999999987654367889872  2221      111110       0011111111123467999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         236 YPEDEGEFTCRV  247 (325)
Q Consensus       236 ~~~d~G~Y~C~~  247 (325)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (119)
T d1eapb1          87 TSEDSAVYFCKR   98 (119)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cCCcceEEEEEE
Confidence            999999999964

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.02  E-value=6.4e-06  Score=54.42  Aligned_cols=77  Identities=16%  Similarity=0.252  Sum_probs=49.4

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCC-------C--CceEEEecCCcceeEEEEEeC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDS-------D--MKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~-------~--~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      +....+++|+.+.|.|.++|+......+.|.|.  |+.+      ....       .  .++..+.+  .......|.|.
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D--~s~ntvyL~~~   85 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRD--TSATTAYMGLS   85 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEE--TTTTEEEEEEC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEecc--CCcceeeeccc
Confidence            455678899999999999987654467889872  2221      1111       1  11111111  11234579999


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy1095         234 HVYPEDEGEFTCRVAN  249 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~  249 (325)
                      +++.+|++.|.|....
T Consensus        86 ~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          86 SLRPEDTAVYYCARDP  101 (122)
T ss_dssp             SCCGGGCEEEEEEEET
T ss_pred             ccCCCcceEEEEeecC
Confidence            9999999999997653

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.02  E-value=5.4e-06  Score=54.54  Aligned_cols=78  Identities=17%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccC-------CCCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLD-------SDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      .....+++|+++.|.|.++|+......+.|.|.  |+.+      ...       +..+.+++...+.......|.|+++
T Consensus         7 sg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L   86 (120)
T d1ad9b1           7 SGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSL   86 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccccc
Confidence            345678899999999999987654467888872  2221      111       1111111111111123467999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         236 YPEDEGEFTCRVA  248 (325)
Q Consensus       236 ~~~d~G~Y~C~~~  248 (325)
                      +.+|.+.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (120)
T d1ad9b1          87 RSEDTAFYFCARE   99 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEEEc
Confidence            9999999999754

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.02  E-value=8.8e-06  Score=53.90  Aligned_cols=76  Identities=16%  Similarity=0.313  Sum_probs=48.0

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEec------cCC-------CC--ceEEEecCCcceeEEEEEeC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIK------LDS-------DM--KPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~------~~~-------~~--~~~~~~~~~~~~~~~~l~i~  233 (325)
                      +....+++|+.+.|.|.++++......+.|++  .|+.+.      ...       ..  ++....+  .......|.|.
T Consensus         7 sg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d--~s~n~v~L~i~   84 (120)
T d1pg7x1           7 SGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVD--RSSTTAYIELV   84 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEE--TTTTEEEEEEC
T ss_pred             ECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeec--cCcceEEcccc
Confidence            34456788999999999998764335688987  233221      111       00  1111111  11234579999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy1095         234 HVYPEDEGEFTCRVA  248 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~  248 (325)
                      +++.+|++.|.|...
T Consensus        85 ~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          85 RLTSNDSAVYYCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEeeec
Confidence            999999999999864

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.02  E-value=8.5e-06  Score=54.63  Aligned_cols=78  Identities=19%  Similarity=0.326  Sum_probs=48.6

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------c------------cCCCCceEEEecCCcceeEEEEE
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------K------------LDSDMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~------------~~~~~~~~~~~~~~~~~~~~~l~  231 (325)
                      ....+++|+++.|.|.++|+......+.|++.  |+.+      .            ..+..+.+++...+.......|.
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~   87 (127)
T d1i3ua_           8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence            34567889999999999987644367889873  2211      0            01111111111111112346799


Q ss_pred             eCCCCCCCCeEEEEEEEe
Q psy1095         232 IPHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       232 i~~~~~~d~G~Y~C~~~~  249 (325)
                      |.+++.+|++.|.|....
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999998653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.01  E-value=4.7e-06  Score=53.89  Aligned_cols=77  Identities=13%  Similarity=0.296  Sum_probs=48.4

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------cc---------CCCCceEEEecCCcceeEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KL---------DSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ....+.+|+++.|.|.++|+......+.|.+  .|+.+      ..         .+..+.+++...+.......|.|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            4567889999999999998765436788887  23211      10         1111111111111122346799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         235 VYPEDEGEFTCRVA  248 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~  248 (325)
                      ++.+|++.|.|.-.
T Consensus        88 L~~eDTAvYYCAr~  101 (109)
T d2ck0h1          88 LKTEDTGIYYCVRG  101 (109)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhHCEEEEEEEc
Confidence            99999999999743

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=7.3e-06  Score=55.03  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=45.6

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ecc-------CCCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IKL-------DSDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      .+....+.+|+.++|.|.......  ..+.|++.  +..   +..       .....+.....+    ....|.|.+++.
T Consensus         7 ~P~sv~~~~G~svtl~C~~s~~~~--~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~----~~~~L~I~~~~~   80 (119)
T d1f3rb2           7 SPSLLSASVGDRVTLSCKGSQNIN--NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG----TDYTLTISSLQP   80 (119)
T ss_dssp             ETSEECCCTTCCEEEEEECSSCCB--TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEB----TEEEEEECSCCG
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCc--ceeEEeeeecccccEEEEEeeccccCceeeeecccCCC----CEEEEEcccCcc
Confidence            344566788999999998754333  56899973  111   110       111111111111    346899999999


Q ss_pred             CCCeEEEEEEE
Q psy1095         238 EDEGEFTCRVA  248 (325)
Q Consensus       238 ~d~G~Y~C~~~  248 (325)
                      +|+|.|.|.+.
T Consensus        81 ~DsavYyCa~~   91 (119)
T d1f3rb2          81 EDVATYFCYQY   91 (119)
T ss_dssp             GGCSEEEEEEE
T ss_pred             CCCeEEEeecc
Confidence            99999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.01  E-value=7.1e-06  Score=54.55  Aligned_cols=77  Identities=14%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccCC-------CCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+++|+.+.|.|.++|+......+.|.+  .|+.+      ....       ..+.+++...+.......|.|.++
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L   85 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSL   85 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeeccc
Confidence            34567888999999999999766546788887  22221      1111       111111111111224568999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         236 YPEDEGEFTCRV  247 (325)
Q Consensus       236 ~~~d~G~Y~C~~  247 (325)
                      +.+|.+.|.|..
T Consensus        86 ~~eDTAvYYCAr   97 (126)
T d1lmka1          86 TSEDSAVYYCAR   97 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEee
Confidence            999999999964

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.6e-05  Score=50.81  Aligned_cols=84  Identities=20%  Similarity=0.328  Sum_probs=49.7

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCc--EEEEecCCe----EEEEEccCCCCCCeE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNAR--VTIREKEDL----RFLEISEVTLEDAGL  135 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d~G~  135 (325)
                      .+|.+.+.+.......++.++|.|.+.++ | ...|+|+++|..+.....  ......++.    ..|.|..........
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            45666554433222346789999999884 4 357999999987754311  111112222    235554444345669


Q ss_pred             EEEEEEeCCeeE
Q psy1095         136 YTIKVENNYGSV  147 (325)
Q Consensus       136 Y~C~~~~~~~~~  147 (325)
                      |+|.+.+.....
T Consensus        84 ytC~V~H~~~~~   95 (102)
T d1q0xl2          84 YSCQVTHEGHSS   95 (102)
T ss_dssp             EEEEEEETTEEE
T ss_pred             EEEEEEECCccE
Confidence            999998765433

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=7.6e-06  Score=53.55  Aligned_cols=74  Identities=16%  Similarity=0.281  Sum_probs=48.7

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      .+..++|.|.+.++.+.+..|.|.+++.......  .......+..+...+.|.|..-... ...|+|.+.+.....
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t--~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT--FPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE--CCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEE--CCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCE
Confidence            4678999999999887778999988765422111  1111133344556678888765443 457999999876544

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.00  E-value=3.6e-05  Score=49.58  Aligned_cols=81  Identities=21%  Similarity=0.323  Sum_probs=45.6

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcE--EEEecC-CeEEEEEccCCCCCCeEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARV--TIREKE-DLRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~--~~~~~~-~~~~l~i~~~~~~d~G~Y~C  138 (325)
                      .+|.+.+.|... ...++..+|.|.+.+ +|. ..|+|+++|..+......  .....+ .-..+....+...+.+.|+|
T Consensus         3 V~P~V~l~~~~~-~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC   81 (98)
T d1d5mb1           3 VYPEVTVYPAKT-QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTC   81 (98)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEE
T ss_pred             CCCEEEEECCCc-cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEE
Confidence            356666544332 344677889999998 443 478999999888543111  111122 22233334556677789999


Q ss_pred             EEEeCCe
Q psy1095         139 KVENNYG  145 (325)
Q Consensus       139 ~~~~~~~  145 (325)
                      .+.+...
T Consensus        82 ~V~H~sl   88 (98)
T d1d5mb1          82 QVEHPSV   88 (98)
T ss_dssp             EEECTTC
T ss_pred             EEEECCC
Confidence            9987643

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.00  E-value=1.3e-05  Score=52.73  Aligned_cols=78  Identities=15%  Similarity=0.257  Sum_probs=49.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEec------c---------CCCCceEEEecCCcceeEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIK------L---------DSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ....+.+|+.+.|.|.++|+......+.|.+  .|+.+.      .         .+..+.+++...+.......|.|.+
T Consensus         8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~   87 (120)
T d1dlfh_           8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT   87 (120)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceee
Confidence            3456788999999999998765557788987  333221      1         0111111111111112346799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|++.|.|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999997544

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.00  E-value=1.5e-05  Score=51.08  Aligned_cols=77  Identities=16%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095         165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT  244 (325)
Q Consensus       165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  244 (325)
                      |.+...+ ...|..|++|+|.|..... .  ..+.++|+|.......... .. ..   ....+.+.|.+++..|+|.|.
T Consensus         3 PsLsa~P-~~~V~~G~~VTl~C~~~~~-~--~~f~L~keg~~~~~~~~~~-~~-~~---~~~~a~F~l~~v~~~~~G~Y~   73 (96)
T d1nkra1           3 PSLLAHP-GPLVKSEETVILQCWSDVM-F--EHFLLHREGMFNDTLRLIG-EH-HD---GVSKANFSISRMTQDLAGTYR   73 (96)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEEESSC-C--SEEEEEEESSSCEEEEEEC-EE-ET---TEEEEEEEESSCCGGGCEEEE
T ss_pred             CEEEeeC-CCccCCCCcEEEEECCCCC-C--CEEEEEECCCcCCceeeee-ee-cC---CceEEEEEEcccCcccCeEEE
Confidence            5555554 4568899999999987421 2  6788988764321100000 00 00   013468999999999999999


Q ss_pred             EEEEeC
Q psy1095         245 CRVANE  250 (325)
Q Consensus       245 C~~~~~  250 (325)
                      |.....
T Consensus        74 C~y~~~   79 (96)
T d1nkra1          74 CYGSVT   79 (96)
T ss_dssp             EEEEBT
T ss_pred             EEEEcC
Confidence            987654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.99  E-value=6.3e-06  Score=55.49  Aligned_cols=79  Identities=15%  Similarity=0.268  Sum_probs=46.4

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec---cCCC------CceEEEecCCcceeEEEEEeCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK---LDSD------MKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~---~~~~------~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      +..+...+|+.++|.|.+.+.......+.|++.  +..   +.   ....      .................|.|.+++
T Consensus         8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            345566789999999988654321146889982  211   11   0000      001111111111234679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|+|.|.|....
T Consensus        88 ~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          88 EEDEAIYYCSYGE  100 (120)
T ss_dssp             GGGCSEEEEEECC
T ss_pred             cccceeEEEEEcC
Confidence            9999999997643

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=1.5e-05  Score=51.31  Aligned_cols=74  Identities=15%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc-------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL-------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE  242 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  242 (325)
                      +|+.++|.|.++|+......+.|+|.  |+.+      ..       .+..+.+++...+.......|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            48899999999987654467889872  3322      11       111222222222222345689999999999999


Q ss_pred             EEEEEEeCC
Q psy1095         243 FTCRVANEL  251 (325)
Q Consensus       243 Y~C~~~~~~  251 (325)
                      |.|......
T Consensus        81 YYCAr~~~~   89 (103)
T d1oari_          81 YYCARMWYY   89 (103)
T ss_dssp             EEEEEEECS
T ss_pred             EEeEEECCC
Confidence            999765443

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.98  E-value=1.8e-05  Score=52.09  Aligned_cols=74  Identities=20%  Similarity=0.361  Sum_probs=46.3

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ecc-----CCC--CceEEEecCCcceeEEEEEeCCCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IKL-----DSD--MKPEVQVDSKENLVIARLKIPHVYPE  238 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~~-----~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~  238 (325)
                      +....+.+|+.|+|.|.......  ..+.|++.  |..   +..     ...  .++.....+    ....|.|.+++.+
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~--~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~----~~~~L~I~~l~~~   79 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPK--NFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG----TTATLTISGAQPE   79 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGG--SCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEETTCCGG
T ss_pred             CCeeEECCCCCEEEEEECCCCCC--ccEEEEecccccceeeeccccccccccccceeeecCCC----CEeeeeEcCcccc
Confidence            34567889999999997743333  45889872  221   110     011  111111222    3468999999999


Q ss_pred             CCeEEEEEEEeC
Q psy1095         239 DEGEFTCRVANE  250 (325)
Q Consensus       239 d~G~Y~C~~~~~  250 (325)
                      |+|.|.|.+...
T Consensus        80 Dsa~YyCA~~~~   91 (108)
T d1nfde1          80 DEAAYYCLSSYG   91 (108)
T ss_dssp             GCSEEEEEEEET
T ss_pred             CCceEEEEeecC
Confidence            999999987643

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.98  E-value=2.9e-05  Score=50.13  Aligned_cols=77  Identities=18%  Similarity=0.334  Sum_probs=47.1

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcE-E-EEecCCe----EEEEEccCCCCCCeE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARV-T-IREKEDL----RFLEISEVTLEDAGL  135 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~-~-~~~~~~~----~~l~i~~~~~~d~G~  135 (325)
                      .+|.+.+.+.. ....|+..+|.|.+.|+ | ...|+|.++|..+...... . ....++.    ..|.+   ...+...
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~   79 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTF---LPSADEI   79 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEE---CCCTTCC
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEE---cCCCCCE
Confidence            56766654322 24567889999999995 4 4578999999987643111 1 1111221    22444   3445568


Q ss_pred             EEEEEEeCC
Q psy1095         136 YTIKVENNY  144 (325)
Q Consensus       136 Y~C~~~~~~  144 (325)
                      |+|.+.+..
T Consensus        80 ytC~V~H~s   88 (99)
T d1uvqa1          80 YDCKVEHWG   88 (99)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998754

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.98  E-value=1.3e-05  Score=53.48  Aligned_cols=79  Identities=13%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------c-------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------K-------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      .....+++|+.+.|.|.++|+......+.|.+.  ++.+      .       ..+..+.+++...+.......|.|.++
T Consensus         7 sG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL   86 (128)
T d2nxyd1           7 SGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNL   86 (128)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeec
Confidence            345568899999999999987654356788762  2211      1       111111111111111123467999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|++.|.|....
T Consensus        87 ~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          87 RSDDTAVYFCAGVY  100 (128)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccCceEEEEeEEe
Confidence            99999999998654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.98  E-value=3.3e-05  Score=51.30  Aligned_cols=78  Identities=17%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCC---CCCeeEEeeC--CEEe---c-------cCCCCceEEEecCCcceeEEEEE
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPP---NDHDISWFRN--NRLI---K-------LDSDMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~---~~~~~~W~~~--~~~~---~-------~~~~~~~~~~~~~~~~~~~~~l~  231 (325)
                      ++..+....+.+|+.|+|.|..++...   ....+.|++.  |...   .       .....++.....+    ....|.
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~----~~~~L~   80 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG----TDFTLK   80 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECS----SEEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccC----CcccCc
Confidence            344455677889999999999754221   1146889872  2111   0       1111111111222    457899


Q ss_pred             eCCCCCCCCeEEEEEEE
Q psy1095         232 IPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       232 i~~~~~~d~G~Y~C~~~  248 (325)
                      |.+++.+|+|.|.|...
T Consensus        81 I~~~~~~DsavYyCa~~   97 (113)
T d1n4xl_          81 ISRVEAEDLGIYYCFQG   97 (113)
T ss_dssp             ESSCCGGGCEEEEEEEC
T ss_pred             cCCCCcccCEEEEEEEC
Confidence            99999999999999644

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.97  E-value=2.1e-05  Score=52.29  Aligned_cols=77  Identities=17%  Similarity=0.254  Sum_probs=48.0

Q ss_pred             CcCeeEecCCcEEEEEEEEecCC-CCCeeEEeeC--CEEe---cc-------CCCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPP-NDHDISWFRN--NRLI---KL-------DSDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~-~~~~~~W~~~--~~~~---~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      +....+.+|++|+|.|...+... ....+.|++.  +..+   ..       ...........+    ....|.|.+++.
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l~~   82 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSG----NSASLTISGLQA   82 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEECSCCG
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCC----CEeeEEeCcCcc
Confidence            34667889999999998765322 1145889972  2111   00       011111111111    357899999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy1095         238 EDEGEFTCRVANEL  251 (325)
Q Consensus       238 ~d~G~Y~C~~~~~~  251 (325)
                      +|+|.|.|.+....
T Consensus        83 ~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          83 EDEADYYCSSYDGS   96 (112)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             ccCEEEEEeeecCC
Confidence            99999999876543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.97  E-value=2.5e-05  Score=51.75  Aligned_cols=76  Identities=14%  Similarity=0.165  Sum_probs=46.6

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCC---CCCeeEEeeC--CEEe---c-------cCCCCceEEEecCCcceeEEEEEe
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPP---NDHDISWFRN--NRLI---K-------LDSDMKPEVQVDSKENLVIARLKI  232 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~---~~~~~~W~~~--~~~~---~-------~~~~~~~~~~~~~~~~~~~~~l~i  232 (325)
                      +..+....+.+|+.|+|.|...+...   ...-+.|++.  |..+   .       ......+.....+    ....|.|
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~----~~~~L~I   80 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSG----TDFTLKI   80 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET----TEEEEEE
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCC----CEEEEEE
Confidence            34455677899999999998754221   1135889872  2211   0       1111111111222    3468999


Q ss_pred             CCCCCCCCeEEEEEE
Q psy1095         233 PHVYPEDEGEFTCRV  247 (325)
Q Consensus       233 ~~~~~~d~G~Y~C~~  247 (325)
                      .+++.+|+|.|.|..
T Consensus        81 ~~~~~eDsAvYYC~~   95 (112)
T d1ncwl1          81 SRVEAEDLGVYYCWQ   95 (112)
T ss_dssp             SSCCGGGCEEEEEEE
T ss_pred             CccccCcCEeEEEEc
Confidence            999999999999954

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.97  E-value=1.4e-05  Score=53.04  Aligned_cols=79  Identities=14%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCCC-------CceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDSD-------MKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+++|+.+.|.|.++|+......+.|++.  |+.+      .....       .+.+++...+.......|.|.++
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L   86 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL   86 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccccc
Confidence            345668899999999999886543357889872  3221      11110       01011111111113457999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|++.|.|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (121)
T d1j05b_          87 TSEDTAVYYCAPFG  100 (121)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             CcCcceEEEeEeec
Confidence            99999999997543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.5e-06  Score=55.59  Aligned_cols=75  Identities=16%  Similarity=0.277  Sum_probs=47.1

Q ss_pred             eeEecCCcEEEEEEEEecCCC--CCeeEEeeCCEEeccCCC----------CceEEEecCCcceeEEEEEeCCCCCCCCe
Q psy1095         174 LRCCDGDSVTFECQVQVVPPN--DHDISWFRNNRLIKLDSD----------MKPEVQVDSKENLVIARLKIPHVYPEDEG  241 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~--~~~~~W~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  241 (325)
                      +....|+.++|.|........  ...+.|.+++..+.....          .+......     ...+|.|.+++.+|+|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~-----g~~sL~I~~v~~~D~G   78 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT-----NNLSIVILALRPSDEG   78 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST-----TTTEEEECSCCGGGCE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccC-----CcEEEEECcCChHHCe
Confidence            457789999999976432211  146788887765421100          01111111     1357999999999999


Q ss_pred             EEEEEEEeCCCc
Q psy1095         242 EFTCRVANELGE  253 (325)
Q Consensus       242 ~Y~C~~~~~~~~  253 (325)
                      .|.|.+.+..+.
T Consensus        79 ~Y~C~V~~~~~~   90 (105)
T d1dr9a1          79 TYECVVLKYEKD   90 (105)
T ss_dssp             EEEEEEEECCTT
T ss_pred             EEEEEEEeCCCC
Confidence            999999865443

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=1.9e-05  Score=50.12  Aligned_cols=75  Identities=15%  Similarity=0.180  Sum_probs=46.0

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEEEEecCCe----EEEEEccCCCCCCeEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVTIREKEDL----RFLEISEVTLEDAGLYT  137 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~  137 (325)
                      .||.+.+...   ...+..++|.|.+.| +|. ..|+|+++|..+...........++.    ..|.+   ...+...|+
T Consensus         2 ~PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v---~~~~~~~yt   75 (91)
T d3frua1           2 EPPSMRLKAR---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEV---KRGDEHHYQ   75 (91)
T ss_dssp             BCCEEEEEEE---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEE---ETTCGGGEE
T ss_pred             CCCEEEEEec---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEE---CCCCCCEEE
Confidence            4676655322   234568999999999 454 47899999988764322222222221    22444   344556899


Q ss_pred             EEEEeCC
Q psy1095         138 IKVENNY  144 (325)
Q Consensus       138 C~~~~~~  144 (325)
                      |.+.+..
T Consensus        76 C~V~H~s   82 (91)
T d3frua1          76 CQVEHEG   82 (91)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998754

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.96  E-value=8.8e-06  Score=54.08  Aligned_cols=78  Identities=18%  Similarity=0.281  Sum_probs=48.5

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCCC-------CceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDSD-------MKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+.+|+.+.|.|.++|+......+.|++.  |+.+      .....       .+.++....+.......|.|.+++
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~   87 (126)
T d1dfbh1           8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR   87 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence            45567899999999999987654356889872  2221      11111       111111111111234679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        88 ~eDtavYYCAr~~  100 (126)
T d1dfbh1          88 AEDMALYYCVKGR  100 (126)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcceEEEEEecc
Confidence            9999999997543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.96  E-value=2.9e-07  Score=59.66  Aligned_cols=70  Identities=14%  Similarity=0.240  Sum_probs=46.2

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeCC------------CCCcEEEEe--cCCeEEEEEccCCCCCCeEEE
Q psy1095          74 NKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPAT------------PNARVTIRE--KEDLRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~  137 (325)
                      .++|.+|++|+|.|.... ....+.|||.  ++...            ...++....  ......|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            346889999999998753 3446899973  22110            112332221  223456999999999999999


Q ss_pred             EEEEeCC
Q psy1095         138 IKVENNY  144 (325)
Q Consensus       138 C~~~~~~  144 (325)
                      |.+....
T Consensus        81 CA~~~~~   87 (96)
T d1ymmd1          81 CATDTTS   87 (96)
T ss_dssp             EEEEETT
T ss_pred             EeEecCC
Confidence            9876543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=7.3e-06  Score=54.73  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccCC-------C--CceEEEecCCcceeEEEEEeC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLDS-------D--MKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~~-------~--~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      +....+++|+.+.|.|.++|+......+.|.+  .|+.+      ....       .  .+...+.+  .......|.|.
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D--~s~n~vyL~l~   84 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTAD--RSSNTAFMYLN   84 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEE--TTTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecc--cCcceEeeeee
Confidence            34566789999999999998764335688887  23221      1111       1  11111111  11234679999


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy1095         234 HVYPEDEGEFTCRVAN  249 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~~  249 (325)
                      +++.+|++.|.|....
T Consensus        85 sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          85 SLTSEDSAVYYCARES  100 (125)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCcccceEEEEeeeC
Confidence            9999999999997543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.95  E-value=4.8e-06  Score=55.30  Aligned_cols=82  Identities=12%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe---c-c-CCCCce---EEEecCCcceeEEEEEeCCCC
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI---K-L-DSDMKP---EVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~---~-~-~~~~~~---~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      +...+....+.+|+.|+|.|.......  ..+.|++.  |..+   . . ......   ..............|.|.++.
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~--~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~   80 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGY--PALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQ   80 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSC--CEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEEC
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCC--cceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcC
Confidence            344455678899999999998765433  56999982  2211   0 0 000000   000111111134679999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy1095         237 PEDEGEFTCRVANE  250 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~  250 (325)
                      .+|+|.|.|.+...
T Consensus        81 ~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          81 ESDSAVYYCALSGG   94 (110)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             cCCCcccceeecCC
Confidence            99999999987643

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=3.8e-06  Score=55.49  Aligned_cols=80  Identities=13%  Similarity=0.369  Sum_probs=48.6

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CE----EeccC-CCCceE------EEecCCcceeEEEEEeCCCCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NR----LIKLD-SDMKPE------VQVDSKENLVIARLKIPHVYPED  239 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~----~~~~~-~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d  239 (325)
                      ...+.+|++|+|.|..++.......+.|.+.  +.    .+... ......      .....+.......|.|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            3467899999999998754321156889983  22    11111 111000      11111122345789999999999


Q ss_pred             CeEEEEEEEeCCC
Q psy1095         240 EGEFTCRVANELG  252 (325)
Q Consensus       240 ~G~Y~C~~~~~~~  252 (325)
                      +|.|.|.......
T Consensus        84 sa~YyCa~~~~~~   96 (110)
T d1u9ka_          84 SGLYRCVIYHPPN   96 (110)
T ss_dssp             CEEEEEEEECTTS
T ss_pred             CEEEEEEEeCCCC
Confidence            9999998865443

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.95  E-value=9.9e-06  Score=53.71  Aligned_cols=78  Identities=13%  Similarity=0.238  Sum_probs=48.3

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCC-------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+.+|+.+.|.|.++|+.-....+.|++.  |+.+      ....       ..+.+++...+.......|.|++++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~   87 (122)
T d1bz7b1           8 GGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLR   87 (122)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeec
Confidence            44567889999999999987644366889872  2221      1111       0111111111111234679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (122)
T d1bz7b1          88 SEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCceEEEeecCC
Confidence            9999999997643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.95  E-value=2.1e-05  Score=50.36  Aligned_cols=71  Identities=18%  Similarity=0.296  Sum_probs=46.4

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +..++|.|.+.++.|....+.|+++|..+............++ ..+...+.|.+..   .+...|+|.+.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEECCC
Confidence            4578999999998777789999999998865433221111222 2333445566543   344579999988643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.95  E-value=1.3e-05  Score=53.37  Aligned_cols=78  Identities=14%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccC-------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLD-------SDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+++|+++.|.|.++|+......+.|.+.  |+.+      ...       +..+.+++...+.......|.|++++
T Consensus         7 G~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~   86 (126)
T d1rjca1           7 GGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLK   86 (126)
T ss_dssp             CCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccC
Confidence            45567899999999999987665567889872  2221      111       11111111111111234569999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        87 ~eDTAvYYCAr~~   99 (126)
T d1rjca1          87 PEDTAMYYCAADT   99 (126)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccCceeEEEeec
Confidence            9999999997543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.95  E-value=2e-05  Score=52.32  Aligned_cols=75  Identities=19%  Similarity=0.310  Sum_probs=44.9

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec------------cCCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK------------LDSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      |....+.+|+.++|.|..... .  ..+.|++.  +..+.            ............. .......|.|.++.
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~L~i~~~~   81 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPISG-H--DNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAER-TGGTYSTLKVQPAE   81 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCTT-C--SEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEEC-TTSSSEEEEESSCC
T ss_pred             CCEEEECCCCCEEEEEEECCC-C--ceEEEEEEccCCcceecceecccCcccccCCCCccEEEEc-CCCCEEEEEECCcc
Confidence            445678899999999975432 2  57899972  21110            0111110010111 01123689999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (111)
T d2esve1          82 LEDSGVYFCASSQ   94 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCceEEEeeeC
Confidence            9999999998654

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.94  E-value=1.9e-05  Score=52.46  Aligned_cols=74  Identities=16%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeC------C-C---------CCcEEEEecCCeEEEEEccC
Q psy1095          67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPA------T-P---------NARVTIREKEDLRFLEISEV  128 (325)
Q Consensus        67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~------~-~---------~~~~~~~~~~~~~~l~i~~~  128 (325)
                      .+.+.|....+.+|++++|.|.........+.||+.  |+.+      . .         ..++..... ....|.|..+
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~l~l~~~   81 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV-TDTELRLQVA   81 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE-ETTEEEEEEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc-cccEEEEecC
Confidence            466778888899999999999986655567899984  2211      0 0         112222211 1235888888


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         129 TLEDAGLYTIKVE  141 (325)
Q Consensus       129 ~~~d~G~Y~C~~~  141 (325)
                      ..+|++.|.|...
T Consensus        82 ~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          82 NMSQGRTLYCTCS   94 (112)
T ss_dssp             SCCSCEEEEEEEE
T ss_pred             CccCCccEEEEEe
Confidence            9999999999864

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=8.4e-06  Score=52.03  Aligned_cols=71  Identities=17%  Similarity=0.303  Sum_probs=49.5

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+ ...|..|++|+|.|.... ..  ..+.|+|+|......     . ...+    ..+.+.|.+++..|+|.|
T Consensus         4 kPsLsa~P-~~~V~~G~~VTL~C~~~~-~~--~~f~L~Keg~~~~~~-----~-~~~~----~~a~F~i~~v~~~~~G~Y   69 (93)
T d1olla2           4 TPTLSVHP-GPEVISGEKVTFYCRLDT-AT--SMFLLLKEGRSSHVQ-----R-GYGK----VQAEFPLGPVTTAHRGTY   69 (93)
T ss_dssp             CCEEEEES-CSEEETTCEEEEEEECSS-SC--SEEEEEEESSSCEEE-----E-EECS----SEEEEEEEECCGGGCEEE
T ss_pred             CCEEEEeC-CCcccCCCcEEEEECCCC-CC--CEEEEEECCCcccee-----e-cCCC----ceeEEEecccChhcCceE
Confidence            46666665 456889999999998642 22  689999977532211     1 0111    346899999999999999


Q ss_pred             EEEEE
Q psy1095         244 TCRVA  248 (325)
Q Consensus       244 ~C~~~  248 (325)
                      +|...
T Consensus        70 ~C~~~   74 (93)
T d1olla2          70 RCFGS   74 (93)
T ss_dssp             EEECE
T ss_pred             EEEeE
Confidence            99754

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.93  E-value=7.3e-06  Score=54.21  Aligned_cols=78  Identities=17%  Similarity=0.325  Sum_probs=48.8

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc---------CCCCceEEEecCCcceeEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL---------DSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~---------~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ....+++|+.+.|.|.++|+......+.|++.  |+.+      ..         .+..+.++....+.......|.|.+
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   87 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceee
Confidence            45568889999999999987654356889872  3221      10         0111111111111122346799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|++.|.|....
T Consensus        88 L~~eDTAvYYCar~~  102 (122)
T d1q9rb1          88 LRAEDSATYYCARDH  102 (122)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             eccCcceEEEEEecC
Confidence            999999999998643

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.93  E-value=1.2e-05  Score=53.66  Aligned_cols=78  Identities=13%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEec------c-------CCC--CceEEEecCCcceeEEEEEe
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIK------L-------DSD--MKPEVQVDSKENLVIARLKI  232 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~------~-------~~~--~~~~~~~~~~~~~~~~~l~i  232 (325)
                      ++....+++|+.+.|.|.++|+......+.|.|  .|+.+.      .       .+.  .++..+.+  .......|.|
T Consensus         5 esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D--~s~~tv~L~~   82 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTAD--QATSTAYMEL   82 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEE--TTTTEEEEEE
T ss_pred             ccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEecc--CCccEEEEEe
Confidence            344566789999999999998765446788887  222211      0       011  11121121  1123467999


Q ss_pred             CCCCCCCCeEEEEEEEe
Q psy1095         233 PHVYPEDEGEFTCRVAN  249 (325)
Q Consensus       233 ~~~~~~d~G~Y~C~~~~  249 (325)
                      .+++.+|++.|.|....
T Consensus        83 ~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          83 TNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             eccCCCCcEEEEEEeec
Confidence            99999999999997653

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.93  E-value=1e-05  Score=54.01  Aligned_cols=78  Identities=17%  Similarity=0.276  Sum_probs=48.7

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCCC-------CceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDSD-------MKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+++|+.+.|.|.++|+......+.|.+.  |+.+      .....       .+.+++...+.......|+|++++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~   87 (127)
T d2fb4h1           8 GGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLR   87 (127)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeee
Confidence            34567889999999999987654467888872  2221      11111       111111111112244679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (127)
T d2fb4h1          88 PEDTGVYFCARDG  100 (127)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ecceeEEEEEEec
Confidence            9999999997654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.93  E-value=1.5e-05  Score=52.94  Aligned_cols=78  Identities=17%  Similarity=0.264  Sum_probs=48.8

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc-------CCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL-------DSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+.+|+.+.|.|.++|+......+.|+|.  |+.+      ..       .+..+.+++...+.......|.|.+++
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~   87 (125)
T d1op3h1           8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (125)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence            45568899999999999986644356888872  2221      11       111111111111111244679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (125)
T d1op3h1          88 VEDTAIYYCARKG  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CccceeEeEeecc
Confidence            9999999997643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=5.3e-06  Score=53.41  Aligned_cols=75  Identities=16%  Similarity=0.289  Sum_probs=49.2

Q ss_pred             CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      +|.+...+. ..|..|++|+|.|... .+.  ..|.++|++...........   ..+    ..+.+.|.+++..|+|.|
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~--~~f~L~keg~~~~~~~~~~~---~~~----~~a~F~i~~v~~~~~G~Y   72 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QET--QEYRLYREKKTAPWITRIPQ---ELV----KKGQFPIPSITWEHTGRY   72 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTC--CCEEEEESSSCCHHHHTSCH---HHH----TTTEEEESSCCGGGCEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCC--CEEEEEECCCCcccEEEccC---CCC----CEEEEEEEecCHHHCCeE
Confidence            466666554 5688999999999863 222  67888888754221000000   000    124799999999999999


Q ss_pred             EEEEEe
Q psy1095         244 TCRVAN  249 (325)
Q Consensus       244 ~C~~~~  249 (325)
                      +|....
T Consensus        73 ~C~y~~   78 (96)
T d1ugna1          73 RCYYGS   78 (96)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            998754

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=0.00021  Score=42.93  Aligned_cols=77  Identities=13%  Similarity=0.336  Sum_probs=52.6

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE----EeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR----LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA  248 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  248 (325)
                      ...+..|+.+.|.|.+.---.. |.++|-|-+.    ++.....  ...+-..+.......|.+..+-.+|.|.|+|.|.
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~R-PnVtWCKlngt~cv~Le~~pq--~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSan   88 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHR-PNVTWCKHNGTIWVPLEVGPQ--LYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   88 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSC-CCEEEEEECSSSEEECCCBTT--EEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             eeeEecCCceEecCcchhhcCC-CCcEEEEeCCcEEEEeecCCc--cccchhhcCCeeEEEEEeeeeeecCCCceEEecC
Confidence            3467789999999999754333 7899987332    2222222  2222333444566789999999999999999997


Q ss_pred             eCCC
Q psy1095         249 NELG  252 (325)
Q Consensus       249 ~~~~  252 (325)
                      -..+
T Consensus        89 f~s~   92 (104)
T d1xaua_          89 FNSQ   92 (104)
T ss_dssp             ETTE
T ss_pred             CChh
Confidence            6554

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.92  E-value=2.4e-05  Score=51.28  Aligned_cols=78  Identities=17%  Similarity=0.284  Sum_probs=48.9

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccC------CCCceEEEecCCcceeEEEEEeCCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLD------SDMKPEVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      ....+.+|+.+.|.|.++|+......+.|.+.  |+.+      ..+      +..+.++....+.......|.|.+++.
T Consensus         8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~   87 (118)
T d1lo4h1           8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS   87 (118)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence            34567889999999999988765467889872  2221      111      111111111111112346799999999


Q ss_pred             CCCeEEEEEEEe
Q psy1095         238 EDEGEFTCRVAN  249 (325)
Q Consensus       238 ~d~G~Y~C~~~~  249 (325)
                      +|++.|.|....
T Consensus        88 eDtA~YyCAr~~   99 (118)
T d1lo4h1          88 EDTAIYYCARGT   99 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEecccC
Confidence            999999997543

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.92  E-value=9e-06  Score=53.57  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=50.9

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV  254 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  254 (325)
                      +..+..++|.|.+.++.+....+.|+++|..+......... ...++.+...+.|.+..-..  ...|+|.+.+.....
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~-~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~~   96 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNT-MKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNKN   96 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCC-EECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSGG
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccce-ecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCCC
Confidence            44567899999999988777899999998876543322221 12333455567777765433  237999999865443

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=2.4e-05  Score=52.07  Aligned_cols=74  Identities=12%  Similarity=0.195  Sum_probs=45.8

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEec--c-----------CCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIK--L-----------DSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+.+|+.++|.|..... .  ..+.|++  .+....  .           ...........   ......|.|.++
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~--~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~   79 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPISG-H--RSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQF---SNSRSEMNVSTL   79 (113)
T ss_dssp             CSEEEEETTCCEEEEEECSTT-C--CEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEEC---TTSCEEEEECSC
T ss_pred             CCeEEECCCCCEEEEEEECCC-C--CEEEEEEeecccceEeeeeecccccccccccccceeeccC---cCCeeEEEECCC
Confidence            445678899999999986432 2  5789998  222211  0           00001111010   113468999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy1095         236 YPEDEGEFTCRVANE  250 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~~  250 (325)
                      +.+|+|.|.|.+...
T Consensus        80 ~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          80 ELGDSALYLCASSLA   94 (113)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             CcccceeeeeeeeCC
Confidence            999999999987643

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.91  E-value=9e-06  Score=53.83  Aligned_cols=77  Identities=14%  Similarity=0.260  Sum_probs=47.2

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------ccCC-------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+++|+.+.|.|.++|+......+.|.|.  |+.+      ....       ..+.+++...+.......|.|.+++
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~   87 (121)
T d1ol0a_           8 GGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLR   87 (121)
T ss_dssp             ECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecc
Confidence            34567889999999999986543356788862  2221      1111       1111111111111234679999999


Q ss_pred             CCCCeEEEEEEE
Q psy1095         237 PEDEGEFTCRVA  248 (325)
Q Consensus       237 ~~d~G~Y~C~~~  248 (325)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d1ol0a_          88 AEDTAVYYCARE   99 (121)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEEEe
Confidence            999999999754

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.91  E-value=1.7e-05  Score=52.61  Aligned_cols=77  Identities=10%  Similarity=0.327  Sum_probs=46.3

Q ss_pred             CeeEecCCcEEEEEEEEecCCCC--CeeEEeeC--CEEec------c------CCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPND--HDISWFRN--NRLIK------L------DSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~--~~~~W~~~--~~~~~------~------~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ...+.+|+.|+|.|.++|+....  ..+.|+|.  ++.+.      .      ....+.++....+.......|.|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            44577899999999998764321  35789973  22211      0      000111111211111234689999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        89 ~eDsAvYyCAr~~  101 (120)
T d2agjh1          89 PVDTATYYCARTS  101 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             eccceEEeeEecC
Confidence            9999999997543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.1e-05  Score=51.36  Aligned_cols=67  Identities=9%  Similarity=0.193  Sum_probs=41.9

Q ss_pred             eEecCCCeEEEEEEEEecC--CCeeE-EeeC-CeeC---------------CCCCcEE--EEecCCeEEEEEccCCCCCC
Q psy1095          75 KICDLGDTVRFQCSVTGQP--APWTS-WSKD-GKPA---------------TPNARVT--IREKEDLRFLEISEVTLEDA  133 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~~p--~~~v~-W~~~-~~~~---------------~~~~~~~--~~~~~~~~~l~i~~~~~~d~  133 (325)
                      ..+.+|++++|.|...+..  ...+. |++. +..+               ....++.  ....+...+|.|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            4567899999999986533  22233 4442 1110               0012222  23344566899999999999


Q ss_pred             eEEEEEEE
Q psy1095         134 GLYTIKVE  141 (325)
Q Consensus       134 G~Y~C~~~  141 (325)
                      |.|.|.+.
T Consensus        90 avYyCa~~   97 (118)
T d1yjdc1          90 DIYFCKIE   97 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999764

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=5.8e-06  Score=56.46  Aligned_cols=76  Identities=16%  Similarity=0.351  Sum_probs=50.1

Q ss_pred             EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCce--EEE---ecCCcceeEEEEEeCCCCCCCCe-EEEEEEEe
Q psy1095         176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP--EVQ---VDSKENLVIARLKIPHVYPEDEG-EFTCRVAN  249 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~  249 (325)
                      +..+..++|.|.+.++.+.+..|.|+++|..+..+.....  ...   ..+..+...+.|.|..-...+.| .|+|.+.+
T Consensus        17 ~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H   96 (127)
T d1ogae2          17 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQF   96 (127)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEE
T ss_pred             hccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEE
Confidence            3446789999999998776689999999988754321100  000   11223445577888766555655 79999988


Q ss_pred             CC
Q psy1095         250 EL  251 (325)
Q Consensus       250 ~~  251 (325)
                      ..
T Consensus        97 ~~   98 (127)
T d1ogae2          97 YG   98 (127)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=2.1e-05  Score=52.45  Aligned_cols=77  Identities=16%  Similarity=0.333  Sum_probs=45.7

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec------cCCCCc-----eEEEecCCcceeEEEEEeCCCC
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK------LDSDMK-----PEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~------~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      .+....+.+|+.|+|.|.... ..  ..+.|++.  +..+.      ......     ....... .......|.|.++.
T Consensus         5 sP~~~~~~~G~svtl~C~~s~-~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~   80 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQNL-NH--DAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSR-EKKESFPLTVTSAQ   80 (114)
T ss_dssp             SCSEEEEETTCCEEECCEECS-CC--SEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECC-SSTTBCCEEECSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEec-CC--CcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEc-ccCCeEEEEECcCC
Confidence            344567889999999998752 22  67999972  21110      000000     0000000 01123579999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy1095         237 PEDEGEFTCRVANE  250 (325)
Q Consensus       237 ~~d~G~Y~C~~~~~  250 (325)
                      .+|+|.|.|.+...
T Consensus        81 ~~DSa~YyCa~~~~   94 (114)
T d1ogae1          81 KNPTAFYLCASSSR   94 (114)
T ss_dssp             SCCCEEEEEEEESS
T ss_pred             cCCceeEEEeeccC
Confidence            99999999976543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.90  E-value=1e-05  Score=54.27  Aligned_cols=77  Identities=14%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             cCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec---------c------CCCCceEEEecCCcceeEEEEEeCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK---------L------DSDMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~---------~------~~~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ....+++|+++.|.|.++|+......+.|++.  |+.+.         .      .+..+.+++...+.......|.|.+
T Consensus         8 G~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~   87 (131)
T d3c2ah1           8 GGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNS   87 (131)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceec
Confidence            44567899999999999987654457888872  22210         0      1111111112111222446799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         235 VYPEDEGEFTCRVA  248 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~  248 (325)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          88 LKTEDTAVYSCTTD  101 (131)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEecc
Confidence            99999999999754

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.90  E-value=9.5e-06  Score=53.61  Aligned_cols=78  Identities=14%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccCC-------CCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+++|+.+.|.|.++|+......+.|.+  .|+.+      ....       ..+.+++...+.......|.|+++
T Consensus         7 sG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL   86 (124)
T d1yedb1           7 SGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSL   86 (124)
T ss_dssp             CCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESC
T ss_pred             eCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccccc
Confidence            34556788999999999998765435688887  22221      1111       111111111111123467999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         236 YPEDEGEFTCRVA  248 (325)
Q Consensus       236 ~~~d~G~Y~C~~~  248 (325)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAR~   99 (124)
T d1yedb1          87 KSEDSAVYFCTRW   99 (124)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CCCcceEEEeccc
Confidence            9999999999753

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=4.8e-05  Score=50.91  Aligned_cols=73  Identities=12%  Similarity=0.230  Sum_probs=44.6

Q ss_pred             CeeEecCCcEEEEEEEEecCC-CCCeeEEeeC--CEEec-----cC--------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPP-NDHDISWFRN--NRLIK-----LD--------SDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~-~~~~~~W~~~--~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ...+.+|+.++|.|....... ....+.|++.  ++...     ..        .+........+    ....|.|.+++
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l~   83 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNE----SRVNLTIQGLR   83 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEET----TEEEEEECSCC
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCC----CEEEEEhhcCc
Confidence            445678999999999864332 1135789982  22211     00        11111111111    35789999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (117)
T d1dqta_          84 AVDTGLYLCKVEL   96 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCEeEEEEEec
Confidence            9999999998753

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.8e-05  Score=50.16  Aligned_cols=84  Identities=18%  Similarity=0.294  Sum_probs=49.0

Q ss_pred             CCCeeEec-CCc-eEecCCCeEEEEEEEEe-cCCC-eeEEeeCCeeCCCCCcEE-EEecCCe----EEEEEccCCCCCCe
Q psy1095          64 SSPRFYAV-PHN-KICDLGDTVRFQCSVTG-QPAP-WTSWSKDGKPATPNARVT-IREKEDL----RFLEISEVTLEDAG  134 (325)
Q Consensus        64 ~~p~~~~~-~~~-~~v~~g~~v~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~-~~~~~~~----~~l~i~~~~~~d~G  134 (325)
                      .||.+.+. |.. .....+.+++|.|.+.+ +|.. .|+|+++|..+....... ....++.    ..|.|..-......
T Consensus         3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~   82 (104)
T d1o0va1           3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR   82 (104)
T ss_dssp             CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCC
Confidence            35655432 221 12345668999999988 5544 689999999886432211 1222322    23555443333356


Q ss_pred             EEEEEEEeCCeeE
Q psy1095         135 LYTIKVENNYGSV  147 (325)
Q Consensus       135 ~Y~C~~~~~~~~~  147 (325)
                      .|+|.+.+.....
T Consensus        83 ~ytC~V~H~~~t~   95 (104)
T d1o0va1          83 TYTCQVTYQGHTF   95 (104)
T ss_dssp             CEEEEEEETTEEE
T ss_pred             EEEEEEEECCEeE
Confidence            7999998876543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.2e-05  Score=52.67  Aligned_cols=82  Identities=15%  Similarity=0.229  Sum_probs=49.6

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcEE---EEecCCe----EEEEEccCCCCCCe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARVT---IREKEDL----RFLEISEVTLEDAG  134 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~---~~~~~~~----~~l~i~~~~~~d~G  134 (325)
                      .+|.+.+.|.+.....++.++|.|.+.+ +| ...|+|+++|..+.......   ....++.    ..|.|......+..
T Consensus         3 ~~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~   82 (105)
T d1fp5a2           3 AAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKD   82 (105)
T ss_dssp             BCCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGG
T ss_pred             CCCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCC
Confidence            3566544433333445778999999988 45 46899999999876432111   1112221    23555544444556


Q ss_pred             EEEEEEEeCCe
Q psy1095         135 LYTIKVENNYG  145 (325)
Q Consensus       135 ~Y~C~~~~~~~  145 (325)
                      .|+|.+.+...
T Consensus        83 ~ytC~V~H~~l   93 (105)
T d1fp5a2          83 EFICRAVHEAA   93 (105)
T ss_dssp             GEEEEEECTTS
T ss_pred             EEEEEEEECCC
Confidence            89999987543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.87  E-value=7.1e-06  Score=54.86  Aligned_cols=78  Identities=18%  Similarity=0.242  Sum_probs=48.0

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccCC-------CCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLDS-------DMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      +....+.+|+.+.|.|.++|+......+.|.+  .|+.+      ....       ..+.+++...+.......|.|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL   86 (130)
T d1rzga1           7 SGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSL   86 (130)
T ss_dssp             CCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeec
Confidence            34556888999999999988764335788887  22221      1111       111111111111123467999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         236 YPEDEGEFTCRVA  248 (325)
Q Consensus       236 ~~~d~G~Y~C~~~  248 (325)
                      +.+|++.|.|...
T Consensus        87 ~~eDtA~YYCAr~   99 (130)
T d1rzga1          87 RSEDTAVFYCASP   99 (130)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CCCccEEEEEEEe
Confidence            9999999999753

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.87  E-value=4.1e-05  Score=50.79  Aligned_cols=68  Identities=18%  Similarity=0.351  Sum_probs=47.1

Q ss_pred             CceEecCCCeEEEEEEEEecC----CCeeEEeeC--CeeC--------------C--CCCcEEEEec--CCeEEEEEccC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQP----APWTSWSKD--GKPA--------------T--PNARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~~--~~~~--------------~--~~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      ....+.+|++|+|.|.+.|..    ...+.|+|.  ++.+              .  -..++.+..+  .....|.|.++
T Consensus         8 g~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l   87 (120)
T d2agjh1           8 GPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNL   87 (120)
T ss_dssp             CCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESC
T ss_pred             CCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEee
Confidence            344578899999999988743    245789974  2211              0  0246665543  23567999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         129 TLEDAGLYTIKV  140 (325)
Q Consensus       129 ~~~d~G~Y~C~~  140 (325)
                      +.+|++.|.|..
T Consensus        88 ~~eDsAvYyCAr   99 (120)
T d2agjh1          88 DPVDTATYYCAR   99 (120)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             eeccceEEeeEe
Confidence            999999999964

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.86  E-value=2.6e-05  Score=51.84  Aligned_cols=76  Identities=13%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE---ec---------cCCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL---IK---------LDSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      .+....+.+|+.++|.|.... ..  ..+.|++.  +..   +.         ............. .......|.|.++
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~--~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~   80 (112)
T d1kgce1           5 SPRYKVAKRGQDVALRCDPIS-GH--VSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER-PEGSVSTLKIQRT   80 (112)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TC--CEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC-TTSSCEEEEESSC
T ss_pred             CCCeEEECCCCCEEEEEEECC-CC--CEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC-CcCCEEEEEECCC
Confidence            344566789999999997542 22  57899872  211   10         0011100000100 1113468999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          81 QQEDSAVYLCASSL   94 (112)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             CcCCCEEEEEeeeC
Confidence            99999999998754

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.85  E-value=2.1e-05  Score=52.75  Aligned_cols=79  Identities=19%  Similarity=0.342  Sum_probs=49.3

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEec-------c------CCCCceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIK-------L------DSDMKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~~-------~------~~~~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      .....+++|+.+.|.|.++|+......+.|.|  .++.+.       .      .+..+.+++...+.......|.+.++
T Consensus         6 sG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L   85 (133)
T d1rzfh1           6 SGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGL   85 (133)
T ss_dssp             CCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccC
Confidence            34556889999999999998765446788887  222111       0      11111111111111224567999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|++.|.|....
T Consensus        86 ~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          86 RSDDTAVYYCASNS   99 (133)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCCCEEEEeeecc
Confidence            99999999996644

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.85  E-value=6e-06  Score=53.33  Aligned_cols=73  Identities=15%  Similarity=0.296  Sum_probs=42.5

Q ss_pred             eEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe------cc------CCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         175 RCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI------KL------DSDMKPEVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~------~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      .+++|+.+.|.|.++|+......+.|.+.  |+.+      ..      .+..+.+++...+.......|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            35689999999999876543356788873  2211      11      1111111111111122346799999999999


Q ss_pred             eEEEEEE
Q psy1095         241 GEFTCRV  247 (325)
Q Consensus       241 G~Y~C~~  247 (325)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=3.9e-05  Score=49.89  Aligned_cols=73  Identities=15%  Similarity=0.278  Sum_probs=49.9

Q ss_pred             cCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         178 DGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      .++.+.|.|.+.++.+. ...+.|.+++..+......  .....+..+...+.|.|..........|+|.|.+...
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~--~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFP--PALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECC--CEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEee--eEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            46789999999997443 3578898887655422111  1123444566778899987776666789999988654

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.84  E-value=4.3e-06  Score=55.13  Aligned_cols=78  Identities=14%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------cc--CCC-------CceEEEecCCcceeEEEEEeC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KL--DSD-------MKPEVQVDSKENLVIARLKIP  233 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~--~~~-------~~~~~~~~~~~~~~~~~l~i~  233 (325)
                      .....+++|+.+.|.|.++|+......+.|.+  .|+.+      ..  +..       .+.+++...+.......|.|.
T Consensus         7 SG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~   86 (121)
T d1nfdf1           7 SGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMN   86 (121)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceec
Confidence            34567889999999999998765435678887  33222      11  110       000011111111234579999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy1095         234 HVYPEDEGEFTCRVA  248 (325)
Q Consensus       234 ~~~~~d~G~Y~C~~~  248 (325)
                      +++.+|++.|.|...
T Consensus        87 ~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          87 RLRVDDTAIYYCTRA  101 (121)
T ss_dssp             SCCGGGCEECEEEEE
T ss_pred             ccCCCcceEEEEecc
Confidence            999999999999754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.84  E-value=7.9e-06  Score=54.08  Aligned_cols=78  Identities=15%  Similarity=0.247  Sum_probs=46.9

Q ss_pred             cCeeEecCCcEEEEEEEEecCC--CCCeeEEeeC--CEEe------ccCCC------CceEEEecCCcceeEEEEEeCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPP--NDHDISWFRN--NRLI------KLDSD------MKPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~--~~~~~~W~~~--~~~~------~~~~~------~~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      ....+.+|+.+.|.|.++|+..  ....+.|+|.  |+.+      ..+..      .+.+++...+.......|.|.++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL   87 (120)
T d1ai1h1           8 GPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV   87 (120)
T ss_dssp             CCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC
T ss_pred             CCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee
Confidence            3456788999999999998653  2245789872  3222      11111      00011111111113467999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy1095         236 YPEDEGEFTCRVAN  249 (325)
Q Consensus       236 ~~~d~G~Y~C~~~~  249 (325)
                      +.+|++.|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          88 TNEDTAMYYCSREN  101 (120)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             eccceeEEEEEecC
Confidence            99999999997543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.84  E-value=0.00022  Score=46.14  Aligned_cols=67  Identities=15%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             ecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcEEEE-ecCCeE----EEEEccCCCCCCeEEEEEEEeCCee
Q psy1095          77 CDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARVTIR-EKEDLR----FLEISEVTLEDAGLYTIKVENNYGS  146 (325)
Q Consensus        77 v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~-~~~~~~----~l~i~~~~~~d~G~Y~C~~~~~~~~  146 (325)
                      +..|+..+|.|.+.| +| ...|.|+++|..+......... ..++..    .|.|   ..++...|+|.+.+....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~l~   88 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEPDR   88 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETTTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCCCC
Confidence            456888999999999 45 3478999999987654333332 223322    2333   444556799999887543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.84  E-value=1.5e-05  Score=52.40  Aligned_cols=78  Identities=15%  Similarity=0.253  Sum_probs=47.7

Q ss_pred             cCeeEecCCcEEEEEEEEecCCC-CCeeEEee--CCEEec------cCC------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPN-DHDISWFR--NNRLIK------LDS------DMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~--~~~~~~------~~~------~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+++|+.+.|.|.++|+.-. ...+.|.|  .|+.+.      .+.      ..+.+++...+.......|.|.+++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~   87 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT   87 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence            45568899999999999987652 24578876  333221      111      1110111111111234679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (119)
T d1ncwh1          88 TEDTATYYCAGLL  100 (119)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCceEEEEeEec
Confidence            9999999997543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.83  E-value=7.2e-05  Score=48.01  Aligned_cols=80  Identities=24%  Similarity=0.307  Sum_probs=43.6

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcE--EEEecCCe-EEEEEccCCCCCCeEEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARV--TIREKEDL-RFLEISEVTLEDAGLYTIK  139 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~--~~~~~~~~-~~l~i~~~~~~d~G~Y~C~  139 (325)
                      +|.+.+.|... ...|+.++|.|.+.++ | ...|+|.++|.++......  .....++. .......+...+...|+|.
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   80 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCH   80 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEE
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEE
Confidence            46666554333 3457778999999984 4 4578999999876543111  11112221 2222234455666799999


Q ss_pred             EEeCCe
Q psy1095         140 VENNYG  145 (325)
Q Consensus       140 ~~~~~~  145 (325)
                      +.+...
T Consensus        81 V~H~sl   86 (97)
T d1uvqb1          81 VEHPSL   86 (97)
T ss_dssp             EECTTC
T ss_pred             EEeCCC
Confidence            987643

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.80  E-value=8.1e-05  Score=48.75  Aligned_cols=70  Identities=20%  Similarity=0.421  Sum_probs=48.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEec--CCeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~~  127 (325)
                      ++....+.+|++++|.|.+.|..  ...+.|++.  ++.      +. .          ..|+.+..+  .+...|.|.+
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~   85 (115)
T d1f3dh1           6 QSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNS   85 (115)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeee
Confidence            34455688999999999998753  345789873  221      11 1          135555543  3346799999


Q ss_pred             CCCCCCeEEEEEE
Q psy1095         128 VTLEDAGLYTIKV  140 (325)
Q Consensus       128 ~~~~d~G~Y~C~~  140 (325)
                      ++.+|++.|.|..
T Consensus        86 l~~eDtAvYYCAr   98 (115)
T d1f3dh1          86 LTFEDSAVYYCAN   98 (115)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCcCCcEEEEEec
Confidence            9999999999954

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.79  E-value=5.6e-05  Score=49.94  Aligned_cols=72  Identities=19%  Similarity=0.419  Sum_probs=50.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|++++|.|.+.|..  ...+.|+|.  |+.+      . .          ..|+.+..+  .+...|.|.
T Consensus         5 ~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~   84 (120)
T d1pg7x1           5 QQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELV   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccc
Confidence            345555688999999999998754  346789873  2211      1 0          235655543  345679999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy1095         127 EVTLEDAGLYTIKVE  141 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~  141 (325)
                      +++.+|++.|.|...
T Consensus        85 ~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          85 RLTSNDSAVYYCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEeeec
Confidence            999999999999753

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.79  E-value=9.2e-05  Score=49.57  Aligned_cols=74  Identities=27%  Similarity=0.302  Sum_probs=51.5

Q ss_pred             ecCCcEEEEEEEEecCCC--CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         177 CDGDSVTFECQVQVVPPN--DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       177 ~~g~~v~l~C~~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ..++.++|.|.+.++.+.  ...+.|++++..+......... ...+..+...+.|.|..-.......|+|.|.+..
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~-~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHR-EDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCE-EECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccE-ECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            457889999999987552  3688999999887654433322 2334455566778876655455568999999865

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.1e-05  Score=50.40  Aligned_cols=83  Identities=13%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcE--EEEecCCe----EEEEEccCCCCCCeE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARV--TIREKEDL----RFLEISEVTLEDAGL  135 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~--~~~~~~~~----~~l~i~~~~~~d~G~  135 (325)
                      .+|.+.+.+....-..++.++|.|.+.+ +| ...|+|+++|..+......  .....++.    ..|.|..........
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            4676665443322234677999999998 44 3478999999987643211  11122222    234443333223457


Q ss_pred             EEEEEEeCCee
Q psy1095         136 YTIKVENNYGS  146 (325)
Q Consensus       136 Y~C~~~~~~~~  146 (325)
                      |+|.+.+....
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1rzfl2          84 YSCQVTHEGST   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999887543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.77  E-value=3.3e-05  Score=51.29  Aligned_cols=76  Identities=14%  Similarity=0.259  Sum_probs=45.9

Q ss_pred             CeeEecCCcEEEEEEEEecCCCC--CeeEEee--CCEEec------cC------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPND--HDISWFR--NNRLIK------LD------SDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~--~~~~W~~--~~~~~~------~~------~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ...+.+|+.++|.|.++|+.-..  ..+.|+|  .++.+.      ..      +..+.+++...+.......|.|.+++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            45678899999999998765321  3467986  222211      11      11111111111111234679999999


Q ss_pred             CCCCeEEEEEEE
Q psy1095         237 PEDEGEFTCRVA  248 (325)
Q Consensus       237 ~~d~G~Y~C~~~  248 (325)
                      .+|++.|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (123)
T d1r0ah1          89 TADTAIYYCAQS  100 (123)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEeeccc
Confidence            999999999754

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.77  E-value=3.7e-05  Score=51.45  Aligned_cols=74  Identities=15%  Similarity=0.255  Sum_probs=45.0

Q ss_pred             CeeEecCCcEEEEEEEEecCCCC--CeeEEeeC--CEEec------cC------CC--CceEEEecCCcceeEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPND--HDISWFRN--NRLIK------LD------SD--MKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~--~~~~W~~~--~~~~~------~~------~~--~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ...+.+|+.+.|.|.++|+....  ..+.|+|.  ++.+.      .+      +.  .++....+  .......|.|.+
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d--~s~~t~~L~i~~   86 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKD--TSSNQVFLKITS   86 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEE--TTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecc--cCCcEEEcceec
Confidence            44678899999999999765321  24568762  22111      11      11  11221111  111346799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         235 VYPEDEGEFTCRVA  248 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~  248 (325)
                      ++.+|++.|.|...
T Consensus        87 l~~eDtAvYyCAr~  100 (126)
T d1etzb1          87 VDTSDTATYHCARR  100 (126)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccccceEEEEEe
Confidence            99999999999753

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.77  E-value=3.8e-05  Score=49.25  Aligned_cols=75  Identities=15%  Similarity=0.311  Sum_probs=44.7

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEe-cCCC-eeEEeeCCeeCCCCCcEE-EEecCCe----EEEEEccCCCCCCeEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTG-QPAP-WTSWSKDGKPATPNARVT-IREKEDL----RFLEISEVTLEDAGLYT  137 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~-~~~~~~~----~~l~i~~~~~~d~G~Y~  137 (325)
                      +|.+.+.+.+  ...++.++|.|.+.| +|.. .|+|++++..+....... ....++.    ..|.+.   .++...|+
T Consensus         3 ~P~V~l~~~~--~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~yt   77 (96)
T d2h26a1           3 KPEAWLSSGP--SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLS   77 (96)
T ss_dssp             CCEEEEEEES--CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEE
T ss_pred             CCEEEEEcCC--CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEE
Confidence            4555544333  234568999999998 5654 789999998775432111 1122222    224443   34555799


Q ss_pred             EEEEeCC
Q psy1095         138 IKVENNY  144 (325)
Q Consensus       138 C~~~~~~  144 (325)
                      |.+.+..
T Consensus        78 C~V~H~s   84 (96)
T d2h26a1          78 CRVKHSS   84 (96)
T ss_dssp             EEEEEGG
T ss_pred             EEEEeCC
Confidence            9997754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.77  E-value=6.3e-05  Score=49.20  Aligned_cols=71  Identities=20%  Similarity=0.353  Sum_probs=49.4

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Ce------eCCC-----------CCcEEEEecC--CeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GK------PATP-----------NARVTIREKE--DLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~------~~~~-----------~~~~~~~~~~--~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+      .+..           ..|+.+..++  +...|.+.
T Consensus         5 ~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~   84 (118)
T d1nlbh1           5 VQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQIN   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeee
Confidence            344555688999999999998754  345789873  22      1111           2366665443  45679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          85 SLKNEDTATYFCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ecccCcceEEEEee
Confidence            99999999999953

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.77  E-value=6.3e-05  Score=49.57  Aligned_cols=72  Identities=18%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      +. .          ..|+.+..+  .+...|.+.
T Consensus         6 ~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~   85 (122)
T d1vgeh1           6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (122)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccc
Confidence            446667789999999999998754  335789873  211      11 1          246666554  335579999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy1095         127 EVTLEDAGLYTIKVE  141 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~  141 (325)
                      +++.+|++.|.|...
T Consensus        86 ~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          86 SLRPEDTAVYYCARD  100 (122)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.76  E-value=4.6e-05  Score=50.54  Aligned_cols=74  Identities=15%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec-----c-------CC-CCceEEEecCCcceeEEEEEeCC
Q psy1095         170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK-----L-------DS-DMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~-----~-------~~-~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      .+....+.+|+.++|.|..... .  ..+.|++.  ++.+.     .       .. ...... ..  .......|.|.+
T Consensus         5 ~P~~~~~~~G~svtl~C~~s~~-~--~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~L~I~~   78 (112)
T d2bnub1           5 TPKFQVLKTGQSMTLQCAQDMN-H--EYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNV-SR--STTEDFPLRLLS   78 (112)
T ss_dssp             ECSEEEEETTCCEEEEEEESSC-C--SEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEE-CC--SSSSBCCEEESS
T ss_pred             CCCeEEECCCCCEEEEEEEECC-c--cceEecccccccCccceeeEeccCceecCccccceeE-ec--CCCCEEEEEECC
Confidence            3445568899999999987532 2  67999972  22110     0       00 000000 00  111235799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      +..+|+|.|.|.+..
T Consensus        79 ~~~~DsavYyCA~~~   93 (112)
T d2bnub1          79 AAPSQTSVYFCASSY   93 (112)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCHHHCEEEEEeecC
Confidence            999999999998754

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.76  E-value=6.4e-05  Score=49.93  Aligned_cols=77  Identities=14%  Similarity=0.261  Sum_probs=46.5

Q ss_pred             eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec---c--CCC--------CceEEEecCCcceeEEEEEe
Q psy1095         168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK---L--DSD--------MKPEVQVDSKENLVIARLKI  232 (325)
Q Consensus       168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~---~--~~~--------~~~~~~~~~~~~~~~~~l~i  232 (325)
                      ...+....+.+|+.++|.|.... ..  ..+.|++.  |..+.   .  ...        ........   ......|.|
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~-~~--~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i   77 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDM-DH--ENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSRE---KKERFSLIL   77 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESS-CC--SEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECS---STTBCEEEE
T ss_pred             EccCCEEEECCCCCEEEEEEEcC-Cc--cEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEec---cCcEeeeEe
Confidence            34445567889999999997632 22  57889972  22111   0  000        00110000   112357999


Q ss_pred             CCCCCCCCeEEEEEEEeC
Q psy1095         233 PHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       233 ~~~~~~d~G~Y~C~~~~~  250 (325)
                      .+++.+|+|.|.|.+...
T Consensus        78 ~~~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          78 ESASTNQTSMYLCASSST   95 (113)
T ss_dssp             SSCCGGGCEEEEEEEECT
T ss_pred             ccCccCCcccEEeeEccC
Confidence            999999999999987643

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=6.3e-05  Score=49.13  Aligned_cols=70  Identities=23%  Similarity=0.462  Sum_probs=49.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEeeC--CeeC------C----------CCCcEEEEec--CCeEEEEEccC
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPA--PWTSWSKD--GKPA------T----------PNARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~--~~v~W~~~--~~~~------~----------~~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      +.....+.+|+++.|.|.+.|...  -.+.|+|.  |+.+      .          -..|+.+..+  .+...|.+.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL   85 (117)
T d1c5db1           6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (117)
T ss_dssp             EECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccc
Confidence            344556889999999999988543  35789873  2221      1          1246666654  33567999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         129 TLEDAGLYTIKV  140 (325)
Q Consensus       129 ~~~d~G~Y~C~~  140 (325)
                      +.+|++.|.|..
T Consensus        86 ~~eDtAvYYCAr   97 (117)
T d1c5db1          86 QTEDTAIYFCTR   97 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEec
Confidence            999999999953

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.7e-05  Score=51.04  Aligned_cols=77  Identities=12%  Similarity=0.239  Sum_probs=44.8

Q ss_pred             CeeEecCCcEEEEEEEEecCCC-CCeeEEeeC--CEEec-------cCCCCce--EEEecCCcceeEEEEEeCCCCCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPN-DHDISWFRN--NRLIK-------LDSDMKP--EVQVDSKENLVIARLKIPHVYPEDE  240 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~--~~~~~-------~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~  240 (325)
                      ...+.+|+.++|.|........ ...+.|+|.  +....       .......  ..............|.|.+++.+|+
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT   87 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence            3456779999999998543321 135889983  22110       0000000  0000111122467899999999999


Q ss_pred             eEEEEEEEe
Q psy1095         241 GEFTCRVAN  249 (325)
Q Consensus       241 G~Y~C~~~~  249 (325)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (118)
T d1i8lc_          88 GLYICKVEL   96 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEeEec
Confidence            999998754

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.73  E-value=9.1e-05  Score=48.75  Aligned_cols=69  Identities=26%  Similarity=0.374  Sum_probs=49.1

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEeeC--CeeC------CC----------CCcEEEEec--CCeEEEEEccC
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPA--PWTSWSKD--GKPA------TP----------NARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~--~~v~W~~~--~~~~------~~----------~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      ++..-.+.+|+++.|.|.+.|...  -.+.|++.  |+.+      ..          ..++.+..+  .+...|.|.++
T Consensus         6 esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l   85 (120)
T d1dn0b1           6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (120)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccc
Confidence            344556889999999999998653  35689974  2211      11          246766653  33567999999


Q ss_pred             CCCCCeEEEEE
Q psy1095         129 TLEDAGLYTIK  139 (325)
Q Consensus       129 ~~~d~G~Y~C~  139 (325)
                      +.+|++.|.|.
T Consensus        86 ~~eDtA~YYCA   96 (120)
T d1dn0b1          86 TAADTAVYYCA   96 (120)
T ss_dssp             CGGGCEEEEEE
T ss_pred             ccccccEEEEE
Confidence            99999999994

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.73  E-value=3.5e-05  Score=49.58  Aligned_cols=70  Identities=13%  Similarity=0.211  Sum_probs=44.0

Q ss_pred             CCcEEEEEEEEecCCCCCeeEEeeCCEEecc----CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKL----DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      ...++|.|.+.++.|.+..+.|.+|+..+..    ...........+..+...+.|.+..   .+...|+|.+.+..
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~---~~~~~ytC~V~H~s   87 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDG---GLEHVYSCRVKGIA   87 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECT---TCGGGEEEEEEEGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECC---CCCCEEEEEEEeCC
Confidence            3478999999999888799999998765532    1111111112223344455666643   44567999998643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.72  E-value=0.00023  Score=45.33  Aligned_cols=78  Identities=13%  Similarity=0.233  Sum_probs=45.1

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcEE--E-EecCCeE-EEEEccCCCCCCeEEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARVT--I-REKEDLR-FLEISEVTLEDAGLYTI  138 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~--~-~~~~~~~-~l~i~~~~~~d~G~Y~C  138 (325)
                      ||.+.+....   ..++.++|.|.+.++ | ...|+|+++|..+.......  . ...++.. ......+...+...|+|
T Consensus         3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC   79 (94)
T d1hyrc1           3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTC   79 (94)
T ss_dssp             CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEE
Confidence            5666543222   235679999999984 5 34789999999876542211  1 1112211 11222333445557999


Q ss_pred             EEEeCCe
Q psy1095         139 KVENNYG  145 (325)
Q Consensus       139 ~~~~~~~  145 (325)
                      .+.+...
T Consensus        80 ~V~H~~~   86 (94)
T d1hyrc1          80 YMEHSGN   86 (94)
T ss_dssp             EEEETTE
T ss_pred             EEEECCC
Confidence            9987654

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=0.00011  Score=46.32  Aligned_cols=74  Identities=18%  Similarity=0.262  Sum_probs=43.9

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcEE--EEecCC----eEEEEEccCCCCCCeEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARVT--IREKED----LRFLEISEVTLEDAGLY  136 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~d~G~Y  136 (325)
                      ||.+.+..   ....++.++|.|.+.++ | ...|+|.++|..+.......  ....++    ...|.+.   ..+...|
T Consensus         3 pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~y   76 (89)
T d2mhaa1           3 SPKAHVTH---HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYY   76 (89)
T ss_dssp             CCEEEECC---EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTC
T ss_pred             CCEeEEEc---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEE
Confidence            56665432   13356789999999984 4 34779999998876432211  111122    1234443   3344479


Q ss_pred             EEEEEeCC
Q psy1095         137 TIKVENNY  144 (325)
Q Consensus       137 ~C~~~~~~  144 (325)
                      +|.+.+..
T Consensus        77 tC~V~H~~   84 (89)
T d2mhaa1          77 TCHVYHQG   84 (89)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEECC
Confidence            99997654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=8.4e-05  Score=47.51  Aligned_cols=78  Identities=17%  Similarity=0.277  Sum_probs=44.6

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcEE--EEecCC-eEEEEEccCCCCCCeEEEE
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARVT--IREKED-LRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~--~~~~~~-~~~l~i~~~~~~d~G~Y~C  138 (325)
                      .||.+.+...+   ..++.++|.|.+.|+ | ...|+|.++|..+.......  ....++ ........+...+...|+|
T Consensus         2 ~PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC   78 (95)
T d1k5na1           2 DPPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTC   78 (95)
T ss_dssp             BCCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEE
T ss_pred             cCCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEE
Confidence            36666543222   235689999999994 4 34779999998876432111  111121 1112222334455568999


Q ss_pred             EEEeCC
Q psy1095         139 KVENNY  144 (325)
Q Consensus       139 ~~~~~~  144 (325)
                      .+.+..
T Consensus        79 ~V~H~~   84 (95)
T d1k5na1          79 HVQHEG   84 (95)
T ss_dssp             EEECTT
T ss_pred             EEEECc
Confidence            998754

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.72  E-value=4.9e-06  Score=54.51  Aligned_cols=77  Identities=17%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEE------eccCCCC-------ceEEEecCCcceeEEEEEeCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRL------IKLDSDM-------KPEVQVDSKENLVIARLKIPHV  235 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~------~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~  235 (325)
                      .....+++|+++.|.|.++|+.-....+.|.|.  |+.      +......       +.+++...+.......|.|.++
T Consensus         7 sG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL   86 (117)
T d1b2wh1           7 SGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSL   86 (117)
T ss_dssp             CCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccc
Confidence            345568899999999999886543366788872  221      1111110       1111122222224567999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         236 YPEDEGEFTCRV  247 (325)
Q Consensus       236 ~~~d~G~Y~C~~  247 (325)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (117)
T d1b2wh1          87 RPEDTAVYYCAR   98 (117)
T ss_dssp             CGGGCEEEECCE
T ss_pred             cCCcceEEEEcc
Confidence            999999999964

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.71  E-value=7.6e-05  Score=48.82  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=49.9

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------CC----------CCcEEEEec--CCeEEEEEccC
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------TP----------NARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~~----------~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      ++....+.+|++++|.|.+.|..  .-.+.|++.  ++.+      ..          ..|+.+..+  .+...|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L   85 (116)
T d7fabh1           6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc
Confidence            44455688999999999998854  346789873  2211      11          235555543  33567999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         129 TLEDAGLYTIKVE  141 (325)
Q Consensus       129 ~~~d~G~Y~C~~~  141 (325)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYyCAr~   98 (116)
T d7fabh1          86 TAADTAVYYCARN   98 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEeeee
Confidence            9999999999653

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=7.5e-05  Score=48.93  Aligned_cols=71  Identities=21%  Similarity=0.471  Sum_probs=49.4

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC---------------CC--CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA---------------TP--NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~---------------~~--~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.+               .+  ..++.+..+  .+...|.|.
T Consensus         5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~   84 (117)
T d1mfah1           5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS   84 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence            455666788999999999998754  345688873  2211               01  235555544  335679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999954

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.71  E-value=4.9e-05  Score=50.49  Aligned_cols=78  Identities=13%  Similarity=0.251  Sum_probs=47.2

Q ss_pred             eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EEec-----cCC--------CCceEEEecCCcceeEEEEE
Q psy1095         167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RLIK-----LDS--------DMKPEVQVDSKENLVIARLK  231 (325)
Q Consensus       167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~~~-----~~~--------~~~~~~~~~~~~~~~~~~l~  231 (325)
                      +...+....+.+|+.++|.|..... .  ..+.|++..  ..+.     .+.        ..+.....   .......|.
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~   77 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-H--SNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ---FDDYHSEMN   77 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-C--CEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEE---CTTSCEEEE
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-C--CEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEc---CCCCeEEEE
Confidence            3444556678899999999975432 2  579999732  1110     000        00000000   011346899


Q ss_pred             eCCCCCCCCeEEEEEEEeC
Q psy1095         232 IPHVYPEDEGEFTCRVANE  250 (325)
Q Consensus       232 i~~~~~~d~G~Y~C~~~~~  250 (325)
                      |.++..+|+|.|.|.+...
T Consensus        78 I~~~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          78 MSALELEDSAMYFCASSLR   96 (113)
T ss_dssp             CCSCCGGGCEEECEEEESS
T ss_pred             ecccCcCCceeEEEEeecC
Confidence            9999999999999987543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=0.0002  Score=46.71  Aligned_cols=71  Identities=20%  Similarity=0.543  Sum_probs=49.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------C---------CC--CCcEEEEecC--CeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------A---------TP--NARVTIREKE--DLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~---------~~--~~~~~~~~~~--~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.++|..  .-.+.|+|.  |+.      +         .+  ..|+.+..++  +...|.+.
T Consensus         5 ~esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~   84 (117)
T d1jnhb1           5 QQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLN   84 (117)
T ss_dssp             EECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccc
Confidence            344556688999999999999854  345689873  211      1         11  2466666543  35679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          85 SLTSEDSAVYSCSR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999954

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.70  E-value=3.7e-05  Score=51.06  Aligned_cols=77  Identities=14%  Similarity=0.328  Sum_probs=45.7

Q ss_pred             CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEe---c--cCCCCce------EEEecCCcceeEEEEEeCCCCC
Q psy1095         171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLI---K--LDSDMKP------EVQVDSKENLVIARLKIPHVYP  237 (325)
Q Consensus       171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~---~--~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~  237 (325)
                      |....+.+|+.++|.|..... .  ..+.|++.  +..+   .  .......      ..... ........|.|.++..
T Consensus         5 P~~~~~~~G~svtL~C~~~~~-~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTMG-H--DKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVS-RIRTEHFPLTLESARP   80 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETTC-C--SEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEEC-CSSSSBCCEEBSSCCT
T ss_pred             CCEEEECCCCCEEEEEEEeCC-c--ccEEEEEEcCCCCcEEeeeeeccCccccccccccceee-cCCCCceEeeeccccc
Confidence            445678899999999986422 2  57999972  2111   0  0000000      00000 0111345799999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy1095         238 EDEGEFTCRVANEL  251 (325)
Q Consensus       238 ~d~G~Y~C~~~~~~  251 (325)
                      +|+|.|.|.+....
T Consensus        81 ~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          81 SHTSQYLCASSENI   94 (112)
T ss_dssp             TTCSEEEEEEECSS
T ss_pred             cccccEEEEEecCC
Confidence            99999999876543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.70  E-value=3e-05  Score=51.64  Aligned_cols=77  Identities=16%  Similarity=0.219  Sum_probs=47.1

Q ss_pred             cCeeEecCCcEEEEEEEEecCCC-CCeeEEee--CCEEec------cCC------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095         172 ENLRCCDGDSVTFECQVQVVPPN-DHDISWFR--NNRLIK------LDS------DMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       172 ~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~--~~~~~~------~~~------~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ....+.+|+.+.|.|.++|+.-. ...+.|+|  .|+.+.      ...      ..+.++....+.......|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~   87 (127)
T d3cx5j1           8 GAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVT   87 (127)
T ss_dssp             ECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccc
Confidence            34567889999999999987542 14678987  233221      111      1110000111111244679999999


Q ss_pred             CCCCeEEEEEEE
Q psy1095         237 PEDEGEFTCRVA  248 (325)
Q Consensus       237 ~~d~G~Y~C~~~  248 (325)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYyCAr~   99 (127)
T d3cx5j1          88 TEDTATYYCARS   99 (127)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEeeee
Confidence            999999999753

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.70  E-value=9e-05  Score=48.48  Aligned_cols=72  Identities=21%  Similarity=0.427  Sum_probs=50.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-----------CCCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-----------PNARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|++|.|.|.+.|..  .-.+.|+|.  |+.      |.           -..|+.+..+  .+...|.|.
T Consensus         5 ~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~   84 (117)
T d1iqdb1           5 VQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELS   84 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeec
Confidence            344556688999999999998854  335689873  221      11           1235665543  335679999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy1095         127 EVTLEDAGLYTIKVE  141 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~  141 (325)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCA~~   99 (117)
T d1iqdb1          85 SLRSDDTAVYYCAVP   99 (117)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCcCcceEEEEeEc
Confidence            999999999999754

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.70  E-value=7.2e-05  Score=49.12  Aligned_cols=70  Identities=21%  Similarity=0.402  Sum_probs=49.1

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCC---eeEEeeC--CeeC------CC----------CCcEEEEec--CCeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPAP---WTSWSKD--GKPA------TP----------NARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~~---~v~W~~~--~~~~------~~----------~~~~~~~~~--~~~~~l~i~~  127 (325)
                      ++.+..+.+|+++.|.|.+.|....   .+.|+|.  |+.+      ..          ..|+.+..+  .+...|.+.+
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~s   85 (119)
T d1ncwh1           6 QSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNS   85 (119)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccc
Confidence            4455568899999999999986542   3689873  3211      00          235666543  3456799999


Q ss_pred             CCCCCCeEEEEEE
Q psy1095         128 VTLEDAGLYTIKV  140 (325)
Q Consensus       128 ~~~~d~G~Y~C~~  140 (325)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (119)
T d1ncwh1          86 VTTEDTATYYCAG   98 (119)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCCceEEEEeE
Confidence            9999999999964

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.70  E-value=0.00017  Score=46.38  Aligned_cols=70  Identities=19%  Similarity=0.445  Sum_probs=49.2

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-----------C--CCcEEEEec--CCeEEEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-----------P--NARVTIREK--EDLRFLEI  125 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-----------~--~~~~~~~~~--~~~~~l~i  125 (325)
                      +.....+.+|+++.|.|.+.|..  .-.+.|++.  ++.      +.           +  ..++.+..+  .+...|.|
T Consensus         6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i   85 (109)
T d2ck0h1           6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQM   85 (109)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecc
Confidence            34456688999999999998754  335788873  211      11           0  136666654  34567999


Q ss_pred             ccCCCCCCeEEEEEE
Q psy1095         126 SEVTLEDAGLYTIKV  140 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~  140 (325)
                      .+++.+|++.|.|.-
T Consensus        86 ~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVR  100 (109)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cCCCHhHCEEEEEEE
Confidence            999999999999964

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.69  E-value=6.4e-05  Score=49.60  Aligned_cols=70  Identities=21%  Similarity=0.336  Sum_probs=48.6

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC----CeeEEeeC--Cee------CCC----------CCcEEEEec--CCeEEEEEc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPA----PWTSWSKD--GKP------ATP----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~----~~v~W~~~--~~~------~~~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      ++....+.+|++++|.|.+.|...    -.+.|+|.  |+.      +..          ..|+.+..+  .+...|.|.
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~   85 (120)
T d1ai1h1           6 ESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLI   85 (120)
T ss_dssp             EECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEES
T ss_pred             eECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeeccee
Confidence            344556889999999999988542    24689874  221      111          136666553  335679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|..
T Consensus        86 sL~~eDtAvYYCAr   99 (120)
T d1ai1h1          86 SVTNEDTAMYYCSR   99 (120)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             eeeccceeEEEEEe
Confidence            99999999999964

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.69  E-value=8.1e-05  Score=48.72  Aligned_cols=71  Identities=20%  Similarity=0.375  Sum_probs=49.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEeeC--Cee------CCC-----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPA--PWTSWSKD--GKP------ATP-----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~--~~v~W~~~--~~~------~~~-----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++.+..+.+|+++.|.|.+.|...  -.+.|+|.  |+.      +..           ..|+.+..+  .+...|.+.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            4456667889999999999988653  35789873  221      111           135555543  345679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999943

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.69  E-value=0.00013  Score=48.36  Aligned_cols=69  Identities=22%  Similarity=0.438  Sum_probs=46.9

Q ss_pred             CCceEecCCCeEEEEEEEEecCC----CeeEEeeC--CeeC-------C-------C--CCcEEEEec--CCeEEEEEcc
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPA----PWTSWSKD--GKPA-------T-------P--NARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~----~~v~W~~~--~~~~-------~-------~--~~~~~~~~~--~~~~~l~i~~  127 (325)
                      +....+.+|++++|.|.+.|...    ..+.|+|.  ++.+       .       +  ..++.+..+  .+...|.|.+
T Consensus         7 sg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~s   86 (123)
T d1r0ah1           7 SGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMT   86 (123)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceee
Confidence            34456788999999999987432    24689873  2211       0       0  135555543  3346799999


Q ss_pred             CCCCCCeEEEEEE
Q psy1095         128 VTLEDAGLYTIKV  140 (325)
Q Consensus       128 ~~~~d~G~Y~C~~  140 (325)
                      ++.+|++.|.|..
T Consensus        87 l~~eDsAvYyCAr   99 (123)
T d1r0ah1          87 VETADTAIYYCAQ   99 (123)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccceEEeecc
Confidence            9999999999964

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.68  E-value=3.4e-05  Score=50.20  Aligned_cols=80  Identities=18%  Similarity=0.363  Sum_probs=44.9

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcE-EEEecCC----eEEEEEccCCCCCCeEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARV-TIREKED----LRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~G~Y~  137 (325)
                      +|.+.+.+.......++.++|.|.+.+ +| ...|+|.++|......... .....++    ...|.|..-.-.....|+
T Consensus         4 ~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~yt   83 (102)
T d1igtb4           4 APQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYS   83 (102)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEE
Confidence            355543332222335788999999988 45 4588999999765432110 0111122    123555433323455899


Q ss_pred             EEEEeCC
Q psy1095         138 IKVENNY  144 (325)
Q Consensus       138 C~~~~~~  144 (325)
                      |.+.+..
T Consensus        84 C~V~H~~   90 (102)
T d1igtb4          84 CSVVHEG   90 (102)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.68  E-value=4.1e-05  Score=51.60  Aligned_cols=75  Identities=16%  Similarity=0.329  Sum_probs=46.2

Q ss_pred             CeeEecCCcEEEEEEEEecCCCC--CeeEEeeC--CEEec------cCC--------CCceEEEecCCcceeEEEEEeCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPND--HDISWFRN--NRLIK------LDS--------DMKPEVQVDSKENLVIARLKIPH  234 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~--~~~~W~~~--~~~~~------~~~--------~~~~~~~~~~~~~~~~~~l~i~~  234 (325)
                      ...+.+|+.+.|.|.++|+....  .-+.|++.  ++.+.      ...        ..++....+.  ......|.|.+
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~--s~~~~~L~i~~   86 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDT--SKNQVVLVMTR   86 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEET--TTTEEEEEECS
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccc--cccEEEccccc
Confidence            45678899999999999865321  35789872  22110      000        0111111111  11346799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         235 VYPEDEGEFTCRVAN  249 (325)
Q Consensus       235 ~~~~d~G~Y~C~~~~  249 (325)
                      ++.+|++.|.|....
T Consensus        87 l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          87 VSPVDTATYFCAHRR  101 (132)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccceEEEEEEec
Confidence            999999999997653

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.68  E-value=0.00011  Score=48.77  Aligned_cols=72  Identities=21%  Similarity=0.427  Sum_probs=50.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCC--eeEEeeC--CeeC---------------CC--CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPAP--WTSWSKD--GKPA---------------TP--NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~~--~v~W~~~--~~~~---------------~~--~~~~~~~~~--~~~~~l~i~  126 (325)
                      .+.....+.+|+++.|.|.+.|....  .+.|+|.  ++.+               .+  ..|+.+..+  .+...|.+.
T Consensus         5 ~esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~   84 (128)
T d2nxyd1           5 VESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELR   84 (128)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeee
Confidence            34455568899999999999986533  4688763  2111               11  246666654  345679999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy1095         127 EVTLEDAGLYTIKVE  141 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~  141 (325)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTA~YYCAr~   99 (128)
T d2nxyd1          85 NLRSDDTAVYFCAGV   99 (128)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eccccCceEEEEeEE
Confidence            999999999999754

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=0.0001  Score=48.24  Aligned_cols=72  Identities=19%  Similarity=0.373  Sum_probs=50.4

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      +. .          ..|+.+..+  .+...|.|.
T Consensus         4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~   83 (117)
T d1um5h1           4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELS   83 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccc
Confidence            345566788999999999998754  345789874  221      11 1          235665543  345679999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy1095         127 EVTLEDAGLYTIKVE  141 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~  141 (325)
                      +++.+|++.|.|...
T Consensus        84 sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          84 SLTSEDSAVYYCARS   98 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=9.5e-05  Score=49.20  Aligned_cols=72  Identities=18%  Similarity=0.465  Sum_probs=50.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|++++|.|.+.|..  .-.+.|+|.  ++.      +. .          ..++.+..+  .+...|.|.
T Consensus         5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~   84 (125)
T d1rihh1           5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN   84 (125)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence            445566788999999999998754  235788873  221      11 1          235656544  345679999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy1095         127 EVTLEDAGLYTIKVE  141 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~  141 (325)
                      +++.+|++.|.|.-.
T Consensus        85 sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          85 SLTSEDSAVYYCARE   99 (125)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeee
Confidence            999999999999643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=7.2e-05  Score=49.06  Aligned_cols=82  Identities=15%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEEEE---ecCCe----EEEEEccCCCCCCe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVTIR---EKEDL----RFLEISEVTLEDAG  134 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~---~~~~~----~~l~i~~~~~~d~G  134 (325)
                      ++|.+.+.+....-..+..++|.|.+.+ +|. ..|+|+++|..+.........   ..++.    ..|.|..-......
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~   83 (107)
T d1mjul2           4 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN   83 (107)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             cCCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCC
Confidence            4566654443322234678999999988 453 589999999887543111111   11221    23444443333355


Q ss_pred             EEEEEEEeCCe
Q psy1095         135 LYTIKVENNYG  145 (325)
Q Consensus       135 ~Y~C~~~~~~~  145 (325)
                      .|+|.+.+...
T Consensus        84 ~ytC~V~H~~~   94 (107)
T d1mjul2          84 SYTCEATHKTS   94 (107)
T ss_dssp             EEEEEEECTTC
T ss_pred             EEEEEEEECCC
Confidence            89999987543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=5e-06  Score=54.61  Aligned_cols=77  Identities=16%  Similarity=0.276  Sum_probs=47.5

Q ss_pred             CeeEecCCcEEEEEEEEecCCCCCeeEEee--CCEEe------ccCCCC------ceEEEecCCcceeEEEEEeCCCCCC
Q psy1095         173 NLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLI------KLDSDM------KPEVQVDSKENLVIARLKIPHVYPE  238 (325)
Q Consensus       173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~--~~~~~------~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~  238 (325)
                      ...+++|+++.|+|.++|+......+.|+|  .|+.+      ......      +.+++...+.......|.|.+++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (116)
T d1fn4b1           9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (116)
T ss_dssp             CSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCC
T ss_pred             CceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCC
Confidence            345778999999999998765546788987  23222      111100      0000011111123467899999999


Q ss_pred             CCeEEEEEEEe
Q psy1095         239 DEGEFTCRVAN  249 (325)
Q Consensus       239 d~G~Y~C~~~~  249 (325)
                      |++.|.|....
T Consensus        89 DTAvYyCAr~~   99 (116)
T d1fn4b1          89 DTGTYYCTRDL   99 (116)
T ss_dssp             CCEEEEEEEEC
T ss_pred             CCEEEEEEeec
Confidence            99999996543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.67  E-value=5.8e-05  Score=49.89  Aligned_cols=70  Identities=20%  Similarity=0.418  Sum_probs=48.2

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C-----------CCCcEEEEec--CCeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T-----------PNARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~  127 (325)
                      ++....+.+|++|+|.|.+.|..  .-.+.|+|.  |+.+      .           -..|+.+..+  .+...|.|.+
T Consensus         6 esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~   85 (119)
T d1qnzh_           6 QSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSR   85 (119)
T ss_dssp             EECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecc
Confidence            34445688999999999988743  335789873  2211      0           0236666543  3456799999


Q ss_pred             CCCCCCeEEEEEE
Q psy1095         128 VTLEDAGLYTIKV  140 (325)
Q Consensus       128 ~~~~d~G~Y~C~~  140 (325)
                      ++.+|++.|.|..
T Consensus        86 L~~eDsAvYYCA~   98 (119)
T d1qnzh_          86 LTSDDSAVYYCAI   98 (119)
T ss_dssp             ECGGGCEEEEEEE
T ss_pred             cCccceeEEEEEE
Confidence            9999999999954

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.67  E-value=0.00011  Score=48.26  Aligned_cols=71  Identities=27%  Similarity=0.487  Sum_probs=49.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++..-.+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      +. .          ..|+.+..+  .+...|.+.
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~   84 (119)
T d1rz7h1           5 VQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELS   84 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeee
Confidence            344556688999999999999854  335789873  211      11 0          236666553  345679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (119)
T d1rz7h1          85 SLRSEDTAVYYCAA   98 (119)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCcccceEEEEee
Confidence            99999999999964

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.67  E-value=9.1e-07  Score=57.21  Aligned_cols=76  Identities=17%  Similarity=0.372  Sum_probs=45.2

Q ss_pred             eeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEec------c--CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIK------L--DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF  243 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~------~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  243 (325)
                      ..|.+|+.|+|.|.... ..  ..+.|++.  +..+.      .  ....................|.|.+++.+|+|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~--~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   79 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SI--NNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASY   79 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CE--EEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCC
T ss_pred             ceECCCCCEEEEEEEeC-Cc--ccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEE
Confidence            45778999999997643 22  57999972  22211      0  0000000001111111335799999999999999


Q ss_pred             EEEEEeCCC
Q psy1095         244 TCRVANELG  252 (325)
Q Consensus       244 ~C~~~~~~~  252 (325)
                      .|.+....+
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            998876544

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=3.7e-05  Score=49.90  Aligned_cols=80  Identities=21%  Similarity=0.366  Sum_probs=46.1

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcEE-EEecCC----eEEEEEccCCCCCCeEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARVT-IREKED----LRFLEISEVTLEDAGLYT  137 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~  137 (325)
                      +|.+.+.+........+.++|.|.+.+ +| ...|+|+++|..+....... ....++    ...|.|..-.......|+
T Consensus         3 ~P~V~i~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~yt   82 (101)
T d1cqka_           3 APQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFT   82 (101)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEE
Confidence            455544333322334678999999998 45 45789999998775321111 112222    123455433333456899


Q ss_pred             EEEEeCC
Q psy1095         138 IKVENNY  144 (325)
Q Consensus       138 C~~~~~~  144 (325)
                      |.+.+..
T Consensus        83 C~V~H~~   89 (101)
T d1cqka_          83 CSVLHEG   89 (101)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9998754

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00011  Score=46.47  Aligned_cols=69  Identities=20%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCee-EEeeCCeeCC-CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPAT-PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p~~~v-~W~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      |+-+.+.+|+++.|.|.++ .|...+ .|..++..+. ....+......+   ++|.++...+.|.|.|.+....
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~G---f~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKG---FIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTE---EEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCC---EEEeCCCcccCeEEEEEEEECC
Confidence            3446688999999999997 465565 4444555544 444555554444   8999999999999999997654

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=4.1e-05  Score=50.44  Aligned_cols=81  Identities=14%  Similarity=0.279  Sum_probs=49.1

Q ss_pred             CCCeeEec-CCceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEE----EE--ecCCe----EEEEEccCCC
Q psy1095          64 SSPRFYAV-PHNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVT----IR--EKEDL----RFLEISEVTL  130 (325)
Q Consensus        64 ~~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~----~~--~~~~~----~~l~i~~~~~  130 (325)
                      .+|.+.+. |....+..++.++|.|.+.+ +|. ..|+|+++|..+.......    ..  ..++.    ..|.|..-..
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w   82 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW   82 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence            46666544 44444667889999999988 453 4899999999876532211    00  11111    2344443333


Q ss_pred             CCCeEEEEEEEeCC
Q psy1095         131 EDAGLYTIKVENNY  144 (325)
Q Consensus       131 ~d~G~Y~C~~~~~~  144 (325)
                      .....|+|.+.+..
T Consensus        83 ~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          83 KKGDTFSCMVGHEA   96 (108)
T ss_dssp             HHTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeCC
Confidence            33568999998754

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=4.6e-05  Score=49.43  Aligned_cols=80  Identities=16%  Similarity=0.180  Sum_probs=45.0

Q ss_pred             CCee-EecCCceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcEEEEecCC---eEEEEEccCCCCCCeEEEE
Q psy1095          65 SPRF-YAVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARVTIREKED---LRFLEISEVTLEDAGLYTI  138 (325)
Q Consensus        65 ~p~~-~~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C  138 (325)
                      +|.+ .+.|... -..++.++|.|.+.+ +| ...|.|.+++.............++.   ...|.|..-.. +.|.|+|
T Consensus         5 aP~V~~l~p~~~-~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC   82 (101)
T d1kcvh2           5 APSVFPLVPGSA-TAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTC   82 (101)
T ss_dssp             CCEEEEECCCSC-CTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEE
T ss_pred             CCEEEeECCCcc-ccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEE
Confidence            4444 3444432 346789999999988 45 45789988775432111111111211   13355544333 4678999


Q ss_pred             EEEeCCee
Q psy1095         139 KVENNYGS  146 (325)
Q Consensus       139 ~~~~~~~~  146 (325)
                      .+.+....
T Consensus        83 ~V~H~~~~   90 (101)
T d1kcvh2          83 LVAHPKSS   90 (101)
T ss_dssp             EEEEGGGT
T ss_pred             EEEeCCCC
Confidence            99876543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.65  E-value=0.00013  Score=47.87  Aligned_cols=71  Identities=17%  Similarity=0.423  Sum_probs=49.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC---------C--CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT---------P--NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      +.         +  ..++.+..+  .+...|.|.
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~   84 (118)
T d1ct8b1           5 LESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFS   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccc
Confidence            345566788999999999998854  345688873  221      10         0  235555543  345679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAr   98 (118)
T d1ct8b1          85 SLTTEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999954

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.65  E-value=0.00011  Score=48.66  Aligned_cols=72  Identities=18%  Similarity=0.429  Sum_probs=49.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|++++|.|.+.|..  ...+.|+|.  |+.+      . .          ..++.+..+  .+...|.|.
T Consensus         5 ~esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~   84 (121)
T d1j05b_           5 QQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLT   84 (121)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccc
Confidence            345556688999999999998744  346789873  2211      0 0          135555543  345679999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy1095         127 EVTLEDAGLYTIKVE  141 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~~  141 (325)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          85 SLTSEDTAVYYCAPF   99 (121)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcCcceEEEeEee
Confidence            999999999999653

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.65  E-value=0.00012  Score=47.60  Aligned_cols=71  Identities=20%  Similarity=0.513  Sum_probs=50.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------C-CC----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------A-TP----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~-~~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      + ..          ..++.+..+  .+...|.+.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~   84 (116)
T d1mjuh1           5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (116)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence            456667789999999999999854  345688873  221      1 11          236666544  345679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          85 SLTSDDSAVYYCAN   98 (116)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEcc
Confidence            99999999999964

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.65  E-value=0.00014  Score=48.11  Aligned_cols=71  Identities=20%  Similarity=0.471  Sum_probs=50.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEeeC--Cee------CC-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPA--PWTSWSKD--GKP------AT-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~--~~v~W~~~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|...  -.+.|+|.  |+.      +. .          ..|+.+..+  .+...|.+.
T Consensus         4 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~   83 (126)
T d1lmka1           4 QQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLS   83 (126)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeec
Confidence            3455667889999999999998543  35688872  211      11 1          246666544  445679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        84 ~L~~eDTAvYYCAr   97 (126)
T d1lmka1          84 SLTSEDSAVYYCAR   97 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999953

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.0002  Score=47.85  Aligned_cols=72  Identities=7%  Similarity=0.180  Sum_probs=41.3

Q ss_pred             eeEecCCcEEEEEEEEecCCCCC-eeEEeeC-CEE---ec--c----------CCCCceEEEecCCcceeEEEEEeCCCC
Q psy1095         174 LRCCDGDSVTFECQVQVVPPNDH-DISWFRN-NRL---IK--L----------DSDMKPEVQVDSKENLVIARLKIPHVY  236 (325)
Q Consensus       174 ~~v~~g~~v~l~C~~~~~~~~~~-~~~W~~~-~~~---~~--~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~  236 (325)
                      ..+..|+.++|.|..+....... .+.|++. +..   +.  .          ..+........+    ....|.|.+++
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l~   85 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGN----ESVTFYLQNLY   85 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECS----SEEEEEEESCC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCC----CeEEEEECCCC
Confidence            34667999999999865432112 2345542 111   10  0          011111111111    34679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy1095         237 PEDEGEFTCRVAN  249 (325)
Q Consensus       237 ~~d~G~Y~C~~~~  249 (325)
                      .+|+|.|.|.+..
T Consensus        86 ~~DsavYyCa~~~   98 (118)
T d1yjdc1          86 VNQTDIYFCKIEV   98 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCeEEEEEEec
Confidence            9999999998754

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.64  E-value=0.00022  Score=47.55  Aligned_cols=71  Identities=21%  Similarity=0.477  Sum_probs=49.5

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CCC-----------CCcEEEEecC--CeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------ATP-----------NARVTIREKE--DLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~~-----------~~~~~~~~~~--~~~~l~i~~  127 (325)
                      +.....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      +..           ..|+.+..+.  +...|.|.+
T Consensus         6 eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~   85 (135)
T d1ieha_           6 ASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNS   85 (135)
T ss_dssp             EECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEES
T ss_pred             eECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEee
Confidence            34455688999999999998854  345789873  221      111           2466666543  346799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         128 VTLEDAGLYTIKVE  141 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~  141 (325)
                      ++.+|++.|.|.-.
T Consensus        86 L~~eDTAvYYCAr~   99 (135)
T d1ieha_          86 LKSEDTAVYYCAKY   99 (135)
T ss_dssp             CCSSSCEEEEEEEB
T ss_pred             eCcccceeeEEEEe
Confidence            99999999999653

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.64  E-value=9.9e-05  Score=48.16  Aligned_cols=71  Identities=20%  Similarity=0.457  Sum_probs=49.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Ce------eCC-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GK------PAT-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~------~~~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .+.....+.+|+++.|.|.+.|..  .-.+.|+|.  ++      .|. .          ..++.+..+  .+...|.+.
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~   84 (117)
T d1jpth1           5 VESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMN   84 (117)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEeccc
Confidence            344556688999999999999854  346788873  21      111 1          245666554  345679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDTAvYYCAr   98 (117)
T d1jpth1          85 SLRAEDTAVYYCAR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEee
Confidence            99999999999954

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=8.8e-05  Score=44.02  Aligned_cols=58  Identities=19%  Similarity=0.301  Sum_probs=39.9

Q ss_pred             cCCCeEEEEEEEEecCCC--eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095          78 DLGDTVRFQCSVTGQPAP--WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN  142 (325)
Q Consensus        78 ~~g~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  142 (325)
                      ..|..+.|+|.....+.+  --.|.|+|+.+......     .....+.|..  .+++|.|.|.+..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-----~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-----CCceEEEEec--CCCCceEEEEEcC
Confidence            458889999999765432  34899999988654211     2223356654  7889999999753

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.62  E-value=0.00015  Score=47.49  Aligned_cols=72  Identities=22%  Similarity=0.473  Sum_probs=50.0

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEeeC--Cee------CC-C----------CCcEEEEecC--CeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPA--PWTSWSKD--GKP------AT-P----------NARVTIREKE--DLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~--~~v~W~~~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~  127 (325)
                      +...-.+.+|+++.|.|.+.|...  -.+.|+|.  |+.      +. .          ..|+.+..++  +...|.+.+
T Consensus         6 eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   85 (118)
T d2fbjh1           6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (118)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccc
Confidence            344556889999999999988643  35688863  211      11 1          2366666543  345699999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         128 VTLEDAGLYTIKVEN  142 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~  142 (325)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (118)
T d2fbjh1          86 VRSEDTALYYCARLH  100 (118)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCCCcceEEEeeEec
Confidence            999999999997544

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.00045  Score=41.44  Aligned_cols=71  Identities=21%  Similarity=0.368  Sum_probs=48.2

Q ss_pred             eEecCCCeEEEEEEEEe-cCCCeeEEeeC-C---eeCCCCCc--EEEEec--CCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095          75 KICDLGDTVRFQCSVTG-QPAPWTSWSKD-G---KPATPNAR--VTIREK--EDLRFLEISEVTLEDAGLYTIKVENNYG  145 (325)
Q Consensus        75 ~~v~~g~~v~l~C~~~~-~p~~~v~W~~~-~---~~~~~~~~--~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  145 (325)
                      .++..|+.+.|.|.+.- .-.|.++|-|- +   .++.-...  ......  -....|.+..+..+|.|.|+|.+.-..+
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            35788999999999975 34678999873 3   23332211  112222  2245688999999999999999865444

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=6e-05  Score=48.96  Aligned_cols=80  Identities=20%  Similarity=0.313  Sum_probs=41.9

Q ss_pred             CCCeeE-ecCCceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcEEEEecCCe----EEEEEccCCCCCCeEE
Q psy1095          64 SSPRFY-AVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARVTIREKEDL----RFLEISEVTLEDAGLY  136 (325)
Q Consensus        64 ~~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y  136 (325)
                      .+|.+. +.|... -..++.++|.|.+.| +| ...|+|.+++............ .++.    ..|.|..... +.+.|
T Consensus         4 s~PsV~~l~p~~~-~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~-~~g~ys~~S~L~v~~~~w-~~~~y   80 (102)
T d1mjuh2           4 TAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTW-PSQSI   80 (102)
T ss_dssp             BCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE-ETTEEEEEEEEEECTTTT-TTSCC
T ss_pred             cCCEEEEECCCcc-ccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEeccccc-CCCCEEEEEEEEEehhHc-CCceE
Confidence            356554 444332 235788999999998 44 3478998766432110000111 1222    2355554443 45789


Q ss_pred             EEEEEeCCee
Q psy1095         137 TIKVENNYGS  146 (325)
Q Consensus       137 ~C~~~~~~~~  146 (325)
                      +|.+.+....
T Consensus        81 tC~V~H~~~~   90 (102)
T d1mjuh2          81 TCNVAHPASS   90 (102)
T ss_dssp             EEEEEEGGGT
T ss_pred             EEEEEECCCC
Confidence            9999876543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.62  E-value=0.0003  Score=45.88  Aligned_cols=71  Identities=18%  Similarity=0.376  Sum_probs=49.0

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C--------C--CCcEEEEec--CCeEEEEEccC
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T--------P--NARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~--------~--~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      ++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.+      .        +  ..|+.+..+  .+...|.+.++
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l   85 (116)
T d1a2yb_           6 ESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSL   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeee
Confidence            34445688999999999999854  345789873  2211      1        1  135555543  34567999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         129 TLEDAGLYTIKVE  141 (325)
Q Consensus       129 ~~~d~G~Y~C~~~  141 (325)
                      +.+|++.|.|.-.
T Consensus        86 ~~eDTAvYYCAr~   98 (116)
T d1a2yb_          86 HTDDTARYYCARE   98 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eeccceEEEEEEe
Confidence            9999999999643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.62  E-value=0.00023  Score=46.19  Aligned_cols=70  Identities=20%  Similarity=0.403  Sum_probs=48.9

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEec--CCeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~~  127 (325)
                      +.....+.+|+++.|.|.+.|..  ...+.|+|.  |+.      +. .          ..|+.+..+  .+...|.|.+
T Consensus         6 eSG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~   85 (114)
T d1indh1           6 ESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNS   85 (114)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeee
Confidence            34455688999999999998754  345689873  211      11 1          236666654  3456799999


Q ss_pred             CCCCCCeEEEEEE
Q psy1095         128 VTLEDAGLYTIKV  140 (325)
Q Consensus       128 ~~~~d~G~Y~C~~  140 (325)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCA~   98 (114)
T d1indh1          86 LRSEDTALYFCAS   98 (114)
T ss_dssp             CCGGGCEEEEEEC
T ss_pred             eccCcccEEEECC
Confidence            9999999999953

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00011  Score=48.11  Aligned_cols=82  Identities=17%  Similarity=0.297  Sum_probs=47.4

Q ss_pred             CCCeeEecCCceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEEEE---ecCCe----EEEEEccCCCCCCe
Q psy1095          64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVTIR---EKEDL----RFLEISEVTLEDAG  134 (325)
Q Consensus        64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~---~~~~~----~~l~i~~~~~~d~G  134 (325)
                      .+|.+.+.+.......++.++|.|.+.+ +|. ..|+|+++|..+.........   ..++.    ..|.|..-......
T Consensus         4 ~~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~   83 (107)
T d1c5cl2           4 AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK   83 (107)
T ss_dssp             BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred             cCCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCC
Confidence            3565554433222234678999999988 453 489999999877543221111   11121    23555444333445


Q ss_pred             EEEEEEEeCCe
Q psy1095         135 LYTIKVENNYG  145 (325)
Q Consensus       135 ~Y~C~~~~~~~  145 (325)
                      .|+|.+.+...
T Consensus        84 ~ytC~V~H~~~   94 (107)
T d1c5cl2          84 VYACEVTHQGL   94 (107)
T ss_dssp             EEEEEEECTTC
T ss_pred             EEEEEEEECCC
Confidence            89999987643

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=7.2e-05  Score=48.70  Aligned_cols=73  Identities=18%  Similarity=0.292  Sum_probs=48.2

Q ss_pred             cCCcEEEEEEEEecCCC--CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095         178 DGDSVTFECQVQVVPPN--DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL  251 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  251 (325)
                      .+..++|.|.+.++.+.  ...+.|.++|..+........ ....+..+...+.|.|..-.....-.|+|.+.+..
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~-~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAP-EKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCC-EECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCc-EECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            46678999999987653  368899999987754432221 12333345556777776554444557999999865

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.61  E-value=0.00017  Score=48.53  Aligned_cols=71  Identities=21%  Similarity=0.361  Sum_probs=48.6

Q ss_pred             CCceEecCCCeEEEEEEEEecC----CCeeEEeeC--CeeC--------------C--CCCcEEEEec--CCeEEEEEcc
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQP----APWTSWSKD--GKPA--------------T--PNARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~~--~~~~--------------~--~~~~~~~~~~--~~~~~l~i~~  127 (325)
                      .....+.+|++++|.|.+.|..    ...+.|+|.  ++.+              .  -..|+.+..+  .+...|.|.+
T Consensus         7 sg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~   86 (132)
T d1tjgh1           7 SGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTR   86 (132)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEccccc
Confidence            3345588899999999998754    225789973  2111              0  0246665543  3346799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         128 VTLEDAGLYTIKVEN  142 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~  142 (325)
                      ++.+|++.|.|....
T Consensus        87 l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          87 VSPVDTATYFCAHRR  101 (132)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccceEEEEEEec
Confidence            999999999997543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.60  E-value=0.00013  Score=47.86  Aligned_cols=71  Identities=18%  Similarity=0.425  Sum_probs=49.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CCC-----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------ATP-----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~~-----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      +..           ..++.+..+  .+...|.|.
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~   84 (119)
T d1eapb1           5 QESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLN   84 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeee
Confidence            445566688999999999998854  335789873  221      111           135655543  334679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (119)
T d1eapb1          85 SLTSEDSAVYFCKR   98 (119)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             cccCCcceEEEEEE
Confidence            99999999999954

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.60  E-value=2.2e-05  Score=52.05  Aligned_cols=72  Identities=21%  Similarity=0.299  Sum_probs=44.2

Q ss_pred             cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      .+..++|.|.+.++.+.+..|.|.+++....   .........++.+...+.|.|..-.......|+|.|.+...
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~---~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   97 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDY---KNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEAL   97 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTE---EEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETTT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCc---EEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            4567899999999887778999988763210   00111112222344556666655443334579999998653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.60  E-value=0.00019  Score=47.11  Aligned_cols=71  Identities=20%  Similarity=0.483  Sum_probs=49.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-----------C--CCcEEEEec--CCeEEEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-----------P--NARVTIREK--EDLRFLEI  125 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-----------~--~~~~~~~~~--~~~~~l~i  125 (325)
                      ++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      +.           +  ..|+.+..+  .+...|.|
T Consensus         6 esG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~   85 (120)
T d1dlfh_           6 ESGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQM   85 (120)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccce
Confidence            34455688999999999998754  346789873  221      11           0  136666554  34567999


Q ss_pred             ccCCCCCCeEEEEEEE
Q psy1095         126 SEVTLEDAGLYTIKVE  141 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~  141 (325)
                      .+++.+|++.|.|...
T Consensus        86 ~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          86 NTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eeccCCCceEEEeeEe
Confidence            9999999999999653

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.59  E-value=0.00015  Score=47.80  Aligned_cols=69  Identities=22%  Similarity=0.466  Sum_probs=48.2

Q ss_pred             CCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CCC-----------CCcEEEEec--CCeEEEEEccC
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------ATP-----------NARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~~-----------~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      ..+..+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      |..           ..|+.+..+  .+...|.|.++
T Consensus         7 sg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL   86 (121)
T d1ol0a_           7 SGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSL   86 (121)
T ss_dssp             EECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeec
Confidence            3445678999999999998754  335688873  221      111           236666554  34567999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         129 TLEDAGLYTIKV  140 (325)
Q Consensus       129 ~~~d~G~Y~C~~  140 (325)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (121)
T d1ol0a_          87 RAEDTAVYYCAR   98 (121)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccceEEEEEE
Confidence            999999999964

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.59  E-value=0.00018  Score=47.52  Aligned_cols=71  Identities=21%  Similarity=0.469  Sum_probs=49.5

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEeeC--Cee------CCC-----------CCcEEEEecC--CeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQPA--PWTSWSKD--GKP------ATP-----------NARVTIREKE--DLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p~--~~v~W~~~--~~~------~~~-----------~~~~~~~~~~--~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|...  -.+.|+|.  |+.      +..           ..|+.+..+.  +...|.+.
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~   84 (124)
T d2b1hh1           5 EQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWS   84 (124)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEES
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeee
Confidence            4455667889999999999998553  34688873  211      110           2466555443  35679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          85 SLKPSDTALYYCAR   98 (124)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccccceEEEEee
Confidence            99999999999953

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.58  E-value=0.0004  Score=46.33  Aligned_cols=68  Identities=22%  Similarity=0.401  Sum_probs=46.8

Q ss_pred             CceEecCCCeEEEEEEEEecC----CCeeEEeeC--CeeC--------------C--CCCcEEEEec--CCeEEEEEccC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQP----APWTSWSKD--GKPA--------------T--PNARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~~--~~~~--------------~--~~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      ....+.+|++++|.|.+.|..    ...+.|+|.  ++.+              .  -..++.+..+  .+...|.|.++
T Consensus         8 G~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l   87 (126)
T d1etzb1           8 GPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSV   87 (126)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecc
Confidence            344678899999999998743    224579863  2211              0  1236666554  33567999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         129 TLEDAGLYTIKV  140 (325)
Q Consensus       129 ~~~d~G~Y~C~~  140 (325)
                      +.+|++.|.|..
T Consensus        88 ~~eDtAvYyCAr   99 (126)
T d1etzb1          88 DTSDTATYHCAR   99 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccccceEEEEE
Confidence            999999999964

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00022  Score=47.01  Aligned_cols=71  Identities=18%  Similarity=0.455  Sum_probs=49.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      +. .          ..|+.+..+  .+...|.+.
T Consensus         5 ~esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~   84 (124)
T d1yedb1           5 QQSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLS   84 (124)
T ss_dssp             EECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEE
T ss_pred             EeeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccc
Confidence            345556688999999999998854  335789873  221      11 1          236666554  345679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDTAvYYCAR   98 (124)
T d1yedb1          85 SLKSEDSAVYFCTR   98 (124)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEecc
Confidence            99999999999964

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.56  E-value=0.00022  Score=47.20  Aligned_cols=69  Identities=23%  Similarity=0.549  Sum_probs=48.7

Q ss_pred             CCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEec--CCeEEEEEccC
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      ...-.+.+|+++.|.|.++|..  .-.+.|+|.  ++.      +. .          ..|+.+..+  .+...|.+.++
T Consensus         6 sG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL   85 (124)
T d1zvya1           6 SGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSV   85 (124)
T ss_dssp             ECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccc
Confidence            3445688999999999998854  346789873  221      11 1          235666544  34567999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         129 TLEDAGLYTIKV  140 (325)
Q Consensus       129 ~~~d~G~Y~C~~  140 (325)
                      +.+|++.|.|..
T Consensus        86 ~~eDtAvYYCAr   97 (124)
T d1zvya1          86 KSEDTAIYTCGA   97 (124)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cCCcceEEEEee
Confidence            999999999965

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=5.2e-05  Score=49.32  Aligned_cols=66  Identities=15%  Similarity=0.376  Sum_probs=40.4

Q ss_pred             CCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcE-EEEecCCe----EEEEEccCCCCCCeEEEEEEEeCC
Q psy1095          79 LGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARV-TIREKEDL----RFLEISEVTLEDAGLYTIKVENNY  144 (325)
Q Consensus        79 ~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~  144 (325)
                      .++.++|.|.+.+ +| ...|+|+++|......... .....++.    ..|.|..-.......|+|.+.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4778999999998 45 3588999999876532111 11122221    235554433334457999998754

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=8.2e-05  Score=48.63  Aligned_cols=77  Identities=16%  Similarity=0.224  Sum_probs=50.8

Q ss_pred             EecCCcEEEEEEEEecCCC--CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095         176 CCDGDSVTFECQVQVVPPN--DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE  253 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  253 (325)
                      +..++.++|.|.+.++.+.  ...+.|.+++..+......... ...+..+...+.|.|..-.......|+|.+.+....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~-~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE-EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCE-ECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcE-ECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            3457889999999987654  3578899999877643322211 233334555677777665444455899999986543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.55  E-value=0.00026  Score=46.52  Aligned_cols=68  Identities=21%  Similarity=0.478  Sum_probs=47.9

Q ss_pred             CceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEecC--CeEEEEEccCC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREKE--DLRFLEISEVT  129 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~~  129 (325)
                      ....+.+|+++.|.|.+.|..  ...+.|+|.  ++.      +. .          ..|+.+..++  +...|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~   87 (121)
T d2p49b1           8 GGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK   87 (121)
T ss_dssp             ECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc
Confidence            445678999999999998754  345689873  221      10 1          2366666543  34579999999


Q ss_pred             CCCCeEEEEEE
Q psy1095         130 LEDAGLYTIKV  140 (325)
Q Consensus       130 ~~d~G~Y~C~~  140 (325)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (121)
T d2p49b1          88 PEDTATYYCAA   98 (121)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccceeEEeeec
Confidence            99999999964

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.55  E-value=0.00016  Score=48.17  Aligned_cols=73  Identities=16%  Similarity=0.375  Sum_probs=50.7

Q ss_pred             EecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C-----------CCCcEEEEecC--CeEEEEE
Q psy1095          69 YAVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T-----------PNARVTIREKE--DLRFLEI  125 (325)
Q Consensus        69 ~~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~-----------~~~~~~~~~~~--~~~~l~i  125 (325)
                      ..++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.+      .           -..|+.+..++  +...|.+
T Consensus         3 L~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~   82 (130)
T d1rhhb1           3 LEQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMEL   82 (130)
T ss_dssp             EEECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEe
Confidence            3455566688999999999998754  345788873  2211      0           02366666543  3466999


Q ss_pred             ccCCCCCCeEEEEEEE
Q psy1095         126 SEVTLEDAGLYTIKVE  141 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~~  141 (325)
                      .+++.+|++.|.|.-.
T Consensus        83 ~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          83 TNLRSDDTAVYYCARD   98 (130)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccCCCCcEEEEEEee
Confidence            9999999999999653

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.54  E-value=0.0002  Score=47.42  Aligned_cols=69  Identities=22%  Similarity=0.446  Sum_probs=48.3

Q ss_pred             CCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC-C----------CCcEEEEecC--CeEEEEEccC
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT-P----------NARVTIREKE--DLRFLEISEV  128 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~-~----------~~~~~~~~~~--~~~~l~i~~~  128 (325)
                      ...-.+.+|+++.|.|.+.|..  .-.+.|+|.  ++.      +. .          ..|+.+..++  +...|.+.++
T Consensus         7 Sg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L   86 (126)
T d1dfbh1           7 SGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSL   86 (126)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeee
Confidence            3445688999999999998754  335789873  211      11 1          2356665543  4567999999


Q ss_pred             CCCCCeEEEEEE
Q psy1095         129 TLEDAGLYTIKV  140 (325)
Q Consensus       129 ~~~d~G~Y~C~~  140 (325)
                      +.+|++.|.|..
T Consensus        87 ~~eDtavYYCAr   98 (126)
T d1dfbh1          87 RAEDMALYYCVK   98 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEEe
Confidence            999999999964

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00023  Score=46.30  Aligned_cols=85  Identities=14%  Similarity=0.179  Sum_probs=45.7

Q ss_pred             CCee-EecCCceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCc--EEEEecCCe----EEEEEccCCCC--CC
Q psy1095          65 SPRF-YAVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNAR--VTIREKEDL----RFLEISEVTLE--DA  133 (325)
Q Consensus        65 ~p~~-~~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~--d~  133 (325)
                      +|.+ .+.|........+.++|.|.+.+ +| ...|+|.+++..+.....  .... .++.    ..|.|....-.  ..
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~-~~gtys~~S~L~v~~~eW~~~~~   83 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVL-RGGKYAATSQVLLPSKDVMAGTD   83 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEE-ETTEEEEEEEEEECTTCC---CC
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEc-cCCCEEEEEEEEEcHHHhccCCC
Confidence            4554 44454444445678999999998 45 357899998876543210  0111 2222    23455433322  22


Q ss_pred             eEEEEEEEeCCeeEEEE
Q psy1095         134 GLYTIKVENNYGSVEAT  150 (325)
Q Consensus       134 G~Y~C~~~~~~~~~~~~  150 (325)
                      ..|+|.+.+..+.....
T Consensus        84 ~~ytC~V~H~~~~~~~~  100 (105)
T d1dn0b2          84 EHVVCKVQHPNGNKEKN  100 (105)
T ss_dssp             CEEEEEEECTTCCEEEE
T ss_pred             CEEEEEEEECCCCEEeE
Confidence            47999998876654433

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=8.9e-05  Score=48.24  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             EecCCcEEEEEEEEecCCCC--CeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         176 CCDGDSVTFECQVQVVPPND--HDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       176 v~~g~~v~l~C~~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      +..+..++|.|.+.++.+..  ..+.|++++....... ........+..+...+.|.|..-.......|+|.+.+...
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~-~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l   90 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHS-TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL   90 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCC-EEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSC
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccE-EcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence            44577889999999976542  4677888877654332 2222223333445566777765444446689999998643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.52  E-value=0.00022  Score=47.17  Aligned_cols=70  Identities=20%  Similarity=0.456  Sum_probs=48.9

Q ss_pred             CCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CC---------C--CCcEEEEec--CCeEEEEEccC
Q psy1095          72 PHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------AT---------P--NARVTIREK--EDLRFLEISEV  128 (325)
Q Consensus        72 ~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~  128 (325)
                      ...-.+.+|+++.|.|.+.|..  ...+.|+|.  ++.      +.         +  ..|+.+..+  .+...|.|.++
T Consensus         7 SG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL   86 (125)
T d1op3h1           7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (125)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeecc
Confidence            3445688899999999998744  345788873  211      11         1  236666654  34567999999


Q ss_pred             CCCCCeEEEEEEE
Q psy1095         129 TLEDAGLYTIKVE  141 (325)
Q Consensus       129 ~~~d~G~Y~C~~~  141 (325)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (125)
T d1op3h1          87 RVEDTAIYYCARK   99 (125)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCccceeEeEeec
Confidence            9999999999653

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.51  E-value=0.00015  Score=48.25  Aligned_cols=71  Identities=20%  Similarity=0.417  Sum_probs=49.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C-C----------CCcEEEEecC--CeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T-P----------NARVTIREKE--DLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~-~----------~~~~~~~~~~--~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  ...+.|++.  ++.+      . .          ..|+.+..++  +...|.+.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~   84 (130)
T d1rzga1           5 VQSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS   84 (130)
T ss_dssp             EECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence            345556688999999999998754  345789873  2211      1 1          1356565543  35568999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDtA~YYCAr   98 (130)
T d1rzga1          85 SLRSEDTAVFYCAS   98 (130)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ecCCCccEEEEEEE
Confidence            99999999999964

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.51  E-value=0.00012  Score=45.58  Aligned_cols=65  Identities=15%  Similarity=0.218  Sum_probs=41.3

Q ss_pred             CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095         180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG  252 (325)
Q Consensus       180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  252 (325)
                      ..++|.|.+.++.|....+.|.++|..+.....  .. ...+..+...+.+   .+...  ..|+|.+.+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~--~~-~~~~gtys~~s~~---~~~~~--~~yTC~V~H~~~   78 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPA--IV-ISPSGKYNAVKLG---KYEDS--NSVTCSVQHDNK   78 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCE--EE-ECTTSSEEEEEEE---EETTT--TTCEEEEEETTE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEE--ee-eccCCcEEEEEEE---ecCCC--CEEEEEEEECCc
Confidence            457899999998887789999999987654321  11 1222233333333   33333  369999998643

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.50  E-value=0.00023  Score=46.88  Aligned_cols=70  Identities=23%  Similarity=0.525  Sum_probs=48.8

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C-----------C--CCcEEEEec--CCeEEEEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T-----------P--NARVTIREK--EDLRFLEI  125 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~-----------~--~~~~~~~~~--~~~~~l~i  125 (325)
                      +...-.+.+|+++.|.|.+.|..  .-.+.|+|.  |+.+      .           +  ..|+.+..+  .+...|.+
T Consensus         6 esg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~   85 (122)
T d1q9rb1           6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM   85 (122)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccce
Confidence            34445688999999999998754  335789873  2211      1           0  136666544  33467999


Q ss_pred             ccCCCCCCeEEEEEE
Q psy1095         126 SEVTLEDAGLYTIKV  140 (325)
Q Consensus       126 ~~~~~~d~G~Y~C~~  140 (325)
                      .+++.+|++.|.|..
T Consensus        86 ~sL~~eDTAvYYCar  100 (122)
T d1q9rb1          86 NTLRAEDSATYYCAR  100 (122)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             eeeccCcceEEEEEe
Confidence            999999999999975

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.49  E-value=0.00028  Score=46.76  Aligned_cols=71  Identities=23%  Similarity=0.419  Sum_probs=49.3

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C-----------CCCcEEEEecC--CeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T-----------PNARVTIREKE--DLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~-----------~~~~~~~~~~~--~~~~l~i~~  127 (325)
                      ++....+.+|+++.|+|.+.|..  .-.+.|+|.  |+.+      .           -..|+.+..+.  +...|.+.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~s   85 (127)
T d2fx7h1           6 QSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecc
Confidence            44455688899999999998854  335788863  2211      0           02466665543  456799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         128 VTLEDAGLYTIKVE  141 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~  141 (325)
                      ++.+|++.|.|.-.
T Consensus        86 L~~eDTavYYCAR~   99 (127)
T d2fx7h1          86 LRPEDTAVYYCARE   99 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcccceEEEEeec
Confidence            99999999999643

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.49  E-value=0.00033  Score=46.02  Aligned_cols=69  Identities=22%  Similarity=0.454  Sum_probs=48.5

Q ss_pred             CceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CCC----------CCcEEEEec--CCeEEEEEccCCC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------ATP----------NARVTIREK--EDLRFLEISEVTL  130 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~~----------~~~~~~~~~--~~~~~l~i~~~~~  130 (325)
                      ..-.+.+|+++.|.|.+.|..  ...+.|+|.  |+.      +..          ..|+.+..+  .+...|.|.+++.
T Consensus         7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            345688999999999998854  335689874  211      111          136666654  3356799999999


Q ss_pred             CCCeEEEEEEE
Q psy1095         131 EDAGLYTIKVE  141 (325)
Q Consensus       131 ~d~G~Y~C~~~  141 (325)
                      +|++.|.|...
T Consensus        87 eDtA~YYCAr~   97 (119)
T d1kxvc_          87 DDTAMYYCKPS   97 (119)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCcceEeeeec
Confidence            99999999653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=8.1e-05  Score=48.35  Aligned_cols=80  Identities=20%  Similarity=0.362  Sum_probs=45.4

Q ss_pred             CCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCcEE-EEecCCe----EEEEEccCCCCCCeEEE
Q psy1095          65 SPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNARVT-IREKEDL----RFLEISEVTLEDAGLYT  137 (325)
Q Consensus        65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~-~~~~~~~----~~l~i~~~~~~d~G~Y~  137 (325)
                      .|.+.+.+.+......+.++|.|.+.+. | ...|+|+++|.++....... ....++.    ..|.|..........|+
T Consensus         4 ~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~yt   83 (102)
T d1i1ca2           4 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFT   83 (102)
T ss_dssp             CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEE
Confidence            3555443332222235789999999884 4 35789999998765321111 1112222    22455444334455899


Q ss_pred             EEEEeCC
Q psy1095         138 IKVENNY  144 (325)
Q Consensus       138 C~~~~~~  144 (325)
                      |.+.+..
T Consensus        84 C~V~H~~   90 (102)
T d1i1ca2          84 CSVLHEG   90 (102)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.48  E-value=0.00022  Score=47.20  Aligned_cols=70  Identities=19%  Similarity=0.433  Sum_probs=49.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CCC-----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------ATP-----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~~-----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .++....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      +..           ..++.+..+  .+...|.+.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~   84 (127)
T d1n0xh1           5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence            455666789999999999999854  335689873  221      111           235666554  345679999


Q ss_pred             cCCCCCCeEEEEE
Q psy1095         127 EVTLEDAGLYTIK  139 (325)
Q Consensus       127 ~~~~~d~G~Y~C~  139 (325)
                      +++.+|++.|.|.
T Consensus        85 ~L~~eDtAvYYCA   97 (127)
T d1n0xh1          85 SLRSADTAVYYCA   97 (127)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             ccCCCCceEEEEE
Confidence            9999999999995

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.48  E-value=0.00019  Score=47.73  Aligned_cols=68  Identities=21%  Similarity=0.477  Sum_probs=46.7

Q ss_pred             CceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C-C----------CCcEEEEecC--CeEEEEEccCC
Q psy1095          73 HNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T-P----------NARVTIREKE--DLRFLEISEVT  129 (325)
Q Consensus        73 ~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~-~----------~~~~~~~~~~--~~~~l~i~~~~  129 (325)
                      ..-.+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      . .          ..++.+..++  +...|.|.+++
T Consensus         7 G~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~   86 (126)
T d1rjca1           7 GGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLK   86 (126)
T ss_dssp             CCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccC
Confidence            344578899999999998754  345689873  2211      1 1          1366665543  34569999999


Q ss_pred             CCCCeEEEEEE
Q psy1095         130 LEDAGLYTIKV  140 (325)
Q Consensus       130 ~~d~G~Y~C~~  140 (325)
                      .+|++.|.|..
T Consensus        87 ~eDTAvYYCAr   97 (126)
T d1rjca1          87 PEDTAMYYCAA   97 (126)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccCceeEEEe
Confidence            99999999965

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.48  E-value=0.0002  Score=47.17  Aligned_cols=72  Identities=19%  Similarity=0.414  Sum_probs=49.3

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee------CCC-----------CCcEEEEec--CCeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP------ATP-----------NARVTIREK--EDLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~------~~~-----------~~~~~~~~~--~~~~~l~i~~  127 (325)
                      +.....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.      |..           ..|+.+..+  .+...|.|.+
T Consensus         6 esG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~   85 (123)
T d1mqkh_           6 ESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSS   85 (123)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceee
Confidence            33445688999999999998754  335689873  221      111           235666543  3356799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy1095         128 VTLEDAGLYTIKVEN  142 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~~  142 (325)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          86 LKSEDTAMYYCVRHE  100 (123)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             eccCcccceeEEecC
Confidence            999999999996543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.46  E-value=0.0003  Score=46.07  Aligned_cols=71  Identities=18%  Similarity=0.428  Sum_probs=49.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--CeeC------C-C----------CCcEEEEec--CCeEEEEEc
Q psy1095          70 AVPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKPA------T-P----------NARVTIREK--EDLRFLEIS  126 (325)
Q Consensus        70 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~-~----------~~~~~~~~~--~~~~~l~i~  126 (325)
                      .+.....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.+      . .          ..|+.+..+  .+...|.+.
T Consensus         5 ~esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~   84 (120)
T d1ad9b1           5 VQSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELS   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccc
Confidence            345556688999999999998754  335788873  2111      1 1          245655543  345679999


Q ss_pred             cCCCCCCeEEEEEE
Q psy1095         127 EVTLEDAGLYTIKV  140 (325)
Q Consensus       127 ~~~~~d~G~Y~C~~  140 (325)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDTAvYYCAr   98 (120)
T d1ad9b1          85 SLRSEDTAFYFCAR   98 (120)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEEE
Confidence            99999999999964

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.45  E-value=0.00019  Score=47.92  Aligned_cols=71  Identities=17%  Similarity=0.413  Sum_probs=48.9

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEeeC--Cee---C--------C-----------CCCcEEEEec--CCeEE
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKD--GKP---A--------T-----------PNARVTIREK--EDLRF  122 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~--~~~---~--------~-----------~~~~~~~~~~--~~~~~  122 (325)
                      +...-.+.+|+++.|.|.+.|..  .-.+.|+|.  ++.   +        .           -..++.+..+  .....
T Consensus         6 esG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~   85 (127)
T d1i3ua_           6 ESGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVN   85 (127)
T ss_dssp             EESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEE
T ss_pred             eECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEE
Confidence            34455678999999999998754  345789874  211   0        0           0135555543  34567


Q ss_pred             EEEccCCCCCCeEEEEEEE
Q psy1095         123 LEISEVTLEDAGLYTIKVE  141 (325)
Q Consensus       123 l~i~~~~~~d~G~Y~C~~~  141 (325)
                      |.|.+++.+|++.|.|...
T Consensus        86 L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          86 LQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             EeeecccccceeEEEEEEE
Confidence            9999999999999999753

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.44  E-value=0.00033  Score=46.75  Aligned_cols=71  Identities=21%  Similarity=0.411  Sum_probs=49.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEeeC--Cee------C---------C--CCCcEEEEecC--CeEEEEEcc
Q psy1095          71 VPHNKICDLGDTVRFQCSVTGQPA--PWTSWSKD--GKP------A---------T--PNARVTIREKE--DLRFLEISE  127 (325)
Q Consensus        71 ~~~~~~v~~g~~v~l~C~~~~~p~--~~v~W~~~--~~~------~---------~--~~~~~~~~~~~--~~~~l~i~~  127 (325)
                      +.....+.+|+++.|.|.+.|...  -.+.|+|.  ++.      +         .  -..|+.+..++  +...|.+.+
T Consensus         5 esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~   84 (133)
T d1rzfh1           5 QSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRG   84 (133)
T ss_dssp             ECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeecc
Confidence            444556889999999999987543  34688873  211      1         0  12466666543  456799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy1095         128 VTLEDAGLYTIKVE  141 (325)
Q Consensus       128 ~~~~d~G~Y~C~~~  141 (325)
                      ++.+|++.|.|...
T Consensus        85 L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          85 LRSDDTAVYYCASN   98 (133)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCCCCCEEEEeeec
Confidence            99999999999653