Psyllid ID: psy10998

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
APPSVAAQTQTVLPKLKHNYQEGVYTISLANYSAYHEFKYQWSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEIVLKDLSKPSYPNKNSNISHNIMPHGSRNNDILFPHYANKPGNMRQNIRQQQPVLKARSIQGGKVPKPAPKSPNIVLSISLKDDIKLRESENAWRPNNNCDEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQYEAESEKFGNVNKKPLLDKPYSLEKPMLDNDRKSAFQQQQKDWNKPNNPIYKASYQFDKTKFVSIRVSNAFKNR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccEEEEEEEcccccEEcccccccccccccEEccHHHHHHHHccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccEEHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccc
appsvaaqtqtvlpklkhnyqeGVYTISLANYsayhefkyqwspinqegvKKYSRDFLLELQFeamskpkpanlpdLEIVLKdlskpsypnknsnishnimphgsrnndilfphyankpgnmrqnIRQQQPVlkarsiqggkvpkpapkspnivlsISLKddiklresenawrpnnncdedekFYKQVRGVlnkltpenfESMKMQFkefpinttkRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREvvdetkpvnkdgkrpsvnfKNLLLNKCQKEFEKNEFeerkndikldeieaeqdPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKLLSTIGkdleshdkdptqmkGYFTTMEELASKKNSHAISSRVRFMLQDVIDlrknkwiprrnenkpkTIQQIQYEAEsekfgnvnkkplldkpyslekpmldndrKSAFQQQQkdwnkpnnpiykasyqfdktKFVSIRVSNAFKNR
appsvaaqtqtvlpklkhnyQEGVYTISLANYSAYHEFKYQWSPINQEGVKKYSRDFLLELQFEAmskpkpanlPDLEIVLKDLSKPSYPNKNSNISHNIMPHGSRNNDILFPHYANKPGNMRQNIRQQQPVLKARsiqggkvpkpapkspnivLSISLKDDIKLResenawrpnnncdedekFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDetkpvnkdgkrpsvnfknlllNKCQKEfeknefeerkndikldeieaeqdpekkkELRLMFEeeerlirkrsvgncrfIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKLLStigkdleshdkdptQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIdlrknkwiprrnenkpktiQQIQYEaesekfgnvnkkpllDKPYSLEKPMLDNDRKSAFQQqqkdwnkpnnpiykasyqfdktkfvSIRVSNAFKNR
APPSVAAQTQTVLPKLKHNYQEGVYTISLANYSAYHEFKYQWSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEIVLKDLSKPSYPNKNSNISHNIMPHGSRNNDILFPHYANKPGNMRQNIRQQQPVLKARSIQGGKVPKPAPKSPNIVLSISLKDDIKLRESENAWRPNNNCDEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQkefeknefeerknDIKLDEIEAEQDPekkkelrlmfeeeerlirKRSVGNCRFIGELYKLNMLTTKIMHHCISellkkteeepleRACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQYEAESEKFGNVNKKPLLDKPYSLEKPMLDNDRKSAFQQQQKDWNKPNNPIYKASYQFDKTKFVSIRVSNAFKNR
***********VLPKLKHNYQEGVYTISLANYSAYHEFKYQWSPINQEGVKKYSRDFLLELQFE*********************************************************************************************************************EKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVV****************FKNLLLNK******************************************RLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKT******RACKLLST***********************************SRVRFMLQDVIDLRKNKWI****************************************************************IYKASYQFDKTKFVSIRV*******
**************************************************KKYSRDFLLELQFEAMSKPKPANLPDL***********************************************************************************************************YKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEER*************************EEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEE************RVRFMLQDVIDLRKNK*******************************************************************************************
*********QTVLPKLKHNYQEGVYTISLANYSAYHEFKYQWSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEIVLKDLSKPSYPNKNSNISHNIMPHGSRNNDILFPHYANKPGNMRQNIRQQQPVLKARSIQGGKVPKPAPKSPNIVLSISLKDDIKLRESENAWRPNNNCDEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQYEAESEKFGNVNKKPLLDKPYSLEKPMLDND**********DWNKPNNPIYKASYQFDKTKFVSIRVSNAFKNR
********************QEGVYTISLANYSAYHEFKYQWSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEIVLKDLSKPSYPNKNSNISHNIMPHGSRNNDILFPH***********************************SPNIVLSISLKDDIKLRESENAWRPNNNCDEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREV*************PSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQYEAESEKF***********************************************QFDKTKFVSIRVS******
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APPSVAAQTQTVLPKLKHNYQEGVYTISLANYSAYHEFKYQWSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEIVLKDLSKPSYPNKNSNISHNIMPHGSRNNDILFPHYANKPGNMRQNIRQQQPVLKARSIQGGKVPKPAPKSPNIVLSISLKDDIKLRESENAWRPNNNCDEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFExxxxxxxxxxxxxxxxxxxxxPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQYEAESEKFGNVNKKPLLDKPYSLEKPMLDNDRKSAFQQQQKDWNKPNNPIYKASYQFDKTKFVSIRVSNAFKNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query514 2.2.26 [Sep-21-2011]
O43432 1585 Eukaryotic translation in yes N/A 0.838 0.271 0.371 7e-76
Q80XI3 1579 Eukaryotic translation in yes N/A 0.834 0.271 0.380 1e-75
Q04637 1599 Eukaryotic translation in no N/A 0.863 0.277 0.358 2e-72
Q6NZJ6 1600 Eukaryotic translation in no N/A 0.842 0.270 0.344 2e-71
P41110 1402 Eukaryotic translation in no N/A 0.842 0.308 0.320 2e-52
G5CEW6 1488 Eukaryotic translation in N/A N/A 0.840 0.290 0.322 7e-47
B9FXV5 1792 Eukaryotic translation in no N/A 0.735 0.210 0.338 3e-46
Q84PB3 793 Eukaryotic translation in no N/A 0.507 0.329 0.376 5e-44
Q76E23 1727 Eukaryotic translation in yes N/A 0.733 0.218 0.337 6e-44
Q03387 788 Eukaryotic translation in N/A N/A 0.488 0.318 0.375 1e-42
>sp|O43432|IF4G3_HUMAN Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2 Back     alignment and function desciption
 Score =  285 bits (728), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 177/476 (37%), Positives = 265/476 (55%), Gaps = 45/476 (9%)

Query: 42   WSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDL-EIVLKDLSKPSYPNKNSNISHNI 100
            W P + EG K+Y R+FLL+ QF      KP  LP + ++VL  +++P  P +   +   I
Sbjct: 613  WKPTDTEGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRT--LDPRI 670

Query: 101  MPHGSRNNDILFPHYANKPGNMRQNIRQQQPVLKARSIQGGKVPKPAPK-SPNIVLSISL 159
            +P G              PG       +  P+L      G +  +P  +  P  ++++S+
Sbjct: 671  LPRGPDFTPAFADFGRQTPGG------RGVPLLNV----GSRRSQPGQRREPRKIITVSV 720

Query: 160  KDDIKLRESENAWRPNNNCD---------EDEKFYKQVRGVLNKLTPENFESMKMQFKEF 210
            K+D+ L+++ENAW+P+   D         + ++ +++VR +LNKLTP+ F  +  Q    
Sbjct: 721  KEDVHLKKAENAWKPSQKRDSQADDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGL 780

Query: 211  PINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPSVNFK 270
             ++T +RL  VIDLVF+KAI EPSFS  YA MC  ++  +V    KP N      +VNF+
Sbjct: 781  TVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGN------TVNFR 834

Query: 271  NLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCR 330
             LLLN+CQKEFEK++ ++   + K  E+EA   PE++  L    EE +   R+RS+GN +
Sbjct: 835  KLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIK 894

Query: 331  FIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYF 390
            FIGEL+KL MLT  IMH C+ +LLK  +EE LE  C+LL+TIGKDL+     P +M  YF
Sbjct: 895  FIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKP-RMDQYF 953

Query: 391  TTMEELASKKNSHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQYEAESEKFGN 450
              ME++  ++ +   SSR+RFMLQDVIDLR   W+ RR +  PKTI+QI  EA+ E+   
Sbjct: 954  NQMEKIVKERKT---SSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEE 1010

Query: 451  VNKKPLLDKPYSLEKPMLDNDRKSAFQQ-QQKDWNKPNNPIYKASYQFDKTKFVSI 505
              K         +++ M    R+   Q+  +  WN       K S   D +KF+ I
Sbjct: 1011 QRK---------VQQLMTKEKRRPGVQRVDEGGWNTVQG--AKNSRVLDPSKFLKI 1055
Probable component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Thought to be a functional homolog of EIF4G1.
Homo sapiens (taxid: 9606)
>sp|Q80XI3|IF4G3_MOUSE Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2 Back     alignment and function description
>sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=4 Back     alignment and function description
>sp|Q6NZJ6|IF4G1_MOUSE Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1 Back     alignment and function description
>sp|P41110|IF4G1_RABIT Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus GN=EIF4G1 PE=1 SV=1 Back     alignment and function description
>sp|G5CEW6|IF4G_WHEAT Eukaryotic translation initiation factor 4G OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|B9FXV5|IF4G_ORYSJ Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2 Back     alignment and function description
>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2 Back     alignment and function description
>sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2 Back     alignment and function description
>sp|Q03387|IF4G1_WHEAT Eukaryotic translation initiation factor isoform 4G-1 OS=Triticum aestivum PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
383862347 1917 PREDICTED: uncharacterized protein LOC10 0.832 0.223 0.469 1e-101
332021074 1038 Eukaryotic translation initiation factor 0.900 0.446 0.447 1e-99
350400037 1919 PREDICTED: hypothetical protein LOC10074 0.768 0.205 0.5 5e-99
343790874 1914 eukaryotic translation initiation factor 0.758 0.203 0.485 1e-98
340727946 1965 PREDICTED: hypothetical protein LOC10064 0.766 0.200 0.504 3e-97
268607518 1131 eukaryotic translation initiation factor 0.848 0.385 0.439 7e-96
242005415 1072 eukaryotic translation initiation factor 0.760 0.364 0.478 6e-93
307186281 1968 Eukaryotic translation initiation factor 0.861 0.225 0.456 2e-92
270007317 1627 hypothetical protein TcasGA2_TC013876 [T 0.754 0.238 0.438 3e-80
189237024 1312 PREDICTED: similar to eukaryotic transla 0.754 0.295 0.438 4e-80
>gi|383862347|ref|XP_003706645.1| PREDICTED: uncharacterized protein LOC100881617 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/469 (46%), Positives = 294/469 (62%), Gaps = 41/469 (8%)

Query: 38   FKY---QWSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEIVLKDLSKPSYPNKNS 94
            +KY   QWSPIN  G K Y R+FL+ LQ +  SK KP+NLPDL++VLKD SK       +
Sbjct: 955  YKYKDDQWSPINTTGKKVYDREFLMRLQNDPNSKIKPSNLPDLDVVLKDSSK-------A 1007

Query: 95   NISHNIMPHGSRN---NDILFPHYANK-PGNMRQNIRQQQPVLKARSIQGGKVPKPAPKS 150
             +  ++ P    N   +D++FP + NK P N+ +      P+      Q G+  KP    
Sbjct: 1008 RVGVDLRPFKDANMNRHDLMFPLFINKQPSNITR-----VPLANRNKSQPGRSSKPT--K 1060

Query: 151  PNIV-LSISLKDDIKLRESENAWRP----NNNCDEDEK----FYKQVRGVLNKLTPENFE 201
            PNI+ +S+SL++D+KLRE+ENAWRP      +  E+E      YK+VR VLNKLTP+ F 
Sbjct: 1061 PNIIHMSLSLREDVKLRETENAWRPTRLKGTSLSEEEAKTEALYKRVRSVLNKLTPQKFS 1120

Query: 202  SMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKD 261
            ++  Q +   I+T +RL  VI+LVF+KA+ EPSFS  YA MC E+   EV    K  N +
Sbjct: 1121 TLVDQVRALNIDTPERLQGVINLVFEKAVDEPSFSVAYALMCKELAMMEVSGGDK--NSE 1178

Query: 262  GKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLI 321
             +  S +FK L++ +CQ EFEKN   E     +L EI+   DPE+KK+L+L  EEEER I
Sbjct: 1179 RQEGSFSFKKLIITRCQNEFEKNPVNEVARAARLKEIDECTDPERKKDLQLALEEEERRI 1238

Query: 322  RKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDK 381
            R +SVGN RFIGELYK  MLTTKIM  CI ELL + +E+ LE  CKLL+TIGKDLE  +K
Sbjct: 1239 RIKSVGNIRFIGELYKQGMLTTKIMRRCIKELLNQNDEDSLECLCKLLTTIGKDLE--NK 1296

Query: 382  DPT-QMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQ 440
             P  +M+ YF  M+++ S++N   ISSR+RFMLQDVIDLR NKW+PRR+E+ PKTI QIQ
Sbjct: 1297 GPAEEMQDYFNKMQDIVSRRNQGKISSRIRFMLQDVIDLRANKWVPRRDESNPKTIDQIQ 1356

Query: 441  YEAESEKFGNVNKKPLLDKPYSLEKPMLDNDRK---SAFQQQQKDWNKP 486
             EAESE+  +      L+ P   E+    NDRK         +  W++P
Sbjct: 1357 REAESERLDSQLSNTPLNTPRKDER---TNDRKRNRGVGPTDESGWSQP 1402

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332021074|gb|EGI61461.1| Eukaryotic translation initiation factor 4 gamma 3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350400037|ref|XP_003485715.1| PREDICTED: hypothetical protein LOC100749391 [Bombus impatiens] Back     alignment and taxonomy information
>gi|343790874|ref|NP_001177977.2| eukaryotic translation initiation factor 4 gamma [Apis mellifera] Back     alignment and taxonomy information
>gi|340727946|ref|XP_003402294.1| PREDICTED: hypothetical protein LOC100645931 [Bombus terrestris] Back     alignment and taxonomy information
>gi|268607518|ref|NP_001161331.1| eukaryotic translation initiation factor 4 gamma [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242005415|ref|XP_002423564.1| eukaryotic translation initiation factor 4 gamma, putative [Pediculus humanus corporis] gi|212506693|gb|EEB10826.1| eukaryotic translation initiation factor 4 gamma, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307186281|gb|EFN71944.1| Eukaryotic translation initiation factor 4 gamma 3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|270007317|gb|EFA03765.1| hypothetical protein TcasGA2_TC013876 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189237024|ref|XP_968522.2| PREDICTED: similar to eukaryotic translation initiation factor 4 gamma, 3 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
ZFIN|ZDB-GENE-070112-702 1592 zgc:158450 "zgc:158450" [Danio 0.887 0.286 0.369 6.6e-65
UNIPROTKB|F5H8J4 1075 EIF4G3 "Eukaryotic translation 0.671 0.320 0.355 2.1e-61
UNIPROTKB|G3N2H3 1228 EIF4G3 "Uncharacterized protei 0.846 0.354 0.347 8.8e-61
UNIPROTKB|D4A554 1581 Eif4g3 "Protein Eif4g3" [Rattu 0.846 0.275 0.347 1e-60
RGD|1311370 1587 Eif4g3 "eukaryotic translation 0.846 0.274 0.347 1.1e-60
UNIPROTKB|F1MIK1 1317 EIF4G3 "Uncharacterized protei 0.846 0.330 0.347 1.1e-60
UNIPROTKB|F5H564 1189 EIF4G3 "Eukaryotic translation 0.846 0.365 0.345 1.6e-60
UNIPROTKB|E1BLC8 1614 EIF4G3 "Uncharacterized protei 0.846 0.269 0.347 1.8e-60
UNIPROTKB|Q504Z1 1305 EIF4G3 "Eukaryotic translation 0.846 0.333 0.345 2.2e-60
UNIPROTKB|F1N8G9 1681 EIF4G3 "Uncharacterized protei 0.840 0.256 0.341 2.5e-60
ZFIN|ZDB-GENE-070112-702 zgc:158450 "zgc:158450" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 664 (238.8 bits), Expect = 6.6e-65, Sum P(2) = 6.6e-65
 Identities = 186/503 (36%), Positives = 257/503 (51%)

Query:    36 HEFKY-QWSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEIVLKDLSKPSYPNKNS 94
             +++K  QW PIN E  K+Y R+FLL  QF + S  KP  LP +  V+ D +  + P +  
Sbjct:   580 YQYKEEQWKPINPEEKKRYDREFLLGFQFISASMHKPEGLPHISDVVLDKANKT-PLRPL 638

Query:    95 NISHNIMPHGSRNNDILFPHYANKPGNMRQNIRQQQPVLKARSIQGGKVPKPAPKSPNIV 154
             +   ++M  G    D   P YAN  G        + P   AR  Q G+      ++P I+
Sbjct:   639 D-PRSLMNCGP---DFT-PSYANL-GRQSSGGGGRGP--SARRPQPGRGKDQISRNPKII 690

Query:   155 LSISLKDDIKLRESENAWRPN------NNCDEDE---------KFYKQVRGVLNKLTPEN 199
              S+SLKD+I+L ++ENAW P+      +  +E+E         + +++VR VLNKLTP+ 
Sbjct:   691 TSVSLKDNIELNQAENAWTPSVKKQVRSRGEEEEDDAEAAKTQELFRRVRSVLNKLTPQM 750

Query:   200 FESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVN 259
             F+ +  Q  E  I+T +RL  VIDL+F+KAI+EP+FS  YA MC  +M  +V    KP  
Sbjct:   751 FQQLMKQVTELAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMGLKVPTSDKP-- 808

Query:   260 KDGKRPSVNFKNLLLNKCQXXXXXXXXXXXXXDIKLDEIEAEQDPXXXXXXXXXXXXXXX 319
               G   +VNF+ LLLN+CQ             + K  E++A  +                
Sbjct:   809 --GV--TVNFRKLLLNRCQKEFEKDKDDDEIFEQKQKELDAATEEEERQRLNDELQDAKD 864

Query:   320 XXXKRSVGNCRFIGELYKLNMLTTKIMHHCISXXXXXXXXXXXXRACKLLSTIGKDLESH 379
                KRS+GN +FIGEL+KL MLT  IMH CI               C+LLSTIGKDL+  
Sbjct:   865 KARKRSLGNIKFIGELFKLKMLTEPIMHDCIVKLLKNHDEDSLECLCRLLSTIGKDLDFE 924

Query:   380 DKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQI 439
                P +M  YF  ME++  +K +   SSR+RFMLQDV+DLRKN W+PRR +  PKTI QI
Sbjct:   925 KAKP-RMDQYFHQMEKIIKEKKT---SSRIRFMLQDVLDLRKNNWVPRRGDQGPKTIDQI 980

Query:   440 QYEAESEKFGNVNK--KPLLDKPYSLEK------PMLDNDRKSAFQQQQKDWNKPNNPIY 491
               EAE E+     K  + LL K  S +       P     R S  Q Q + WN    PI 
Sbjct:   981 HKEAELEEHREQIKVQQQLLSKKDSSQGRGGRGGPHSSGGRGS--QTQDEGWNIV--PIT 1036

Query:   492 KASYQFDKTKFVSIRVSNAFKNR 514
               S   D ++   I     F N+
Sbjct:  1037 TKSRPIDTSRLSKITKPGDFNNQ 1059
GO:0016070 "RNA metabolic process" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|F5H8J4 EIF4G3 "Eukaryotic translation initiation factor 4 gamma 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3N2H3 EIF4G3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D4A554 Eif4g3 "Protein Eif4g3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1311370 Eif4g3 "eukaryotic translation initiation factor 4 gamma, 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MIK1 EIF4G3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F5H564 EIF4G3 "Eukaryotic translation initiation factor 4 gamma 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BLC8 EIF4G3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q504Z1 EIF4G3 "Eukaryotic translation initiation factor 4 gamma 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8G9 EIF4G3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
smart00543200 smart00543, MIF4G, Middle domain of eukaryotic ini 7e-36
pfam02854198 pfam02854, MIF4G, MIF4G domain 1e-35
>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information 
 Score =  132 bits (333), Expect = 7e-36
 Identities = 75/245 (30%), Positives = 120/245 (48%), Gaps = 53/245 (21%)

Query: 186 KQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYE 245
           K+V+G++NKL+P NFES+  +  +   +       +++L+F+KA+ EP+F   YA++C  
Sbjct: 2   KKVKGLINKLSPSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCAL 61

Query: 246 MMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPE 305
           +  +                  +F +LLL + Q+EFEK                      
Sbjct: 62  LNAKN----------------PDFGSLLLERLQEEFEKGL-------------------- 85

Query: 306 KKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKK-TEEEPLER 364
                    E EE   ++R +G  RF+GELY   +LT+KI+   + ELL   T+ +P   
Sbjct: 86  ---------ESEEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRS 136

Query: 365 ------ACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVID 418
                    LL T GKDLE  +K P  +      +++   KK+   +SSR+RFML+ +I+
Sbjct: 137 DFSVECLLSLLPTCGKDLE-REKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIE 195

Query: 419 LRKNK 423
           LRKNK
Sbjct: 196 LRKNK 200

Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press). Length = 200
>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 514
KOG0401|consensus 970 100.0
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 100.0
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 99.96
KOG2141|consensus 822 99.7
KOG2140|consensus 739 99.66
KOG3942|consensus348 99.01
KOG2051|consensus 1128 98.52
KOG0401|consensus970 98.47
KOG2051|consensus 1128 97.83
PF05456116 eIF_4EBP: Eukaryotic translation initiation factor 95.97
PF1215275 eIF_4G1: Eukaryotic translation initiation factor 95.88
KOG1104|consensus 759 91.81
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 85.46
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 84.92
>KOG0401|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-46  Score=431.46  Aligned_cols=426  Identities=32%  Similarity=0.466  Sum_probs=300.6

Q ss_pred             ccccccCCCCCCCCccccccHHHHhhccCccCCCCCCCCCCchHH-HhhcCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Q psy10998         35 YHEFKYQWSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEI-VLKDLSKPSYPNKNSNISHNIMPHGSRNNDILFP  113 (514)
Q Consensus        35 ~~~~~~qw~p~n~~gKk~Ydr~fLl~lq~~~~~~~kP~~lP~~~~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  113 (514)
                      +.+..+.|.|..+++++.|++.+.+.++|...|+.++++.+.+.+ ++........+.+....+. +      .+...+|
T Consensus       187 ~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~d~~~~~~e~~~~~~~~e~~~~-~------~~~~~~~  259 (970)
T KOG0401|consen  187 SEDGIPFEKPPDPEEQKASDRMDALTLAFSEELLLEAENTPRSSDEYVRRIEAEQEPLRPEEPSG-L------RAIQKIP  259 (970)
T ss_pred             ccccCCCCCCCCcccccccccchhhhhhhhhhhhhhhhhcCCcchHHHHHHHHHhhccCCccchh-h------hcccccc
Confidence            577889999999999999999999999999999999998888643 3322221101111111111 0      1222233


Q ss_pred             CCCCCCCCCccccc-------ccCccc-----ccccCCCCCCCCCCCCCCC-cccccccccCccccccCCcccCCCC---
Q psy10998        114 HYANKPGNMRQNIR-------QQQPVL-----KARSIQGGKVPKPAPKSPN-IVLSISLKDDIKLRESENAWRPNNN---  177 (514)
Q Consensus       114 ~f~~~~~~~~~~~r-------g~~p~~-----~~r~~~~g~~~~~~~~~p~-i~~~~~~~~dvkL~~senaW~P~~~---  177 (514)
                      .++... .....++       +..|..     ..|.++++...     +|. +.  ..-..+|.+.....+|.|...   
T Consensus       260 ~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----e~~~~~--~~~~~~~~~~~~~~~~~ps~k~a~  331 (970)
T KOG0401|consen  260 EKATER-RAEESGRDKPEHEDQTKPAGNRLLDEPRESQPAENG-----EPAKKG--VEEVEEVVLNFAQKAPSPSPKRAK  331 (970)
T ss_pred             cccccc-cccccccccccccccccccccccccchhhhcccccc-----cccccc--chhhhHHHHHhccCCCCCcchhhc
Confidence            333211 1000011       111210     01112211111     111 11  122344556666666666552   


Q ss_pred             -----C------ChhHHHHHHHHHHhhcCCccchHHHHHHhhccccCcHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q psy10998        178 -----C------DEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEM  246 (514)
Q Consensus       178 -----~------de~e~l~rkVr~iLNKLTp~nFd~l~~qll~l~I~t~e~L~~VI~lIFeKAi~Ep~fs~~YA~LC~~L  246 (514)
                           .      ...+++.+.|++|||+|||.+|+.++.+++.+.|++.+.|++||.+||||||.||+||.|||+||..|
T Consensus       332 ~~~~~~~~~~~~~~~~el~~~vrsilnkltp~~~~~l~~q~~~~~i~t~~~l~~vi~~vfdkAi~EP~f~~~yA~lc~~l  411 (970)
T KOG0401|consen  332 SKSDQGAERKDVELKEELAKRVRSLLNKLTPERKELLIEQLIELNVDTDDALKEVIELVFDKAINEPTFCAMYARLCFDL  411 (970)
T ss_pred             cccccccccchhHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhhccCcHHHHhHHHHHHHHhhhcccccchhcchhcccc
Confidence                 1      12389999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccCCCCCCCCCCCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhh
Q psy10998        247 MKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSV  326 (514)
Q Consensus       247 ~~~ev~~e~~~v~~d~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~l  326 (514)
                      .. . ...   ...+......+||++||++||++|+....      ...+++.....++.   +..++++++...++|.+
T Consensus       412 ~~-~-~~~---~~~~~~~~~~~fr~~lL~rcq~~fe~~~~------~~~~~~~~~~~~~~---~e~~le~~k~~~~~rtl  477 (970)
T KOG0401|consen  412 EG-P-PSE---PELDMGGDEINFRRLLLNRCQKEFEGEDD------KIADEYSEAEEPDE---LEEELEEEKYILRRRTL  477 (970)
T ss_pred             cC-C-ccC---CCcCCCCCcccHHHHHHHHhHHHhhcccH------HHHHHhhhhcCchh---HHHHHHhccceecCCcc
Confidence            87 2 111   01344456789999999999999997541      11233333333332   34566777778899999


Q ss_pred             hHHHHHHHHhhcccCcHHHHHHHHHHhhcC--CCChhHHHHHHHHHHHhhhhhcCCCCchh-HHHHHHHHHHHHhhhcCC
Q psy10998        327 GNCRFIGELYKLNMLTTKIMHHCISELLKK--TEEEPLERACKLLSTIGKDLESHDKDPTQ-MKGYFTTMEELASKKNSH  403 (514)
Q Consensus       327 GnirFIGELfk~~mLt~~Im~~cI~~LL~~--~dEeslEcLc~LL~tiGk~Ld~~~k~~~~-md~~F~~L~~i~~~k~~~  403 (514)
                      |||+|||+||+..|++++|||.||..||..  ++|+++||+|+|++|||+.||... .... |+.||.+++.+...   .
T Consensus       478 gn~~~ig~l~~~~ml~e~i~~~~v~~Ll~~~~~~ee~ie~lc~f~~tig~~lD~~~-~s~r~md~~~~~~k~~~~~---~  553 (970)
T KOG0401|consen  478 GNFRFIGELFKLKMLTEKIVHACVQKLLSDDQPSEESIECLCRFLTTIGKKLDFSK-ESPRNMDEYFNSMKNLKRK---P  553 (970)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHhhhhcccccccccC-cccchhHHHHHHHHHhhhh---h
Confidence            999999999999999999999999999998  899999999999999999999884 4455 99999999998875   5


Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHHHHhHhccccCCCCCCCCCCCCCcCCCCccccccc-CCCC
Q psy10998        404 AISSRVRFMLQDVIDLRKNKWIPRRNENKPK-TIQQIQYEAESEKFGNVNKKPLLDKPYSLEKPMLDNDRKSAFQ-QQQK  481 (514)
Q Consensus       404 ~lssRIRFMIqdliDLR~nnW~~r~~~~~Pk-TI~qI~keae~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  481 (514)
                      .+++|+|||+++++|||.++|++|+.+.++. +|++||.++..+..    ..+....++         ..++.+. ....
T Consensus       554 ~~s~r~RfM~~~~idlR~~~w~~rr~~~~~~~~ieei~~~~~~~~~----~~p~~~~~~---------~~~~~~~~~~~~  620 (970)
T KOG0401|consen  554 QRSNRIRFMLQSVIDLRKSGWGPRRAEETNDKPIEEIAPEAPSANR----WSPKSLSKK---------TEGRLAEESDSG  620 (970)
T ss_pred             hhccchhhhhccccccccccccchhcccCCCCchhhcchhhhhhcc----cCccccccc---------cccccccccccc
Confidence            8999999999999999999999999988766 99999999987533    111111111         1111112 2344


Q ss_pred             CCccCC--CCCCCCCcccCcccceeEE
Q psy10998        482 DWNKPN--NPIYKASYQFDKTKFVSIR  506 (514)
Q Consensus       482 ~w~~~~--~~~~~~~~~~~~~~~~~~~  506 (514)
                      +|...+  +.+..+.+.+++++|.+|+
T Consensus       621 ~~~~~~~~~~~~~~~~~~~~e~~~~i~  647 (970)
T KOG0401|consen  621 LLGKEVVERKGKSGLRKLTPEMFDKIS  647 (970)
T ss_pred             ccCccccccccccccccCChhhccccc
Confidence            588643  4556788899999998884

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>KOG2141|consensus Back     alignment and domain information
>KOG2140|consensus Back     alignment and domain information
>KOG3942|consensus Back     alignment and domain information
>KOG2051|consensus Back     alignment and domain information
>KOG0401|consensus Back     alignment and domain information
>KOG2051|consensus Back     alignment and domain information
>PF05456 eIF_4EBP: Eukaryotic translation initiation factor 4E binding protein (EIF4EBP); InterPro: IPR008606 This family consists of several eukaryotic translation initiation factor 4E binding proteins (EIF4EBP1, -2 and -3) Back     alignment and domain information
>PF12152 eIF_4G1: Eukaryotic translation initiation factor 4G1; InterPro: IPR022745 The eukaryotic initiation factor 4G (eIF4G) is the core of a multicomponent switch controlling gene expression at the level of translation initiation Back     alignment and domain information
>KOG1104|consensus Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
1hu3_A260 Middle Domain Of Human Eif4gii Length = 260 1e-44
2vso_E284 Crystal Structure Of A Translation Initiation Compl 3e-11
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/262 (38%), Positives = 139/262 (53%), Gaps = 10/262 (3%)
Query: 182 EKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAK 241
           ++ +++VR +LNKLTP+ F  +  Q     ++T +RL  VIDLVF+KAI EPSFS  YA 
Sbjct: 9   QELFRKVRSILNKLTPQXFNQLXKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYAN 68
Query: 242 MCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQXXXXXXXXXXXXXDIKLDEIEAE 301
            C  ++  +V    KP N      +VNF+ LLLN+CQ             + K  E+EA 
Sbjct: 69  XCRCLVTLKVPXADKPGN------TVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAA 122
Query: 302 QDPXXXXXXXXXXXXXXXXXXKRSVGNCRFIGELYKLNMLTTKIMHHCISXXXXXXXXXX 361
             P                  +RS+GN +FIGEL+KL  LT  I H C+           
Sbjct: 123 SAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLLKNHDEES 182
Query: 362 XXRACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRK 421
               C+LL+TIGKDL+     P +   YF   E++  ++ +   SSR+RF LQDVIDLR 
Sbjct: 183 LECLCRLLTTIGKDLDFEKAKP-RXDQYFNQXEKIVKERKT---SSRIRFXLQDVIDLRL 238
Query: 422 NKWIPRRNENKPKTIQQIQYEA 443
             W+ RR +  PKTI+QI  EA
Sbjct: 239 CNWVSRRADQGPKTIEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 5e-72
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 9e-57
3rk6_A234 Polyadenylate-binding protein-interacting protein; 9e-44
2i2o_A224 EIF4G-like protein; protein structure initiative, 6e-43
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260 Back     alignment and structure
 Score =  228 bits (583), Expect = 5e-72
 Identities = 124/265 (46%), Positives = 171/265 (64%), Gaps = 10/265 (3%)

Query: 179 DEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEF 238
            + ++ +++VR +LNKLTP+ F  +  Q     ++T +RL  VIDLVF+KAI EPSFS  
Sbjct: 6   IKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVA 65

Query: 239 YAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEI 298
           YA MC  ++  +V    KP N       VNF+ LLLN+CQKEFEK++ ++   + K  E+
Sbjct: 66  YANMCRCLVTLKVPMADKPGNT------VNFRKLLLNRCQKEFEKDKADDDVFEKKQKEL 119

Query: 299 EAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTE 358
           EA   PE++  L    EE +   R+RS+GN +FIGEL+KL MLT  IMH C+ +LLK  +
Sbjct: 120 EAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD 179

Query: 359 EEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVID 418
           EE LE  C+LL+TIGKDL+  +K   +M  YF  ME++  ++     SSR+RFMLQDVID
Sbjct: 180 EESLECLCRLLTTIGKDLD-FEKAKPRMDQYFNQMEKIVKERK---TSSRIRFMLQDVID 235

Query: 419 LRKNKWIPRRNENKPKTIQQIQYEA 443
           LR   W+ RR +  PKTI+QI  EA
Sbjct: 236 LRLCNWVSRRADQGPKTIEQIHKEA 260
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284 Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234 Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Length = 224 Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Length = 248 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 100.0
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 100.0
3rk6_A234 Polyadenylate-binding protein-interacting protein; 100.0
2i2o_A224 EIF4G-like protein; protein structure initiative, 100.0
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 99.67
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 98.74
4b89_A249 General negative regulator of transcription subun; 95.62
4gmj_A229 CCR4-NOT transcription complex subunit 1; mRNA dec 95.14
1rf8_B100 Eukaryotic initiation factor 4F subunit P150; prot 94.81
3hxi_C21 Eukaryotic translation initiation factor 4E- bindi 94.39
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
Probab=100.00  E-value=1.1e-61  Score=484.17  Aligned_cols=252  Identities=48%  Similarity=0.802  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHhhcCCccchHHHHHHhhccccCcHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhccccCCCCCCCCC
Q psy10998        182 EKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKD  261 (514)
Q Consensus       182 e~l~rkVr~iLNKLTp~nFd~l~~qll~l~I~t~e~L~~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~ev~~e~~~v~~d  261 (514)
                      +.+.|+|+++||||||+||+.|+.+|+++++.+.+.|++||++||+||++||+|+.|||+||..|....++.      .+
T Consensus         9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~------~~   82 (260)
T 1hu3_A            9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPM------AD   82 (260)
T ss_dssp             HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC---------
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCc------cc
Confidence            899999999999999999999999999999999999999999999999999999999999999998755554      23


Q ss_pred             CCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHhhcccC
Q psy10998        262 GKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNML  341 (514)
Q Consensus       262 ~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~lGnirFIGELfk~~mL  341 (514)
                      +++.+..||++||++||++|++.+.+....+++.++++.+.++++++.+..++++...+.|+|++|+|+||||||+++||
T Consensus        83 ~~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l  162 (260)
T 1hu3_A           83 KPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKML  162 (260)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCS
T ss_pred             CCccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCC
Confidence            34467889999999999999998765444444556676666777777776666665567889999999999999999999


Q ss_pred             cHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHh
Q psy10998        342 TTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRK  421 (514)
Q Consensus       342 t~~Im~~cI~~LL~~~dEeslEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~~~~lssRIRFMIqdliDLR~  421 (514)
                      +++|||+||..||.+++|++|||+|.||+|||+.|+.+ .++..|+.||.+|+.++.+   .++|+|+||||+||+|||+
T Consensus       163 ~~~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~~-~~~~~l~~~f~~l~~~~~~---~~ls~Rirfmi~~l~dLR~  238 (260)
T 1hu3_A          163 TEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFE-KAKPRMDQYFNQMEKIVKE---RKTSSRIRFMLQDVIDLRL  238 (260)
T ss_dssp             CHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCCT-TTHHHHHHHHHHHHHHHHS---CSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999985 4678999999999999864   4899999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHH
Q psy10998        422 NKWIPRRNENKPKTIQQIQYEA  443 (514)
Q Consensus       422 nnW~~r~~~~~PkTI~qI~kea  443 (514)
                      |||++++.+.+||||+|||+||
T Consensus       239 ~~W~~~~~~~~pkti~~i~~ea  260 (260)
T 1hu3_A          239 CNWVSRRADQGPKTIEQIHKEA  260 (260)
T ss_dssp             TTTCC-----------------
T ss_pred             cCCCCCccccCCCcHHHHHhhC
Confidence            9999999999999999999997
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B Back     alignment and structure
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A Back     alignment and structure
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis, translation regulat biosynthetic protein, translation; HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP: a.210.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 514
d1hu3a_243 a.118.1.14 (A:) Eukaryotic initiation factor eIF4G 7e-58
d1uw4b_248 a.118.1.14 (B:) Regulator of nonsense transcripts 7e-35
d1h2vc1262 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin 9e-06
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  190 bits (483), Expect = 7e-58
 Identities = 110/246 (44%), Positives = 155/246 (63%), Gaps = 10/246 (4%)

Query: 180 EDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFY 239
           + ++ +++VR +LNKLTP+ F  +  Q     ++T +RL  VIDLVF+KAI EPSFS  Y
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAY 66

Query: 240 AKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIE 299
           A MC  ++  +          D    +VNF+ LLLN+CQKEFEK++ ++   + K  E+E
Sbjct: 67  ANMCRCLVTLK------VPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELE 120

Query: 300 AEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEE 359
           A   PE++  L    EE +   R+RS+GN +FIGEL+KL MLT  IMH C+ +LLK  +E
Sbjct: 121 AASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE 180

Query: 360 EPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDL 419
           E LE  C+LL+TIGKDL+       +M  YF  ME++  ++     SSR+RFMLQDVIDL
Sbjct: 181 ESLECLCRLLTTIGKDLDFEKA-KPRMDQYFNQMEKIVKERK---TSSRIRFMLQDVIDL 236

Query: 420 RKNKWI 425
           R   W+
Sbjct: 237 RLCNWV 242
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 100.0
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 100.0
d1h2vc1262 CBP80, 80KDa nuclear cap-binding protein {Human (H 99.31
d1rf8b_100 Eukaryotic initiation factor 4f subunit eIF4g, eIF 92.92
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-48  Score=378.14  Aligned_cols=235  Identities=48%  Similarity=0.800  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHhhcCCccchHHHHHHhhccccCcHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhccccCCCCCCCCC
Q psy10998        182 EKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKD  261 (514)
Q Consensus       182 e~l~rkVr~iLNKLTp~nFd~l~~qll~l~I~t~e~L~~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~ev~~e~~~v~~d  261 (514)
                      +++.|+|+++|||||++||+.|+++|+++++++.+.++.+|+.||+||+.||+|+.+||+||..|.......      .+
T Consensus         9 ~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~------~~   82 (243)
T d1hu3a_           9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPM------AD   82 (243)
T ss_dssp             HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC---------
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHhcCcc------cc
Confidence            899999999999999999999999999999999999999999999999999999999999999998754322      22


Q ss_pred             CCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHhhcccC
Q psy10998        262 GKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNML  341 (514)
Q Consensus       262 ~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~lGnirFIGELfk~~mL  341 (514)
                      ..+.+..||..||++||++|++...+......+..+.....+++....+..+.++...+.|+|.+|+++||||||+++++
T Consensus        83 ~~~~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v  162 (243)
T d1hu3a_          83 KPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKML  162 (243)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCS
T ss_pred             ccccchHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccc
Confidence            33456789999999999999987643222222222222222233222222222222334678899999999999999999


Q ss_pred             cHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHh
Q psy10998        342 TTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRK  421 (514)
Q Consensus       342 t~~Im~~cI~~LL~~~dEeslEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~~~~lssRIRFMIqdliDLR~  421 (514)
                      +.++|++|+..|+.+++|++|||||.||++||+.|+.+ ..+..|+.||.+|+.+..+   .++|+||||||+||+|||+
T Consensus       163 ~~~~i~~~l~~Ll~~~~e~~ie~l~~lL~~~G~~L~~~-~~~~~~~~~~~~l~~~~~~---~~~s~Rirfml~~l~elR~  238 (243)
T d1hu3a_         163 TEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFE-KAKPRMDQYFNQMEKIVKE---RKTSSRIRFMLQDVIDLRL  238 (243)
T ss_dssp             CHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCCT-TTHHHHHHHHHHHHHHHHS---CSSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999876 4568899999999999874   4899999999999999999


Q ss_pred             CCCCC
Q psy10998        422 NKWIP  426 (514)
Q Consensus       422 nnW~~  426 (514)
                      +||++
T Consensus       239 ~~W~s  243 (243)
T d1hu3a_         239 CNWVS  243 (243)
T ss_dssp             TTTCC
T ss_pred             cCCCC
Confidence            99985
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rf8b_ a.210.1.1 (B:) Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure