Psyllid ID: psy10992

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSILLNKEMKTQLHFKFSCSLHSSGGTCRTNNATTLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAKAAQ
Secondary Structure (PSIPRED)
ccHHccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHcHHHHcEEEEEEcccccccccEEEEccccccccccccccccHHHccHHHHHccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEccccccHHHccHHHHHHHccccHHHHHHHHcHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MSILLNKEMKTQLHFkfscslhssggtcrtnnattllkspkwastpvlhyhenvidhyenprnvgsldkkdknvgtglvgapacgdvmklqikvddngkiidakfktfgcgsaiassslATEWVKGKTVDEALKLKNTdiakelclppvklHCSMLAEDAIKAALSDYRIKQNSAKAAQ
Flexible Loop (DISEMBL)
MSILLNKEMKTQLHFKfscslhssggtCRTNNATTLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLvgapacgdvMKLQIKVDDNGKIIDAKFKTFGCGSAIassslatewvkGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAKAAQ
Low Complexity Region (SEG)
MSILLNKEMKTQLHFKFSCSLHSSGGTCRTNNATTLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAKAAQ
Disordered region (IsUnstruct)
***********QLHFKFSCSLHSSGGTCRTNNATTLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDY***********
Disordered Region (DISOPRED)
******************************************ASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALS*************
Disordered Region (DISEMBL)
MSILLNKEMKTQLHFKFSCSLHSSGGTCRTNNATTLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRI*********
Disordered Region (DISPRO)
*SILLNKEMKTQLHFKFSCSLHSSGGTCRTNNATTLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQN******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSILLNKEMKTQLHFKFSCSLHSSGGTCRTNNATTLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAKAAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9D7P6	168	Iron-sulfur cluster assem	yes	N/A	0.860	0.916	0.740	6e-65
Q9H1K1	167	Iron-sulfur cluster assem	yes	N/A	0.860	0.922	0.731	6e-64
O49627	167	Iron-sulfur cluster assem	yes	N/A	0.804	0.862	0.716	3e-56
O81433	171	Iron-sulfur cluster assem	no	N/A	0.703	0.736	0.769	3e-54
Q57074	126	NifU-like protein OS=Haem	yes	N/A	0.698	0.992	0.784	7e-54
Q9ZD61	131	NifU-like protein OS=Rick	yes	N/A	0.720	0.984	0.759	4e-53
Q6CFQ0	181	Iron sulfur cluster assem	yes	N/A	0.865	0.856	0.648	7e-53
P0ACD7	128	NifU-like protein OS=Shig	yes	N/A	0.709	0.992	0.740	2e-52
P0ACD4	128	NifU-like protein OS=Esch	N/A	N/A	0.709	0.992	0.740	2e-52
P0ACD5	128	NifU-like protein OS=Esch	yes	N/A	0.709	0.992	0.740	2e-52

>sp|Q9D7P6|ISCU_MOUSE Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1

 Score =  246 bits (628), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 117/158 (74%), Positives = 132/158 (83%), Gaps = 4/158 (2%)

Query: 23  SSGGTCRTNNATTLLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGL 78
           +  G  R   +  LL+SP+      S P   YH+ V+DHYENPRNVGSLDK  KNVGTGL
Sbjct: 5   TGAGRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGL 64

Query: 79  VGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 138
           VGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +KNT
Sbjct: 65  VGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 124

Query: 139 DIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
           DIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ S K
Sbjct: 125 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKK 162

Involved in the assembly or repair of [Fe-S] clusters that are present in iron-sulfur proteins. Binds iron.
Mus musculus (taxid: 10090)

>sp|Q9H1K1|ISCU_HUMAN Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=2

 Score =  243 bits (619), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 133/160 (83%), Gaps = 6/160 (3%)

Query: 23  SSGGTCRTNNATT--LLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGT 76
           ++ G  R   A +  LL+SP+      S P   YH+ V+DHYENPRNVGSLDK  KNVGT
Sbjct: 2   AAAGAFRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGT 61

Query: 77  GLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK 136
           GLVGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +K
Sbjct: 62  GLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIK 121

Query: 137 NTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
           NTDIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ   K
Sbjct: 122 NTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKK 161

Involved in the assembly or repair of the [Fe-S] clusters present in iron-sulfur proteins. Binds iron.

Homo sapiens (taxid: 9606)

>sp|O49627|ISU1_ARATH Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana GN=ISU1 PE=2 SV=1

 Score =  217 bits (553), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 122/148 (82%), Gaps = 4/148 (2%)

Query: 35  TLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKV 94
           T  +S  W+   +  YHENVIDHY+NPRNVGS DK D NVGTGLVGAPACGDVMKLQIKV
Sbjct: 14  TSRQSTPWSVGILRTYHENVIDHYDNPRNVGSFDKNDPNVGTGLVGAPACGDVMKLQIKV 73

Query: 95  DD-NGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHC 153
           D+  G+I+DA+FKTFGCGSAIASSS+ATEWVKGK +++ L +KNT+IAK L LPPVKLHC
Sbjct: 74  DEKTGQIVDARFKTFGCGSAIASSSVATEWVKGKAMEDVLTIKNTEIAKHLSLPPVKLHC 133

Query: 154 SMLAEDAIKAALSDY---RIKQNSAKAA 178
           SMLAEDAIKAA+ DY   R+K N A AA
Sbjct: 134 SMLAEDAIKAAVKDYKEKRVKTNGAAAA 161

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial iron sulfur proteins. Involved in the assembly or repair of the [Fe-S] clusters present in iron-sulfur proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|O81433|ISU3_ARATH Iron-sulfur cluster assembly protein 3 OS=Arabidopsis thaliana GN=ISU3 PE=2 SV=1

 Score =  210 bits (535), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 97/126 (76%), Positives = 111/126 (88%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           YH NVIDHY+NPRNVGS DK D NVGTGLVGAP CGDVMKLQ+K D +G+IIDAKFKTFG
Sbjct: 28  YHPNVIDHYDNPRNVGSFDKNDPNVGTGLVGAPQCGDVMKLQVKFDGSGQIIDAKFKTFG 87

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
           CGSAIA+SS+ATEWVKGK+V+E L +KN+ IAK L LPPVKLHCSMLAEDAIKAA+ +Y+
Sbjct: 88  CGSAIAASSVATEWVKGKSVEEVLTIKNSQIAKHLSLPPVKLHCSMLAEDAIKAAIKNYK 147

Query: 170 IKQNSA 175
            KQ+ A
Sbjct: 148 EKQDKA 153

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial iron sulfur proteins. Involved in the assembly or repair of the [Fe-S] clusters present in iron-sulfur proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q57074|NIFU_HAEIN NifU-like protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=nifU PE=1 SV=2

 Score =  209 bits (532), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 113/125 (90%)

Query: 48  LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
           + Y E VIDHYENPRNVGSLDKKD NVGTG+VGAPACGDVM+LQIKVDDNG I DAKFKT
Sbjct: 1   MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKT 60

Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
           +GCGSAIASSSL TEWVKGK+++EA  +KN+ IA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61  YGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIAD 120

Query: 168 YRIKQ 172
           Y+ KQ
Sbjct: 121 YKAKQ 125

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|Q9ZD61|NIFU_RICPR NifU-like protein OS=Rickettsia prowazekii (strain Madrid E) GN=nifU PE=3 SV=1

 Score =  207 bits (526), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 115/129 (89%)

Query: 48  LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
           + Y + VIDHYENPRNVGSLDKK KNVGTGLVGAPACGDVMKLQI+V D+  I DAKFKT
Sbjct: 1   MAYSKKVIDHYENPRNVGSLDKKKKNVGTGLVGAPACGDVMKLQIEVGDDEIITDAKFKT 60

Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
           FGCGSAIASSSL TEW+KGK+V++A ++KNT+IAKEL LPPVKLHCS+LAEDAIKAA++D
Sbjct: 61  FGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIAD 120

Query: 168 YRIKQNSAK 176
           Y+ K+ + K
Sbjct: 121 YKQKRENKK 129

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

>sp|Q6CFQ0|ISU1_YARLI Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ISU1 PE=3 SV=1

 Score =  206 bits (524), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/162 (64%), Positives = 123/162 (75%), Gaps = 7/162 (4%)

Query: 17  FSCSLHSSGGTCRTNNATTLLKSPKWASTPVL----HYHENVIDHYENPRNVGSLDKKDK 72
           F+    S+G   R    TT + SP    TP+      YHE V+DHY NPRNVGS++K D+
Sbjct: 3   FNRITRSAGLLARARPTTTAVMSPM---TPLAISRRGYHEKVLDHYNNPRNVGSMNKNDE 59

Query: 73  NVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEA 132
           +VGTGLVGAPACGDVMKLQI+VDDNG I D KFKTFGCGSAIASSS  TE V+GK++ EA
Sbjct: 60  DVGTGLVGAPACGDVMKLQIRVDDNGVIQDVKFKTFGCGSAIASSSYVTELVRGKSLAEA 119

Query: 133 LKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNS 174
            K+KNT IAKEL LPPVKLHCSMLAEDAIK+A+SDY  K+ +
Sbjct: 120 GKIKNTVIAKELSLPPVKLHCSMLAEDAIKSAISDYNSKRKT 161

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial and cytoplasmic iron sulfur proteins. May also be involved in the repair of iron sulfur clusters.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|P0ACD7|NIFU_SHIFL NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 112/127 (88%)

Query: 48  LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
           + Y E VIDHYENPRNVGS D  D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT
Sbjct: 1   MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60

Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
           +GCGSAIASSSL TEWVKGK++DEA  +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120

Query: 168 YRIKQNS 174
           Y+ K+ +
Sbjct: 121 YKSKREA 127

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Shigella flexneri (taxid: 623)

>sp|P0ACD4|NIFU_ECOLI NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 112/127 (88%)

Query: 48  LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
           + Y E VIDHYENPRNVGS D  D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT
Sbjct: 1   MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60

Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
           +GCGSAIASSSL TEWVKGK++DEA  +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120

Query: 168 YRIKQNS 174
           Y+ K+ +
Sbjct: 121 YKSKREA 127

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0ACD5|NIFU_ECOL6 NifU-like protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nifU PE=3 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 112/127 (88%)

Query: 48  LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
           + Y E VIDHYENPRNVGS D  D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT
Sbjct: 1   MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60

Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
           +GCGSAIASSSL TEWVKGK++DEA  +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120

Query: 168 YRIKQNS 174
           Y+ K+ +
Sbjct: 121 YKSKREA 127

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
156536959	162	PREDICTED: iron-sulfur cluster assembly	0.743	0.820	0.894	1e-64
307205390	162	Iron-sulfur cluster assembly enzyme ISCU	0.743	0.820	0.894	1e-64
242009588	167	nitrogen fixation protein nifu, putative	0.782	0.838	0.872	1e-64
307183026	160	Iron-sulfur cluster assembly enzyme ISCU	0.731	0.818	0.908	3e-64
332020272	157	Iron-sulfur cluster assembly enzyme ISCU	0.731	0.834	0.908	5e-64
389611387	156	nitrogen fixation protein nifu [Papilio	0.709	0.814	0.944	7e-64
355786498	167	hypothetical protein EGM_03722 [Macaca f	0.860	0.922	0.743	8e-64
387016540	164	putative IscU iron-sulfur cluster scaffo	0.793	0.865	0.816	2e-63
357623381	154	hypothetical protein KGM_22314 [Danaus p	0.709	0.824	0.944	3e-63
21313484	168	iron-sulfur cluster assembly enzyme ISCU	0.860	0.916	0.740	3e-63

>gi|156536959|ref|XP_001608255.1| PREDICTED: iron-sulfur cluster assembly enzyme ISCU, mitochondrial-like [Nasonia vitripennis]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/133 (89%), Positives = 127/133 (95%)

Query: 42  WASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKII 101
           +++TP L+YH  V+DHY+NPRNVGSLDK DKNVGTGLVGAPACGDVMKLQIKVD+ GKII
Sbjct: 19  FSNTPTLYYHPKVLDHYDNPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDEGGKII 78

Query: 102 DAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAI 161
           DAKFKTFGCGSAIASSSLATEWVKGKTVD+ALKLKNTDIAKELCLPPVKLHCSMLAEDAI
Sbjct: 79  DAKFKTFGCGSAIASSSLATEWVKGKTVDQALKLKNTDIAKELCLPPVKLHCSMLAEDAI 138

Query: 162 KAALSDYRIKQNS 174
           KAALSDYRIKQ S
Sbjct: 139 KAALSDYRIKQQS 151

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205390|gb|EFN83731.1| Iron-sulfur cluster assembly enzyme ISCU, mitochondrial [Harpegnathos saltator] gi|307205391|gb|EFN83732.1| Iron-sulfur cluster assembly enzyme ISCU, mitochondrial [Harpegnathos saltator]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/133 (89%), Positives = 123/133 (92%)

Query: 44  STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDA 103
           S PV+ YH  VIDHYENPRNVGSLDK D+ VGTGLVGAPACGDVMKLQIKVD+NGKIIDA
Sbjct: 21  SVPVVSYHAKVIDHYENPRNVGSLDKSDEQVGTGLVGAPACGDVMKLQIKVDENGKIIDA 80

Query: 104 KFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKA 163
           KFKTFGCGSAIASSSLATEWVKGKTVDEAL LKNTDIA ELCLPPVK+HCSMLAEDAIKA
Sbjct: 81  KFKTFGCGSAIASSSLATEWVKGKTVDEALALKNTDIANELCLPPVKMHCSMLAEDAIKA 140

Query: 164 ALSDYRIKQNSAK 176
           ALSDYRIKQ S K
Sbjct: 141 ALSDYRIKQQSKK 153

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009588|ref|XP_002425565.1| nitrogen fixation protein nifu, putative [Pediculus humanus corporis] gi|212509444|gb|EEB12827.1| nitrogen fixation protein nifu, putative [Pediculus humanus corporis]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/141 (87%), Positives = 131/141 (92%), Gaps = 1/141 (0%)

Query: 36  LLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD 95
           LL+S +  ++P L YH NVIDHYENPRNVGSLDK DK+VGTGLVGAPACGDVMKLQI+VD
Sbjct: 15  LLRS-RSLNSPFLFYHPNVIDHYENPRNVGSLDKNDKDVGTGLVGAPACGDVMKLQIRVD 73

Query: 96  DNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSM 155
            NGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL LPPVKLHCSM
Sbjct: 74  KNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSM 133

Query: 156 LAEDAIKAALSDYRIKQNSAK 176
           LAEDAIKAALSDY+IKQ+S K
Sbjct: 134 LAEDAIKAALSDYKIKQSSIK 154

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183026|gb|EFN69982.1| Iron-sulfur cluster assembly enzyme ISCU, mitochondrial [Camponotus floridanus]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/131 (90%), Positives = 122/131 (93%)

Query: 44  STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDA 103
           S P + YH NV+DHYENPRNVGSLDK D  VGTGLVGAPACGDVMKLQIKVD+NGKIIDA
Sbjct: 21  SVPAVFYHVNVLDHYENPRNVGSLDKNDTQVGTGLVGAPACGDVMKLQIKVDENGKIIDA 80

Query: 104 KFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKA 163
           KFKTFGCGSAIASSSLATEWVKGKTVDEAL LKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 81  KFKTFGCGSAIASSSLATEWVKGKTVDEALALKNTDIAKELCLPPVKLHCSMLAEDAIKA 140

Query: 164 ALSDYRIKQNS 174
           ALSDYRIKQ S
Sbjct: 141 ALSDYRIKQQS 151

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020272|gb|EGI60706.1| Iron-sulfur cluster assembly enzyme ISCU, mitochondrial [Acromyrmex echinatior]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/131 (90%), Positives = 123/131 (93%)

Query: 44  STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDA 103
           S P + YH NVIDHYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQIKVD++GKIIDA
Sbjct: 21  SVPAVFYHANVIDHYENPRNVGSLDKNDDHVGTGLVGAPACGDVMKLQIKVDEDGKIIDA 80

Query: 104 KFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKA 163
           KFKTFGCGSAIASSSLATEWVKGKTVDEAL LKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 81  KFKTFGCGSAIASSSLATEWVKGKTVDEALALKNTDIAKELCLPPVKLHCSMLAEDAIKA 140

Query: 164 ALSDYRIKQNS 174
           ALSDYRIKQ S
Sbjct: 141 ALSDYRIKQQS 151

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611387|dbj|BAM19305.1| nitrogen fixation protein nifu [Papilio polytes]

 Score =  248 bits (633), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 120/127 (94%), Positives = 123/127 (96%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           YH NVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD+NGKIIDAKFKTFG
Sbjct: 28  YHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 87

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
           CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL LPPVKLHCSMLAEDAIKAALSDYR
Sbjct: 88  CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYR 147

Query: 170 IKQNSAK 176
           IKQ + +
Sbjct: 148 IKQQNPQ 154

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|355786498|gb|EHH66681.1| hypothetical protein EGM_03722 [Macaca fascicularis]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 119/160 (74%), Positives = 134/160 (83%), Gaps = 6/160 (3%)

Query: 23  SSGGTCRTNNATT--LLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGT 76
           ++ G CR   A +  LL+SP+      S P   YH+ V+DHYENPRNVGSLDK  KNVGT
Sbjct: 2   AAAGACRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGT 61

Query: 77  GLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK 136
           GLVGAPACGDVMKLQI+VDD GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +K
Sbjct: 62  GLVGAPACGDVMKLQIQVDDKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIK 121

Query: 137 NTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
           NTDIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ   K
Sbjct: 122 NTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKK 161

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387016540|gb|AFJ50389.1| putative IscU iron-sulfur cluster scaffold variant [Crotalus adamanteus]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/142 (81%), Positives = 127/142 (89%)

Query: 33  ATTLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQI 92
           A  LL+       P   YHE V+DHYENPRNVGSLDKK KNVGTGLVGAPACGDVMKLQ+
Sbjct: 11  AAVLLRPGLARPPPAAAYHEKVVDHYENPRNVGSLDKKAKNVGTGLVGAPACGDVMKLQV 70

Query: 93  KVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLH 152
           +VD+NGKI+DA+FKTFGCGSAIASSSLATEWVKGKTVDEALK+KNTDIAKELCLPPVKLH
Sbjct: 71  EVDENGKIVDARFKTFGCGSAIASSSLATEWVKGKTVDEALKIKNTDIAKELCLPPVKLH 130

Query: 153 CSMLAEDAIKAALSDYRIKQNS 174
           CSMLAEDAIKAAL+DY++KQ S
Sbjct: 131 CSMLAEDAIKAALADYKLKQGS 152

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357623381|gb|EHJ74559.1| hypothetical protein KGM_22314 [Danaus plexippus]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/127 (94%), Positives = 121/127 (95%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           YH NVIDHYENPRNVGSLDKKD NVGTGLVGAPACGDVMKLQIKVD+NGKIIDAKFKTFG
Sbjct: 28  YHANVIDHYENPRNVGSLDKKDANVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 87

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
           CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL LPPVKLHCSMLAEDAIKAALSDYR
Sbjct: 88  CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYR 147

Query: 170 IKQNSAK 176
           IKQ   K
Sbjct: 148 IKQQGKK 154

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21313484|ref|NP_079802.1| iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor [Mus musculus] gi|62900734|sp|Q9D7P6.1|ISCU_MOUSE RecName: Full=Iron-sulfur cluster assembly enzyme ISCU, mitochondrial; AltName: Full=NifU-like N-terminal domain-containing protein; AltName: Full=NifU-like protein; Flags: Precursor gi|12843563|dbj|BAB26031.1| unnamed protein product [Mus musculus] gi|26333493|dbj|BAC30464.1| unnamed protein product [Mus musculus] gi|26350381|dbj|BAC38830.1| unnamed protein product [Mus musculus] gi|29476869|gb|AAH48409.1| IscU iron-sulfur cluster scaffold homolog (E. coli) [Mus musculus] gi|66364557|gb|AAH96049.1| IscU iron-sulfur cluster scaffold homolog (E. coli) [Mus musculus] gi|148687990|gb|EDL19937.1| mCG3543, isoform CRA_b [Mus musculus]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/158 (74%), Positives = 132/158 (83%), Gaps = 4/158 (2%)

Query: 23  SSGGTCRTNNATTLLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGL 78
           +  G  R   +  LL+SP+      S P   YH+ V+DHYENPRNVGSLDK  KNVGTGL
Sbjct: 5   TGAGRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGL 64

Query: 79  VGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 138
           VGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +KNT
Sbjct: 65  VGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 124

Query: 139 DIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
           DIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ S K
Sbjct: 125 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKK 162

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
FB|FBgn0037637	154	CG9836 [Drosophila melanogaste	0.815	0.948	0.797	5.7e-59
MGI|MGI:1913633	168	Iscu "IscU iron-sulfur cluster	0.860	0.916	0.740	7.3e-59
RGD|1309562	167	Iscu "iron-sulfur cluster scaf	0.860	0.922	0.734	1.5e-58
UNIPROTKB|E2R2U4	167	ISCU "Uncharacterized protein"	0.860	0.922	0.734	2.5e-58
UNIPROTKB|Q9H1K1	167	ISCU "Iron-sulfur cluster asse	0.860	0.922	0.731	3.2e-58
UNIPROTKB|I3LA87	171	LOC100627183 "Uncharacterized	0.743	0.777	0.842	4e-58
UNIPROTKB|Q17QE6	167	ISCU "Uncharacterized protein"	0.837	0.898	0.740	8.4e-58
UNIPROTKB|I3LR64	168	LOC100621691 "Uncharacterized	0.860	0.916	0.734	1.4e-57
UNIPROTKB|F1NF91	161	ISCU "Uncharacterized protein"	0.776	0.863	0.787	5.3e-56
WB|WBGene00012885	153	Y45F10D.4 [Caenorhabditis eleg	0.782	0.915	0.787	2.3e-55

FB|FBgn0037637 CG9836 [Drosophila melanogaster (taxid:7227)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 118/148 (79%), Positives = 131/148 (88%)

Query:    32 NATTLLKSP--KWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMK 89
             N++ LL+S   +  S PV  YHENV++HYENPRNVGSLDKKD  VGTGLVGAPACGDVMK
Sbjct:     6 NSSRLLRSQLKRVQSVPVALYHENVVEHYENPRNVGSLDKKDVTVGTGLVGAPACGDVMK 65

Query:    90 LQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPV 149
             LQIKVD+NGKI+DAKFKTFGCGSAIASSSLATEWVKGK++DEA KLKNTDIAKEL LPPV
Sbjct:    66 LQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKSIDEAGKLKNTDIAKELRLPPV 125

Query:   150 KLHCSMLAEDAIKAALSDYRIKQNSAKA 177
             KLHCSMLAEDAIKAAL+DY++KQ    A
Sbjct:   126 KLHCSMLAEDAIKAALADYKVKQQKKVA 153

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

MGI|MGI:1913633 Iscu "IscU iron-sulfur cluster scaffold homolog (E. coli)" [Mus musculus (taxid:10090)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 117/158 (74%), Positives = 132/158 (83%)

Query:    23 SSGGTCRTNNATTLLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGL 78
             +  G  R   +  LL+SP+      S P   YH+ V+DHYENPRNVGSLDK  KNVGTGL
Sbjct:     5 TGAGRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGL 64

Query:    79 VGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 138
             VGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +KNT
Sbjct:    65 VGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 124

Query:   139 DIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
             DIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ S K
Sbjct:   125 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKK 162

GO:0005506 "iron ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

RGD|1309562 Iscu "iron-sulfur cluster scaffold homolog (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 116/158 (73%), Positives = 132/158 (83%)

Query:    23 SSGGTCRTNNATTLLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGL 78
             +  G  R   +  LL+SP+      S P   YH+ V+DHYENPRNVGSLDK  KNVGTGL
Sbjct:     4 AGAGRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGL 63

Query:    79 VGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 138
             VGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +KNT
Sbjct:    64 VGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 123

Query:   139 DIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
             DIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ + K
Sbjct:   124 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEAKK 161

GO:0005506 "iron ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA;ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|E2R2U4 ISCU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/158 (73%), Positives = 131/158 (82%)

Query:    23 SSGGTCRTNNATTLLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGL 78
             +  G  R   +  LL+SP+      S P   YH+ V+DHYENPRNVGSLDK  KNVGTGL
Sbjct:     4 AGAGRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGL 63

Query:    79 VGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 138
             VGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +KNT
Sbjct:    64 VGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 123

Query:   139 DIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
             DIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ   K
Sbjct:   124 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKK 161

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|Q9H1K1 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 117/160 (73%), Positives = 133/160 (83%)

Query:    23 SSGGTCRTNNATT--LLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGT 76
             ++ G  R   A +  LL+SP+      S P   YH+ V+DHYENPRNVGSLDK  KNVGT
Sbjct:     2 AAAGAFRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGT 61

Query:    77 GLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK 136
             GLVGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +K
Sbjct:    62 GLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIK 121

Query:   137 NTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
             NTDIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ   K
Sbjct:   122 NTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKK 161

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0009399 "nitrogen fixation" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005506 "iron ion binding" evidence=TAS

GO:0016226 "iron-sulfur cluster assembly" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=TAS

GO:0032947 "protein complex scaffold" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|I3LA87 LOC100627183 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 112/133 (84%), Positives = 122/133 (91%)

Query:    44 STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDA 103
             S P L YH+ V+DHYENPRNVGSLDK  KNVGTGLVGAPACGDVMKLQI+VDD GKI+DA
Sbjct:    33 SAPALLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 92

Query:   104 KFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKA 163
             +FKTFGCGSAIASSSLATEWVKGKTV+EAL +KNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct:    93 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 152

Query:   164 ALSDYRIKQNSAK 176
             AL+DY++KQ   K
Sbjct:   153 ALADYKLKQEPKK 165

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|Q17QE6 ISCU "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 114/154 (74%), Positives = 130/154 (84%)

Query:    23 SSGGTCRTNNATTLLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGL 78
             +  G  R   +  LL++P+      S P   YH+ V+DHYENPRNVGSLDK  KNVGTGL
Sbjct:     4 AGAGRLRRAASAVLLRAPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGL 63

Query:    79 VGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 138
             VGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +KNT
Sbjct:    64 VGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 123

Query:   139 DIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQ 172
             DIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ
Sbjct:   124 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 157

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|I3LR64 LOC100621691 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 116/158 (73%), Positives = 129/158 (81%)

Query:    23 SSGGTCRTNNATTLLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGL 78
             +  G  R   +  LL  P+      S P   YH+ V+DHYENPRNVGSLDK  KNVGTGL
Sbjct:     5 AGAGRLRRAASVLLLPVPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGL 64

Query:    79 VGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 138
             VGAPACGDVMKLQI+VDD GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +KNT
Sbjct:    65 VGAPACGDVMKLQIQVDDKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 124

Query:   139 DIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
             DIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ   K
Sbjct:   125 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKK 162

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|F1NF91 ISCU "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 111/141 (78%), Positives = 128/141 (90%)

Query:    36 LLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD 95
             LL+  + A+  V  YH+ V+DHYENPRNVGSLD+  KNVGTGLVGAPA GDVMKLQ++VD
Sbjct:    17 LLRPGRGAAAGV-GYHKKVVDHYENPRNVGSLDRNAKNVGTGLVGAPA-GDVMKLQVEVD 74

Query:    96 DNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSM 155
             +NG+I+DA+FKTFGCGSAIASSSLATEWVKGKTVDEALK+KNTDIAKELCLPPVKLHCSM
Sbjct:    75 ENGRIVDARFKTFGCGSAIASSSLATEWVKGKTVDEALKIKNTDIAKELCLPPVKLHCSM 134

Query:   156 LAEDAIKAALSDYRIKQNSAK 176
             LAEDAIKAAL+DY++KQ+  K
Sbjct:   135 LAEDAIKAALADYKLKQDPKK 155

GO:0005506 "iron ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

WB|WBGene00012885 Y45F10D.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 111/141 (78%), Positives = 123/141 (87%)

Query:    33 ATTLL-KSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQ 91
             A TLL K    A+T V  YHE VIDHYENPRNVGSLDK D +VGTG+VGAPACGDVMKLQ
Sbjct:     9 AKTLLHKFALPAATSVAQYHEKVIDHYENPRNVGSLDKNDPSVGTGIVGAPACGDVMKLQ 68

Query:    92 IKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKL 151
             I+VDDNGKII+AKFKTFGCGSAIASSSLATEW+ GKT+D A K+KN +IAKELCLPPVKL
Sbjct:    69 IRVDDNGKIIEAKFKTFGCGSAIASSSLATEWINGKTIDYASKIKNDEIAKELCLPPVKL 128

Query:   152 HCSMLAEDAIKAALSDYRIKQ 172
             HCSMLA+DAI+AAL DY+ KQ
Sbjct:   129 HCSMLAQDAIQAALKDYQKKQ 149

GO:0005506 "iron ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9H1K1	ISCU_HUMAN	No assigned EC number	0.7312	0.8603	0.9221	yes	N/A
O81433	ISU3_ARATH	No assigned EC number	0.7698	0.7039	0.7368	no	N/A
Q6CFQ0	ISU1_YARLI	No assigned EC number	0.6481	0.8659	0.8563	yes	N/A
Q9UTC6	ISU1_SCHPO	No assigned EC number	0.7317	0.6871	0.6406	yes	N/A
O51885	NIFU_BUCAP	No assigned EC number	0.7063	0.7039	0.9843	yes	N/A
P57658	NIFU_BUCAI	No assigned EC number	0.712	0.6983	0.9842	yes	N/A
Q9ZD61	NIFU_RICPR	No assigned EC number	0.7596	0.7206	0.9847	yes	N/A
Q89A18	NIFU_BUCBP	No assigned EC number	0.72	0.6983	0.9920	yes	N/A
Q9D7P6	ISCU_MOUSE	No assigned EC number	0.7405	0.8603	0.9166	yes	N/A
O49627	ISU1_ARATH	No assigned EC number	0.7162	0.8044	0.8622	yes	N/A
Q57074	NIFU_HAEIN	No assigned EC number	0.784	0.6983	0.9920	yes	N/A
Q9MAB6	ISU2_ARATH	No assigned EC number	0.7441	0.7206	0.7914	no	N/A
B0YLW7	ISU1_TRAHO	No assigned EC number	0.7642	0.6815	0.8840	N/A	N/A
Q03020	ISU1_YEAST	No assigned EC number	0.7539	0.6983	0.7575	yes	N/A
Q12056	ISU2_YEAST	No assigned EC number	0.7244	0.7039	0.8076	no	N/A
O67045	NIFU_AQUAE	No assigned EC number	0.5112	0.7150	0.8152	yes	N/A
Q6CRQ9	ISU1_KLULA	No assigned EC number	0.6827	0.7932	0.7888	yes	N/A
Q75C07	ISU1_ASHGO	No assigned EC number	0.7343	0.7094	0.8246	yes	N/A
Q8SSM2	ISU1_ENCCU	No assigned EC number	0.7563	0.6648	0.85	yes	N/A
Q6BGU0	ISU1_DEBHA	No assigned EC number	0.76	0.6927	0.6927	yes	N/A
P0ACD6	NIFU_ECO57	No assigned EC number	0.7401	0.7094	0.9921	N/A	N/A
P0ACD7	NIFU_SHIFL	No assigned EC number	0.7401	0.7094	0.9921	yes	N/A
P0ACD4	NIFU_ECOLI	No assigned EC number	0.7401	0.7094	0.9921	N/A	N/A
P0ACD5	NIFU_ECOL6	No assigned EC number	0.7401	0.7094	0.9921	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	179
PRK11325	127	PRK11325, PRK11325, scaffold protein; Provisional	5e-91
TIGR01999	124	TIGR01999, iscU, FeS cluster assembly scaffold Isc	2e-85
pfam01592	126	pfam01592, NifU_N, NifU-like N terminal domain	1e-68
TIGR03419	121	TIGR03419, NifU_clost, FeS cluster assembly scaffo	1e-55
COG0822	150	COG0822, IscU, NifU homolog involved in Fe-S clust	1e-52
cd06664	123	cd06664, IscU_like, Iron-sulfur cluster scaffold-l	9e-52
TIGR02000	290	TIGR02000, NifU_proper, Fe-S cluster assembly prot	8e-40
TIGR01994	137	TIGR01994, SUF_scaf_2, SUF system FeS assembly pro	1e-17

>gnl|CDD|183087 PRK11325, PRK11325, scaffold protein; Provisional

 Score =  260 bits (667), Expect = 5e-91
 Identities = 100/124 (80%), Positives = 111/124 (89%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E VIDHYENPRNVGS DK D NVGTG+VGAPACGDVMKLQIKV+D G I DAKFKT+G
Sbjct: 3   YSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDEGIIEDAKFKTYG 62

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
           CGSAIASSSL TEWVKGKT+DEAL +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++DY+
Sbjct: 63  CGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEELALPPVKIHCSILAEDAIKAAIADYK 122

Query: 170 IKQN 173
            KQ 
Sbjct: 123 SKQA 126

Length = 127

>gnl|CDD|188192 TIGR01999, iscU, FeS cluster assembly scaffold IscU

 Score =  246 bits (631), Expect = 2e-85
 Identities = 103/124 (83%), Positives = 114/124 (91%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E VIDHYENPRNVGSLDK DKNVGTGLVGAPACGDVMKLQIKV+D+G I DAKFKTFG
Sbjct: 1   YSEKVIDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDDGIIEDAKFKTFG 60

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
           CGSAIASSSLATE +KGK+++EALK+KNT+IAKEL LPPVKLHCS+LAEDAIKAA+ DY+
Sbjct: 61  CGSAIASSSLATELIKGKSLEEALKIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIKDYK 120

Query: 170 IKQN 173
            KQ 
Sbjct: 121 SKQE 124

This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 124

>gnl|CDD|216592 pfam01592, NifU_N, NifU-like N terminal domain

 Score =  204 bits (521), Expect = 1e-68
 Identities = 83/128 (64%), Positives = 102/128 (79%), Gaps = 5/128 (3%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFKTF 108
           Y + V+DH++NPRNVG L++ D     G VG+PACGD M+LQIKVD D  +I DAKFKTF
Sbjct: 2   YSDKVLDHFKNPRNVGVLEEAD---AVGDVGSPACGDAMRLQIKVDEDTDRIEDAKFKTF 58

Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELC-LPPVKLHCSMLAEDAIKAALSD 167
           GCGSAIASSS  TE VKGKT+DEALK+ NTDIA+EL  LPPVK+HCS+L +DA+KAA++D
Sbjct: 59  GCGSAIASSSALTELVKGKTLDEALKITNTDIAEELGGLPPVKMHCSVLGDDALKAAIAD 118

Query: 168 YRIKQNSA 175
           Y+ K   A
Sbjct: 119 YKGKNLCA 126

This domain is found in NifU in combination with pfam01106. This domain is found on isolated in several bacterial species. The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. These proteins appear to be scaffold proteins for iron-sulfur clusters. Length = 126

>gnl|CDD|132460 TIGR03419, NifU_clost, FeS cluster assembly scaffold protein NifU, Clostridium type

 Score =  171 bits (435), Expect = 1e-55
 Identities = 72/125 (57%), Positives = 94/125 (75%), Gaps = 5/125 (4%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E V+DH+ NPRNVG ++  D   G G VG P CGD+MK+ +KV+D+  I D KFKTFG
Sbjct: 1   YSEKVMDHFMNPRNVGEIENAD---GVGEVGNPKCGDIMKIFLKVEDD-IIKDVKFKTFG 56

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSDY 168
           CG+AIASSS+ATE +KGKT++EA +L N  +A+ L  LPPVK+HCS+LAE+AI  A++DY
Sbjct: 57  CGAAIASSSMATEMIKGKTLEEAWELTNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDY 116

Query: 169 RIKQN 173
           R K  
Sbjct: 117 REKNG 121

NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 121

>gnl|CDD|223892 COG0822, IscU, NifU homolog involved in Fe-S cluster formation [Energy production and conversion]

 Score =  164 bits (417), Expect = 1e-52
 Identities = 80/147 (54%), Positives = 96/147 (65%), Gaps = 22/147 (14%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E ++DHY+NPRNVG LD  D  VG G VGAPACGDV+ L +KVD NG I DAKFK FG
Sbjct: 7   YSEKILDHYKNPRNVGVLDDAD--VGVGHVGAPACGDVITLYLKVD-NGVIEDAKFKGFG 63

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLK--NTDIAKELC-----------------LPPVK 150
           C  +IASSS+ TE VKGKT+DEALK+    TD+AKEL                  LPP +
Sbjct: 64  CAISIASSSMMTELVKGKTLDEALKITEAFTDMAKELGGDPDDRLGDLVALAGVALPPAR 123

Query: 151 LHCSMLAEDAIKAALSDYRIKQNSAKA 177
           + CS+LA DA+KAA+ DY+ K   A  
Sbjct: 124 IKCSLLAWDALKAAIKDYKGKAEEAVE 150

Length = 150

>gnl|CDD|143480 cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins

 Score =  161 bits (409), Expect = 9e-52
 Identities = 66/126 (52%), Positives = 84/126 (66%), Gaps = 15/126 (11%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E ++DHY NPRNVG L+      GTG VG P CGD + L +KV+D G+I DAKF+ FG
Sbjct: 2   YSEIILDHYRNPRNVGRLED---ADGTGEVGNPLCGDEITLYLKVED-GRITDAKFQGFG 57

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKE-----------LCLPPVKLHCSMLAE 158
           C  +IAS+SL TE +KGKT+DEALKL N DIA             + LPP ++HC++LA 
Sbjct: 58  CAISIASASLLTELIKGKTLDEALKLLNKDIAMLDGKEELAALAGVGLPPARIHCALLAW 117

Query: 159 DAIKAA 164
            A+KAA
Sbjct: 118 KALKAA 123

IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy. Length = 123

>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU

 Score =  136 bits (343), Expect = 8e-40
 Identities = 61/122 (50%), Positives = 90/122 (73%), Gaps = 5/122 (4%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFKTF 108
           Y + V +H+ NP+N G ++  +     G VG+ +CGD ++L +KVD ++ KI+DA F+TF
Sbjct: 4   YTDKVKEHFYNPKNAGVVEDANA---VGEVGSISCGDALRLMLKVDPESDKIVDAGFQTF 60

Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSD 167
           GCGSAIASSS  TE +KG T+DEALK+ N DIA  L  LPP K+HCS++ ++A++AA+++
Sbjct: 61  GCGSAIASSSALTEMIKGLTLDEALKVSNQDIADYLGGLPPEKMHCSVMGQEALEAAIAN 120

Query: 168 YR 169
           YR
Sbjct: 121 YR 122

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290

>gnl|CDD|233676 TIGR01994, SUF_scaf_2, SUF system FeS assembly protein, NifU family

 Score = 74.7 bits (184), Expect = 1e-17
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 14/91 (15%)

Query: 50  YHENVIDHYENPRNVGSLDKKD-----KNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAK 104
           Y + ++DHY+NPR+ G L+         N        P CGD + L +K++ + +I D  
Sbjct: 5   YRQVILDHYKNPRHRGKLEDATVQERGHN--------PTCGDEITLTVKLEGD-RIEDIA 55

Query: 105 FKTFGCGSAIASSSLATEWVKGKTVDEALKL 135
           F+  GC  + AS+S+ TE +KGKTV+EAL L
Sbjct: 56  FEGEGCSISQASASMMTELIKGKTVEEALSL 86

Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PRK11325	127	scaffold protein; Provisional	100.0
TIGR01999	124	iscU FeS cluster assembly scaffold IscU. This mode	100.0
TIGR03419	121	NifU_clost FeS cluster assembly scaffold protein N	100.0
COG0822	150	IscU NifU homolog involved in Fe-S cluster formati	100.0
PF01592	126	NifU_N: NifU-like N terminal domain; InterPro: IPR	100.0
TIGR01994	137	SUF_scaf_2 SUF system FeS assembly protein, NifU f	100.0
KOG3361|consensus	157		100.0
cd06664	123	IscU_like Iron-sulfur cluster scaffold-like protei	100.0
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	100.0
PF02657	125	SufE: Fe-S metabolism associated domain; InterPro:	93.58
TIGR03391	138	FeS_syn_CsdE cysteine desulfurase, sulfur acceptor	91.79
PRK15019	147	CsdA-binding activator; Provisional	91.24
PRK09296	138	cysteine desufuration protein SufE; Provisional	90.58
PLN02673	724	quinolinate synthetase A	88.57
COG2166	144	sufE Cysteine desulfurase SufE subunit [Posttransl	87.66

>PRK11325 scaffold protein; Provisional

Probab=100.00  E-value=1.6e-40  Score=255.57  Aligned_cols=124  Identities=81%  Similarity=1.251  Sum_probs=116.8

Q ss_pred             hhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCC
Q psy10992         49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKT  128 (179)
Q Consensus        49 lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKt  128 (179)
                      .|+++|++||+||+|+|.+++|+..++.++.+||.|||+|+|||+|+++|+|+|++|+++||++++||||+|+++++|||
T Consensus         2 ~Y~~~il~h~~~P~n~G~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gkt   81 (127)
T PRK11325          2 AYSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKT   81 (127)
T ss_pred             ccHHHHHHHHhCcCCCCCCCCCccccceEEecCCCCccEEEEEEEECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCC
Confidence            69999999999999999999998544566789999999999999997568999999999999999999999999999999


Q ss_pred             HHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHhc
Q psy10992        129 VDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQ  172 (179)
Q Consensus       129 l~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k~  172 (179)
                      ++||..|+.+++.+.||+||+|+|||.|+|+||++|+++|+.++
T Consensus        82 l~ea~~i~~~~i~~~lg~p~~r~~CA~la~~al~~a~~~y~~~~  125 (127)
T PRK11325         82 LDEALAIKNTDIAEELALPPVKIHCSILAEDAIKAAIADYKSKQ  125 (127)
T ss_pred             HHHHHhcCHHHHHHHcCCCcccchHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999998764

>TIGR01999 iscU FeS cluster assembly scaffold IscU

Probab=100.00  E-value=7e-40  Score=250.89  Aligned_cols=123  Identities=83%  Similarity=1.254  Sum_probs=115.9

Q ss_pred             hHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCCH
Q psy10992         50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTV  129 (179)
Q Consensus        50 Y~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKtl  129 (179)
                      |+++|++||.||+|+|.+++|+..+++++.+||.|||.|+|||+|+++++|++++|+++||++++||+|+|+++++|||+
T Consensus         1 Y~~~il~~~~~p~n~G~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl   80 (124)
T TIGR01999         1 YSEKVLDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDDGIIEDAKFKTFGCGSAIASSSLATELIKGKSL   80 (124)
T ss_pred             CcHHHHHHHhCCCCCCCCCCCccccceEEeCCCCCccEEEEEEEECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCH
Confidence            89999999999999999999985445678899999999999999975589999999999999999999999999999999


Q ss_pred             HHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHhc
Q psy10992        130 DEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQ  172 (179)
Q Consensus       130 ~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k~  172 (179)
                      +|+..|+++++.+.||+||+|+|||.|+|+||++|+.+|+.++
T Consensus        81 ~ea~~i~~~~i~~~lg~p~~r~~CA~l~~~al~~a~~~y~~~~  123 (124)
T TIGR01999        81 EEALKIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIKDYKSKQ  123 (124)
T ss_pred             HHHHhccHHHHHHHcCCCcccchHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998764

This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.

>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type

Probab=100.00  E-value=1.7e-38  Score=242.45  Aligned_cols=120  Identities=58%  Similarity=0.993  Sum_probs=113.3

Q ss_pred             hHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCCH
Q psy10992         50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTV  129 (179)
Q Consensus        50 Y~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKtl  129 (179)
                      |+++|+|||+||+|+|++++|+.   +++.+||.|||.|+|||+|+ +++|+|++|+++||++++||||+|+++++|||+
T Consensus         1 Y~~~il~~~~np~~~g~l~~~~~---~~~~~np~CGD~i~l~l~i~-~~~I~d~~f~~~GC~is~Asas~~~e~i~Gk~l   76 (121)
T TIGR03419         1 YSEKVMDHFMNPRNVGEIENADG---VGEVGNPKCGDIMKIFLKVE-DDIIKDVKFKTFGCGAAIASSSMATEMIKGKTL   76 (121)
T ss_pred             ChHHHHHHHhCCCCCCCCCCCCe---EEEeCCCCCccEEEEEEEEc-CCEEEEEEEEEeccHHHHHHHHHHHHHHcCCCH
Confidence            89999999999999999999984   46889999999999999997 689999999999999999999999999999999


Q ss_pred             HHHHHhhhHhHHhhcC-CCCCcchhhHHHHHHHHHHHHHHHHhch
Q psy10992        130 DEALKLKNTDIAKELC-LPPVKLHCSMLAEDAIKAALSDYRIKQN  173 (179)
Q Consensus       130 ~Ea~~i~~~~i~~~L~-~~~~R~~CA~La~~AL~~Al~~y~~k~~  173 (179)
                      +||..|..+++.+.|+ +||+|+|||+|+|+||++|+++|+.+.+
T Consensus        77 ~ea~~i~~~~i~~~l~~l~~~r~~CA~la~~al~~a~~~y~~~~~  121 (121)
T TIGR03419        77 EEAWELTNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDYREKNG  121 (121)
T ss_pred             HHHHHhhhHHHHHHHcCCCcccCHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999988888885 8999999999999999999999998753

NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.

>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]

Probab=100.00  E-value=1.2e-36  Score=240.39  Aligned_cols=128  Identities=61%  Similarity=0.949  Sum_probs=114.8

Q ss_pred             cchHhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHH
Q psy10992         44 STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEW  123 (179)
Q Consensus        44 ~~~~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~  123 (179)
                      ++.+.+|+++|++||.||+|.|.+++++.  +.+..++|.|||.|+|||+++ +|+|+|++|+++||++++||+|+|+++
T Consensus         1 ~~~~~~y~~~Ildh~~np~~~g~l~~~~~--~~~~~~~~~CGD~i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~   77 (150)
T COG0822           1 SNLDDLYSEKILDHYKNPRNVGVLDDADV--GVGHVGAPACGDVITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTEL   77 (150)
T ss_pred             CcHHHHHHHHHHHHhcCCCcCCccCccch--hccccCCCCccceEEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHH
Confidence            35799999999999999999999999984  345667799999999999998 799999999999999999999999999


Q ss_pred             hcCCCHHHHHHhhhH--hHHhhcC-----------------CCCCcchhhHHHHHHHHHHHHHHHHhchh
Q psy10992        124 VKGKTVDEALKLKNT--DIAKELC-----------------LPPVKLHCSMLAEDAIKAALSDYRIKQNS  174 (179)
Q Consensus       124 ~~GKtl~Ea~~i~~~--~i~~~L~-----------------~~~~R~~CA~La~~AL~~Al~~y~~k~~~  174 (179)
                      ++|||++||+.|++.  ++.+.++                 +||.|++|++|+|+||++++.+|+.++..
T Consensus        78 v~Gkti~EAl~i~~~~~~m~~~~~~~~~~~l~d~~~l~~v~~~p~r~~C~~L~~~al~~ai~~~~~~~~~  147 (150)
T COG0822          78 VKGKTLDEALKITEAFTDMAKELGGDPDDRLGDLVALAGVALPPARIKCSLLAWDALKAAIKDYKGKAEE  147 (150)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhHhhhhhccccccccchhccHHHHHHHHHHhhccccc
Confidence            999999999999954  4445443                 79999999999999999999999887643

>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=100.00  E-value=5.1e-36  Score=229.74  Aligned_cols=123  Identities=50%  Similarity=0.944  Sum_probs=114.8

Q ss_pred             hhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCC-CcEEEeEEeeccchHHHHHHHHHHHHhcCC
Q psy10992         49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDN-GKIIDAKFKTFGCGSAIASSSLATEWVKGK  127 (179)
Q Consensus        49 lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~-g~I~di~F~~~GCais~ASASil~e~~~GK  127 (179)
                      +|+++|++||.||+|+|.+++++.  +++..+||+|||.|+|||+|+++ |+|+|++|+++||++++||+|+|+++++||
T Consensus         1 ~Y~~~i~~~~~nP~~~g~l~~~~~--~~~~~~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk   78 (126)
T PF01592_consen    1 MYSDKILDHYRNPRNYGKLEDADA--GTGEAGNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGK   78 (126)
T ss_dssp             HHHHHHHHHHHSTSSBSSSTTTSS--EEEEEEETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTS
T ss_pred             CchHHHHHHHhCCCCCCCCCCCCc--ceeeecCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCC
Confidence            599999999999999999999984  25678999999999999999865 799999999999999999999999999999


Q ss_pred             CHHHHHHhhhHhHHhhcC-CCCCcchhhHHHHHHHHHHHHHHHHhch
Q psy10992        128 TVDEALKLKNTDIAKELC-LPPVKLHCSMLAEDAIKAALSDYRIKQN  173 (179)
Q Consensus       128 tl~Ea~~i~~~~i~~~L~-~~~~R~~CA~La~~AL~~Al~~y~~k~~  173 (179)
                      |++||..|+.+++.+.|+ +|+.|.+|+.|++.||++++.+|..|+.
T Consensus        79 ~l~ea~~i~~~~i~~~l~~~~~~~~~~~~l~~~al~~av~~y~~r~~  125 (126)
T PF01592_consen   79 TLEEALKITAEDIEEALGGLPPERQHCAELADDALKAAVADYPARHK  125 (126)
T ss_dssp             BHHHHHCHHHHHHHHHHTC-CGTCGHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999996 8999999999999999999999998863

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....

>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family

Probab=100.00  E-value=1e-35  Score=231.54  Aligned_cols=116  Identities=37%  Similarity=0.616  Sum_probs=103.4

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcC
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKG  126 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~G  126 (179)
                      .++|+++|+|||+||+|+|.+++|+.   +++.+||+|||+|+||++|+ +++|++++|+++||++++||||+|+++++|
T Consensus         2 ~~lY~~~Ileh~~~p~n~g~l~~~~~---~~~~~np~CGD~i~l~l~v~-~~~I~d~~f~~~GCais~Asas~~~e~i~G   77 (137)
T TIGR01994         2 DSLYRQVILDHYKNPRHRGKLEDATV---QERGHNPTCGDEITLTVKLE-GDRIEDIAFEGEGCSISQASASMMTELIKG   77 (137)
T ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCe---eEEeCCCCCCcEEEEEEEEc-CCeEEEEEEEecccHHHHHHHHHHHHHHcC
Confidence            57999999999999999999999984   45789999999999999996 689999999999999999999999999999


Q ss_pred             CCHHHHHHhhhHh---HH--------------hhc---CCCCCcchhhHHHHHHHHHHHH
Q psy10992        127 KTVDEALKLKNTD---IA--------------KEL---CLPPVKLHCSMLAEDAIKAALS  166 (179)
Q Consensus       127 Ktl~Ea~~i~~~~---i~--------------~~L---~~~~~R~~CA~La~~AL~~Al~  166 (179)
                      ||++|+..+.+.+   +.              ..|   ..+|+|++||+|||+||++||.
T Consensus        78 k~~~ea~~l~~~~~~ml~~~~~~~~~~~l~dl~~l~~v~~~p~R~~Ca~L~~~al~~al~  137 (137)
T TIGR01994        78 KTVEEALSLVEAFSEMIQGQETDEDEEKLGDAEALAGVAKFPARIKCATLAWKALERALA  137 (137)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCccccccchHHHhhccccCcchHHHHHHHHHHHHHHhC
Confidence            9999999999752   11              011   3489999999999999999873

Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.

>KOG3361|consensus

Probab=100.00  E-value=2e-35  Score=227.22  Aligned_cols=128  Identities=87%  Similarity=1.273  Sum_probs=124.1

Q ss_pred             hHhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhc
Q psy10992         46 PVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVK  125 (179)
Q Consensus        46 ~~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~  125 (179)
                      ..-+|.+.++|||.||||.|.++..|..||+|.++-|.|||.++++++|+++|+|+|++|.++||+.++||+|+++||++
T Consensus        25 ~~rlYh~~VidHy~nPRNVGSldK~dpnVGtGlVGAPACGDVMkLqIkvd~~g~I~dakFKTFGCGSAIASSS~aTewvk  104 (157)
T KOG3361|consen   25 ASRLYHENVIDHYENPRNVGSLDKNDPNVGTGLVGAPACGDVMKLQIKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVK  104 (157)
T ss_pred             hhhhcchhhhhcccCccccCccCCCCCCcccccccCccccceeeEEEEECCCCcEEEeeeeecccchHhhhhHHHHHHHc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHhch
Q psy10992        126 GKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQN  173 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k~~  173 (179)
                      |||++|+..|.+.+|..+|.+||.++||.+|+.+|++.|+.+|+.|+.
T Consensus       105 gkt~dea~kIkNteIAKeL~LPPVKLHCSMLAEDAIKaAikdyk~Kq~  152 (157)
T KOG3361|consen  105 GKTLDEALKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKEKQN  152 (157)
T ss_pred             cccHHHHHhcccHHHHHhccCCchhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999998865

>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins

Probab=100.00  E-value=2.8e-35  Score=223.65  Aligned_cols=112  Identities=58%  Similarity=0.958  Sum_probs=103.9

Q ss_pred             hhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCC
Q psy10992         49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKT  128 (179)
Q Consensus        49 lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKt  128 (179)
                      +|+++|++||.||+|.|.+++++.   .++.+||.|||+|+||++|+ +++|++++|+++||++++||||+|+++++|||
T Consensus         1 ~y~~~il~~~~~p~~~g~l~~~~~---~~~~~n~~CGD~v~l~l~i~-~~~I~d~~f~~~GC~i~~Asas~~~~~~~Gk~   76 (123)
T cd06664           1 LYSEIILDHYRNPRNVGRLEDADG---TGEVGNPLCGDEITLYLKVE-DGRITDAKFQGFGCAISIASASLLTELIKGKT   76 (123)
T ss_pred             CcHHHHHHHhhCCCCCCCCCCCCe---EEEcCCCCCCceEEEEEEEc-CCEEEEEEEEecCcHHHHHHHHHHHHHHcCCc
Confidence            599999999999999999999874   46789999999999999997 58999999999999999999999999999999


Q ss_pred             HHHHHHhhhHhHHhh-----------cCCCCCcchhhHHHHHHHHHH
Q psy10992        129 VDEALKLKNTDIAKE-----------LCLPPVKLHCSMLAEDAIKAA  164 (179)
Q Consensus       129 l~Ea~~i~~~~i~~~-----------L~~~~~R~~CA~La~~AL~~A  164 (179)
                      ++|+..|..+++...           .+.||+|++||+|||+||++|
T Consensus        77 ~~ea~~i~~~~~~~~~~~~~l~~~~~~~~~~~R~~Ca~L~~~Al~~a  123 (123)
T cd06664          77 LDEALKLLNKDIAMLDGKEELAALAGVGLPPARIHCALLAWKALKAA  123 (123)
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHhcccccCcccchHHHHHHHHHHhC
Confidence            999999999877653           368999999999999999874

IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=100.00  E-value=5.2e-34  Score=246.08  Aligned_cols=123  Identities=50%  Similarity=0.861  Sum_probs=115.2

Q ss_pred             hhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECC-CCcEEEeEEeeccchHHHHHHHHHHHHhcCC
Q psy10992         49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDD-NGKIIDAKFKTFGCGSAIASSSLATEWVKGK  127 (179)
Q Consensus        49 lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~-~g~I~di~F~~~GCais~ASASil~e~~~GK  127 (179)
                      .|+++|++||+||+|+|.+++|+.   +++.+||+|||.|+|||+|++ +++|+|++|+++||++++||||+|+++++||
T Consensus         3 ~Ys~~Ildh~~nP~n~G~L~~~~~---~g~~~np~CGD~i~l~l~vd~~~~~I~d~~F~~~GCais~ASAs~~~eli~Gk   79 (290)
T TIGR02000         3 DYTDKVKEHFYNPKNAGVVEDANA---VGEVGSISCGDALRLMLKVDPESDKIVDAGFQTFGCGSAIASSSALTEMIKGL   79 (290)
T ss_pred             chHHHHHHHHhCcCCCCCCCCCCc---EEEeCCCCCcceEEEEEEEcCCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCC
Confidence            499999999999999999999983   568899999999999999973 6899999999999999999999999999999


Q ss_pred             CHHHHHHhhhHhHHhhc-CCCCCcchhhHHHHHHHHHHHHHHHHhchh
Q psy10992        128 TVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSDYRIKQNS  174 (179)
Q Consensus       128 tl~Ea~~i~~~~i~~~L-~~~~~R~~CA~La~~AL~~Al~~y~~k~~~  174 (179)
                      |++||..++.+++.++| ++||+|+|||.|+|+||++|+.+|..+...
T Consensus        80 tv~ea~~i~~~di~~~L~~lpp~r~~CA~La~~Al~~Al~~y~~kp~~  127 (290)
T TIGR02000        80 TLDEALKVSNQDIADYLGGLPPEKMHCSVMGQEALEAAIANYRGEPLE  127 (290)
T ss_pred             CHHHHHHhhHHHHHHHHcCCChhhchHHHHHHHHHHHHHHHHhcCccc
Confidence            99999999999998888 599999999999999999999999887554

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins

Probab=93.58  E-value=1.9  Score=32.94  Aligned_cols=98  Identities=20%  Similarity=0.266  Sum_probs=63.0

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhc
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVK  125 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~  125 (179)
                      |+.--+.|+++.+..+....-...+..    .  -+.|-..|-|+...+++|++   .|.++. -.+...-.+++.+.+.
T Consensus        11 ~~~ry~~Li~lgk~lp~l~~~~~~~~~----~--V~GC~S~vWl~~~~~~~g~~---~f~adSda~ivkGl~all~~~~~   81 (125)
T PF02657_consen   11 WEERYRYLIDLGKKLPPLPEELRTDEN----L--VHGCQSQVWLHVEEDEDGKV---HFRADSDARIVKGLLALLLEVLN   81 (125)
T ss_dssp             HHHHHHHHHHHHHTS----CCCCSCCE----E--ETSSSS-EEEEEEEETTSEE---EEEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHhcccc----c--CCCCccceeEeeeeccCCEE---EEEecCccHHHHHHHHHHHHHHc
Confidence            555556778999887654432222211    2  25899998885544456766   566653 4578888999999999


Q ss_pred             CCCHHHHHHhhhHhHHhhcC----CCCCcchhh
Q psy10992        126 GKTVDEALKLKNTDIAKELC----LPPVKLHCS  154 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i~~~L~----~~~~R~~CA  154 (179)
                      |+|.+|+..++.. +.+.+|    +.|.|.+=.
T Consensus        82 g~t~~eI~~~~~~-fl~~lgl~~~Ls~sR~nGl  113 (125)
T PF02657_consen   82 GQTPEEILAFDPD-FLEQLGLSQHLSPSRSNGL  113 (125)
T ss_dssp             T-BHHHHHHS-TH-HHHHHTSCCCSTHHHHHHH
T ss_pred             CCCHHHHHhCCHH-HHHHcCcccccCchHHHHH
Confidence            9999999999999 555665    467777633

This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.

>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE

Probab=91.79  E-value=2.4  Score=33.11  Aligned_cols=96  Identities=18%  Similarity=0.130  Sum_probs=64.3

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhc
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVK  125 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~  125 (179)
                      ++.|+- |+++.+.-.   .+++....   ....-+.|-..|=|...+.+||+   +.|.++. =.+...-++++.+.+.
T Consensus        26 e~ry~~-lI~lgk~Lp---~lpe~~r~---~~~~V~GCqS~VWl~~~~~~dg~---~~f~~dSDa~IvkGl~alL~~~~~   95 (138)
T TIGR03391        26 EDRYRQ-LILLAKQLP---ALPEALKT---QATELTGCENRVWLGHQVLPDGT---LHFYGDSEGRIVRGLLAVLLTAVE   95 (138)
T ss_pred             HHHHHH-HHHHHhhCC---CCChHHcC---hhhccCCcccceeeeeeecCCCE---EEEEecCccHHHHHHHHHHHHHHc
Confidence            455644 567766533   23332210   11123589888887766544564   4566663 4577888999999999


Q ss_pred             CCCHHHHHHhhhHhHHhhcC----CCCCcch
Q psy10992        126 GKTVDEALKLKNTDIAKELC----LPPVKLH  152 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i~~~L~----~~~~R~~  152 (179)
                      |+|.+|+.+++..++...||    +.|.|.+
T Consensus        96 g~tp~eI~~~d~~~~~~~lGL~~~LSpsR~N  126 (138)
T TIGR03391        96 GKTPEQLLAQDPLALFDELGLRAQLSASRSN  126 (138)
T ss_pred             CCCHHHHHHCCHHHHHHHcCchhccCccHHH
Confidence            99999999999977777776    5788876

Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK15019 CsdA-binding activator; Provisional

Probab=91.24  E-value=6.3  Score=31.19  Aligned_cols=71  Identities=21%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             CCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhcCCCHHHHHHhhhHhHHhhcC----CCCCcchhhH
Q psy10992         82 PACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELC----LPPVKLHCSM  155 (179)
Q Consensus        82 p~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~GKtl~Ea~~i~~~~i~~~L~----~~~~R~~CA~  155 (179)
                      +.|-..|-|...++++|+   +.|.++. =.|...-++++.+.+.|+|++|+.+++..++...+|    +.|.|..=..
T Consensus        59 ~GCqS~VWL~~~~~~dg~---~~f~~dSDA~IvkGl~alL~~~~~g~tp~eIl~~d~~~~~~~lGL~~~LSpsR~NGl~  134 (147)
T PRK15019         59 AGCENRVWLGYTVAENGK---MHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLN  134 (147)
T ss_pred             CCcccceeeeeeecCCCE---EEEEeeCccHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHHHCCchhhcCccHHHHHH
Confidence            589888888777744563   4666653 357788899999999999999999999977777776    5788987433

>PRK09296 cysteine desufuration protein SufE; Provisional

Probab=90.58  E-value=6.9  Score=30.55  Aligned_cols=97  Identities=10%  Similarity=0.109  Sum_probs=64.6

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhc
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVK  125 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~  125 (179)
                      ++.|+ .|+++.+.-+.   +++...   +....-+.|-..|-|...++++|   .+.|.++. =.|...-++++...+.
T Consensus        21 e~Ry~-~LI~lgk~Lp~---lpe~~r---~~~~~V~GCqS~VWl~~~~~~~g---~~~f~~dSDa~ivkGl~alL~~~~~   90 (138)
T PRK09296         21 EEKYL-YIIELGQRLPP---LTDEDR---SPQNLIQGCQSQVWIVMRQNAQG---IIELQGDSDAAIVKGLIAVVFILYQ   90 (138)
T ss_pred             HHHHH-HHHHHHhhCCC---CCHHHc---CccccCCCcccceeeeEeecCCC---EEEEEEecccHHHHHHHHHHHHHHc
Confidence            44554 45777665433   333211   01112358988888877776556   34666664 3577788999999999


Q ss_pred             CCCHHHHHHhhhHhHHhhcC----CCCCcchh
Q psy10992        126 GKTVDEALKLKNTDIAKELC----LPPVKLHC  153 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i~~~L~----~~~~R~~C  153 (179)
                      |+|++|+.+++..++.+.||    +.|.|.+=
T Consensus        91 g~tp~eIl~~d~~~~~~~lGL~~~LSpsR~nG  122 (138)
T PRK09296         91 QMTPQDIVNFDVRPWFEKLALTQHLTPSRSQG  122 (138)
T ss_pred             CCCHHHHHhCChHHHHHHcCcccccCccHHHH
Confidence            99999999999765556676    57888873

>PLN02673 quinolinate synthetase A

Probab=88.57  E-value=12  Score=36.58  Aligned_cols=81  Identities=17%  Similarity=0.170  Sum_probs=59.4

Q ss_pred             CCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCCHHHHHHhhhHhHHhhc--CC---CCCcchhhHH
Q psy10992         82 PACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL--CL---PPVKLHCSML  156 (179)
Q Consensus        82 p~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKtl~Ea~~i~~~~i~~~L--~~---~~~R~~CA~L  156 (179)
                      +.|-..|-|...++++|+ ..+.+..++ .|...-+.++.+.+.|+|.+|+++++.+++ ..|  |+   .|+|..=..-
T Consensus       127 ~GCQSqVWL~~eldddGk-v~F~ADSDA-~IVKGL~ALLl~~lsG~TpeEILavD~d~~-~~LGLGL~~~SPSRsNGL~n  203 (724)
T PLN02673        127 MGCTAQVWLEAELDQDGK-MRFWADSDS-EITKGFCSCLIWVLDGASPEEVLELKTEDL-AALNVGLPGGERSRVNTWHN  203 (724)
T ss_pred             CCcccceEEEEEEcCCCE-EEEEEeCcc-HHHHHHHHHHHHHHcCCCHHHHHhCCHHHH-HHHhhhhcccCCchhHHHHH
Confidence            589998988888765564 345555666 889999999999999999999999999877 444  32   7888874444


Q ss_pred             HHHHHHHHH
Q psy10992        157 AEDAIKAAL  165 (179)
Q Consensus       157 a~~AL~~Al  165 (179)
                      ..+++++..
T Consensus       204 ML~~Iq~~A  212 (724)
T PLN02673        204 VLVSMQKRT  212 (724)
T ss_pred             HHHHHHHHH
Confidence            444443333

>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.66  E-value=6.4  Score=31.16  Aligned_cols=69  Identities=23%  Similarity=0.280  Sum_probs=53.6

Q ss_pred             CCCCCcEEEEEEEECCCCcEEEeEEeeccc-hHHHHHHHHHHHHhcCCCHHHHHHhhhHhHHhhcC----CCCCcch
Q psy10992         81 APACGDVMKLQIKVDDNGKIIDAKFKTFGC-GSAIASSSLATEWVKGKTVDEALKLKNTDIAKELC----LPPVKLH  152 (179)
Q Consensus        81 np~CGD~I~l~l~i~~~g~I~di~F~~~GC-ais~ASASil~e~~~GKtl~Ea~~i~~~~i~~~L~----~~~~R~~  152 (179)
                      -+.|-..|-|....+++|   .+.|.|+.= .|...-++++.+.+.|+|.+|+..++..++.+.||    +.|.|..
T Consensus        53 V~GC~S~vwL~~~~~~~~---~~~F~gdSdA~ivrGL~aill~~~~G~t~~eI~~~~~~~~f~~LGL~~~LSpsR~n  126 (144)
T COG2166          53 VPGCQSQVWLVTEQNDDG---TLHFFGDSDARIVRGLLAILLAAYSGKTAAEILAFDPLDFFEELGLAQHLSPSRSN  126 (144)
T ss_pred             CCccccceeEEEeecCCc---eEEEeccchhHHHHHHHHHHHHHHcCCCHHHHHcCCHHHHHHHhhHHHhcChHHhh
Confidence            357888887777765433   457777754 46778889999999999999999999977777776    5788876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
1wfz_A	130	Solution Structure Of Iron-Sulfur Cluster Protein U		3e-57
1q48_A	134	Solution Nmr Structure Of The Haemophilus Influenza		5e-55
2l4x_A	128	Solution Structure Of Apo-Iscu(Wt) Length = 128		1e-53
3lvl_A	129	Crystal Structure Of E.Coli Iscs-Iscu Complex Lengt		2e-53
2kqk_A	128	Solution Structure Of Apo-Iscu(D39a) Length = 128		1e-52
4eb5_C	153	A. Fulgidus Iscs-Iscu Complex Structure Length = 15		2e-30
2z7e_A	157	Crystal Structure Of Aquifex Aeolicus Iscu With Bou		2e-28
2qq4_A	138	Crystal Structure Of Iron-Sulfur Cluster Biosynthes		9e-13
1xjs_A	147	Solution Structure Of Iron-Sulfur Cluster Assembly		3e-11
1su0_B	159	Crystal Structure Of A Hypothetical Protein At 2.3		3e-09

>pdb|1WFZ|A Chain A, Solution Structure Of Iron-Sulfur Cluster Protein U (Iscu) Length = 130

Iteration: 1
 Score =  217 bits (552), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 102/116 (87%), Positives = 111/116 (95%)
Query: 59  ENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSS 118
           ENPRNVGSLDK  KNVGTGLVGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSS
Sbjct: 8   ENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSS 67
Query: 119 LATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNS 174
           LATEWVKGKTV+EAL +KNTDIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ S
Sbjct: 68  LATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQES 123

>pdb|1Q48|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron- Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound At The Active Site. Northeast Structural Genomics Consortium Target Ir24. This Protein Is Not Apo, It Is A Model Without Zinc Binding Constraints. Length = 134

Iteration: 1
 Score =  209 bits (533), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 113/125 (90%)
Query: 48  LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
           + Y E VIDHYENPRNVGSLDKKD NVGTG+VGAPACGDVM+LQIKVDDNG I DAKFKT
Sbjct: 1   MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
           +GCGSAIASSSL TEWVKGK+++EA  +KN+ IA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61  YGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIAD 120
Query: 168 YRIKQ 172
           Y+ KQ
Sbjct: 121 YKAKQ 125

>pdb|2L4X|A Chain A, Solution Structure Of Apo-Iscu(Wt) Length = 128

Iteration: 1
 Score =  205 bits (521), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 112/127 (88%)
Query: 48  LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
           + Y E VIDHYENPRNVGS D  D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT
Sbjct: 1   MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
           +GCGSAIASSSL TEWVKGK++DEA  +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120
Query: 168 YRIKQNS 174
           Y+ K+ +
Sbjct: 121 YKSKREA 127

>pdb|3LVL|A Chain A, Crystal Structure Of E.Coli Iscs-Iscu Complex Length = 129

Iteration: 1
 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/125 (75%), Positives = 111/125 (88%)
Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E VIDHYENPRNVGS D  D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT+G
Sbjct: 4   YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYG 63
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
           CGSAIASSSL TEWVKGK++DEA  +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++DY+
Sbjct: 64  CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYK 123
Query: 170 IKQNS 174
            K+ +
Sbjct: 124 SKREA 128

>pdb|2KQK|A Chain A, Solution Structure Of Apo-Iscu(D39a) Length = 128

Iteration: 1
 Score =  201 bits (512), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 93/127 (73%), Positives = 111/127 (87%)
Query: 48  LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
           + Y E VIDHYENPRNVGS D  D+NVG+G+VGAPACG VMKLQIKV+D G I DA+FKT
Sbjct: 1   MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGAVMKLQIKVNDEGIIEDARFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
           +GCGSAIASSSL TEWVKGK++DEA  +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120
Query: 168 YRIKQNS 174
           Y+ K+ +
Sbjct: 121 YKSKREA 127

>pdb|4EB5|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure Length = 153

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 85/120 (70%), Gaps = 5/120 (4%)
Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y + V DH++NPRNVG ++  D   G G VG P CGD+M + IKV DN +I D KF+TFG
Sbjct: 2   YSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVKDN-RIEDIKFQTFG 57
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSDY 168
           C +AIA+SS+ATE  KGKT++EALK+    +A+ L  LP  K+HCS LA DA++ A+ DY
Sbjct: 58  CAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDY 117

>pdb|2Z7E|A Chain A, Crystal Structure Of Aquifex Aeolicus Iscu With Bound [2fe- 2s] Cluster Length = 157

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/133 (50%), Positives = 84/133 (63%), Gaps = 5/133 (3%)
Query: 48  LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFK 106
             Y+E V+DH+ NPRNVG L+  D N G G  G PACG  M   IKV+ +N  I D +FK
Sbjct: 3   FEYNEKVLDHFLNPRNVGVLE--DAN-GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFK 59
Query: 107 TFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAAL 165
           TFGCGSAIA SS+ TE VKGK +  AL L   DI +EL  LPP K+HC+ L  + +  A+
Sbjct: 60  TFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAI 119
Query: 166 SDYRIKQNSAKAA 178
            DY +KQ   + A
Sbjct: 120 KDYLMKQGRVEEA 132

>pdb|2QQ4|A Chain A, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8 Length = 138

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E ++DHY++PRN G L +  K  G G+   P+CGD +++ + ++ +  I D +F+  G
Sbjct: 8   YREILLDHYQSPRNFGVLPQATKQAG-GM--NPSCGDQVEVMVLLEGD-TIADIRFQGQG 63
Query: 110 CGSAIASSSLATEWVKGKTVDEALKL 135
           C  + AS+SL TE VKGK V EAL+L
Sbjct: 64  CAISTASASLMTEAVKGKKVAEALEL 89

>pdb|1XJS|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein Iscu From Bacillus Subtilis, With Zinc Bound At The Active Site. Northeast Structural Genomics Consortium Target Sr17 Length = 147

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 13/90 (14%)
Query: 50  YHENVIDHYENPRNVGSLDKK---DKNVGTGLVGAPACGDVMKLQIKVDDNGKII-DAKF 105
           Y + ++DHY+NPRN G L+     D N        P CGD ++L +K+D  G I+ DAKF
Sbjct: 11  YRQVIMDHYKNPRNKGVLNDSIVVDMN-------NPTCGDRIRLTMKLD--GDIVEDAKF 61
Query: 106 KTFGCGSAIASSSLATEWVKGKTVDEALKL 135
           +  GC  ++AS+S+ T+ +KGK ++ AL +
Sbjct: 62  EGEGCSISMASASMMTQAIKGKDIETALSM 91

>pdb|1SU0|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.3 A Resolution Length = 159

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 28/137 (20%)
Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y   V DH + P + G LD     V    +  P CGDV+ L +K D++ KI D  F   G
Sbjct: 10  YMAVVADHSKRPHHHGQLD----GVEAVQLNNPTCGDVISLTVKFDED-KIEDIAFAGNG 64
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLP---------------------P 148
           C  + ASSS+ T+ V GK+ +EAL L   DI  E+                        P
Sbjct: 65  CTISTASSSMMTDAVIGKSKEEALAL--ADIFSEMVQGQENPAQKELGEAELLAGVAKFP 122
Query: 149 VKLHCSMLAEDAIKAAL 165
            ++ CS LA +A+K A+
Sbjct: 123 QRIKCSTLAWNALKEAI 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
3lvl_A	129	NIFU-like protein; protein-protein complex, struct	1e-71
2z7e_A	157	ISCU protein, NIFU-like protein; iron-sulfur clust	4e-68
4eb5_C	153	NIFU protein (NIFU-1); scaffold, transferase-metal	4e-65
1su0_B	159	NIFU like protein ISCU; structural genomics, BSGC	2e-53
2qq4_A	138	Iron-sulfur cluster biosynthesis protein ISCU; zin	4e-47
1xjs_A	147	NIFU-like protein; SR17, structure, autostructure,	7e-47
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A Length = 129

 Score =  211 bits (540), Expect = 1e-71
 Identities = 94/125 (75%), Positives = 111/125 (88%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E VIDHYENPRNVGS D  D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT+G
Sbjct: 4   YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYG 63

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
           CGSAIASSSL TEWVKGK++DEA  +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++DY+
Sbjct: 64  CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYK 123

Query: 170 IKQNS 174
            K+ +
Sbjct: 124 SKREA 128

>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} Length = 157

 Score =  203 bits (518), Expect = 4e-68
 Identities = 65/132 (49%), Positives = 83/132 (62%), Gaps = 5/132 (3%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFKTF 108
           Y+E V+DH+ NPRNVG L+  +   G G  G PACG  M   IKV+ +N  I D +FKTF
Sbjct: 5   YNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTF 61

Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSD 167
           GCGSAIA SS+ TE VKGK +  AL L   DI +EL  LPP K+HC+ L  + +  A+ D
Sbjct: 62  GCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKD 121

Query: 168 YRIKQNSAKAAQ 179
           Y +KQ   + A 
Sbjct: 122 YLMKQGRVEEAS 133

>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C* Length = 153

 Score =  195 bits (498), Expect = 4e-65
 Identities = 64/129 (49%), Positives = 85/129 (65%), Gaps = 5/129 (3%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y + V DH++NPRNVG ++  D   G G VG P CGD+M + IKV D  +I D KF+TFG
Sbjct: 2   YSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVKD-NRIEDIKFQTFG 57

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSDY 168
           C +AIA+SS+ATE  KGKT++EALK+    +A+ L  LP  K+HCS LA DA++ A+ DY
Sbjct: 58  CAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDY 117

Query: 169 RIKQNSAKA 177
             K      
Sbjct: 118 FRKNGKIDK 126

>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2 Length = 159

 Score =  166 bits (422), Expect = 2e-53
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 24/146 (16%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y   V DH + P + G LD     V    +  P CGDV+ L +K D+  KI D  F   G
Sbjct: 10  YMAVVADHSKRPHHHGQLD----GVEAVQLNNPTCGDVISLTVKFDE-DKIEDIAFAGNG 64

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNT-------------------DIAKELCLPPVK 150
           C  + ASSS+ T+ V GK+ +EAL L +                    ++   +   P +
Sbjct: 65  CTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQR 124

Query: 151 LHCSMLAEDAIKAALSDYRIKQNSAK 176
           + CS LA +A+K A+      Q+   
Sbjct: 125 IKCSTLAWNALKEAIKRSANAQHLTD 150

>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus} Length = 138

 Score =  149 bits (378), Expect = 4e-47
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 22/134 (16%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E ++DHY++PRN G L +  K  G      P+CGD +++ + ++    I D +F+  G
Sbjct: 8   YREILLDHYQSPRNFGVLPQATKQAG---GMNPSCGDQVEVMVLLEG-DTIADIRFQGQG 63

Query: 110 CGSAIASSSLATEWVKGKTVDEALKL-------------KNTDIAKELCLP-----PVKL 151
           C  + AS+SL TE VKGK V EAL+L              +  +   L L      P ++
Sbjct: 64  CAISTASASLMTEAVKGKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPARV 123

Query: 152 HCSMLAEDAIKAAL 165
            C+ LA  A++ AL
Sbjct: 124 KCATLAWHALEEAL 137

>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A Length = 147

 Score =  149 bits (378), Expect = 7e-47
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 24/141 (17%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y + ++DHY+NPRN G L+          +  P CGD ++L +K+D    + DAKF+  G
Sbjct: 11  YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLDG-DIVEDAKFEGEG 65

Query: 110 CGSAIASSSLATEWVKGKTVDEALK-------------------LKNTDIAKELCLPPVK 150
           C  ++AS+S+ T+ +KGK ++ AL                    L + +  + +   P +
Sbjct: 66  CSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPAR 125

Query: 151 LHCSMLAEDAIKAALSDYRIK 171
           + C+ L+  A++  ++     
Sbjct: 126 IKCATLSWKALEKGVAKEEGG 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 9e-06
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 57/203 (28%)

Query: 2   SILLNKEMKTQLHFK-FSCSLHSSGGTCRTNNAT-----TLLK--SPKWASTPVLHYHEN 53
            + L+ +++ ++ FK F  +L      C +          LL    P W S         
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNL----KNCNSPETVLEMLQKLLYQIDPNWTSRS------- 217

Query: 54  VIDHYENPR-NVGSLDKKDKNVGTGLVGA--PACGDVMKLQIKVDD--NGKIIDAKFKTF 108
             DH  N +  + S+  + + +   L       C     L + + +  N K  +A F   
Sbjct: 218 --DHSSNIKLRIHSIQAELRRL---LKSKPYENC-----LLV-LLNVQNAKAWNA-FN-L 264

Query: 109 GC---------------GSAIASSSLATEWVKGKTVDEALKL--KNTDIAKELCLPPVKL 151
            C                +A  +           T DE   L  K  D   +  LP   L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVL 323

Query: 152 HCSMLAEDAIKAALSDY--RIKQ 172
             +      I  ++ D       
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDN 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
3lvl_A	129	NIFU-like protein; protein-protein complex, struct	100.0
4eb5_C	153	NIFU protein (NIFU-1); scaffold, transferase-metal	100.0
2z7e_A	157	ISCU protein, NIFU-like protein; iron-sulfur clust	100.0
2qq4_A	138	Iron-sulfur cluster biosynthesis protein ISCU; zin	100.0
1xjs_A	147	NIFU-like protein; SR17, structure, autostructure,	100.0
1su0_B	159	NIFU like protein ISCU; structural genomics, BSGC	100.0
3g0m_A	141	Cysteine desulfuration protein SUFE; YNHA, csgid,	93.82
1ni7_A	155	ER75, hypothetical protein YGDK; RD-structural gen	91.41
1wlo_A	136	SUFE protein; structural genomics, riken structura	81.33

>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A

Probab=100.00  E-value=9.1e-44  Score=273.33  Aligned_cols=127  Identities=74%  Similarity=1.186  Sum_probs=119.0

Q ss_pred             hhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCC
Q psy10992         48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGK  127 (179)
Q Consensus        48 ~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GK  127 (179)
                      ++|+++|+|||+||+|+|.+++|+..+++++.+||+|||+|+|||+|+++|+|+|++|+++||++++||+|+|+++++||
T Consensus         2 ~~Y~~~Ildh~~~P~n~g~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gk   81 (129)
T 3lvl_A            2 SAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGK   81 (129)
T ss_dssp             -CCCHHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHhCCCCCCCCCCCCcceeEEEecCCCCCCEEEEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999866567788999999999999999745899999999999999999999999999999


Q ss_pred             CHHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHhchh
Q psy10992        128 TVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNS  174 (179)
Q Consensus       128 tl~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k~~~  174 (179)
                      |++||..|.++++.+.|++||+|++|++|+|+||++||.+|+.|+.+
T Consensus        82 t~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~y~~k~~~  128 (129)
T 3lvl_A           82 SLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREA  128 (129)
T ss_dssp             CHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred             cHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999988754

>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*

Probab=100.00  E-value=1.3e-41  Score=268.12  Aligned_cols=125  Identities=50%  Similarity=0.883  Sum_probs=117.1

Q ss_pred             hhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCC
Q psy10992         49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKT  128 (179)
Q Consensus        49 lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKt  128 (179)
                      +|+++|+|||+||+|+|.+++|+   +++..+||+|||+|+|||+|+ +|+|+|++|+++||+++|||||+|+++++|||
T Consensus         1 lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~nP~CGD~i~l~lkv~-d~~I~D~~F~g~GCais~ASaS~mtelv~GKt   76 (153)
T 4eb5_C            1 MYSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVK-DNRIEDIKFQTFGCAAAIATSSMATEMAKGKT   76 (153)
T ss_dssp             -CCHHHHHHHHSCSSBSCCSSCS---EEEEEECTTTCCEEEEEEEES-SSBEEEEEEEEESCHHHHHHHHHHHHHHTTCB
T ss_pred             CcHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEec-CCeEEEEEEEEeCcHHHHHHHHHHHHHHcCCC
Confidence            69999999999999999999998   356889999999999999997 68999999999999999999999999999999


Q ss_pred             HHHHHHhhhHhHHhhc-CCCCCcchhhHHHHHHHHHHHHHHHHhchhhhh
Q psy10992        129 VDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSDYRIKQNSAKA  177 (179)
Q Consensus       129 l~Ea~~i~~~~i~~~L-~~~~~R~~CA~La~~AL~~Al~~y~~k~~~~~~  177 (179)
                      ++||..|..+++.+.| ++||+|+||++|+|+||++||.+|+.+++..++
T Consensus        77 leEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~y~~k~~~~~~  126 (153)
T 4eb5_C           77 IEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRKNGKIDK  126 (153)
T ss_dssp             HHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence            9999999999998889 699999999999999999999999998776544

>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}

Probab=100.00  E-value=3.3e-41  Score=266.95  Aligned_cols=127  Identities=50%  Similarity=0.864  Sum_probs=118.6

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEEC-CCCcEEEeEEeeccchHHHHHHHHHHHHhc
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFKTFGCGSAIASSSLATEWVK  125 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~-~~g~I~di~F~~~GCais~ASASil~e~~~  125 (179)
                      .++|+++|++||+||+|+|.+++|+   +++..+||+|||+|+|||+|+ ++|+|+|++|+++||+++|||+|+|+++++
T Consensus         2 ~~lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~   78 (157)
T 2z7e_A            2 SFEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVK   78 (157)
T ss_dssp             TTHHHHHHHHHHHSCSSBSCCTTCS---EEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999998   467889999999999999995 478999999999999999999999999999


Q ss_pred             CCCHHHHHHhhhHhHHhhc-CCCCCcchhhHHHHHHHHHHHHHHHHhchhhh
Q psy10992        126 GKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK  176 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i~~~L-~~~~~R~~CA~La~~AL~~Al~~y~~k~~~~~  176 (179)
                      |||++||..|.++++.+.| ++||+|++|++|+|+||++||.+|+.+++..+
T Consensus        79 Gkt~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~y~~k~~~~~  130 (157)
T 2z7e_A           79 GKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGRVE  130 (157)
T ss_dssp             TSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTTCHH
T ss_pred             CCcHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHHHHHhcCCcc
Confidence            9999999999999888889 69999999999999999999999998876543

>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-38  Score=245.96  Aligned_cols=116  Identities=37%  Similarity=0.558  Sum_probs=105.1

Q ss_pred             hHhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhc
Q psy10992         46 PVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVK  125 (179)
Q Consensus        46 ~~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~  125 (179)
                      +.++|+++|+|||+||+|+|.+++|+   ++++.+||+|||+|+|||+|+ +|+|+|++|+++||++++||+|+|+++++
T Consensus         4 l~~lY~~~Ildh~~nP~n~G~l~~~~---~~~~~~np~CGD~i~l~l~v~-~~~I~d~~f~~~GCais~ASaS~~te~i~   79 (138)
T 2qq4_A            4 LDELYREILLDHYQSPRNFGVLPQAT---KQAGGMNPSCGDQVEVMVLLE-GDTIADIRFQGQGCAISTASASLMTEAVK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHSCTTBSCCTTCS---EEEEEECTTTCCEEEEEEEEE-TTEEEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCC---eEEeeCCCCCCCEEEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999988   456889999999999999996 68999999999999999999999999999


Q ss_pred             CCCHHHHHHhhhHhHH---------------hhc---CCCCCcchhhHHHHHHHHHHH
Q psy10992        126 GKTVDEALKLKNTDIA---------------KEL---CLPPVKLHCSMLAEDAIKAAL  165 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i~---------------~~L---~~~~~R~~CA~La~~AL~~Al  165 (179)
                      |||++||..|.+.++.               +.|   ..+|+|+||++|+|+||++||
T Consensus        80 Gkt~~ea~~i~~~~~~ml~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al  137 (138)
T 2qq4_A           80 GKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEEAL  137 (138)
T ss_dssp             TSBHHHHHHHHHHHHHHHTTCCCCCGGGGGGGGGGGGGGCGGGHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCchhhhhHHhhccCcccCcchhhHHHHHHHHHHHHh
Confidence            9999999999986521               112   247999999999999999997

>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A

Probab=100.00  E-value=2e-38  Score=248.39  Aligned_cols=121  Identities=31%  Similarity=0.546  Sum_probs=107.7

Q ss_pred             cchHhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHH
Q psy10992         44 STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEW  123 (179)
Q Consensus        44 ~~~~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~  123 (179)
                      ++++++|+++|+|||+||+|+|.+ +|+   ++++.+||+|||+|+|||+|+ +|+|+|++|+++||+++|||+|+|+++
T Consensus         5 ~~l~~lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~-~~~I~d~~f~~~GCais~ASaS~mte~   79 (147)
T 1xjs_A            5 ANLDTLYRQVIMDHYKNPRNKGVL-NDS---IVVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQA   79 (147)
T ss_dssp             TTTHHHHHHHHHHHHHSCCCCCCC-CSS---EEEEEEETTTTEEEEEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEEC-CCeEEEEEEEecCCHHHHHHHHHHHHH
Confidence            457899999999999999999999 887   456889999999999999996 689999999999999999999999999


Q ss_pred             hcCCCHHHHHHhhhHhHH----------hhc---------CCCCCcchhhHHHHHHHHHHHHHHH
Q psy10992        124 VKGKTVDEALKLKNTDIA----------KEL---------CLPPVKLHCSMLAEDAIKAALSDYR  169 (179)
Q Consensus       124 ~~GKtl~Ea~~i~~~~i~----------~~L---------~~~~~R~~CA~La~~AL~~Al~~y~  169 (179)
                      ++|||++||..|.+.+..          +.|         ..+|+|+||++|+|+||++||.+|+
T Consensus        80 v~Gkt~~Ea~~i~~~~~~ml~~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al~~~e  144 (147)
T 1xjs_A           80 IKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEKGVAKEE  144 (147)
T ss_dssp             HTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHHHHSCSTT
T ss_pred             HcCCcHHHHHHHHHHHHHHHhCCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHHhh
Confidence            999999999999986321          112         3479999999999999999997664

>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2

Probab=100.00  E-value=1.2e-37  Score=246.87  Aligned_cols=118  Identities=37%  Similarity=0.518  Sum_probs=105.4

Q ss_pred             hHhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhc
Q psy10992         46 PVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVK  125 (179)
Q Consensus        46 ~~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~  125 (179)
                      ++++|+++|+|||+||+|+|.+ +|+.   +++.+||+|||+|+|||+|+ +|+|+|++|+++||+++|||+|+|+++++
T Consensus         6 l~~lY~~~Ildh~~nP~n~G~l-~~~~---~~~~~np~CGD~i~l~lkv~-~g~I~d~~F~~~GCais~ASaS~mte~v~   80 (159)
T 1su0_B            6 LNHLYMAVVADHSKRPHHHGQL-DGVE---AVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVI   80 (159)
T ss_dssp             CCHHHHHHHHHHHHSCSSBSCC-TTCC---CEEEECSSSCCEEEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCCCC-CCCe---EEeecCCCCCCEEEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999 9883   56789999999999999997 68999999999999999999999999999


Q ss_pred             CCCHHHHHHhhhHhH--------H--hhc---------CCCCCcchhhHHHHHHHHHHHHHH
Q psy10992        126 GKTVDEALKLKNTDI--------A--KEL---------CLPPVKLHCSMLAEDAIKAALSDY  168 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i--------~--~~L---------~~~~~R~~CA~La~~AL~~Al~~y  168 (179)
                      |||++||..|.+.+.        .  +.|         ..+|+|++|++|+|+||++||.++
T Consensus        81 Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~l~~l~gv~~~p~R~~Ca~La~~Al~~Al~~~  142 (159)
T 1su0_B           81 GKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAIKRS  142 (159)
T ss_dssp             TCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHhh
Confidence            999999999988632        1  223         236999999999999999999775

>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A

Probab=93.82  E-value=1.1  Score=34.01  Aligned_cols=96  Identities=10%  Similarity=0.149  Sum_probs=67.3

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhc
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVK  125 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~  125 (179)
                      ++.|+ .|+++.+.-+-   +++...   +-...-+.|-..|-|...++++|+   +.|.+.. =.|...-.+++.+.+.
T Consensus        24 e~Ry~-~LI~lgk~Lp~---lpe~~k---~~~~~V~GCqS~VWl~~~~~~~g~---l~f~adSDA~IvkGl~alL~~~~~   93 (141)
T 3g0m_A           24 EEKYL-YIIELGQRLAE---LNPQDR---NPQNTIHGCQSQVWIVMRRNANGI---IELQGDSDAAIVKGLMAVVFILYH   93 (141)
T ss_dssp             HHHHH-HHHHHHHTSCC---CCGGGC---SGGGBCCSSSSCEEEEEEECTTSB---EEEEEEESSHHHHHHHHHHHHHHT
T ss_pred             HHHHH-HHHHHHccCCC---CCHHHc---CccCcCCCCccCeeEEEEEcCCCE---EEEEecCccHHHHHHHHHHHHHHc
Confidence            45564 46778776332   222211   111234689999999988865675   5787764 4578889999999999


Q ss_pred             CCCHHHHHHhhhHhHHhhcC----CCCCcch
Q psy10992        126 GKTVDEALKLKNTDIAKELC----LPPVKLH  152 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i~~~L~----~~~~R~~  152 (179)
                      |+|.+|+..++..++.+.||    +.|.|.+
T Consensus        94 G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~n  124 (141)
T 3g0m_A           94 QMTAQDIVHFDVRPWFEKMALAQHLTPSRSQ  124 (141)
T ss_dssp             TCBHHHHHHCCCHHHHHHHTCGGGSCHHHHH
T ss_pred             CCCHHHHHhCCHHHHHHHcCchhhcCchHHH
Confidence            99999999999955566666    4688876

>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1

Probab=91.41  E-value=1.2  Score=34.41  Aligned_cols=81  Identities=20%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             CCCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhcCCCHHHHHHhhhHhHHhhcC----CCCCcchhhH
Q psy10992         81 APACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELC----LPPVKLHCSM  155 (179)
Q Consensus        81 np~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~GKtl~Ea~~i~~~~i~~~L~----~~~~R~~CA~  155 (179)
                      -+.|-..|-|+..++++|   .+.|.++. =.|...-++++.+.+.|+|.+|+.+++..++.+.||    +.|.|.+   
T Consensus        58 V~GCqS~VWl~~~~~~dg---~l~F~adSDA~IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~N---  131 (155)
T 1ni7_A           58 IAGCENRVWLGYTVAENG---KMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQ---  131 (155)
T ss_dssp             ECSSSSCEEEECCCCSSS---CCCCEEEESSHHHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHH---
T ss_pred             CCCCccCeeEEEEEcCCC---EEEEeeCCccHHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCchHHH---
Confidence            368999998887654456   35777764 467889999999999999999999999975566676    4677876   


Q ss_pred             HHHHHHHHHHHHH
Q psy10992        156 LAEDAIKAALSDY  168 (179)
Q Consensus       156 La~~AL~~Al~~y  168 (179)
                       ++.++.+.|+.+
T Consensus       132 -Gl~am~~~ik~~  143 (155)
T 1ni7_A          132 -GLNALSEAIIAA  143 (155)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHH
Confidence             445555555443

>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}

Probab=81.33  E-value=1.7  Score=32.70  Aligned_cols=105  Identities=13%  Similarity=0.166  Sum_probs=69.8

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhc
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVK  125 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~  125 (179)
                      ++.|+- |+++.+.-+-.   ++.. .    ...-+.|-..|-|+..++++|  ..+.|.+.. =.|...-++++.+.+.
T Consensus        19 e~Ry~~-LI~lgk~Lp~l---pe~~-~----~~~V~GCqS~VWl~~~~~~~g--~~l~f~~dSDA~IvkGl~alL~~~~~   87 (136)
T 1wlo_A           19 ELRSQV-LLEYAAKVPPP---PPGV-E----LERVHECQTPFFVHADVEGGK--VRLYFHVPDEAPTVKAFAGLLREGLE   87 (136)
T ss_dssp             HHHHHH-HHHHHHTCCCC---CSSC-C----CEECTTSSSCCEEEEEEETTE--EEEEEECSSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHH-HHHHHhhCCCC---Chhh-h----hccCCCCccCeEEEEEEeCCc--eEEEEecCCccHHHHHHHHHHHHHHc
Confidence            455654 56776654322   2211 0    122458999998888765444  257888875 4578889999999999


Q ss_pred             CCCHHHHHHhhhHhHHhhcC----CCCCcchhhHHHHHHHHHHHHH
Q psy10992        126 GKTVDEALKLKNTDIAKELC----LPPVKLHCSMLAEDAIKAALSD  167 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i~~~L~----~~~~R~~CA~La~~AL~~Al~~  167 (179)
                      |+|.+|+.+++.+ +.+.||    +.|.|.+    ++.++-+.|+.
T Consensus        88 G~tp~eIl~~d~~-~~~~lGL~~~LSpsR~n----Gl~am~~~ik~  128 (136)
T 1wlo_A           88 GESPEAVLEVPPG-FYRGYGLEEFFTPLRLR----GLEAALLRLQA  128 (136)
T ss_dssp             TCCTTTTTSSCTT-TTTTTTSHHHHTHHHHH----HHHHHHHHHHH
T ss_pred             CCCHHHHHhCCHH-HHHHcCchhhcCchHHH----HHHHHHHHHHH
Confidence            9999999999995 556666    4777876    34444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1wfza_	130	d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU	5e-54
d1r9pa_	134	d.224.1.2 (A:) NifU-like protein HI0377 {Haemophil	5e-52
d1xjsa_	147	d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 142	2e-32
d1su0b_	136	d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus	5e-29

>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: Iron-sulfur cluster protein U (IscU)
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

 Score =  165 bits (420), Expect = 5e-54
 Identities = 102/122 (83%), Positives = 111/122 (90%)

Query: 56  DHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIA 115
              ENPRNVGSLDK  KNVGTGLVGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIA
Sbjct: 5   SSGENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIA 64

Query: 116 SSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSA 175
           SSSLATEWVKGKTV+EAL +KNTDIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ S 
Sbjct: 65  SSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESK 124

Query: 176 KA 177
             
Sbjct: 125 SG 126

>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Length = 134

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU-like protein HI0377
species: Haemophilus influenzae [TaxId: 727]

 Score =  160 bits (407), Expect = 5e-52
 Identities = 98/124 (79%), Positives = 112/124 (90%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y E VIDHYENPRNVGSLDKKD NVGTG+VGAPACGDVM+LQIKVDDNG I DAKFKT+G
Sbjct: 3   YSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKTYG 62

Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
           CGSAIASSSL TEWVKGK+++EA  +KN+ IA+EL LPPVK+HCS+LAEDAIKAA++DY+
Sbjct: 63  CGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYK 122

Query: 170 IKQN 173
            KQ 
Sbjct: 123 AKQG 126

>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]} Length = 147

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU
species: Bacillus subtilis [TaxId: 1423]

 Score =  111 bits (278), Expect = 2e-32
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 24/139 (17%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y + ++DHY+NPRN G L+          +  P CGD ++L +K+D    + DAKF+  G
Sbjct: 11  YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEG 65

Query: 110 CGSAIASSSLATEWVKGKTVDEALK-------------------LKNTDIAKELCLPPVK 150
           C  ++AS+S+ T+ +KGK ++ AL                    L + +  + +   P +
Sbjct: 66  CSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPAR 125

Query: 151 LHCSMLAEDAIKAALSDYR 169
           + C+ L+  A++  ++   
Sbjct: 126 IKCATLSWKALEKGVAKEE 144

>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]} Length = 136

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: IscU homolog SPy0289
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  102 bits (255), Expect = 5e-29
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 24/135 (17%)

Query: 50  YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
           Y   V DH + P + G LD     V    +  P CGDV+ L +K D++ KI D  F   G
Sbjct: 5   YMAVVADHSKRPHHHGQLD----GVEAVQLNNPTCGDVISLTVKFDED-KIEDIAFAGNG 59

Query: 110 CGSAIASSSLATEWVKGKTVDEALK-------------------LKNTDIAKELCLPPVK 150
           C  + ASSS+ T+ V GK+ +EAL                    L   ++   +   P +
Sbjct: 60  CTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQR 119

Query: 151 LHCSMLAEDAIKAAL 165
           + CS LA +A+K A+
Sbjct: 120 IKCSTLAWNALKEAI 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1r9pa_	134	NifU-like protein HI0377 {Haemophilus influenzae [	100.0
d1wfza_	130	Iron-sulfur cluster protein U (IscU) {Mouse (Mus m	100.0
d1xjsa_	147	NifU {Bacillus subtilis [TaxId: 1423]}	100.0
d1su0b_	136	IscU homolog SPy0289 {Streptococcus pyogenes [TaxI	100.0
d1mzga_	144	SufE (YhnA) {Escherichia coli [TaxId: 562]}	95.3
d1ni7a_	149	Hypothetical protein YgdK {Escherichia coli [TaxId	94.54

>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU-like protein HI0377
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.6e-42  Score=265.82  Aligned_cols=129  Identities=76%  Similarity=1.176  Sum_probs=120.6

Q ss_pred             hhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCC
Q psy10992         48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGK  127 (179)
Q Consensus        48 ~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GK  127 (179)
                      +.|+++|||||+||+|+|.+++|+..+..+..+||+|||.|+||++++++++|+|++|+++||++|+||||+|+++++||
T Consensus         1 m~Y~e~Ildh~~~Prn~g~l~~~d~~~~~~~~~np~CGD~v~i~l~i~~~~~I~di~f~~~GCais~Asas~~~e~i~Gk   80 (134)
T d1r9pa_           1 MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKTYGCGSAIASSSLITEWVKGK   80 (134)
T ss_dssp             CCSCCSCCCSCSCCCCCSSSSSCCSSEEEEEEEETTTTEEEEEEEEECSSSBEEEEEEEEESSSSHHHHHHHHHHHSSSS
T ss_pred             CCcHHHHHHHhhCcCCCCCCCCCCcchhhhccCCCCcccEEEEEEEEcCCceEEEEEEEeccCcccHhHHHHHHHHHHhC
Confidence            46999999999999999999999976556677899999999999999866789999999999999999999999999999


Q ss_pred             CHHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHhchhhh
Q psy10992        128 TVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK  176 (179)
Q Consensus       128 tl~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k~~~~~  176 (179)
                      |++||..|+++++.+.|+++|+|++||+|+|+||++||.+|+.+++-+.
T Consensus        81 t~~ea~~i~~~~i~e~l~~~p~r~~Ca~L~~~al~~al~~y~~k~g~~~  129 (134)
T d1r9pa_          81 SLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQGLEH  129 (134)
T ss_dssp             BHHHHTTSHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHhcchHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            9999999999999999999999999999999999999999999976543

>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: Iron-sulfur cluster protein U (IscU)
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

Probab=100.00  E-value=2.3e-39  Score=247.41  Aligned_cols=118  Identities=86%  Similarity=1.323  Sum_probs=111.1

Q ss_pred             hCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCCHHHHHHhhhH
Q psy10992         59 ENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT  138 (179)
Q Consensus        59 ~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKtl~Ea~~i~~~  138 (179)
                      +||||+|.|++||..++.++.+||.|||.|+|||+|+++++|++++|+++||++|+||||+|+++++|||++||..|+.+
T Consensus         8 kNPrn~G~l~~~d~~~~~g~~gNP~CGD~i~i~l~v~~~~~I~di~F~~~GC~is~AsaS~~tel~~Gkt~~ea~~i~~~   87 (130)
T d1wfza_           8 ENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT   87 (130)
T ss_dssp             SCCSSCCCCCTTCSSEEEEEEEETTTTEEEEEEEEECSSSBEEEEEEECCSCHHHHHHHHHHHHHHTTSBHHHHHHCCHH
T ss_pred             CCCCCCcCCCCCCcccCccccCCCCcCcEEEEEEEecCCCeEEEEEEEeeCCchhHHHHHHHHHHHhccCHHHHHhcCcH
Confidence            79999999999997666778899999999999999976689999999999999999999999999999999999999999


Q ss_pred             hHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHhchhhh
Q psy10992        139 DIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK  176 (179)
Q Consensus       139 ~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k~~~~~  176 (179)
                      ++.+.|++||.|+|||+|+|+||++||.+|+.|+...+
T Consensus        88 ~i~~~l~l~p~R~~CA~La~~aL~~Al~~y~~k~~~~~  125 (130)
T d1wfza_          88 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKS  125 (130)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHhccCcc
Confidence            99999999999999999999999999999998876543

>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.4e-37  Score=239.88  Aligned_cols=124  Identities=29%  Similarity=0.516  Sum_probs=108.6

Q ss_pred             CcchHhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHH
Q psy10992         43 ASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATE  122 (179)
Q Consensus        43 ~~~~~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e  122 (179)
                      .+.+.++|+++|+|||+||+|+|.+++++    .++.+||.|||+|+||++++ +++|++++|+++||++|+||||+|++
T Consensus         4 ~~~~~~LY~e~Ildh~~nP~n~g~l~~~~----~~~~~Np~CGD~i~i~l~i~-~~~I~d~~f~~~GCai~~ASasil~e   78 (147)
T d1xjsa_           4 NANLDTLYRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQ   78 (147)
T ss_dssp             CTTTHHHHHHHHHHHHHSCCCCCCCCSSE----EEEEEETTTTEEEEEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCCCCCCCCCCC----EeecCCCCCCcEEEEEEEEc-CCceEEEEeeecccHHHHHHHHHHHH
Confidence            45678999999999999999999997643    24678999999999999997 68999999999999999999999999


Q ss_pred             HhcCCCHHHHHHhhhHhHH-------------------hhcCCCCCcchhhHHHHHHHHHHHHHHHHh
Q psy10992        123 WVKGKTVDEALKLKNTDIA-------------------KELCLPPVKLHCSMLAEDAIKAALSDYRIK  171 (179)
Q Consensus       123 ~~~GKtl~Ea~~i~~~~i~-------------------~~L~~~~~R~~CA~La~~AL~~Al~~y~~k  171 (179)
                      +++|||++||..+.+.+..                   ..+..+|+|++||+|||+||++||.+|+.+
T Consensus        79 ~~~gk~~~~a~~l~~~~~~~l~~~~~~~~~~~~~l~~l~~v~~~p~R~~Ca~L~~~Al~~al~~~~~~  146 (147)
T d1xjsa_          79 AIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEKGVAKEEGG  146 (147)
T ss_dssp             HHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHHHHSCSTTCC
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhcCCCCchhhhhHHHHhhCcCcCcchhHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999975421                   112458999999999999999999988754

>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: IscU homolog SPy0289
species: Streptococcus pyogenes [TaxId: 1314]

Probab=100.00  E-value=9.3e-37  Score=233.66  Aligned_cols=115  Identities=38%  Similarity=0.542  Sum_probs=102.3

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcC
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKG  126 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~G  126 (179)
                      +++|+++|||||+||+|+|.+++++.    ++.+||.|||+|+||++++ +++|++++|+++||++|+||||+|+++++|
T Consensus         2 ~~lY~~~Ildh~~nP~n~g~l~~~~~----~~~~Np~CGD~i~i~l~i~-~~~I~di~f~~~GCai~~ASasil~e~i~g   76 (136)
T d1su0b_           2 NHLYMAVVADHSKRPHHHGQLDGVEA----VQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVIG   76 (136)
T ss_dssp             CHHHHHHHHHHHHSCSSBSCCTTCCC----EEEECSSSCCEEEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCe----eeecCCCCCCEEEEEEEEc-CCeeeEEEEEeccCHHHHHHHHHHHHHHhC
Confidence            68999999999999999999998862    3578999999999999997 689999999999999999999999999999


Q ss_pred             CCHHHHHHhhhHhHH----------h------hc---CCCCCcchhhHHHHHHHHHHHH
Q psy10992        127 KTVDEALKLKNTDIA----------K------EL---CLPPVKLHCSMLAEDAIKAALS  166 (179)
Q Consensus       127 Ktl~Ea~~i~~~~i~----------~------~L---~~~~~R~~CA~La~~AL~~Al~  166 (179)
                      |+++|+..+.+.+..          +      .|   ..+|+|++||+|||+||++||+
T Consensus        77 k~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~v~~~p~R~~Ca~L~~~Al~~al~  135 (136)
T d1su0b_          77 KSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAIK  135 (136)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHhcccCCchhhhhHHHHhhCCCcCcchhHHHHHHHHHHHHHHh
Confidence            999999999875421          1      11   2478999999999999999985

>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: SufE-like
domain: SufE (YhnA)
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.15  Score=37.18  Aligned_cols=115  Identities=11%  Similarity=0.133  Sum_probs=75.3

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcC
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKG  126 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~G  126 (179)
                      .+.|+ .|+++.+.-+   .+++....   -...-+.|-..|-|....+++|+ ..+.... --.+...-++++.+.+.|
T Consensus        19 e~ry~-~Li~lgk~lp---~lp~~~k~---~~n~V~GCqS~vWl~~~~~~~~~-~~f~~dS-da~IvkGl~ail~~~~~g   89 (144)
T d1mzga_          19 EEKYL-YIIELGQRLP---ELRDEDRS---PQNSIQGCQSQVWIVMRQNAQGI-IELQGDS-DAAIVKGLIAVVFILYDQ   89 (144)
T ss_dssp             HHHHH-HHHHHHHHSC---CCCTTTSS---GGGEECSSSSCEEEEEEECSSSC-EEEEEEE-SSHHHHHHHHHHHHHTTT
T ss_pred             HHHHH-HHHHHHhcCC---CCChHHhh---hhheeccceeeEEEeeeeccCCc-eEEEeeC-chHHHHHHHHHHHHHHCC
Confidence            34454 4568876543   23332211   01123589999888888765454 3333333 347899999999999999


Q ss_pred             CCHHHHHHhhhHhHHhhcC----CCCCcchhhHHHHHHHHHHHHHHHH
Q psy10992        127 KTVDEALKLKNTDIAKELC----LPPVKLHCSMLAEDAIKAALSDYRI  170 (179)
Q Consensus       127 Ktl~Ea~~i~~~~i~~~L~----~~~~R~~CA~La~~AL~~Al~~y~~  170 (179)
                      +|.+|+..++..++.+.+|    +.|.|..=..-.++.+++....|..
T Consensus        90 ~t~~eI~~~d~~~~~~~lgL~~~Ls~sR~NGl~~mi~~ik~~A~~~~~  137 (144)
T d1mzga_          90 MTPQDIVNFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALSL  137 (144)
T ss_dssp             CCHHHHHHCCCHHHHHHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHhcChHHHHHHcCCccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998765556665    6888988666666666665555543

>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: SufE-like
domain: Hypothetical protein YgdK
species: Escherichia coli [TaxId: 562]

Probab=94.54  E-value=0.048  Score=40.20  Aligned_cols=112  Identities=21%  Similarity=0.131  Sum_probs=74.1

Q ss_pred             HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeec-cchHHHHHHHHHHHHhc
Q psy10992         47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTF-GCGSAIASSSLATEWVK  125 (179)
Q Consensus        47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~-GCais~ASASil~e~~~  125 (179)
                      .+.| +.|+++.++-..   +++...   +-...-..|-..|-|...++++|++   .|.+. -=.|...-+++++..+.
T Consensus        31 eery-~~Li~lgk~l~~---l~e~~k---~d~~~V~GCqS~vWl~~~~~~~g~~---~f~adSDa~IvkGl~~iL~~~~s  100 (149)
T d1ni7a_          31 EDKY-RQLIMLGKQLPA---LPDELK---AQAKEIAGCENRVWLGYTVAENGKM---HFFGDSEGRIVRGLLAVLLTAVE  100 (149)
T ss_dssp             HHHH-HHHHHHHHHSCC---CCHHHH---HHSEEECSSSSCEEEECCCCSSSCC---CCEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHH-HHHHHHHhcCCC---CChHHh---chhheeccceeEEEEEEEEccCCEE---EEEecccHHHHHHHHHHHHHHHC
Confidence            4455 566788765433   322111   0111235899998888777555643   55553 45688899999999999


Q ss_pred             CCCHHHHHHhhhHhHHhhcC----CCCCcchhhHHHHHHHHHHHHHH
Q psy10992        126 GKTVDEALKLKNTDIAKELC----LPPVKLHCSMLAEDAIKAALSDY  168 (179)
Q Consensus       126 GKtl~Ea~~i~~~~i~~~L~----~~~~R~~CA~La~~AL~~Al~~y  168 (179)
                      |+|.+|+..++..++.+.+|    +.|.|..=..-.++.+++..+++
T Consensus       101 g~t~~eI~~~~~~~~~~~lGL~~~Ls~sR~NGl~~mi~~Ik~~a~~~  147 (149)
T d1ni7a_         101 GKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQV  147 (149)
T ss_dssp             TCCHHHHHHSCTHHHHHHHTSSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHhcCHHHHHHHCCChhhCChhHHHHHHHHHHHHHHHHHHH
Confidence            99999999998876666665    46788876555555555555443