Psyllid ID: psy11062

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTHSTLKSELNSPLGSNSFQLSILWYSIFLRTNTMQIYRQFWYLSQVIP
Secondary Structure (PSIPRED)
cEEEEccccccEEEEEEEccccccEEEEcccEEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEEEEEccccccEEEEEEEEEEEccccccccEEEEEEEEEcccccccEEEEEEccccccccccEEEEccEEEEEEcccccccccccEEEEEEEEEcccccccEEEEEEEEEEEEcccccccccccEEEEEEcccccccEEEEEEccccccccccEEEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEccccccEEEEEccccEEEEEcccccccccEEEEEEEEEccccccccEEEEEEEEEEccccccccccccEEEEEccccccccEEEEEEEEccccccccEEEEEEEccccccccEEEEEccccEEEEEcccccccccEEEEEEEEEcccccccccEEEEEEEEEEccccccccccccEEEEEEcccccccEEEEEEEEccccccccccccEEEEEEEEccccccEEEEEEEccccEEEEEEccccHHccccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mkillldqsnpirytihsgdpegyftldstTGVIRTAATLDHEVTGVLLLSVqassgspplysyaQVKVTIedrndnapefesttirlsvpesaalglplYTVVArdkdsgdngkiryhlasgnfgdsrlfavdqtsghlslskhldyetsqrHTIVVsatdqgdppmssnlTVLLEvqdvndnppvferseYFVSVsealpaksqvrttctplyVLVEGQCSLVCWSTLRLMTHSTlkselnsplgsnsfqLSILWYSIFLRTNTMQIYRQFWYLSQVIP
Flexible Loop (DISEMBL)
MKILLLDQSNPIrytihsgdpegyFTLDSTTGVIRTAATLDHEVTGVLLLSvqassgspplYSYAQVKVTIEDRNDNAPEFESTTirlsvpesaalgLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVsatdqgdppMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSealpaksqvrtTCTPLYVLVEGQCSLVCWSTLRLMTHSTLKSelnsplgsnsFQLSILWYSIFLRTNTMQIYRQFWYLSQVIP
Low Complexity Region (SEG)
MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTHSTLKSELNSPLGSNSFQLSILWYSIFLRTNTMQIYRQFWYLSQVIP
Disordered region (IsUnstruct)
****LL**SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG*PPLYSYAQVKVTIE************TIRLSVPESAALGLPLYTVVARDKD*GDNGKIRYHLASGNFGDSRLFAVDQTSGHLSL**HLDY*******IV**************LTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTHSTLKSELNSPLGSNSFQLSILWYSIFLRTNTMQIYRQFWYLSQV**
Disordered Region (DISOPRED)
MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTHSTL*******LGSNSFQLSILWYSIFLRTNTMQIYRQFWYLSQVIP
Disordered Region (DISEMBL)
MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTHSTLKSELNSPLGSNSFQLSILWYSIFLRTNTMQIYRQFWYLSQVIP
Disordered Region (DISPRO)
*****LDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTHSTLKSELNSPLGSNSFQLSILWYSIFLRTNTMQIYRQFWYL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTHSTLKSELNSPLGSNSFQLSILWYSIFLRTNTMQIYRQFWYLSQVIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q24292	3503	Protein dachsous OS=Droso	yes	N/A	0.693	0.055	0.558	4e-62
Q8BNA6	4555	Protocadherin Fat 3 OS=Mu	yes	N/A	0.711	0.043	0.372	6e-30
Q9VW71	4705	Fat-like cadherin-related	no	N/A	0.658	0.039	0.389	6e-30
Q6V0I7	4981	Protocadherin Fat 4 OS=Ho	yes	N/A	0.690	0.038	0.370	7e-30
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	no	N/A	0.690	0.038	0.380	7e-30
Q14517	4588	Protocadherin Fat 1 OS=Ho	no	N/A	0.672	0.041	0.395	8e-29
Q8R508	4555	Protocadherin Fat 3 OS=Ra	no	N/A	0.711	0.043	0.362	1e-28
Q96JQ0	3298	Protocadherin-16 OS=Homo	no	N/A	0.690	0.058	0.365	5e-28
Q6V1P9	2916	Protocadherin-23 OS=Homo	no	N/A	0.733	0.070	0.379	6e-27
Q5F226	4351	Protocadherin Fat 2 OS=Mu	no	N/A	0.633	0.040	0.349	1e-26

>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3

 Score =  238 bits (607), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 151/197 (76%), Gaps = 2/197 (1%)

Query: 11   PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVT 70
            P+RY+I+SGDP+GYF++++ +G IR A  LDHE    +LL++QA+ G PP+Y + QV + 
Sbjct: 808  PVRYSIYSGDPDGYFSIETNSGNIRIAKPLDHEAKSQVLLNIQATLGEPPVYGHTQVNIE 867

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
            +ED NDNAPEFE++ +R+SVPESA LG PLY   A DKDSG +G++ Y L   +     L
Sbjct: 868  VEDVNDNAPEFEASMVRISVPESAELGAPLYAAHAHDKDSGSSGQVTYSLVKES--GKGL 925

Query: 131  FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
            FA+D  SGHL LS+HLDYE+SQRHT++V+ATD G P +S+NLT+L++VQDVNDNPPVFE+
Sbjct: 926  FAIDARSGHLILSQHLDYESSQRHTLIVTATDGGVPSLSTNLTILVDVQDVNDNPPVFEK 985

Query: 191  SEYFVSVSEALPAKSQV 207
             EY V+VSE+    +Q+
Sbjct: 986  DEYSVNVSESRSINAQI 1002

Involved in morphogenesis. May also be involved in cell adhesion.
Drosophila melanogaster (taxid: 7227)

>sp|Q8BNA6|FAT3_MOUSE Protocadherin Fat 3 OS=Mus musculus GN=Fat3 PE=1 SV=2

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 117/204 (57%), Gaps = 4/204 (1%)

Query: 3    ILLLDQSNP----IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS 58
            IL ++ ++P    I Y I  GDP   F +D  TGV++  + LD+EVT V  L+V+AS   
Sbjct: 2204 ILSINATSPEGQGIIYLIIDGDPFQQFNIDFDTGVLKVISPLDYEVTSVYKLTVRASDAL 2263

Query: 59   PPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRY 118
                +   V + ++D NDN P F+  T   ++ ES+ +G P+  +V+ D DSG+N  +RY
Sbjct: 2264 TGARAEVTVDLLVDDINDNPPVFDQPTYNTTLSESSLIGTPVLQLVSTDADSGNNKLVRY 2323

Query: 119  HLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEV 178
             +    +  +  F +D +SG +  ++ LD+E  Q  T+ V+ATD G P +SS + V + +
Sbjct: 2324 QIVQDTYNSTDYFHIDSSSGLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYI 2383

Query: 179  QDVNDNPPVFERSEYFVSVSEALP 202
             DVNDNPPVF +  Y   VSE  P
Sbjct: 2384 SDVNDNPPVFNQLIYESYVSELAP 2407

May play a role in the interactions between neurites derived from specific subsets of neurons during development.

Mus musculus (taxid: 10090)

>sp|Q9VW71|FAT2_DROME Fat-like cadherin-related tumor suppressor homolog OS=Drosophila melanogaster GN=kug PE=2 SV=2

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 5/190 (2%)

Query: 12   IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPLYSYAQVKVT 70
            I Y I SG+ +G F +DSTTG +   ATLD+E++    L++QA   G+PPL + A V ++
Sbjct: 3324 IHYFIMSGNEQGKFKMDSTTGDLVLNATLDYEMSKFYFLTIQAIDGGTPPLSNNAYVNIS 3383

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASG-NFGDSR 129
            I D NDN+P F     R++V E   +G  +  V A D+DS  NG + Y++  G N G   
Sbjct: 3384 ILDINDNSPTFLQNLYRINVNEDIFVGSKILDVKATDEDSDVNGLVTYNIERGDNIGQ-- 3441

Query: 130  LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFE 189
             F++D  +G +S+S+ LD ET   +T+ + A DQGDP   +++ + + + D NDN P+F 
Sbjct: 3442 -FSIDPKNGTISVSRPLDRETISHYTLEIQACDQGDPQRCNSVPININILDTNDNAPIFS 3500

Query: 190  RSEYFVSVSE 199
             S Y V + E
Sbjct: 3501 SSNYSVVLQE 3510

Required for the planar polarity of actin filament orientation at the basal side of ovarian follicle cells. Required for proper egg chamber shape; elongation of the egg chamber during oogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 112/197 (56%), Gaps = 3/197 (1%)

Query: 12   IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPLYSYAQVKVT 70
            I Y+I  G+ E  F +DST+G +     LD+E T    L +QA  SG+ PL S   + + 
Sbjct: 1245 IHYSIIKGNEERQFAIDSTSGQVTLIGKLDYEATPAYSLVIQAVDSGTIPLNSTCTLNID 1304

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
            I D NDN P F  +T+ + V E+  +G  + +V A D DSGDN  + Y +   N  +   
Sbjct: 1305 ILDENDNTPSFPKSTLFVDVLENMRIGELVSSVTATDSDSGDNADLYYSITGTN--NHGT 1362

Query: 131  FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
            F++   +G + L+K LD+ET   + + ++A DQG PP SS ++V++ V+D NDNPP F  
Sbjct: 1363 FSISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPP 1422

Query: 191  SEYFVSVSEALPAKSQV 207
             + F S+ E +P  + V
Sbjct: 1423 GDIFKSIVENIPIGTSV 1439

May function in the regulation of planar cell polarity (By similarity). Cadherins are cell-cell interaction molecules.

Homo sapiens (taxid: 9606)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 12   IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
            + Y +  G+  G F LD+ TG I  A++L  ++    L+ V A   G+PPL S A V +T
Sbjct: 3021 VEYFVSDGNHLGKFKLDNDTGWISIASSLVSDLNQNFLIRVTAKDKGNPPLSSQAVVHIT 3080

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
            + + N + PEF    I  ++PES ++G  + TV ARD+D+  NG I Y++ SGN  +  +
Sbjct: 3081 VTEENYHTPEFSQNHISATIPESHSIGSVVRTVSARDRDTAMNGLISYNIISGN--EEGI 3138

Query: 131  FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
            FA++ ++G ++L+K LDYE S +H + +SATD G    +   ++ + V DVNDN PVF  
Sbjct: 3139 FAINSSTGVVTLAKALDYEMSSKHEMTISATDGGWVARTGYCSLTVSVIDVNDNSPVFVP 3198

Query: 191  SEYFVSVSEALPAKSQV 207
             E+F +V E  P+ + V
Sbjct: 3199 DEFFPTVMENAPSGTTV 3215

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2

 Score =  127 bits (319), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 12   IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
            I Y+I SG+  G F++DS TG +     LD+E +    L+V+A+  G+P L   A V V 
Sbjct: 3265 ITYSIISGNEHGKFSIDSKTGAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVN 3324

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
            + D NDN P F   T    + E A L   + TV+A D D   N  I Y +  GN G S  
Sbjct: 3325 VTDINDNTPVFSQDTYTTVISEDAVLEQSVITVMADDADGPSNSHIHYSIIDGNQGSS-- 3382

Query: 131  FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
            F +D   G + ++K LD ET   +T+ V A+D G PP  +  TV ++V DVNDN PVF R
Sbjct: 3383 FTIDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSR 3442

Query: 191  SEYFVSVSEALP 202
              Y V + E  P
Sbjct: 3443 GNYSVIIQENKP 3454

Plays an essential role for cellular polarization, directed cell migration and modulating cell-cell contact.

Homo sapiens (taxid: 9606)

>sp|Q8R508|FAT3_RAT Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 115/204 (56%), Gaps = 4/204 (1%)

Query: 3    ILLLDQSNP----IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS 58
            IL ++ ++P    I Y I  GDP   F +D  TGV++  + LD+EV  V  L+V+AS   
Sbjct: 2204 ILSINATSPEGQGIIYLIIDGDPFQQFNIDFDTGVLKVISPLDYEVMSVYKLTVRASDAL 2263

Query: 59   PPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRY 118
                +   V + ++D NDN P F+  T   ++ ES+ +G P+  +V+ D DSG+N  + Y
Sbjct: 2264 TGARAEVTVDLLVDDVNDNPPVFDQPTYNTTLSESSLIGTPVLQLVSTDADSGNNNLVHY 2323

Query: 119  HLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEV 178
             +    +  +  F +D +SG +  ++ LD+E  Q  T+ V+ATD G P +SS + V + +
Sbjct: 2324 QIVQDTYNSTDYFHIDSSSGLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYI 2383

Query: 179  QDVNDNPPVFERSEYFVSVSEALP 202
             DVNDNPPVF +  Y   VSE  P
Sbjct: 2384 SDVNDNPPVFNQLIYESYVSELAP 2407

May play a role in the interactions between neurites derived from specific subsets of neurons during development.

Rattus norvegicus (taxid: 10116)

>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2 SV=1

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 112/200 (56%), Gaps = 6/200 (3%)

Query: 11   PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTG-VLLLSVQASSGSPPLYSYAQVKV 69
            P+  ++  GDP G F+LD+ +G+++T   LD E+ G VL L V+A SG PP ++ A+V+V
Sbjct: 823  PVTLSLSGGDPRGLFSLDAVSGLLQTLRPLDRELLGPVLELEVRAGSGVPPAFAVARVRV 882

Query: 70   TIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR 129
             ++D NDN+P F +    + +P + A G P+YT+ A D DSG N ++ + L +G  G   
Sbjct: 883  LLDDVNDNSPAFPAPEDTVLLPPNTAPGTPIYTLRALDPDSGVNSRVTFTLLAGGGG--- 939

Query: 130  LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDN--PPV 187
             F VD T+GH+ L + L       H + + A D G PP +S+  + + VQDV      P 
Sbjct: 940  AFTVDPTTGHVRLMRPLGPSGGPAHELELEARDGGSPPRTSHFRLRVVVQDVGTRGLAPR 999

Query: 188  FERSEYFVSVSEALPAKSQV 207
            F    Y V +     A +QV
Sbjct: 1000 FNSPTYRVDLPSGTTAGTQV 1019

Calcium-dependent cell-adhesion protein.

Homo sapiens (taxid: 9606)

>sp|Q6V1P9|PCD23_HUMAN Protocadherin-23 OS=Homo sapiens GN=DCHS2 PE=2 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 113/211 (53%), Gaps = 5/211 (2%)

Query: 6   LDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYA 65
           L+ S PI Y I SGD  G F++    G IRT   LDHE   V++L+VQA  GS P  S  
Sbjct: 405 LNSSEPIFYRISSGDLGGKFSIHPRLGTIRTRKPLDHETQPVVVLTVQAQLGSAPACSST 464

Query: 66  QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNF 125
           +V +T+ D NDN P F  T+  + + ++   G  LY   A D+DSG NG IRY +AS   
Sbjct: 465 EVNITVMDVNDNHPAFLRTSDEIRISQTTPPGTALYLARAEDRDSGRNGLIRYSIASPQP 524

Query: 126 GDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNP 185
           G   +FA+D+  G L L+  L     +  T+ + A DQG  P ++ L + + ++    +P
Sbjct: 525 G---VFAIDRALGVLFLNGSLGAGEQRELTLTLRAEDQGVHPQAALLVLTVVIEKREHSP 581

Query: 186 P-VFERSEYFVSVSEAL-PAKSQVRTTCTPL 214
              FE   Y V VSE+L P    ++T   PL
Sbjct: 582 SWTFEHLVYQVEVSESLSPMTQMLQTQAHPL 612

Calcium-dependent cell-adhesion protein.

Homo sapiens (taxid: 9606)

>sp|Q5F226|FAT2_MOUSE Protocadherin Fat 2 OS=Mus musculus GN=Fat2 PE=2 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 99/186 (53%)

Query: 14   YTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIED 73
            Y I   +P   FT D  TGV+     LD+E     + +V+A+  +   +S A V+V +ED
Sbjct: 2205 YNIVEEEPLMLFTTDFKTGVLTVTGPLDYESKNKHVFTVRATDTALGSFSEATVEVLVED 2264

Query: 74   RNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAV 133
             NDN P F       SV E +    P+  ++A D+DSG N  + Y +       S+ F +
Sbjct: 2265 INDNPPTFSQLVYSTSVSEGSPAQTPVIQLLASDQDSGQNQDVSYQIVEDGSDVSKFFRI 2324

Query: 134  DQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEY 193
            + ++G +   + LDYE  Q   + V ATD+GDPP++    V++ V D+NDNPP F   +Y
Sbjct: 2325 NGSTGEMFTIQELDYEAHQHFRVKVRATDRGDPPLTGETLVVVNVSDINDNPPEFREPQY 2384

Query: 194  FVSVSE 199
              +VSE
Sbjct: 2385 EANVSE 2390

Plays a role in the migration of epidermal cells (By similarity). May modulate the extracellular space surronding parallel fibers of cerebellar during development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
195159445	1812	GL15349 [Drosophila persimilis] gi|19411	0.686	0.106	0.588	7e-65
198475184	3586	GA26057 [Drosophila pseudoobscura pseudo	0.686	0.053	0.583	2e-64
194758613	3563	GF14875 [Drosophila ananassae] gi|190615	0.693	0.054	0.583	1e-63
270006362	3474	dachsous [Tribolium castaneum]	0.708	0.057	0.572	1e-63
195032868	3594	GH10500 [Drosophila grimshawi] gi|193904	0.711	0.055	0.545	2e-63
195437548	3471	GK24627 [Drosophila willistoni] gi|19416	0.711	0.057	0.577	7e-63
195388388	3639	GJ19658 [Drosophila virilis] gi|19414931	0.711	0.054	0.531	4e-62
195118208	2980	GI18019 [Drosophila mojavensis] gi|19391	0.708	0.066	0.528	7e-62
195470324	3556	GE15963 [Drosophila yakuba] gi|194173559	0.686	0.054	0.567	1e-61
194853658	3556	GG24633 [Drosophila erecta] gi|190660069	0.693	0.054	0.558	1e-61

>gi|195159445|ref|XP_002020589.1| GL15349 [Drosophila persimilis] gi|194117539|gb|EDW39582.1| GL15349 [Drosophila persimilis]

 Score =  253 bits (646), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 155/197 (78%), Gaps = 4/197 (2%)

Query: 11   PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVT 70
            P+RY+I+SGDP+GYF ++  +G IR A  LDHE  G +LL++QA++G PP+Y + QV + 
Sbjct: 850  PVRYSIYSGDPDGYFGIEGGSGNIRIARPLDHEAKGQVLLNIQATAGEPPVYGHTQVNIE 909

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
            +ED NDNAPEFE++ +R+SVPE+A LG PLY   A DKDSG +G++ Y LA     + +L
Sbjct: 910  VEDVNDNAPEFEASLVRISVPENADLGAPLYAAHAHDKDSGSSGQVTYSLAR----ERQL 965

Query: 131  FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
            FA+D  SGHL LS+HLDYETSQRHT+VV+ATD G PP+++NLT+L++VQDVNDNPPVFER
Sbjct: 966  FAIDPRSGHLVLSQHLDYETSQRHTLVVTATDGGVPPLATNLTILVDVQDVNDNPPVFER 1025

Query: 191  SEYFVSVSEALPAKSQV 207
             EY V+VSE+ P  SQ+
Sbjct: 1026 DEYAVNVSESRPVNSQI 1042

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198475184|ref|XP_002132853.1| GA26057 [Drosophila pseudoobscura pseudoobscura] gi|198138709|gb|EDY70255.1| GA26057 [Drosophila pseudoobscura pseudoobscura]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 155/197 (78%), Gaps = 4/197 (2%)

Query: 11   PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVT 70
            P+RY+I+SGDP+GYF ++  +G IR A  LDHE  G +LL++QA++G PP+Y + QV + 
Sbjct: 860  PVRYSIYSGDPDGYFGIEGGSGNIRIARPLDHEAKGQVLLNIQATAGEPPVYGHTQVNIE 919

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
            +ED NDNAPEFE++ +R+SVPE+A LG PLY   A DKDSG +G++ Y LA     + +L
Sbjct: 920  VEDVNDNAPEFEASLVRISVPENADLGAPLYAAHAHDKDSGSSGQVTYSLAR----ERQL 975

Query: 131  FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
            FA+D  SGHL LS+HLDYETSQRH++VV+ATD G PP+++NLT+L++VQDVNDNPPVFER
Sbjct: 976  FAIDPRSGHLVLSQHLDYETSQRHSLVVTATDGGVPPLATNLTILVDVQDVNDNPPVFER 1035

Query: 191  SEYFVSVSEALPAKSQV 207
             EY V+VSE+ P  SQ+
Sbjct: 1036 DEYAVNVSESRPVNSQI 1052

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758613|ref|XP_001961556.1| GF14875 [Drosophila ananassae] gi|190615253|gb|EDV30777.1| GF14875 [Drosophila ananassae]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 152/197 (77%), Gaps = 2/197 (1%)

Query: 11   PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVT 70
            P+RY+I+SGDP+GYF++++ +G IR A  LDHE    +LL++QA+ G PP+Y + QV + 
Sbjct: 858  PMRYSIYSGDPDGYFSIEANSGNIRIAKPLDHEAKSQVLLNIQATVGEPPVYGHTQVNIE 917

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
            +ED NDNAPEFE+  +R+SVPE+A LG PLY   A D+DSG +G++ Y LA  +    RL
Sbjct: 918  VEDVNDNAPEFETNMVRISVPENAELGAPLYAAHAHDRDSGSSGQVTYSLARDS--GKRL 975

Query: 131  FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
            F++D  SGHL LS HLDYETSQRHT+ V+ATD G PP+SSNLT+LL+VQDVNDNPPVFER
Sbjct: 976  FSIDARSGHLVLSHHLDYETSQRHTLTVTATDGGIPPLSSNLTILLDVQDVNDNPPVFER 1035

Query: 191  SEYFVSVSEALPAKSQV 207
             EYFV+VSE+    +Q+
Sbjct: 1036 EEYFVNVSESRSINTQI 1052

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006362|gb|EFA02810.1| dachsous [Tribolium castaneum]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/201 (57%), Positives = 155/201 (77%), Gaps = 2/201 (0%)

Query: 7    DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQ 66
            D+ N IRY+I+SGDPEG+F +D +TG IRTA+ LDHE+   +LL++QA++G PP+Y + Q
Sbjct: 848  DRKN-IRYSIYSGDPEGFFRIDPSTGAIRTASALDHELRSSVLLNIQATNGDPPVYGHTQ 906

Query: 67   VKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFG 126
            V + I+D NDNAPEFES  +R+SVPE+   G+ LY   ARD+DSG NG +RY + + N  
Sbjct: 907  VNIEIQDVNDNAPEFESNVVRISVPENVETGIALYAAHARDRDSGANGVVRYKIVN-NGA 965

Query: 127  DSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPP 186
               LF VD   GHL+L++HLDYET+QRH+++++ATD G PP+S+NLTVL+EVQDVNDNPP
Sbjct: 966  TGGLFNVDPKLGHLTLTRHLDYETTQRHSLIITATDTGIPPLSANLTVLVEVQDVNDNPP 1025

Query: 187  VFERSEYFVSVSEALPAKSQV 207
            VFER+EY  SV E+ P  SQ+
Sbjct: 1026 VFERNEYSKSVEESRPVNSQI 1046

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195032868|ref|XP_001988576.1| GH10500 [Drosophila grimshawi] gi|193904576|gb|EDW03443.1| GH10500 [Drosophila grimshawi]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/209 (54%), Positives = 158/209 (75%), Gaps = 9/209 (4%)

Query: 8    QSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQV 67
            Q +P+RY+I+SGDP+GYF+++  +G IR A  LDHE    +LL++QA+SG PP+Y + QV
Sbjct: 846  QRSPVRYSIYSGDPDGYFSIEPASGNIRIAHPLDHEAKAQVLLNIQATSGEPPVYGHTQV 905

Query: 68   KVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD 127
             + +ED NDNAPEFE++ +R+SVPE+A LG PL+   A DKDSG +G++ Y LA+GN   
Sbjct: 906  NIEVEDVNDNAPEFETSMVRISVPENAELGTPLFAAHAHDKDSGSSGQVTYSLANGNATK 965

Query: 128  ---------SRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEV 178
                     S LFA+D  SGHL LS+HLDYET+QRH+++V+ATD G PP+S++LT+L++V
Sbjct: 966  SGKQKAAQASSLFAIDARSGHLVLSRHLDYETAQRHSLIVTATDAGLPPLSADLTILVDV 1025

Query: 179  QDVNDNPPVFERSEYFVSVSEALPAKSQV 207
            QDVNDNPPVFER EY V+VSE+    +Q+
Sbjct: 1026 QDVNDNPPVFERDEYAVNVSESRSINAQI 1054

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437548|ref|XP_002066702.1| GK24627 [Drosophila willistoni] gi|194162787|gb|EDW77688.1| GK24627 [Drosophila willistoni]

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 157/201 (78%), Gaps = 1/201 (0%)

Query: 8    QSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPLYSYAQ 66
            Q   IRY+I+SGDP+GYF+++S++G IR A  LDHE    +LL++QA SSG PP+Y + Q
Sbjct: 821  QRGGIRYSIYSGDPDGYFSIESSSGNIRIAHPLDHEAKAQVLLNIQATSSGDPPVYGHTQ 880

Query: 67   VKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFG 126
            VK+ +ED NDNAPEFE+T++R+SVPE+A LG PLY   A+DKDSG +G++ Y L+S +  
Sbjct: 881  VKIEVEDVNDNAPEFETTSVRISVPENAELGTPLYAAHAKDKDSGKSGQVTYSLSSLSKK 940

Query: 127  DSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPP 186
               LFA+D +SGHL LS+HLDYE SQRHT++V+A D G P +SSNLT+L++VQDVNDNPP
Sbjct: 941  SLNLFAIDGSSGHLVLSQHLDYEVSQRHTLIVTARDAGTPSLSSNLTILVDVQDVNDNPP 1000

Query: 187  VFERSEYFVSVSEALPAKSQV 207
            +FER EY V++SE  P  +Q+
Sbjct: 1001 LFERDEYAVNISEVRPVNTQI 1021

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388388|ref|XP_002052862.1| GJ19658 [Drosophila virilis] gi|194149319|gb|EDW65017.1| GJ19658 [Drosophila virilis]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 158/209 (75%), Gaps = 9/209 (4%)

Query: 8    QSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQV 67
            Q +P+RY+I+SGDP+GYF+++ T+G IR A  LDHE    +LL++QA+SG PP+Y + QV
Sbjct: 880  QRSPVRYSIYSGDPDGYFSIEPTSGNIRIAHPLDHEAKAQVLLNIQATSGEPPVYGHTQV 939

Query: 68   KVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRY--------- 118
             + +ED NDNAPEFE++ +R+SVPE+A LG PL+   A DKDSG +G++ Y         
Sbjct: 940  NIEVEDVNDNAPEFETSMVRISVPENAELGAPLFAAHAHDKDSGSSGQVTYSLKGNATQQ 999

Query: 119  HLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEV 178
            H+ +   G + LFA+D  SGHL LS+HLDYET+QRH+++V+ATD G PP+S++L++L++V
Sbjct: 1000 HVKALAAGSAPLFAIDARSGHLVLSRHLDYETAQRHSLIVTATDAGLPPLSADLSILVDV 1059

Query: 179  QDVNDNPPVFERSEYFVSVSEALPAKSQV 207
            QDVNDNPPVFER EY V+VSE+    +Q+
Sbjct: 1060 QDVNDNPPVFERDEYAVNVSESRAINAQI 1088

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118208|ref|XP_002003632.1| GI18019 [Drosophila mojavensis] gi|193914207|gb|EDW13074.1| GI18019 [Drosophila mojavensis]

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 112/212 (52%), Positives = 159/212 (75%), Gaps = 13/212 (6%)

Query: 8   QSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQV 67
           Q +P+RY+I+SGDP+GYF+++  +G IR A  LDHE    +LL++QA+SG PP+Y + QV
Sbjct: 214 QRSPVRYSIYSGDPDGYFSIEPASGNIRIARPLDHEAKAQVLLNIQATSGDPPVYGHTQV 273

Query: 68  KVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD 127
            + +ED NDNAPEFE++ +R+SVPE+A LG PL+   A DKDSG +G++ Y + +GN   
Sbjct: 274 NIEVEDVNDNAPEFETSMVRISVPENAELGTPLFAAHAHDKDSGSSGQVTYSI-TGNANA 332

Query: 128 SR------------LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
           ++            LFA+D  SGHL LS+HLDYET+QRH+++V+ATD G PP+S++LT+L
Sbjct: 333 TQPGRGKAQPTGAALFAIDARSGHLVLSRHLDYETAQRHSLIVTATDGGLPPLSADLTIL 392

Query: 176 LEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
           ++VQDVNDNPPVFER EY V+VSE+ P  +Q+
Sbjct: 393 VDVQDVNDNPPVFERDEYAVNVSESRPINAQI 424

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195470324|ref|XP_002087458.1| GE15963 [Drosophila yakuba] gi|194173559|gb|EDW87170.1| GE15963 [Drosophila yakuba]

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 154/199 (77%), Gaps = 6/199 (3%)

Query: 11   PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVT 70
            P+RY+I+SGDP+GYF++++ +G IR A  LDHE    +LL++QA+ G PP+Y + QV + 
Sbjct: 861  PVRYSIYSGDPDGYFSIETNSGNIRIAKPLDHEAKSQVLLNIQATLGEPPVYGHTQVNIE 920

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDS-- 128
            +ED NDNAPEFE++ +R+SVPESA LG PLY   A DKDSG +G++ Y L     GDS  
Sbjct: 921  VEDVNDNAPEFEASMVRISVPESAELGAPLYAAHAHDKDSGSSGQVSYSL----VGDSGK 976

Query: 129  RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF 188
            RLFA+D  SGHL LS+HLDYE+SQRH+++V+ATD G P +S+NLT+L++VQDVNDNPPVF
Sbjct: 977  RLFAIDARSGHLILSQHLDYESSQRHSLIVTATDGGVPSLSTNLTILVDVQDVNDNPPVF 1036

Query: 189  ERSEYFVSVSEALPAKSQV 207
            E+ EY V+VSE+    +Q+
Sbjct: 1037 EKEEYSVNVSESRSINAQI 1055

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194853658|ref|XP_001968202.1| GG24633 [Drosophila erecta] gi|190660069|gb|EDV57261.1| GG24633 [Drosophila erecta]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 154/197 (78%), Gaps = 2/197 (1%)

Query: 11   PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVT 70
            P++Y+I+SGDP+GYF++++ +G IR A  LDHE    +LL++QA+ G PP+Y + QV + 
Sbjct: 861  PVKYSIYSGDPDGYFSIETNSGNIRIAKPLDHEAKSQVLLNIQATLGEPPVYGHTQVNIE 920

Query: 71   IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
            +ED NDNAPEFE++ +R+SVPESA LG PLY   A DKDSG +G++ Y L S +    RL
Sbjct: 921  VEDVNDNAPEFEASMVRISVPESAELGAPLYAAHAHDKDSGSSGQVSYSLVSDS--GKRL 978

Query: 131  FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
            FA+D  SGHLSL++HLDYE+SQRH+++V+ATD G P +S+NLT+L++VQDVNDNPPVFE+
Sbjct: 979  FAIDARSGHLSLTQHLDYESSQRHSLIVTATDGGVPSLSTNLTILVDVQDVNDNPPVFEK 1038

Query: 191  SEYFVSVSEALPAKSQV 207
             EY V+VSE+    +Q+
Sbjct: 1039 EEYSVNVSESRSINAQI 1055

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
FB|FBgn0000497	3503	ds "dachsous" [Drosophila mela	0.697	0.055	0.560	4.6e-57
UNIPROTKB|E1C566	2926	E1C566 "Uncharacterized protei	0.693	0.066	0.434	1.7e-38
UNIPROTKB|F1NB81	2475	F1NB81 "Uncharacterized protei	0.693	0.078	0.434	3.9e-38
WB|WBGene00019994	2779	cdh-1 [Caenorhabditis elegans	0.686	0.069	0.418	3.5e-33
ZFIN|ZDB-GENE-050208-41	3286	dchs1b "dachsous 1b (Drosophil	0.704	0.060	0.401	4.2e-33
RGD|1309878	3278	Dchs1 "dachsous 1 (Drosophila)	0.690	0.059	0.37	4.6e-30
UNIPROTKB|Q6V0I7	4981	FAT4 "Protocadherin Fat 4" [Ho	0.861	0.048	0.333	5e-30
MGI|MGI:2444314	4555	Fat3 "FAT tumor suppressor hom	0.711	0.043	0.372	5.8e-30
UNIPROTKB|E2R353	4591	FAT1 "Uncharacterized protein"	0.693	0.042	0.383	6e-30
UNIPROTKB|F6XXM1	5056	FAT1 "Uncharacterized protein"	0.693	0.038	0.383	7.4e-30

FB|FBgn0000497 ds "dachsous" [Drosophila melanogaster (taxid:7227)]

 Score = 605 (218.0 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 111/198 (56%), Positives = 153/198 (77%)

Query:    10 NPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKV 69
             +P+RY+I+SGDP+GYF++++ +G IR A  LDHE    +LL++QA+ G PP+Y + QV +
Sbjct:   807 SPVRYSIYSGDPDGYFSIETNSGNIRIAKPLDHEAKSQVLLNIQATLGEPPVYGHTQVNI 866

Query:    70 TIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR 129
              +ED NDNAPEFE++ +R+SVPESA LG PLY   A DKDSG +G++ Y L   + G   
Sbjct:   867 EVEDVNDNAPEFEASMVRISVPESAELGAPLYAAHAHDKDSGSSGQVTYSLVKES-GKG- 924

Query:   130 LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFE 189
             LFA+D  SGHL LS+HLDYE+SQRHT++V+ATD G P +S+NLT+L++VQDVNDNPPVFE
Sbjct:   925 LFAIDARSGHLILSQHLDYESSQRHTLIVTATDGGVPSLSTNLTILVDVQDVNDNPPVFE 984

Query:   190 RSEYFVSVSEALPAKSQV 207
             + EY V+VSE+    +Q+
Sbjct:   985 KDEYSVNVSESRSINAQI 1002

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0005886 "plasma membrane" evidence=ISS

GO:0018149 "peptide cross-linking" evidence=IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0004872 "receptor activity" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS;IDA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004871 "signal transducer activity" evidence=NAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP;TAS

GO:0016318 "ommatidial rotation" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP;TAS

GO:0045317 "equator specification" evidence=IMP

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IMP

GO:0007164 "establishment of tissue polarity" evidence=NAS

GO:0001736 "establishment of planar polarity" evidence=IGI;IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0035222 "wing disc pattern formation" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0090176 "microtubule cytoskeleton organization involved in establishment of planar polarity" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IGI

UNIPROTKB|E1C566 E1C566 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 425 (154.7 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 86/198 (43%), Positives = 126/198 (63%)

Query:     9 SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVK 68
             ++ I Y+I SGDP GYF++DS TG + T+  LDHE   VL+L VQA SGSPP YS  +VK
Sbjct:   798 TDDIFYSISSGDPHGYFSIDSDTGQLHTSLPLDHESQAVLILDVQARSGSPPAYSNTRVK 857

Query:    69 VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDS 128
             +++ D NDNAP F S +  + +PE+   G  +YT+ A D+D+G NG++ + L SG  GD 
Sbjct:   858 ISVSDVNDNAPTFPSPSDSILLPEATEPGTTVYTLQAEDRDNGANGQVNFELVSG--GDG 915

Query:   129 RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF 188
               F+V+++SG + L   L YE S  + + + A D G P +SS  T+L+ VQ  +DN P+F
Sbjct:   916 T-FSVERSSGAVRLVGVLQYEASAAYRLSIVARDSGVPQLSSTFTLLVHVQAEHDNGPIF 974

Query:   189 ERSEYFVSVSEALPAKSQ 206
             +   Y V V E +P  ++
Sbjct:   975 DTLTYRVEVREGVPVSTR 992

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NB81 F1NB81 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 425 (154.7 bits), Expect = 3.9e-38, P = 3.9e-38
 Identities = 86/198 (43%), Positives = 126/198 (63%)

Query:     9 SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVK 68
             ++ I Y+I SGDP GYF++DS TG + T+  LDHE   VL+L VQA SGSPP YS  +VK
Sbjct:   806 TDDIFYSISSGDPHGYFSIDSDTGQLHTSLPLDHESQAVLILDVQARSGSPPAYSNTRVK 865

Query:    69 VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDS 128
             +++ D NDNAP F S +  + +PE+   G  +YT+ A D+D+G NG++ + L SG  GD 
Sbjct:   866 ISVSDVNDNAPTFPSPSDSILLPEATEPGTTVYTLQAEDRDNGANGQVNFELVSG--GDG 923

Query:   129 RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF 188
               F+V+++SG + L   L YE S  + + + A D G P +SS  T+L+ VQ  +DN P+F
Sbjct:   924 T-FSVERSSGAVRLVGVLQYEASAAYRLSIVARDSGVPQLSSTFTLLVHVQAEHDNGPIF 982

Query:   189 ERSEYFVSVSEALPAKSQ 206
             +   Y V V E +P  ++
Sbjct:   983 DTLTYRVEVREGVPVSTR 1000

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00019994 cdh-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 379 (138.5 bits), Expect = 3.5e-33, P = 3.5e-33
 Identities = 82/196 (41%), Positives = 117/196 (59%)

Query:    12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTI 71
             ++Y+I+SGD +  F++D  TG I     LD +V   +LL++QA+  S    +  QV + I
Sbjct:   769 VKYSIYSGDQDHNFSIDEDTGKIYVTRYLDADVHDTVLLNIQATLPSGES-NQTQVVIFI 827

Query:    72 EDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLF 131
             ED NDN P+F S+ + +S+ E   L  P Y V A DKD   NG++RY + S + G S   
Sbjct:   828 EDHNDNPPQFSSSLVEISIREDLKLHEPFYVVQASDKDKKKNGEVRYSIISSHPGSS--I 885

Query:   132 AVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERS 191
              +DQ +G LS    LDYE ++ + + V ATD G PP SSN+T+ + V DVNDN P FE+S
Sbjct:   886 EIDQFTGQLSTGSLLDYEATRNYKLRVKATDLGIPPRSSNMTLFIHVLDVNDNAPEFEKS 945

Query:   192 EYFVSVSEALPAKSQV 207
              Y + V E  P K+ V
Sbjct:   946 WYTMEVLENSPPKTIV 961

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

ZFIN|ZDB-GENE-050208-41 dchs1b "dachsous 1b (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 379 (138.5 bits), Expect = 4.2e-33, P = 4.2e-33
 Identities = 82/204 (40%), Positives = 121/204 (59%)

Query:     9 SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVK 68
             S  + YTI +GDP+GYF +D  TG +RT+  LDHE      L +QA SGSPP +   +V+
Sbjct:   799 SKDVTYTISAGDPDGYFMVDPETGALRTSLPLDHESRPFFDLEIQARSGSPPAFGDTRVR 858

Query:    69 VTIEDRNDNAPEF-ESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD 127
             VTI D NDNAP F  S++  L +PE+  +G  +Y V A D+DSG NG++ + L S   G 
Sbjct:   859 VTIADVNDNAPIFFPSSSESLLLPEATKMGTIVYRVQAEDRDSGPNGQLSFDLISS--GG 916

Query:   128 SRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPV 187
              R F V+++SG + L   L Y++  R+ + V A D G P +S+  ++++ +Q  N+  PV
Sbjct:   917 QRTFGVERSSGEVRLIGSLSYDSVPRYDLQVIAKDSGAPQLSATFSLVVHIQAENNQGPV 976

Query:   188 FERSEYFVSVSEALPAKS---QVR 208
             F+   Y V + E  P  +   QVR
Sbjct:   977 FDTITYRVELKENTPLNTNFLQVR 1000

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309878 Dchs1 "dachsous 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 344 (126.2 bits), Expect = 4.6e-30, Sum P(2) = 4.6e-30
 Identities = 74/200 (37%), Positives = 117/200 (58%)

Query:    11 PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTG-VLLLSVQASSGSPPLYSYAQVKV 69
             P+  T+  GDP G F+LDS +G+++T   LD E+ G VL L V+A SG+PP++S A+++V
Sbjct:   804 PVTLTLSGGDPRGLFSLDSASGLLKTLRPLDRELLGPVLELEVRAGSGTPPVFSAARIRV 863

Query:    70 TIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR 129
              ++D NDN+P F +    + +P++ A G P+YT+ A D DSG N ++ + L +G  GD  
Sbjct:   864 LLDDVNDNSPAFPAPEDTVLLPQNTAPGTPVYTLRALDPDSGANSRVTFSLLAG--GDG- 920

Query:   130 LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD--VNDNPPV 187
             LF VD T+GH+ L   L       H + V A D G PP +S+  + + +QD  ++   P 
Sbjct:   921 LFTVDPTTGHVRLMGPLGPPGGPPHELEVEAQDGGSPPRTSHFRLRVVIQDLGIHGLAPR 980

Query:   188 FERSEYFVSVSEALPAKSQV 207
             F+   Y V +       +Q+
Sbjct:   981 FDSPTYRVDLPSGTTTGTQI 1000

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6V0I7 FAT4 "Protocadherin Fat 4" [Homo sapiens (taxid:9606)]

 Score = 352 (129.0 bits), Expect = 5.0e-30, P = 5.0e-30
 Identities = 83/249 (33%), Positives = 131/249 (52%)

Query:     6 LDQSNP--IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPLY 62
             +D+ N   I Y+I  G+ E  F +DST+G +     LD+E T    L +QA  SG+ PL 
Sbjct:  1237 VDEGNNGLIHYSIIKGNEERQFAIDSTSGQVTLIGKLDYEATPAYSLVIQAVDSGTIPLN 1296

Query:    63 SYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLAS 122
             S   + + I D NDN P F  +T+ + V E+  +G  + +V A D DSGDN  + Y +  
Sbjct:  1297 STCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGELVSSVTATDSDSGDNADLYYSITG 1356

Query:   123 GNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVN 182
              N  +   F++   +G + L+K LD+ET   + + ++A DQG PP SS ++V++ V+D N
Sbjct:  1357 TN--NHGTFSISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFN 1414

Query:   183 DNPPVFERSEYFVSVSEALP-AKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTHSTLKSE 241
             DNPP F   + F S+ E +P   S +  T       + GQ S      +    H T+  E
Sbjct:  1415 DNPPSFPPGDIFKSIVENIPIGTSVISVTAHDPDADINGQLSYTIIQQMPRGNHFTI-DE 1473

Query:   242 LNSPLGSNS 250
             +   + +N+
Sbjct:  1474 VKGTIYTNA 1482

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2444314 Fat3 "FAT tumor suppressor homolog 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 351 (128.6 bits), Expect = 5.8e-30, P = 5.8e-30
 Identities = 76/204 (37%), Positives = 117/204 (57%)

Query:     3 ILLLDQSNP----IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS 58
             IL ++ ++P    I Y I  GDP   F +D  TGV++  + LD+EVT V  L+V+AS   
Sbjct:  2204 ILSINATSPEGQGIIYLIIDGDPFQQFNIDFDTGVLKVISPLDYEVTSVYKLTVRASDAL 2263

Query:    59 PPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRY 118
                 +   V + ++D NDN P F+  T   ++ ES+ +G P+  +V+ D DSG+N  +RY
Sbjct:  2264 TGARAEVTVDLLVDDINDNPPVFDQPTYNTTLSESSLIGTPVLQLVSTDADSGNNKLVRY 2323

Query:   119 HLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEV 178
              +    +  +  F +D +SG +  ++ LD+E  Q  T+ V+ATD G P +SS + V + +
Sbjct:  2324 QIVQDTYNSTDYFHIDSSSGLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYI 2383

Query:   179 QDVNDNPPVFERSEYFVSVSEALP 202
              DVNDNPPVF +  Y   VSE  P
Sbjct:  2384 SDVNDNPPVFNQLIYESYVSELAP 2407

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R353 FAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 349 (127.9 bits), Expect = 6.0e-30, Sum P(2) = 6.0e-30
 Identities = 76/198 (38%), Positives = 109/198 (55%)

Query:     6 LDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSY 64
             ++ +  I Y+I SG+  G F++DS TG I    TLD+E +    L+V+A+ G +P L   
Sbjct:  3262 IEANAEITYSIISGNEHGKFSIDSKTGAIFIIETLDYESSHEYYLTVEATDGGTPSLSDV 3321

Query:    65 AQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGN 124
             A V + + D NDN+P F   T    + E A L   + TV+A D D   N +IRY +  GN
Sbjct:  3322 ATVNINVTDINDNSPVFSQDTYTAVISEDALLEQSVITVMADDTDGPSNSRIRYSIIDGN 3381

Query:   125 FGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDN 184
              G    F +D   G + ++K LD ET   +T+ V A+D G PP  +  TV ++V DVNDN
Sbjct:  3382 QGSP--FTIDPAKGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDN 3439

Query:   185 PPVFERSEYFVSVSEALP 202
              PVF +  Y V + E  P
Sbjct:  3440 APVFSKGNYSVIIQENKP 3457

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F6XXM1 FAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 349 (127.9 bits), Expect = 7.4e-30, Sum P(2) = 7.4e-30
 Identities = 76/198 (38%), Positives = 109/198 (55%)

Query:     6 LDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSY 64
             ++ +  I Y+I SG+  G F++DS TG I    TLD+E +    L+V+A+ G +P L   
Sbjct:  3262 IEANAEITYSIISGNEHGKFSIDSKTGAIFIIETLDYESSHEYYLTVEATDGGTPSLSDV 3321

Query:    65 AQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGN 124
             A V + + D NDN+P F   T    + E A L   + TV+A D D   N +IRY +  GN
Sbjct:  3322 ATVNINVTDINDNSPVFSQDTYTAVISEDALLEQSVITVMADDTDGPSNSRIRYSIIDGN 3381

Query:   125 FGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDN 184
              G    F +D   G + ++K LD ET   +T+ V A+D G PP  +  TV ++V DVNDN
Sbjct:  3382 QGSP--FTIDPAKGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDN 3439

Query:   185 PPVFERSEYFVSVSEALP 202
              PVF +  Y V + E  P
Sbjct:  3440 APVFSKGNYSVIIQENKP 3457

GO:0016021 "integral to membrane" evidence=IEA

GO:0008502 "melatonin receptor activity" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24292	DS_DROME	No assigned EC number	0.5583	0.6939	0.0556	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	281
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	1e-32
smart00112	81	smart00112, CA, Cadherin repeats	4e-28
pfam00028	92	pfam00028, Cadherin, Cadherin domain	2e-21
smart00112	81	smart00112, CA, Cadherin repeats	8e-21
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	1e-19
pfam00028	92	pfam00028, Cadherin, Cadherin domain	3e-10
cd00031	98	cd00031, CA_like, Cadherin repeat-like domain	0.004

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score =  115 bits (289), Expect = 1e-32
 Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 2/100 (2%)

Query: 85  TIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSK 144
           +  +SVPE+A  G  + TV A D DSG+NG++ Y + SGN  +  LF++D ++G ++ +K
Sbjct: 1   SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGN--EDGLFSIDPSTGEITTAK 58

Query: 145 HLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDN 184
            LD E    +T+ V+ATD G PP+SS  TV + V DVNDN
Sbjct: 59  PLDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score =  102 bits (257), Expect = 4e-28
 Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 104 VARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQ 163
            A D DSG+NGK+ Y + SGN  D  LF++D  +G ++ +K LD E    +T+ V ATD 
Sbjct: 1   SATDADSGENGKVTYSILSGN--DDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDG 58

Query: 164 GDPPMSSNLTVLLEVQDVNDNPP 186
           G PP+SS  TV + V DVNDN P
Sbjct: 59  GGPPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 85.8 bits (213), Expect = 2e-21
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 89  SVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDY 148
           SVPE+A +G  + TV A D D G NG+I Y +  G  G    F +D  +G LS +K LD 
Sbjct: 4   SVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGW--FRIDPDTGDLSTTKPLDR 61

Query: 149 ETSQRHTIVVSATDQGDPPMSSNLTVLLEVQ 179
           E+   + + V ATD G PP+SS  TV + V 
Sbjct: 62  ESIGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 83.9 bits (208), Expect = 8e-21
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
          + Y+I SG+ +G F++D  TG I T   LD E      L+V+A+  G PPL S A V +T
Sbjct: 13 VTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTIT 72

Query: 71 IEDRNDNAP 79
          + D NDNAP
Sbjct: 73 VLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 81.2 bits (201), Expect = 1e-19
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 10 NPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVK 68
            + Y+I SG+ +G F++D +TG I TA  LD E      L+V A+  G PPL S A V 
Sbjct: 30 GEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDREEQSSYTLTVTATDGGGPPLSSTATVT 89

Query: 69 VTIEDRNDN 77
          +T+ D NDN
Sbjct: 90 ITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
          I Y+I  G P G+F +D  TG + T   LD E  G   L+V A+ SG PPL S   V +T
Sbjct: 31 IFYSILGGGPGGWFRIDPDTGDLSTTKPLDRESIGEYELTVLATDSGGPPLSSTTTVTIT 90

Query: 71 IE 72
          + 
Sbjct: 91 VL 92

Length = 92

>gnl|CDD|206635 cd00031, CA_like, Cadherin repeat-like domain

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 106 RDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGD 165
               SG+  KI    A+G          +  SG L   + LD E    H I VSA   G 
Sbjct: 23  LIASSGEIIKI---SAAGKEALPSWLHWEPHSGILEGLEKLDREDKGVHYISVSAASLGA 79

Query: 166 PPMSSNLTVLLEVQDVNDN 184
               ++    +EV D NDN
Sbjct: 80  NVPQTSSVFSIEVYDENDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. This family also includes the cadherin-like repeats of extracellular alpha-dystroglycan. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
KOG4289|consensus	2531		100.0
KOG4289|consensus	2531		100.0
KOG1219|consensus	4289		100.0
KOG1219|consensus	4289		100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.97
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.94
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.79
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.72
KOG1834|consensus	952		99.69
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.6
KOG1834|consensus	952		99.57
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.34
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	97.36
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.09
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	96.56
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	96.52
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	96.5
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	95.73
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	95.62
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	95.27
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	91.5
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	87.7
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	85.51
TIGR03660	137	T1SS_rpt_143 T1SS-143 repeat domain. This model re	81.13

>KOG4289|consensus

Probab=100.00  E-value=4.4e-41  Score=326.17  Aligned_cols=230  Identities=32%  Similarity=0.443  Sum_probs=214.3

Q ss_pred             CEEEEecCCCcEEEEEEe---CCCCceEEEECCccEEEECcCCCceeccEEEEEEEEE-eCCCCceeEEEEEEEEEecCC
Q psy11062          1 MKILLLDQSNPIRYTIHS---GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVTIEDRND   76 (281)
Q Consensus         1 ~~~~d~d~~~~l~Y~i~~---g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~-dg~~~~~~~~~v~i~V~dvNd   76 (281)
                      ++|.++| .++|.|++..   .-..++|+||+.+|.|++++.||||+...+.|.|.|. -+.|+.+++++|+|.|.|.||
T Consensus       186 v~A~~~~-a~rl~Ysm~al~dsRS~~lFslD~~sG~irta~~lDREt~e~HvlrVtA~d~~~P~~SAtttv~V~V~D~nD  264 (2531)
T KOG4289|consen  186 VKASDPD-AGRLYYSMVALFDSRSQNLFSLDPMSGAIRTAKSLDRETKETHVLRVTAQDHGDPRRSATTTVTVLVLDTND  264 (2531)
T ss_pred             EEecCCC-cCceEEEeeeccchhccccEeeccccccchhhhhhhhhhhheeEEEEEeeecCCCcccceeEEEEEEeecCC
Confidence            3567777 4789999984   2344899999999999999999999999999999999 478899999999999999999


Q ss_pred             CCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEE
Q psy11062         77 NAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTI  156 (281)
Q Consensus        77 ~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l  156 (281)
                      |.|.|++..|..++.||.++|..|.+++|+|.|+++|+.+.|++.+|+  ....|.||+.+|.|+++.+||||+...|+|
T Consensus       265 hsPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~--~~~~f~in~rSGvI~T~a~lDRE~~~~y~L  342 (2531)
T KOG4289|consen  265 HSPVFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGN--AKNVFEINPRSGVISTRAPLDREELESYQL  342 (2531)
T ss_pred             CCcccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCC--ccceeEEcCccceeeccCccCHHhhhheEE
Confidence            999999999999999999999999999999999999999999999974  678999999999999999999999999999


Q ss_pred             EEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecCccccEEEEEeecCCh
Q psy11062        157 VVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTH  235 (281)
Q Consensus       157 ~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g~~~~~~~~~~~~~~~  235 (281)
                      .|+|+|.|.++...++.|.|.|.|+|||+|+|....|.+.|.|+..++++|++|+|+  |.|-|.||.+-|++.+....
T Consensus       343 ~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~At--DrD~g~Ng~VHYsi~Sgn~~  419 (2531)
T KOG4289|consen  343 DVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTAT--DRDKGTNGKVHYSIASGNGR  419 (2531)
T ss_pred             EEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEec--ccCCCcCceEEEEeeccCcc
Confidence            999999999988889999999999999999999999999999999999999999999  99999999999987665443

>KOG4289|consensus

Probab=100.00  E-value=5.4e-39  Score=311.77  Aligned_cols=223  Identities=33%  Similarity=0.518  Sum_probs=210.5

Q ss_pred             EEEEec--CCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEE-eCCCCceeEEEEEEEEEecCCCC
Q psy11062          2 KILLLD--QSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVTIEDRNDNA   78 (281)
Q Consensus         2 ~~~d~d--~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~-dg~~~~~~~~~v~i~V~dvNd~~   78 (281)
                      +|+|.|  +|+.|.|++..|++.+.|.||+.+|.|++..+||||+...|.|.|.|. .|.++...|++|.|.|.|.|||+
T Consensus       292 rAtD~Dsp~Nani~Yrl~eg~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNa  371 (2531)
T KOG4289|consen  292 RATDGDSPPNANIRYRLLEGNAKNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNA  371 (2531)
T ss_pred             EeccCCCCCCCceEEEecCCCccceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCC
Confidence            455555  688999999999999999999999999999999999999999999999 46666677999999999999999


Q ss_pred             CeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEE
Q psy11062         79 PEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVV  158 (281)
Q Consensus        79 P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V  158 (281)
                      |.|....|.+.|.|+..++++|.+|+|+|.|.|.|+.+.|+|..|+  ..+.|.||..+|+|.+..+||+|.. .|.+.|
T Consensus       372 PqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn--~~G~f~id~~tGel~vv~plD~e~~-~ytl~I  448 (2531)
T KOG4289|consen  372 PQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGN--GRGQFYIDSLTGELDVVEPLDFENS-EYTLRI  448 (2531)
T ss_pred             ccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccC--ccccEEEecccceEEEeccccccCC-eeEEEE
Confidence            9999999999999999999999999999999999999999999985  5788999999999999999999988 899999


Q ss_pred             EEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecCccccEEEEE
Q psy11062        159 SATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWST  229 (281)
Q Consensus       159 ~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g~~~~~~~~~  229 (281)
                      +|.|+|.|+++.+..+.|+|+|+|||+|.|....+.++|.|+.+.|..+..+.|.  |.|+|.|+.+.|+.
T Consensus       449 rAqDggrPpLsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqai--dadsg~na~l~y~l  517 (2531)
T KOG4289|consen  449 RAQDGGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAI--DADSGENARLHYSL  517 (2531)
T ss_pred             EcccCCCCCccCCCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecc--cCCCCcccceeeee
Confidence            9999999999999999999999999999999999999999999999999999999  99999999998853

>KOG1219|consensus

Probab=100.00  E-value=1.6e-34  Score=288.60  Aligned_cols=236  Identities=31%  Similarity=0.466  Sum_probs=217.9

Q ss_pred             CEEEEecC--CCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEE-eCCCCceeEEEEEEEEEecCCC
Q psy11062          1 MKILLLDQ--SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVTIEDRNDN   77 (281)
Q Consensus         1 ~~~~d~d~--~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~-dg~~~~~~~~~v~i~V~dvNd~   77 (281)
                      |+|.|.|.  ++.|.|.|..|++.+.|+|+..+|.|++.+.||||....|-|+|.|+ .|.++.++.+.+.|.|.|+|||
T Consensus       975 i~A~dedsgldg~l~Y~I~~gdg~g~FsId~~tG~irTl~~lDrE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvNDn 1054 (4289)
T KOG1219|consen  975 IQARDEDSGLDGELSYKIRTGDGDGIFSIDSTTGSIRTLKALDREKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVNDN 1054 (4289)
T ss_pred             EEEecCCCCccceEEEEEEcCCcceeEEecCCcceEeechhhchhhcceEEEEEEEEecCCCccccceeEEEEEEecCCC
Confidence            35666664  46799999999999999999999999999999999999999999999 5778889999999999999999


Q ss_pred             CCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEE
Q psy11062         78 APEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIV  157 (281)
Q Consensus        78 ~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~  157 (281)
                      +|.|.+..|..+|.||+|.+..|.++.|.|+|...++++.|.|..|+  ..+.|.||+.+|.|...+.||||++.++.|.
T Consensus      1055 ~Pq~s~pvy~asI~enSp~~vsivq~ea~D~Dsssn~kLmykI~sGn--yq~FF~Id~~TG~iTt~r~LDRE~qdEHiLe 1132 (4289)
T KOG1219|consen 1055 VPQFSSPVYYASISENSPETVSIVQAEANDPDSSSNQKLMYKITSGN--YQGFFQIDPETGLITTIRRLDREKQDEHILE 1132 (4289)
T ss_pred             CcccCCceEeeeeccCCCCceEEEEeccCCCCcccCcceEEEEccCC--ccceEEEccccceeeeehhhcccccccceEE
Confidence            99999999999999999999999999999999888999999999985  6899999999999999999999999999999


Q ss_pred             EEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecCccccEEEEEeecCChhh
Q psy11062        158 VSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMTHST  237 (281)
Q Consensus       158 V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g~~~~~~~~~~~~~~~~~  237 (281)
                      |.++|.|.|.+++.+.|.|.|+|+|||+|.|.+..+...++|...+  .+.++.|.  |.|+|.|++++|.+-...-...
T Consensus      1133 VTi~D~gep~l~s~~rviV~IldvNdnsp~Flqk~~~~~v~~r~s~--plyRl~a~--d~DeG~narityniedgde~Fs 1208 (4289)
T KOG1219|consen 1133 VTIQDNGEPWLCSNQRVIVSILDVNDNSPRFLQKKTFLRVPERSSP--PLYRLAAQ--DNDEGNNARITYNIEDGDEVFS 1208 (4289)
T ss_pred             EEEecCCCCccccceEEEEEEeeccCCchhhhhheeEEEeeeccCC--ceeEEEEE--ecCCCcceEEEEecccCceEEE
Confidence            9999999999999999999999999999999999999999998765  88999999  9999999999998776666655


Q ss_pred             hhccC
Q psy11062        238 LKSEL  242 (281)
Q Consensus       238 l~~~~  242 (281)
                      ++..+
T Consensus      1209 ID~~t 1213 (4289)
T KOG1219|consen 1209 IDIAT 1213 (4289)
T ss_pred             EeccC
Confidence            55433

>KOG1219|consensus

Probab=100.00  E-value=1e-33  Score=282.91  Aligned_cols=215  Identities=31%  Similarity=0.483  Sum_probs=201.5

Q ss_pred             cCCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCCCCceeEEEEEEEEEecCCCCCeeccCcE
Q psy11062          7 DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTI   86 (281)
Q Consensus         7 d~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~~~~~~~~~v~i~V~dvNd~~P~f~~~~~   86 (281)
                      +.+.++.|+|++|+ ...|.+|-+||.|.+..+||||....|.|.|+|+|..-++.+++.|.|.|.|+|||+|.|.+..|
T Consensus      2105 ~l~~kv~YsIldg~-~slFtvnf~TG~i~v~~pLd~ea~t~h~l~ieAtd~~~p~~Aea~VeIiV~dIndn~PvFeqlsY 2183 (4289)
T KOG1219|consen 2105 PLGLKVTYSILDGN-TSLFTVNFTTGVILVLIPLDREASTLHELLIEATDAGIPLSAEAKVEIIVGDINDNPPVFEQLSY 2183 (4289)
T ss_pred             CcCCceEEEEecCC-cceEEEecccceEEeccccccccccceEEEEEEeccCCCcceeeEEEEEecccCCCCchhheeeE
Confidence            34566999999988 57899999999999999999999999999999997555689999999999999999999999999


Q ss_pred             EEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECCCC
Q psy11062         87 RLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP  166 (281)
Q Consensus        87 ~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~p  166 (281)
                      ..+++|++++|+.+.++.|+|.|.  |..+.|+|.++ ......|+|+..||+|.+.+.||||+...|.|.|+|+|+|.|
T Consensus      2184 t~sisE~s~igt~viqilATdsDs--n~~isYsl~g~-s~~sk~f~In~sTG~it~~g~ldyE~~q~f~~fvratdggk~ 2260 (4289)
T KOG1219|consen 2184 TISISENSKIGTKVIQILATDSDS--NREISYSLEGN-SEISKPFRINVSTGWITVAGKLDYEENQEFRFFVRATDGGKP 2260 (4289)
T ss_pred             EEEccCCCccCceEEEEEeccCCC--CCceEEEeecC-CccccceEEecccceEEEeeecChhhcceEEEEEEEccCCCc
Confidence            999999999999999999999996  88999999984 367889999999999999999999999999999999999998


Q ss_pred             CCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecCccccEEEE
Q psy11062        167 PMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWS  228 (281)
Q Consensus       167 ~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g~~~~~~~~  228 (281)
                       +++.+.|.|+|.|+|||+|.|.+..|.+.|+|.+.-|..|..+.|.  |+|..+..++.|.
T Consensus      2261 -lSseviv~V~VeD~Ndn~Pef~q~~~ea~vsd~a~~g~fit~v~a~--D~Dssd~lk~ey~ 2319 (4289)
T KOG1219|consen 2261 -LSSEVIVEVHVEDFNDNPPEFNQRNYEAFVSDPARSGHFITVVNAH--DLDSSDHLKLEYN 2319 (4289)
T ss_pred             -ccccEEEEEEehhcCCCCchhccccceeecCCCccceeEEEEEEec--cCCccchhhhhhc
Confidence             8899999999999999999999999999999999999999999998  9998888777764

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.97  E-value=1.7e-29  Score=211.57  Aligned_cols=177  Identities=44%  Similarity=0.643  Sum_probs=161.7

Q ss_pred             EEEEecCC--CcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEe-CCCCceeEEEEEEEEEecCCCC
Q psy11062          2 KILLLDQS--NPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNA   78 (281)
Q Consensus         2 ~~~d~d~~--~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i~V~dvNd~~   78 (281)
                      +|.|.|.+  +.+.|+|.++...++|.|++.+|.|++++.||||....|.|.|.|.| |.+.++++..+.|.|.|+||++
T Consensus        20 ~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~~~~~~~~~v~I~V~d~Nd~~   99 (199)
T cd00031          20 SATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGGPPLSSTATVTVTVLDVNDNP   99 (199)
T ss_pred             EEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCcCcceeEEEEEEEEccCCCCC
Confidence            46666664  78999999877668999999999999999999999999999999997 6666668999999999999999


Q ss_pred             CeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEE
Q psy11062         79 PEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVV  158 (281)
Q Consensus        79 P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V  158 (281)
                      |.|....|.+.|.|+.++|+.++++.|+|+|.+.++.++|+|.++.  ....|.|++.+|.|.+.++||+|....|.|.|
T Consensus       100 P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~--~~~~f~i~~~~G~i~~~~~ld~e~~~~~~l~v  177 (199)
T cd00031         100 PVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILSGN--DKELFSIDPNTGIITLAKPLDREEKSSYELTV  177 (199)
T ss_pred             CcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCC--CCCEEEEeCCceEEEeCCccCCccCceEEEEE
Confidence            9999889999999999999999999999999988899999999853  24799999999999999999999999999999


Q ss_pred             EEEECCCCCCeEEEEEEEEEEe
Q psy11062        159 SATDQGDPPMSSNLTVLLEVQD  180 (281)
Q Consensus       159 ~a~D~~~p~~~~~~~v~I~V~D  180 (281)
                      .|+|.+.+.+++++.++|.|.|
T Consensus       178 ~a~D~~~~~~~~~~~i~i~v~d  199 (199)
T cd00031         178 VATDGGGPPLSSTATVTVTVLD  199 (199)
T ss_pred             EEEECCCCCceeEEEEEEEEEC
Confidence            9999998888999999999876

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.94  E-value=1.5e-25  Score=187.60  Aligned_cols=179  Identities=34%  Similarity=0.457  Sum_probs=155.3

Q ss_pred             EEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECCC
Q psy11062         86 IRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGD  165 (281)
Q Consensus        86 ~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~  165 (281)
                      |.+.|+||++.|+.++++.|.|+|.+.++.++|+|.+++  ...+|.|++.+|.|++.+.||||....|.|.|+|+|.+.
T Consensus         2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~--~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~   79 (199)
T cd00031           2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGN--EDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGG   79 (199)
T ss_pred             eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCC--CcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCc
Confidence            688999999999999999999999988889999999864  237999999999999999999999999999999999988


Q ss_pred             CCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecCccccEEEEEeecCC--hhhhhc-cC
Q psy11062        166 PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMT--HSTLKS-EL  242 (281)
Q Consensus       166 p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g~~~~~~~~~~~~~~--~~~l~~-~~  242 (281)
                      |.+++++.++|.|.|+||++|.|....|.+.|.|+.++|+.++++.|+  |.|.+.++.++|.+.....  ...++. .|
T Consensus        80 ~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~--D~D~~~~~~~~y~l~~~~~~~~f~i~~~~G  157 (199)
T cd00031          80 PPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTAT--DADSGENAKLTYSILSGNDKELFSIDPNTG  157 (199)
T ss_pred             CcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEE--cCCCCCCccEEEEEeCCCCCCEEEEeCCce
Confidence            877899999999999999999999889999999999999999999999  8998889999999888874  555543 45


Q ss_pred             CCCCCCCcceEEEEEEEEEEecCcce
Q psy11062        243 NSPLGSNSFQLSILWYSIFLRTNTMQ  268 (281)
Q Consensus       243 ~~~~~~~~~~~~~~~y~~~~~~~~~~  268 (281)
                      ...+....-.-....|++.++..++.
T Consensus       158 ~i~~~~~ld~e~~~~~~l~v~a~D~~  183 (199)
T cd00031         158 IITLAKPLDREEKSSYELTVVATDGG  183 (199)
T ss_pred             EEEeCCccCCccCceEEEEEEEEECC
Confidence            44444433334444889998888875

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.79  E-value=2.4e-18  Score=126.81  Aligned_cols=92  Identities=43%  Similarity=0.641  Sum_probs=87.2

Q ss_pred             EEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEEC-C
Q psy11062         86 IRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQ-G  164 (281)
Q Consensus        86 ~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~-~  164 (281)
                      |++.|+|+.++|+.++.+.|.|+|.+.|+.+.|+|.+++  ....|.|++.+|.|++.++||||....|.|.|.|+|. +
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~--~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~   78 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGN--PDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGG   78 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETT--STTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTT
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCc--ccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCC
Confidence            789999999999999999999999999999999999974  3789999999999999999999999999999999999 8


Q ss_pred             CCCCeEEEEEEEEEE
Q psy11062        165 DPPMSSNLTVLLEVQ  179 (281)
Q Consensus       165 ~p~~~~~~~v~I~V~  179 (281)
                      .|++++++.|+|+|+
T Consensus        79 ~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   79 SPPLSSTATVTINVL   93 (93)
T ss_dssp             SSEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEC
Confidence            899999999999985

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>smart00112 CA Cadherin repeats

Probab=99.72  E-value=6.5e-17  Score=115.47  Aligned_cols=79  Identities=48%  Similarity=0.759  Sum_probs=73.3

Q ss_pred             EeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCC
Q psy11062        106 RDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNP  185 (281)
Q Consensus       106 ~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~  185 (281)
                      +|+|.|.|+.++|+|.+++.  ..+|.|++.+|.|++.++||||....|.|.|+|+|.+.|++++.+.|+|.|.|+|||+
T Consensus         1 ~D~D~g~n~~i~Y~i~~~~~--~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~   78 (79)
T smart00112        1 TDADSGENGKVTYSILSGNE--DGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNA   78 (79)
T ss_pred             CCCCCCcCcEEEEEEecCCC--CCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCC
Confidence            48898889999999998642  3899999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q psy11062        186 P  186 (281)
Q Consensus       186 P  186 (281)
                      |
T Consensus        79 P   79 (79)
T smart00112       79 P   79 (79)
T ss_pred             C
Confidence            8

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>KOG1834|consensus

Probab=99.69  E-value=1.1e-15  Score=141.68  Aligned_cols=150  Identities=27%  Similarity=0.412  Sum_probs=125.5

Q ss_pred             EEECCc--cEEEECcCCCceeccEEEEEEEEEe-CCCC------ceeEEEEEEEEEecCCCCCeeccCcEEEEEeCCCCC
Q psy11062         26 TLDSTT--GVIRTAATLDHEVTGVLLLSVQASS-GSPP------LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAAL   96 (281)
Q Consensus        26 ~Id~~~--G~i~~~~~LD~E~~~~~~l~v~a~d-g~~~------~~~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~   96 (281)
                      -+|+.+  |.|+.+.+||.|.++.|+|+|+|.| |.++      .+..++|+|.|.|+|+++|.|...-|.+.|.|.. .
T Consensus        85 VvdK~TGegvlRaK~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK-~  163 (952)
T KOG1834|consen   85 VVDKYTGEGVLRAKEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGK-V  163 (952)
T ss_pred             EEeccCCceEEeecCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecce-e
Confidence            346654  5788899999999999999999995 3322      3456899999999999999999999999999885 4


Q ss_pred             CceEEEEEEEeCCC-CCCceE-EEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECCCCCCeEEEEE
Q psy11062         97 GLPLYTVVARDKDS-GDNGKI-RYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTV  174 (281)
Q Consensus        97 gt~v~~v~a~D~D~-g~~~~i-~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~p~~~~~~~v  174 (281)
                      -..|+++.|.|.|- +++++| .|.|..    .+-+|.|| +.|.|+..++|+|.+...|.|+|.|.|+|..+..+-+.|
T Consensus       164 yd~il~veAiD~DCspq~sqIC~YEI~t----~d~PFaId-n~G~irnTekLny~ke~~Y~ltVtAyDCg~kraa~d~lV  238 (952)
T KOG1834|consen  164 YDSILRVEAIDKDCSPQYSQICEYEITT----PDVPFAID-NDGNIRNTEKLNYTKEHQYKLTVTAYDCGKKRAASDSLV  238 (952)
T ss_pred             eeeeEEEEeecCCCCCcccceeEEEecC----CCCceEEc-CCCccccccccccccceeEEEEEEEEecccccccCcceE
Confidence            56799999999995 455555 688887    36689998 579999999999999999999999999999766666888


Q ss_pred             EEEEEeC
Q psy11062        175 LLEVQDV  181 (281)
Q Consensus       175 ~I~V~Dv  181 (281)
                      +|+|...
T Consensus       239 ~v~Vkp~  245 (952)
T KOG1834|consen  239 TVHVKPT  245 (952)
T ss_pred             EEEecCc
Confidence            8888653

>smart00112 CA Cadherin repeats

Probab=99.60  E-value=8.8e-15  Score=104.35  Aligned_cols=75  Identities=43%  Similarity=0.638  Sum_probs=67.0

Q ss_pred             EecCCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEe-CCCCceeEEEEEEEEEecCCCCC
Q psy11062          5 LLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNAP   79 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i~V~dvNd~~P   79 (281)
                      |.+.++.+.|+|.+++..++|+|++.+|.|++.++||||....|.|.|.|.+ |.++..+++.|+|.|.|+|||+|
T Consensus         4 D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112        4 DSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             CCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence            3446788999999877668999999999999999999999999999999996 45568899999999999999988

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>KOG1834|consensus

Probab=99.57  E-value=5.9e-14  Score=130.44  Aligned_cols=191  Identities=21%  Similarity=0.173  Sum_probs=140.1

Q ss_pred             EEEEEecCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCC--C-ceEEEEEeeCCCCCceeeEEeCce--eEEEE
Q psy11062         68 KVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD--N-GKIRYHLASGNFGDSRLFAVDQTS--GHLSL  142 (281)
Q Consensus        68 ~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~--~-~~i~y~l~~~~~~~~~~F~id~~t--G~i~~  142 (281)
                      ....--+|-|.|+. ...|.+.|.||...-.....+.|-|.|.+.  . ...-|.|.+.+. .-..--+|+.+  |.|+.
T Consensus        20 ~~~aarankhkpwi-e~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq~v-PFdavVvdK~TGegvlRa   97 (952)
T KOG1834|consen   20 HHHAARANKHKPWI-EEEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQPV-PFDAVVVDKYTGEGVLRA   97 (952)
T ss_pred             ccccccccccCccc-ccceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCCCC-CceEEEEeccCCceEEee
Confidence            34556688887865 456899999997544444568888999632  2 245688887432 11223347766  57888


Q ss_pred             ceecCccCcceEEEEEEEEECCCCC------CeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEE
Q psy11062        143 SKHLDYETSQRHTIVVSATDQGDPP------MSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYV  216 (281)
Q Consensus       143 ~~~LD~E~~~~y~l~V~a~D~~~p~------~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd  216 (281)
                      +.+||+|.++.|+|+|+|.|+|.-+      .+..++|+|+|.|+|+.+|+|..+.|.+.|.|+. +-..|++|.|.  |
T Consensus        98 K~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK-~yd~il~veAi--D  174 (952)
T KOG1834|consen   98 KEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGK-VYDSILRVEAI--D  174 (952)
T ss_pred             cCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecce-eeeeeEEEEee--c
Confidence            8999999999999999999998743      6778999999999999999999999999999988 55699999999  7


Q ss_pred             eecC-ccccEE-EEEeecCChhhhhccCCCCCCCCcceEEEEEEEEEEe
Q psy11062        217 LVEG-QCSLVC-WSTLRLMTHSTLKSELNSPLGSNSFQLSILWYSIFLR  263 (281)
Q Consensus       217 ~d~g-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~  263 (281)
                      .|.+ .++.+. |.+....-.+.+++.|.........--...-|.|+|+
T Consensus       175 ~DCspq~sqIC~YEI~t~d~PFaIdn~G~irnTekLny~ke~~Y~ltVt  223 (952)
T KOG1834|consen  175 KDCSPQYSQICEYEITTPDVPFAIDNDGNIRNTEKLNYTKEHQYKLTVT  223 (952)
T ss_pred             CCCCCcccceeEEEecCCCCceEEcCCCccccccccccccceeEEEEEE
Confidence            6655 446665 6777766667788777665444443333444666555

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.34  E-value=1.1e-11  Score=91.09  Aligned_cols=72  Identities=35%  Similarity=0.566  Sum_probs=64.5

Q ss_pred             CEEEEec--CCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC--CCCceeEEEEEEEEE
Q psy11062          1 MKILLLD--QSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG--SPPLYSYAQVKVTIE   72 (281)
Q Consensus         1 ~~~~d~d--~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg--~~~~~~~~~v~i~V~   72 (281)
                      ++|.|.|  .|+.+.|+|..+++.++|.|++.+|.|++.++||||....|.|.|.|+|+  .|++++++.|+|.|.
T Consensus        18 v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   18 VTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSPPLSSTATVTINVL   93 (93)
T ss_dssp             EEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSSEEEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCCCCEEEEEEEEEEC
Confidence            4677887  67899999999998899999999999999999999999999999999965  567888899999874

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=97.36  E-value=0.00023  Score=51.03  Aligned_cols=62  Identities=31%  Similarity=0.507  Sum_probs=39.2

Q ss_pred             EEEEEeCCCCCCceEEEEEEEeCCCCCC--ceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccC
Q psy11062         86 IRLSVPESAALGLPLYTVVARDKDSGDN--GKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYET  150 (281)
Q Consensus        86 ~~~~v~En~~~gt~v~~v~a~D~D~g~~--~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~  150 (281)
                      ...+|+|..++|+.|+.+ |.|.-....  ..-.|++...  ....+|.++..+|.|.+..++|||+
T Consensus         3 i~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~--~~~~~~~v~~~tG~L~v~~rIDRE~   66 (84)
T PF08266_consen    3 IRYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSE--GNSQYFRVNEKTGDLFVSERIDREE   66 (84)
T ss_dssp             EEEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-S--SSS-SEEE-TTTSEEEESS--SCCC
T ss_pred             eEEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeec--CCcceeEecCCceeEEeCCccCHHH
Confidence            467899999999999999 445432211  1235676653  3578999999999999999999996

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.09  E-value=0.0076  Score=43.77  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=42.7

Q ss_pred             CCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEE
Q psy11062         77 NAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTI  156 (281)
Q Consensus        77 ~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l  156 (281)
                      ..|-|.+..|.+.|+.+...|..+++|.-.|=.  .+..+.|.-..      ..|+|.+ .|.|++++++.....+ -.|
T Consensus         2 C~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~--~~~~~~~~ssD------pdF~V~~-DGsVy~~r~v~l~~~~-~~F   71 (90)
T PF08758_consen    2 CRPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCT--GRRRVIFESSD------PDFRVLE-DGSVYAKRPVQLSSEQ-RSF   71 (90)
T ss_dssp             ---B--S-EEEE----SS-SS--EEE---B--S--S---EEEE---------SEEEEET-TTEEEEES--S-SSS--EEE
T ss_pred             CcCCcccceEEEEcCchhhCCcEEEEEEeccCC--CCCceEEecCC------CCEEEcC-CCeEEEeeeEecCCCc-eEE
Confidence            358899999999999999999999999887764  24456766544      3799975 6999999999875443 479


Q ss_pred             EEEEEECCCC
Q psy11062        157 VVSATDQGDP  166 (281)
Q Consensus       157 ~V~a~D~~~p  166 (281)
                      .|.|.|....
T Consensus        72 ~V~a~D~~~~   81 (90)
T PF08758_consen   72 TVHAWDSQTQ   81 (90)
T ss_dssp             EEEEEETTTT
T ss_pred             EEEEECCCCC
Confidence            9999999873

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=96.56  E-value=0.042  Score=40.54  Aligned_cols=89  Identities=21%  Similarity=0.287  Sum_probs=56.7

Q ss_pred             EEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEc--------eecCccCcceEEEEEEEEECCCCCCeEEE
Q psy11062        101 YTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLS--------KHLDYETSQRHTIVVSATDQGDPPMSSNL  172 (281)
Q Consensus       101 ~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~--------~~LD~E~~~~y~l~V~a~D~~~p~~~~~~  172 (281)
                      +++.++|+|.+..  ..+.+... ....+.|.|++ .|.....        +.|...+...-.|++.+.|+.      +.
T Consensus         2 G~Lt~sD~D~gd~--~~~s~~~~-~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt------t~   71 (99)
T TIGR01965         2 GQLTISDADAGQA--HFIAQTDA-AGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT------SQ   71 (99)
T ss_pred             CceEEeCCCCCCc--eEEecccc-cCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC------eE
Confidence            3578899997653  44555321 13567788876 4643332        223333444567888899962      78


Q ss_pred             EEEEEEEeCCCCCCeeeCCceEEEEeCCC
Q psy11062        173 TVLLEVQDVNDNPPVFERSEYFVSVSEAL  201 (281)
Q Consensus       173 ~v~I~V~DvND~~P~f~~~~y~~~v~E~~  201 (281)
                      .|+|.|.-.|| +|+..... ...+.|+.
T Consensus        72 ~vtItI~GtND-apvi~~~~-~g~v~ED~   98 (99)
T TIGR01965        72 TVTITITGAND-AAVIGGAD-TGSVTEDS   98 (99)
T ss_pred             EEEEEEEccCC-CCEEeccc-ceeEecCC
Confidence            89999999999 78775442 46666654

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=96.52  E-value=0.051  Score=39.88  Aligned_cols=69  Identities=23%  Similarity=0.374  Sum_probs=52.3

Q ss_pred             EEecCCCcEEEEEEeCC---CCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCCCCceeEEEEEEEEEecCC
Q psy11062          4 LLLDQSNPIRYTIHSGD---PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRND   76 (281)
Q Consensus         4 ~d~d~~~~l~Y~i~~g~---~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~~~~~~~~~v~i~V~dvNd   76 (281)
                      .|.| +..++|++...+   -..|.++++.++.++-. +.+.+ ...|.+.|.|+|+.+ .+....++|.|.+.|+
T Consensus        25 ~d~d-~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~~~-~g~~~i~v~a~D~~g-~~~~~~f~i~V~~~~~   96 (97)
T smart00736       25 TDAD-GDTLTYSATLSDGSALPSWLSFDSDTGTLSGT-PTNSD-VGSLSLKVTATDSSG-ASASDTFTITVVNTND   96 (97)
T ss_pred             ECCC-CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCCCC-CcEEEEEEEEEECCC-CEEEEEEEEEEeCCCC
Confidence            4555 678999997543   23699999999888874 44433 356999999998774 5677889999998887

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=96.50  E-value=0.074  Score=39.04  Aligned_cols=72  Identities=22%  Similarity=0.261  Sum_probs=53.0

Q ss_pred             EEeCCCCCCceEEEEEeeCC-CCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECCCCCCeEEEEEEEEEEeCCC
Q psy11062        105 ARDKDSGDNGKIRYHLASGN-FGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVND  183 (281)
Q Consensus       105 a~D~D~g~~~~i~y~l~~~~-~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND  183 (281)
                      ..|+|   +..++|++...+ .....|...|+.++.+.= .+... ..+.|.+.|.|+|..+  .+....++|.|.+.||
T Consensus        24 F~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~G-tP~~~-~~g~~~i~v~a~D~~g--~~~~~~f~i~V~~~~~   96 (97)
T smart00736       24 FTDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSG-TPTNS-DVGSLSLKVTATDSSG--ASASDTFTITVVNTND   96 (97)
T ss_pred             eECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEE-ECCCC-CCcEEEEEEEEEECCC--CEEEEEEEEEEeCCCC
Confidence            35776   447899887432 124569999988877655 34443 3567999999999986  6788899999999887

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=95.73  E-value=0.18  Score=37.25  Aligned_cols=86  Identities=22%  Similarity=0.226  Sum_probs=57.8

Q ss_pred             CEEEEecCCCcEEEEEEeC-CCCceEEEECCccEEEEC--------cCCCceeccEEEEEEEEEeCCCCceeEEEEEEEE
Q psy11062          1 MKILLLDQSNPIRYTIHSG-DPEGYFTLDSTTGVIRTA--------ATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTI   71 (281)
Q Consensus         1 ~~~~d~d~~~~l~Y~i~~g-~~~~~F~Id~~~G~i~~~--------~~LD~E~~~~~~l~v~a~dg~~~~~~~~~v~i~V   71 (281)
                      |.++|.|.+....+++... ...+.|.|++ +|.....        ..|.--..-.-+|++.+.||.     +..|+|.|
T Consensus         4 Lt~sD~D~gd~~~~s~~~~~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt-----t~~vtItI   77 (99)
T TIGR01965         4 LTISDADAGQAHFIAQTDAAGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT-----SQTVTITI   77 (99)
T ss_pred             eEEeCCCCCCceEEecccccCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC-----eEEEEEEE
Confidence            4678888888888888532 2347899987 5755432        123332333457888888873     77899999


Q ss_pred             EecCCCCCeeccCcEEEEEeCCC
Q psy11062         72 EDRNDNAPEFESTTIRLSVPESA   94 (281)
Q Consensus        72 ~dvNd~~P~f~~~~~~~~v~En~   94 (281)
                      .-.|| +|...... ...+.|+.
T Consensus        78 ~GtND-apvi~~~~-~g~v~ED~   98 (99)
T TIGR01965        78 TGAND-AAVIGGAD-TGSVTEDS   98 (99)
T ss_pred             EccCC-CCEEeccc-ceeEecCC
Confidence            99999 58765433 46677763

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=95.62  E-value=0.93  Score=36.49  Aligned_cols=128  Identities=21%  Similarity=0.263  Sum_probs=69.3

Q ss_pred             cEEEEEE-EEEeCCCCceeEEEEEEEEEecCCCCCeeccCcEEEEEeCCCCC-CceEEEEEEEeCCCCCCceEEEEEeeC
Q psy11062         46 GVLLLSV-QASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAAL-GLPLYTVVARDKDSGDNGKIRYHLASG  123 (281)
Q Consensus        46 ~~~~l~v-~a~dg~~~~~~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~-gt~v~~v~a~D~D~g~~~~i~y~l~~~  123 (281)
                      ..|.+.+ .|.|..+- ..+..+...+. ++..+|.+.. .....+..+... |..-..+.++|...+. ..-..+|.+|
T Consensus        15 G~Y~l~~~~a~D~agN-~~~~~~~~~~~-iD~T~Ptisi-~~~~~~~~g~~v~~~~~i~i~~tD~~~~~-~i~sv~l~Gg   90 (158)
T PF13750_consen   15 GSYTLTVVTATDAAGN-TSTSTVSETFT-IDNTPPTISI-SDGASVANGSTVYGLVNISINVTDNSDDS-KITSVSLTGG   90 (158)
T ss_pred             ccEEEEEEEEEecCCC-EEEEEEeeEEE-EcCCCCEEEE-ecCCccCCCccccceeeeEEEEEeCCCCc-eEEEEEEECC
Confidence            3689999 78876532 23333332232 3555787755 112223333322 3344567788877544 3446777766


Q ss_pred             CCCCceeeEEeCc-eeEEEEc--eec-CccCcceEEEEEEEEECCCCCCeEEEEEEEEEE
Q psy11062        124 NFGDSRLFAVDQT-SGHLSLS--KHL-DYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQ  179 (281)
Q Consensus       124 ~~~~~~~F~id~~-tG~i~~~--~~L-D~E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~  179 (281)
                      .....-....... .|...+.  +.+ ..|....|.|+|.|.|..+  ...+..+.....
T Consensus        91 ~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aG--N~~~~si~F~y~  148 (158)
T PF13750_consen   91 PASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAG--NQSTKSISFSYM  148 (158)
T ss_pred             cccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEEecCC--CEEEEEEEEEEe
Confidence            4333323332221 2333222  111 3367889999999999887  466666665554

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=95.27  E-value=0.021  Score=40.87  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=24.9

Q ss_pred             EEEEEEeCCCCceEEEECCccEEEECcCCCceecc
Q psy11062         12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTG   46 (281)
Q Consensus        12 l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~   46 (281)
                      ..++++++....+|.+++.+|.|+++..+|||+.+
T Consensus        34 ~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~LC   68 (84)
T PF08266_consen   34 RNFRIVSEGNSQYFRVNEKTGDLFVSERIDREELC   68 (84)
T ss_dssp             TTBEEE-SSSS-SEEE-TTTSEEEESS--SCCCC-
T ss_pred             cceEEeecCCcceeEecCCceeEEeCCccCHHHHC
Confidence            35677766667899999999999999999999875

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>TIGR00845 caca sodium/calcium exchanger 1

Probab=91.50  E-value=14  Score=38.08  Aligned_cols=130  Identities=20%  Similarity=0.229  Sum_probs=68.8

Q ss_pred             cCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEc----------
Q psy11062         74 RNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLS----------  143 (281)
Q Consensus        74 vNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~----------  143 (281)
                      .||..+.+.-..-...|.||.  |+.-..|.-...|.+....+.|+..+|......-|.  ..+|.|.-.          
T Consensus       395 ~dd~~s~i~Fe~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~--~~sGTLtF~PGEt~KtItV  470 (928)
T TIGR00845       395 ENDPVSKIFFEPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYE--FTEGTLVFKPGETQKEFRI  470 (928)
T ss_pred             ccCCcceEEecCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCcc--ccCceEEECCCceEEEEEE
Confidence            455555555454466799984  777777766655655556788988866432222222  223433221          


Q ss_pred             ---eecCccCcceEEEEEEEEECCC-------------CCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEE
Q psy11062        144 ---KHLDYETSQRHTIVVSATDQGD-------------PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV  207 (281)
Q Consensus       144 ---~~LD~E~~~~y~l~V~a~D~~~-------------p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v  207 (281)
                         ..=-+|..+.|.+.+.--..+.             .........+|.|.| ||++|.|.-..-...|.|+.  |..-
T Consensus       471 ~IIDDdi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlD-DD~aGIfsFe~~~~sV~Es~--G~vt  547 (928)
T TIGR00845       471 GIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILD-DDHAGIFTFEEDVFHVSESI--GIME  547 (928)
T ss_pred             EEccCCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEec-CcccCcccccCceEEEEcCC--CEEE
Confidence               1112344555555543221110             011122345666777 68899876544467788874  4443


Q ss_pred             EEE
Q psy11062        208 RTT  210 (281)
Q Consensus       208 ~~v  210 (281)
                      .+|
T Consensus       548 vtV  550 (928)
T TIGR00845       548 VKV  550 (928)
T ss_pred             EEE
Confidence            333

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=87.70  E-value=4.3  Score=26.89  Aligned_cols=60  Identities=20%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             CCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECCCCCCeEEEEEEEEE
Q psy11062        112 DNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEV  178 (281)
Q Consensus       112 ~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V  178 (281)
                      .+-...|+|.+   ....+..+...+-.+.. .   ....+.|.|.|+|.|..+........+.|.|
T Consensus         6 ~~~~Y~Y~l~g---~d~~W~~~~~~~~~~~~-~---~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I   65 (66)
T PF07495_consen    6 ENIRYRYRLEG---FDDEWITLGSYSNSISY-T---NLPPGKYTLEVRAKDNNGKWSSDEKSLTITI   65 (66)
T ss_dssp             TTEEEEEEEET---TESSEEEESSTS-EEEE-E---S--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred             CceEEEEEEEC---CCCeEEECCCCcEEEEE-E---eCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence            34566777876   23555655433212222 1   2257899999999997764333335666655

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=85.51  E-value=6.4  Score=28.48  Aligned_cols=47  Identities=13%  Similarity=0.175  Sum_probs=28.2

Q ss_pred             CCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCCCCc
Q psy11062          9 SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPL   61 (281)
Q Consensus         9 ~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~~~~   61 (281)
                      +..+.|+-  .++  .|+|.+ .|.|++++++...... -++.|.|.|.....
T Consensus        36 ~~~~~~~s--sDp--dF~V~~-DGsVy~~r~v~l~~~~-~~F~V~a~D~~~~~   82 (90)
T PF08758_consen   36 RRRVIFES--SDP--DFRVLE-DGSVYAKRPVQLSSEQ-RSFTVHAWDSQTQE   82 (90)
T ss_dssp             ---EEEE-----S--EEEEET-TTEEEEES--S-SSS--EEEEEEEEETTTTE
T ss_pred             CCceEEec--CCC--CEEEcC-CCeEEEeeeEecCCCc-eEEEEEEECCCCCe
Confidence            34566655  445  699987 5999999998876443 47999999876443

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain

Probab=81.13  E-value=24  Score=27.61  Aligned_cols=55  Identities=24%  Similarity=0.331  Sum_probs=35.5

Q ss_pred             EEEceecCcc---CcceEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCC
Q psy11062        140 LSLSKHLDYE---TSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEA  200 (281)
Q Consensus       140 i~~~~~LD~E---~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~  200 (281)
                      +.+.++||..   ..-...|.|.|+|..+-  .+...+.|.|.|  | .|...... ...|.|+
T Consensus        70 ftL~~~lDH~~g~d~l~l~~~v~a~D~DGD--~s~~~l~VtI~D--D-~P~~~~~~-~~~V~E~  127 (137)
T TIGR03660        70 FTLEGPLDHAAGSDELTLNFPIIATDFDGD--TSSITLPVTIVD--D-VPTITDVD-ALTVDED  127 (137)
T ss_pred             EEEcccccCCCCCceEEEeeeEEEEeCCCC--ccccEEEEEEEC--C-CCeecccc-ceEEecc
Confidence            3444555542   23457788999998763  334588888888  6 58775543 3677774

This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
2yst_A	119	Solution Structure Of The Third Cadherin Domain Fro		1e-15
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		2e-15
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		7e-15
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		9e-15
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		3e-05
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		1e-14
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		2e-14
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		2e-14
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		3e-05
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		2e-14
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		3e-05
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		1e-13
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		2e-04
1l3w_A	546	C-Cadherin Ectodomain Length = 546		2e-13
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		3e-13
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		6e-13
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		1e-12
2ee0_A	114	Solution Structures Of The Ca Domain Of Human Proto		1e-10
1q1p_A	212	E-Cadherin Activation Length = 212		3e-10
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		3e-10
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		3e-10
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		3e-10
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		3e-10
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		4e-10
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		5e-10
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		5e-10
3q2l_A	213	Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213		6e-10
3q2n_A	213	Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213		1e-09
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		1e-09
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		1e-09
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		3e-04
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		2e-09
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		4e-09
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		8e-09
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		7e-09
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		3e-07
4apx_B	242	Crystal Structure Of Mouse Cadherin-23 Ec1-2 And Pr		5e-07
3ubf_A	316	Crystal Structure Of Drosophila N-Cadherin Ec1-3, I		8e-07
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		3e-06
1suh_A	146	Amino-Terminal Domain Of Epithelial Cadherin In The		9e-06
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		1e-04
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		5e-04
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		3e-04

>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human Protocadherin 7 Length = 119

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 61/112 (54%)
Query: 75  NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVD 134
           NDN+P FE +     + E++A G P+  + A D D G NG+I Y   +      RL  +D
Sbjct: 8   NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 135 QTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPP 186
           +TSG LS+   +D E   +    V A D+G PP +   TV+L ++D NDN P
Sbjct: 68  ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 7/186 (3%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGDN---GKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D   N     I Y + S +       +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEY 193
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D+NDN PVF  S Y
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY 226
Query: 194 FVSVSE 199
              V E
Sbjct: 227 QGQVPE 232

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 27/234 (11%)
Query: 1   MKILLLDQSNP------IRYTIHSGDPE----GYFTLDSTTG-VIRTAATLDHEVTGVLL 49
           M +  +D  +P      +RY I S  P       FT+++ TG +I  AA LD E      
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 50  LSVQAS--SGSPP--LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAA-LGLPLYTVV 104
           L +QA+   G+P   L + A   +T+ D NDN PEF + T    VPE+   + +   TV 
Sbjct: 188 LIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVT 247
Query: 105 ARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTS--GHLSLSKHLDYETSQRHTIVVSATD 162
            +D+         Y ++ G+         D  S  G +++ K +D+ET++   + V+A +
Sbjct: 248 DKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAEN 307
Query: 163 Q-------GDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRT 209
           Q         PP S+  TV + V DVN+N P F  +   +   E L A + + T
Sbjct: 308 QVPLAKGIQHPPQST-ATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTT 359

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 11/186 (5%)
Query: 2   KILLLDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
           ++L  D  N P+ + +   +   +F ++  TGV+     LD E      +    S     
Sbjct: 31  QLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV 90
Query: 61  LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
           +    +V + + D NDNAP F +    + +PE+  +G P++ V A D D G  G + Y  
Sbjct: 91  ITR--KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 148
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMS--SNLTVLL- 176
                  S  FA+D   G +++ + LDYE +Q + + V+ATDQ    P+S  +NL +++ 
Sbjct: 149 QPP----SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIIT 204
Query: 177 EVQDVN 182
           ++QD++
Sbjct: 205 DMQDMD 210

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 88  LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
           L + E   +G  +  ++ARD D+         L  G  G+  SR FAV+  +G + L + 
Sbjct: 17  LLISEDTPVGSSVTQLLARDMDND-------PLVFGVSGEEASRFFAVEPDTGVVWLRQP 69
Query: 146 LDYETSQRHTIVVSATD-QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAK 204
           LD ET    T+  S +D QG         V ++V DVNDN P F    Y V + E  P  
Sbjct: 70  LDRETKSEFTVEFSVSDHQG----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV- 124
Query: 205 SQVRTTCTPLYVL 217
                  TP++++
Sbjct: 125 ------GTPIFIV 131

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 7/178 (3%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 49  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERS 191
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D+NDN PVF  S
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS 226

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 9   SNPIRYTIHSGDPEG-YFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS--SGSPPLYSYA 65
           S  I+Y I SGD  G  F ++  TG I     LD E      L+ QA     + PL   +
Sbjct: 32  SKKIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPS 90
Query: 66  QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLAS 122
           +  + ++D NDNAPEF +     +VPE + LG  +  V A D D    G++ K+ Y +  
Sbjct: 91  EFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILE 150
Query: 123 GNFGDSRLFAVDQTSGHLSLS-KHLDYETSQRHTIVVSATDQG--DPPMSSNLTVLLEVQ 179
           G       F+++  +  +  +  ++D E  + + +V+ A D G     +S   T+ + + 
Sbjct: 151 G----QPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLT 206
Query: 180 DVNDNPPVFERSEYFVSVSE 199
           DVNDNPP F +S Y  SV E
Sbjct: 207 DVNDNPPKFAQSLYHFSVPE 226

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 2   KILLLDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
           ++L  D  N P+ + +   +   +F ++  TGV+     LD E      +    S     
Sbjct: 32  QLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV 91
Query: 61  LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
           +    +V + + D NDNAP F +    + +PE+  +G P++ V A D D G  G + Y  
Sbjct: 92  ITR--KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 149
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMS--SNLTVLL 176
                  S  FA+D   G +++ + LDYE +Q + + V+ATDQ    P+S  +NL +++
Sbjct: 150 QPP----SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIII 204

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 88  LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
           L + E   +G  +  ++ARD D+         L  G  G+  SR FAV+  +G + L + 
Sbjct: 18  LLISEDTPVGSSVTQLLARDMDND-------PLVFGVSGEEASRFFAVEPDTGVVWLRQP 70
Query: 146 LDYETSQRHTIVVSATD-QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAK 204
           LD ET    T+  S +D QG         V ++V DVNDN P F    Y V + E  P  
Sbjct: 71  LDRETKSEFTVEFSVSDHQG----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV- 125
Query: 205 SQVRTTCTPLYVL 217
                  TP++++
Sbjct: 126 ------GTPIFIV 132

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 2   KILLLDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
           ++L  D  N P+ + +   +   +F ++  TGV+     LD E      +    S     
Sbjct: 32  QLLARDMDNDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV 91
Query: 61  LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
           +    +V + + D NDNAP F +    + +PE+  +G P++ V A D D G  G + Y  
Sbjct: 92  ITR--KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 149
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMS--SNLTVLL 176
                  S  FA+D   G +++ + LDYE +Q + + V+ATDQ    P+S  +NL +++
Sbjct: 150 QPP----SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIII 204

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 88  LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
           L + E   +G  +  ++ARD D+         L  G  G+  SR FAV+  +G + L + 
Sbjct: 18  LLISEDTPVGSSVTQLLARDMDND-------PLVFGVPGEEASRFFAVEPDTGVVWLRQP 70
Query: 146 LDYETSQRHTIVVSATD-QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAK 204
           LD ET    T+  S +D QG         V ++V DVNDN P F    Y V + E  P  
Sbjct: 71  LDRETKSEFTVEFSVSDHQG----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV- 125
Query: 205 SQVRTTCTPLYVL 217
                  TP++++
Sbjct: 126 ------GTPIFIV 132

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 2   KILLLDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
           ++L  D  N P+ + +   +   +F ++  TGV+     LD E      +    S     
Sbjct: 32  QLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV 91
Query: 61  LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
           +    +V + +   NDNAP F +    + +PE+  +G P++ V A D D G  G + Y  
Sbjct: 92  ITR--KVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 149
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMS--SNLTVLL 176
                  S  FA+D   G +++ + LDYE +Q + + V+ATDQ    P+S  +NL +++
Sbjct: 150 QP----PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIII 204

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 88  LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
           L + E   +G  +  ++ARD D+         L  G  G+  SR FAV+  +G + L + 
Sbjct: 18  LLISEDTPVGSSVTQLLARDMDND-------PLVFGVSGEEASRFFAVEPDTGVVWLRQP 70
Query: 146 LDYETSQRHTIVVSATD-QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAK 204
           LD ET    T+  S +D QG         V ++V  VNDN P F    Y V + E  P  
Sbjct: 71  LDRETKSEFTVEFSVSDHQG----VITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPV- 125
Query: 205 SQVRTTCTPLYVL 217
                  TP++++
Sbjct: 126 ------GTPIFIV 132

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 11/204 (5%)
Query: 7   DQSNPIRYTI----HSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPL 61
           D+ N + Y+I        P+G F ++  TG +     LD E     +LS  A S    P+
Sbjct: 35  DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 94
Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRY 118
               ++ + + D+NDN P+F     R SV E    G  +  V A D+D      NG + Y
Sbjct: 95  EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 154
Query: 119 HLASGNFGDS--RLFAVDQTSGHLSL-SKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
            +   +  +    LF +++ +G +SL    LD E    +T+ V ATD     +S     +
Sbjct: 155 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 214
Query: 176 LEVQDVNDNPPVFERSEYFVSVSE 199
           +++ D NDN P+F+   Y   V E
Sbjct: 215 IQITDANDNAPIFDPKTYTALVPE 238

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 11/204 (5%)
Query: 7   DQSNPIRYTI----HSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPL 61
           D+ N + Y+I        P+G F ++  TG +     LD E     +LS  A S    P+
Sbjct: 184 DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 243
Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRY 118
               ++ + + D+NDN P+F     R SV E    G  +  V A D+D      NG + Y
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303
Query: 119 HLASGNFGDS--RLFAVDQTSGHLSL-SKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
            +   +  +    LF +++ +G +SL    LD E    +T+ V ATD     +S     +
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 363
Query: 176 LEVQDVNDNPPVFERSEYFVSVSE 199
           +++ D NDN P+F+   Y   V E
Sbjct: 364 IQITDANDNAPIFDPKTYTALVPE 387

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 25/210 (11%)
Query: 7   DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAAT----LDHEVTGVLLLSVQASSGSPPLY 62
           D  + I Y I      G F +D  +GV+RT  T    LD E   VL +  +  +G     
Sbjct: 141 DTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEY--VLYVKAEDQNGK---V 195
Query: 63  SYAQVKVTIEDR-----NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIR 117
              + + T E+R        AP+F   +    +PE+      + ++ A+   S  + +IR
Sbjct: 196 DDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAK---SFADREIR 252
Query: 118 YHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQR---HTIVVSAT-DQGDPPMSSNLT 173
           Y L +   G +  F +  TSG + L+K LD+E  ++   ++++V+AT D G    S +LT
Sbjct: 253 YTLKAQGQG-AGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLT 311
Query: 174 VLLEVQDVNDNPPVFERSEYFV-SVSEALP 202
           +   V DVNDN P FE  +Y   +V E +P
Sbjct: 312 I--RVTDVNDNAPKFELPDYQAHNVDEDIP 339

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 48  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 107
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 108 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 167
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDN 184
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D+NDN
Sbjct: 168 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDN 218

>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 75  NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNF-GDSRLFAV 133
           NDN P F+   + + +PE+A +G  +  + A D D G N +IRY   +       RLFA+
Sbjct: 8   NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 134 DQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVN 182
           + T+G +++ + LD E +  H + V A+D    P  +  TV + V DVN
Sbjct: 68  NNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARA--TVTINVTDVN 114

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 46  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 105
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 106 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 165
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 166 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 212

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 49  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 215

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S L+  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF       SV E A  G  +  V A D D      N  I Y + S +       +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLSL-SKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + +G +S+ +  LD E+   +T+VV A D     +S+    ++ V+D
Sbjct: 167 RDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  +G +     LD E+     L   A       + +   + + + D NDN P
Sbjct: 47  PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD--NGKIRYHLAS--GNFGDSRLFAVDQ 135
           EF       SVPE +  G  + TV A D D  +  NG +RY + S   +     +F ++ 
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINN 166
Query: 136 TSGH-LSLSKHLDYETSQRHTIVVSATD-QGDPP--MSSNLTVLLEVQD 180
            +G  ++++  LD E  Q++T+++ ATD +G+P   +S+  T ++ V D
Sbjct: 167 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +    L S   SS    +    ++ +T+ D+NDN P
Sbjct: 47  PVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
           EF     + SV E A  G  +  V A D D      N  I Y + S +    D  +F ++
Sbjct: 107 EFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTIN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATD-QGD 165
           + +G +S ++  LD E+   +T+VV A D QG+
Sbjct: 167 RNTGVISVVTTGLDRESFPTYTLVVQAADLQGE 199

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 88  LSVPESAALGLPLYTV-VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLSLS 143
           +S PE+     P   V +  +KD    GK+ Y + +G   D+    +F +++ +G L ++
Sbjct: 7   ISSPENEKGPFPKNLVQIKSNKDK--EGKVFYSI-TGQGADTPPVGVFIIERETGWLKVT 63
Query: 144 KHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-ALP 202
           + LD E    +T+   A       +   + +L+ V D NDN P F +  +  SV E ALP
Sbjct: 64  EPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALP 123
Query: 203 AKSQVRTTCT 212
             S +  T T
Sbjct: 124 GTSVMEVTAT 133

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  +G +     LD E+     L   A       + +   + + + D NDN P
Sbjct: 47  PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGD--NGKIRYHLAS--GNFGDSRLFAVDQ 135
           EF       SVPE +  G  + TV A D D  +  NG +RY + S   +     +F ++ 
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINN 166
Query: 136 TSGH-LSLSKHLDYETSQRHTIVVSATD-QGDPP--MSSNLTVLLEVQD 180
            +G  ++++  LD E  Q++T+++ ATD +G+P   +S+  T ++ V D
Sbjct: 167 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 12/160 (7%)
Query: 12  IRYTIHSGDPEG-YFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLYSYAQVK 68
           I+Y I SG+  G  F +D  +G I    TLD E      L  QA     + PL   ++  
Sbjct: 36  IKY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFI 94
Query: 69  VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLASGNF 125
           V ++D NDN PEF       +VPE + +G  +  V A D D    G++ K+ Y +  G  
Sbjct: 95  VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-- 152
Query: 126 GDSRLFAVDQTSGHLSLS-KHLDYETSQRHTIVVSATDQG 164
                F+V+  +G +  +  ++D E  + + +V+ A D G
Sbjct: 153 --QPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMG 190

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 107 DKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQG-D 165
           D DSGD G I+Y L+    G   +F +D  SG++  +K LD E   ++T++  A D+  +
Sbjct: 28  DIDSGD-GNIKYILSGEGAG--TIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
Query: 166 PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTC 211
            P+      +++VQD+NDNPP F    Y  +V    P +S V T+ 
Sbjct: 85  RPLEPPSEFIVKVQDINDNPPEFLHEIYHANV----PERSNVGTSV 126

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 16  IHSGDPEG-YFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS--GSPPLYSYAQVKVTIE 72
           I SGD  G  F ++  TG I+    LD E   V +L  QA +     P+   ++  + I 
Sbjct: 38  ILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIH 97
Query: 73  DRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLASGNFGDSR 129
           D NDN P F       +VPE A +G  +  V A D D    G++ K+ Y +  G      
Sbjct: 98  DINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG----QP 153
Query: 130 LFAVDQTSGHLSLS-KHLDYETSQRHTIVVSATDQG 164
            F+V+  +G +  +  ++D E  +++ +V+ A D G
Sbjct: 154 YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMG 189

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 107 DKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQ-GD 165
           D+D GD G ++Y L+    GD  LF +++ +G +  +K LD E    + +   A ++   
Sbjct: 27  DQDRGD-GSLKYILSGDGAGD--LFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTG 83
Query: 166 PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS-QVRTTCTPLYVLVEGQCSL 224
            P+      ++++ D+NDN P+F +  Y  +V E     +  V+ T T       G  + 
Sbjct: 84  RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAK 143
Query: 225 VCWSTLRLMTHSTLKSE 241
           V +S L+   + +++SE
Sbjct: 144 VVYSILQGQPYFSVESE 160

>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And Protocadherin-15 Ec1-2 Form I Length = 242

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 48  LLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVV--- 104
           +++ VQ  +       Y +V++ + DRNDN+P F+  +   +V E   +G  ++T     
Sbjct: 94  IVVQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGD 153
Query: 105 --ARDKDSGDNGKIRYHLASG--NFGDSRLFAVD-QTSGHLSLSKHLDYETSQRHTIVVS 159
             A D D G NG+I Y +     +   +  F +    +G++ L K L+YE   R+ +++ 
Sbjct: 154 NGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQ 213
Query: 160 ATDQG 164
           A D+ 
Sbjct: 214 ANDRA 218

>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I Length = 316

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 7   DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAAT----LDHEVTGVLLLSVQASSGSPPLY 62
           D  + I Y I      G F +D  +GV+RT  T    LD E   VL +  +  +G     
Sbjct: 136 DTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEY--VLYVKAEDQNGK---V 190
Query: 63  SYAQVKVTIEDR-----NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIR 117
              + + T E+R        AP+F   +    +PE+      + ++ A+   S  + +IR
Sbjct: 191 DDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAK---SFADREIR 247
Query: 118 YHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQR---HTIVVSAT-DQGDPPMSSNLT 173
           Y L +   G +  F +  TSG + L+K LD+E  ++   ++++V+AT D G    S +LT
Sbjct: 248 YTLKAQGQG-AGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLT 306
Query: 174 VLLEVQDVNDN 184
           +   V DVNDN
Sbjct: 307 I--RVTDVNDN 315

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 41  DHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPL 100
           ++E+T  ++      S  PP    ++  + + D NDNAP F       SVPE + LG  +
Sbjct: 68  EYELTAHIIDRRNNRSLEPP----SKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSV 123
Query: 101 YTVVARDKDS---GDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIV 157
             V A D D      +  + Y +  GN      F VD +    +    LD E+   + I+
Sbjct: 124 TKVTAEDADDPTVAGHATVTYQIIKGN----EYFTVDDSGVIFTARADLDRESQSAYEII 179
Query: 158 VSATDQ-GDPPMSSNLTVLLEVQD 180
           V A D  G    SS  TV++ + D
Sbjct: 180 VKAKDALGLTGESSTATVIIRLTD 203

>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The Calcium Bound State, Nmr, 20 Structures Length = 146

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 21  PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
           P G F ++  TG ++    LD E +   +L S   SS    +    ++ +T+ D+NDN P
Sbjct: 49  PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 80  EFESTTIRLSVPESAALGLPLYTVVARDKDSGDN 113
           EF       SV E A  G  +  V A D D   N
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN 142

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 20  DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS-PPLYSYAQVKVTIEDRNDNA 78
           DP+G F ++  TG +    TLD E      L V+ +  S   L     ++V + D+NDN 
Sbjct: 46  DPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNR 105
Query: 79  PEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYHL--ASGNFGDSRLFAVD 134
           P F        V E +  G  +  + A D D  + DN  +RY++   + +     +F +D
Sbjct: 106 PIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYID 165
Query: 135 QTSGHLSL---SKHLDYET--SQRHTIVVSATD 162
              G +        LD ET  + ++ +++ A D
Sbjct: 166 PEKGDIVTVVSPALLDRETLENPKYELIIEAQD 198

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 49/118 (41%)
Query: 90  VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYE 149
           +PE+     P       D D  +  K R      +      F +++ +G +S+++ LD E
Sbjct: 10  IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRE 69
Query: 150 TSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
           T   + + V  TD     +   + + + V D NDN P+F    Y   V E  P  + V
Sbjct: 70  TIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV 127

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 10/155 (6%)
Query: 20  DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLY-SYAQVKVTIEDRNDNA 78
           DP+G F ++  +G +     LD E      L V+ +  S  +     ++ +++ D+NDN 
Sbjct: 45  DPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNR 104
Query: 79  PEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYHL--ASGNFGDSRLFAVD 134
           P F+       V E +  G  +  + A D D  S DN  +RY++   +       +F +D
Sbjct: 105 PMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYID 164
Query: 135 QTSGHLSLSKH---LDYETSQ--RHTIVVSATDQG 164
              G +        LD ET +  ++ +V+ A D G
Sbjct: 165 PEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMG 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	2e-57
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	2e-41
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	7e-57
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	1e-45
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	3e-29
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	7e-57
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	5e-53
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	3e-49
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	7e-48
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	5e-29
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	6e-56
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	4e-53
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	6e-49
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	8e-43
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-31
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	1e-55
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	5e-53
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	1e-51
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	4e-45
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-30
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-55
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	7e-51
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-48
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-41
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-34
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-21
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-08
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-07
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	8e-54
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	3e-50
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	4e-26
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	5e-17
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	3e-53
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	4e-49
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	5e-47
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	4e-27
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	5e-09
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	1e-51
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	4e-32
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	3e-16
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	4e-50
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	9e-34
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	4e-48
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-34
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-47
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-22
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	3e-47
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	2e-34
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	4e-46
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	2e-32
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	9e-45
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	5e-34
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	2e-43
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	4e-17
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	5e-08
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-34
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-08
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	5e-08
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	3e-31
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	9e-20
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	2e-27
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	4e-19
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	1e-22
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	8e-12
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	4e-22
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	3e-12
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	1e-21
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	1e-12
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	4e-19
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	3e-12
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	1e-17
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	8e-12
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	7e-17
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	4e-12
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	9e-09
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	4e-06
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	3e-05

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  182 bits (463), Expect = 2e-57
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 7/175 (4%)

Query: 11  PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVT 70
           P+ + +   +   +F ++  TGV+     LD E      +    S          +V + 
Sbjct: 41  PLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV--ITRKVNIQ 98

Query: 71  IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
           + D NDNAP F +    + +PE+  +G P++ V A D D G  G + Y         S  
Sbjct: 99  VGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP----PSPF 154

Query: 131 FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMSSNLTVLLEVQDVNDN 184
           FA+D   G +++ + LDYE +Q + + V+ATDQ    P+S+   + + + D+ D 
Sbjct: 155 FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  140 bits (356), Expect = 2e-41
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 75  NDNAPEFESTTIR--LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFA 132
            +  P F +      L + E   +G  +  ++ARD D   N  + + ++      SR FA
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEE--ASRFFA 56

Query: 133 VDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSE 192
           V+  +G + L + LD ET    T+  S +D           V ++V DVNDN P F    
Sbjct: 57  VEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQP 113

Query: 193 YFVSVSEALPAKSQV 207
           Y V + E  P  + +
Sbjct: 114 YSVRIPENTPVGTPI 128

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  184 bits (469), Expect = 7e-57
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 13/211 (6%)

Query: 6   LDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS--SGSPPLY 62
           LD  +  I+Y +        F ++  TG I     LD E      L+ QA     + PL 
Sbjct: 28  LDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLE 87

Query: 63  SYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYH 119
             ++  + ++D NDNAPEF +     +VPE + LG  +  V A D D    G++ K+ Y 
Sbjct: 88  PPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYS 147

Query: 120 LASGNFGDSRLFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQG--DPPMSSNLTVLL 176
           +  G       F+++  +  +     ++D E  + + +V+ A D G     +S   T+ +
Sbjct: 148 ILEGQP----YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTV 203

Query: 177 EVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
            + DVNDNPP F +S Y  SV E +   + +
Sbjct: 204 TLTDVNDNPPKFAQSLYHFSVPEDVVLGTAI 234

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  155 bits (393), Expect = 1e-45
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 19/183 (10%)

Query: 12  IRYTIHSGDPEGYFTLDSTTGVIRTAAT-LDHEVTGVLLLSVQAS---SGSPPLYSYAQV 67
           + Y+I  G P  YF+++  T +I+TA   +D E     L+ +QA      S  L     +
Sbjct: 144 LVYSILEGQP--YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTL 201

Query: 68  KVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD 127
            VT+ D NDN P+F  +    SVPE   LG  +  V A D+D G+N +  Y +  G+   
Sbjct: 202 TVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGD--G 259

Query: 128 SRLFAV----DQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-------PMSSNLTVLL 176
           + LF +        G + L K LD+ET + +T+ V A +           P     TV +
Sbjct: 260 TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKI 319

Query: 177 EVQ 179
            V+
Sbjct: 320 VVE 322

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  112 bits (281), Expect = 3e-29
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)

Query: 90  VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYE 149
           + E +     L   +  D D G + KI+Y L+    G   +F ++  +G +   K LD E
Sbjct: 10  LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGT--IFQINDITGDIHAIKRLDRE 66

Query: 150 TSQRHTIVVSATDQ-GDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
               +T+   A D   + P+      +++VQD+NDN P F    Y  +V E     + V
Sbjct: 67  EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSV 125

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  190 bits (484), Expect = 7e-57
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 13/209 (6%)

Query: 7   DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPL 61
           D++  +RY++        P G F ++  +G +     LD E+     L   A       +
Sbjct: 29  DKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQV 88

Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYH 119
            +   + + + D NDN PEF       SVPE +  G  + TV A D D  +  NG +RY 
Sbjct: 89  ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148

Query: 120 LASGN--FGDSRLFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPP---MSSNLT 173
           + S         +F ++  +G +  ++  LD E  Q++T+++ ATD    P   +S+  T
Sbjct: 149 ILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTAT 208

Query: 174 VLLEVQDVNDNPPVFERSEYFVSVSEALP 202
            ++ V DVNDNPP F    ++  V E   
Sbjct: 209 AVITVTDVNDNPPEFTAMTFYGEVPENRV 237

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  180 bits (458), Expect = 5e-53
 Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 19/199 (9%)

Query: 12  IRYTIHSGDPEGYFTL----DSTTGVIRTAATLDHEVTGVLLLSVQAS-------SGSPP 60
             Y I  GDP G F +    +S  G++     +D E   + +L+V A            P
Sbjct: 259 AAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHP 318

Query: 61  LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
             S A V VT+ D N+N P F      +   E    G  L T+ A+D D      IRY  
Sbjct: 319 PQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTK 377

Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQ----RHTIVVSATDQGDPPMSSNLTVLL 176
            S     +    +D  +G ++    LD E+       +     A+D G PPMS   T+ +
Sbjct: 378 LSDP---ANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQI 434

Query: 177 EVQDVNDNPPVFERSEYFV 195
            + D+NDN P     E   
Sbjct: 435 YLLDINDNAPQVLPQEAET 453

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  170 bits (432), Expect = 3e-49
 Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 25/219 (11%)

Query: 12  IRYTIHSGDPE----GYFTLDSTTGVIRTAA-TLDHEVTGVLLLSVQAS-SGSPP---LY 62
           +RY I S  P       FT+++ TG I T A  LD E      L +QA+     P   L 
Sbjct: 145 LRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLS 204

Query: 63  SYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG--KIRYHL 120
           + A   +T+ D NDN PEF + T    VPE+  + + +  +   DKD          Y +
Sbjct: 205 NTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRI 263

Query: 121 ASGNFGDSRLFAVDQTS----GHLSLSKHLDYETSQRHTIVVSATDQGD------PPMSS 170
           + G+   +  FA+        G +++ K +D+ET++   + V+A +Q         P  S
Sbjct: 264 SGGD--PTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQS 321

Query: 171 NLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRT 209
             TV + V DVN+NP  F  +   +   E L A + + T
Sbjct: 322 TATVSVTVIDVNENP-YFAPNPKIIRQEEGLHAGTMLTT 359

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  166 bits (422), Expect = 7e-48
 Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 12/194 (6%)

Query: 7   DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL----LSVQAS-SGSPPL 61
                IRYT  S DP  +  +D   G I T A LD E   V       +  AS +G PP+
Sbjct: 368 YMQQNIRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPM 426

Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG-KIRYHL 120
                +++ + D NDNAP+           E+         + A D D   N     + L
Sbjct: 427 SGTGTLQIYLLDINDNAPQVLPQEA--ETCETPEPNSI--NITALDYDIDPNAGPFAFDL 482

Query: 121 ASGNFGDSRLFAVDQTSG-HLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQ 179
                   R + +++ +G    L+  + +  +  + + +  TD G+PP S+   + ++V 
Sbjct: 483 PLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVC 542

Query: 180 DVNDNPPVFERSEY 193
             + N    +   +
Sbjct: 543 QCDSNGDCTDVHHH 556

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  114 bits (288), Expect = 5e-29
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 86  IRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLS 143
             +++PE++    P   +V    D   N  +RY +         + +F ++  SG LS++
Sbjct: 5   PPINLPENSRGPFPQE-LVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT 63

Query: 144 KHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPA 203
           K LD E   R  +   A D     + + + +++ V D+NDN P F    +  SV E    
Sbjct: 64  KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123

Query: 204 KSQV 207
            + V
Sbjct: 124 GTYV 127

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  187 bits (477), Expect = 6e-56
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 11/204 (5%)

Query: 7   DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D+ N + Y+I        P+G F ++  TG +     LD E     +LS  A      P+
Sbjct: 35  DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 94

Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRY 118
               ++ + + D+NDN P+F     R SV E    G  +  V A D+D      NG + Y
Sbjct: 95  EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 154

Query: 119 HLASGNFGD--SRLFAVDQTSGHLSLSKH-LDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
            +   +  +    LF +++ +G +SL    LD E    +T+ V ATD     +S     +
Sbjct: 155 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 214

Query: 176 LEVQDVNDNPPVFERSEYFVSVSE 199
           +++ D NDN P+F+   Y   V E
Sbjct: 215 IQITDANDNAPIFDPKTYTALVPE 238

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  180 bits (458), Expect = 4e-53
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 17/205 (8%)

Query: 12  IRYTIHSGDPEGYFTL----DSTTGVIRTAATLDHEVTGVLLLSVQAS----SGSPPLYS 63
             Y I   +  G+F +    +S  G++ TA  LD E+    +L +          P   S
Sbjct: 263 AVYKI-RVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTS 321

Query: 64  YAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASG 123
            A V VT+ED N+  P F     R+ V E  + G  + ++VA+D D     K+ Y + + 
Sbjct: 322 TATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND 380

Query: 124 NFGDSRLFAVDQTSGHLSLSKHLDYETSQ----RHTIVVSATDQGDPPMSSNLTVLLEVQ 179
               +R   V++ +G ++ + +LD E+       +T+++  TD G    +   T++L V 
Sbjct: 381 P---ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL 437

Query: 180 DVNDNPPVFERSEYFVSVSEALPAK 204
           DVNDN PV     + +      P  
Sbjct: 438 DVNDNGPVPSPRVFTMCDQNPEPQV 462

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  169 bits (429), Expect = 6e-49
 Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 18/210 (8%)

Query: 12  IRYTIHSGDPE----GYFTLDSTTGVIRTAAT-LDHEVTGVLLLSVQAS-SGSPPLYSYA 65
           + Y+I   DPE      FT++  TGVI    T LD E      L+VQA+      L    
Sbjct: 152 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEG 211

Query: 66  QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIR-YHLASGN 124
           +  + I D NDNAP F+  T    VPE+  +G  +  +   D D       +  +    N
Sbjct: 212 KAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVN 270

Query: 125 FGDSRLFAV----DQTSGHLSLSKHLDYETSQRHTIVVSATDQ---GDPPMSSNLTVLLE 177
             +   F +    +   G L+ +K LD+E  +++ + ++  +      P  +S  TV + 
Sbjct: 271 --EGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVT 328

Query: 178 VQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
           V+DVN+  P F  +   V VSE L    ++
Sbjct: 329 VEDVNE-APFFVPAVSRVDVSEDLSRGEKI 357

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  152 bits (386), Expect = 8e-43
 Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 16/189 (8%)

Query: 7   DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL----LSVQAS-SGSPPL 61
            Q   + Y I + DP  + T++   G++     LD E   V      + +  +  G    
Sbjct: 368 QQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG 426

Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG-KIRYHL 120
                + + + D NDN P        +              +   D D   N    +  L
Sbjct: 427 TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSL 481

Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + G+  D    A   + G   L           ++I V  +D  + P  + +     V  
Sbjct: 482 SHGS--DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCS 537

Query: 181 VNDNPPVFE 189
                   +
Sbjct: 538 CEGKAIKCQ 546

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  121 bits (305), Expect = 2e-31
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 78  APEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQ 135
             ++    I++S  E          +V    +     K+ Y +      +    +F ++ 
Sbjct: 5   HHDWVIPPIKVSENERGPFPKR---LVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEW 61

Query: 136 TSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFV 195
            +G + +++ LD E   ++ +   A  +   P+   + + + V D NDN P F +  +  
Sbjct: 62  ETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRG 121

Query: 196 SVSEALPAKSQV 207
           SV E +   +QV
Sbjct: 122 SVREGVQPGTQV 133

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  187 bits (476), Expect = 1e-55
 Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 11/207 (5%)

Query: 7   DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D+   + Y+I        P G F ++  TG ++    LD E     +L   A  S    +
Sbjct: 29  DKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAV 88

Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRY 118
               ++ +T+ D+NDN PEF       SV E A  G  +  V A D D      N  I Y
Sbjct: 89  EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148

Query: 119 HLASGN--FGDSRLFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
            + S +       +F V++ +G +S L+  LD E+   +T+VV A D     +S+    +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208

Query: 176 LEVQDVNDNPPVFERSEYFVSVSEALP 202
           + V+D+NDN PVF  S Y   V E   
Sbjct: 209 ITVKDINDNAPVFNPSTYQGQVPENEV 235

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  179 bits (457), Expect = 5e-53
 Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 18/206 (8%)

Query: 12  IRYTIHSGDPEGYFTL--DSTT--GVIRTAATLDHEVTGVLLLSVQAS----SGSPPLYS 63
             YT+   DP+  F +  D TT  G+++TA  LD E     +L V+           + S
Sbjct: 257 AVYTV-VNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPS 315

Query: 64  YAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASG 123
            A V V + D N+ AP F     R+ VPE   +G  + +  AR+ D+  + KI Y +   
Sbjct: 316 TATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRD 374

Query: 124 NFGDSRLFAVDQTSGHLSLSKHLDYETSQR-----HTIVVSATDQGDPPMSSNLTVLLEV 178
               +    ++  +G +     +D E ++      +  ++ ATD G P  +   T+LL +
Sbjct: 375 T---ANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVL 431

Query: 179 QDVNDNPPVFERSEYFVSVSEALPAK 204
            DVNDN P+ E            P  
Sbjct: 432 LDVNDNAPIPEPRNMQFCQRNPQPHI 457

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  176 bits (448), Expect = 1e-51
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 14/210 (6%)

Query: 12  IRYTIHSGDPE----GYFTLDSTTGVIRTA-ATLDHEVTGVLLLSVQAS-SGSPPLYSYA 65
           I YTI S DPE      FT++  TGVI    + LD E      L VQA+      L + A
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205

Query: 66  QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG--KIRYHLASG 123
           +  +T++D NDNAP F  +T +  VPE+  +   + T+   D D+ +    K  Y + + 
Sbjct: 206 KAVITVKDINDNAPVFNPSTYQGQVPENE-VNARIATLKVTDDDAPNTPAWKAVYTVVND 264

Query: 124 NFGDSRLFAVDQT-SGHLSLSKHLDYETSQRHTIVVSATDQG---DPPMSSNLTVLLEVQ 179
                 +     T  G L  +K LD+E  Q++ + V   ++       + S  TV ++V 
Sbjct: 265 PDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVV 324

Query: 180 DVNDNPPVFERSEYFVSVSEALPAKSQVRT 209
           DVN+  P+F  +E  V V E      ++ +
Sbjct: 325 DVNE-APIFMPAERRVEVPEDFGVGQEITS 353

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  159 bits (403), Expect = 4e-45
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 16/194 (8%)

Query: 7   DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL-----LSVQAS-SGSPP 60
                I Y I   D   +  ++  TG I T A +D E    +        + A+  GSP 
Sbjct: 362 FMDQKITYRIWR-DTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPI 420

Query: 61  LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG-KIRYH 119
                 + + + D NDNAP  E   +     +        + +   D D   N       
Sbjct: 421 ATGTGTLLLVLLDVNDNAPIPEPRNM--QFCQRNPQP---HIITILDPDLPPNTSPFTAE 475

Query: 120 LASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQ 179
           L  G    +     +  +    + +         + I +   D  +    + L V   V 
Sbjct: 476 LTHGA-SVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDV--HVC 532

Query: 180 DVNDNPPVFERSEY 193
           D         ++ +
Sbjct: 533 DCEGTVNNCMKAHH 546

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  118 bits (298), Expect = 2e-30
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 88  LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
           +S PE+     P   +V    +     K+ Y +           +F +++ +G L +++ 
Sbjct: 7   ISCPENEKGEFPKN-LVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65

Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS 205
           LD E   ++ +   A       +   + +++ V D NDN P F +  +  SV+E     +
Sbjct: 66  LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125

Query: 206 QV 207
            V
Sbjct: 126 SV 127

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  191 bits (486), Expect = 1e-55
 Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 11/207 (5%)

Query: 7   DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D+ N + Y+I        P+G F ++  TG +     LD E     +LS  A      P+
Sbjct: 184 DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 243

Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRY 118
               ++ + + D+NDN P+F     R SV E    G  +  V A D+D      NG + Y
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303

Query: 119 HLASGN--FGDSRLFAVDQTSGHLSLSKH-LDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
            +   +       LF +++ +G +SL    LD E    +T+ V ATD     +S     +
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 363

Query: 176 LEVQDVNDNPPVFERSEYFVSVSEALP 202
           +++ D NDN P+F+   Y   V E   
Sbjct: 364 IQITDANDNAPIFDPKTYTALVPENEI 390

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  177 bits (451), Expect = 7e-51
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 17/205 (8%)

Query: 12  IRYTIHSGDPEGYFTL----DSTTGVIRTAATLDHEVTGVLLLSVQAS----SGSPPLYS 63
             Y I   +  G+F +    +S  G++ TA  LD E+    +L +          P   S
Sbjct: 412 AVYKI-RVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTS 470

Query: 64  YAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASG 123
            A V VT+ED N+  P F     R+ V E  + G  + ++VA+D D     K+ Y + + 
Sbjct: 471 TATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND 529

Query: 124 NFGDSRLFAVDQTSGHLSLSKHLDYETSQ----RHTIVVSATDQGDPPMSSNLTVLLEVQ 179
               +R   V++ +G ++ + +LD E+       +T+++  TD G    +   T++L V 
Sbjct: 530 P---ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL 586

Query: 180 DVNDNPPVFERSEYFVSVSEALPAK 204
           DVNDN PV     + +      P  
Sbjct: 587 DVNDNGPVPSPRVFTMCDQNPEPQV 611

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  171 bits (434), Expect = 2e-48
 Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 18/212 (8%)

Query: 12  IRYTIHSGDPE----GYFTLDSTTGVIRTAAT-LDHEVTGVLLLSVQAS-SGSPPLYSYA 65
           + Y+I   DPE      FT++  TGVI    T LD E      L+VQA+      L    
Sbjct: 301 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEG 360

Query: 66  QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLA-SGN 124
           +  + I D NDNAP F+  T    VPE+  +G  +  +   D D       +       N
Sbjct: 361 KAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVN 419

Query: 125 FGDSRLFAV----DQTSGHLSLSKHLDYETSQRHTIVVSATDQ---GDPPMSSNLTVLLE 177
             +   F +    +   G L+ +K LD+E  +++ + ++  +      P  +S  TV + 
Sbjct: 420 --EGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVT 477

Query: 178 VQDVNDNPPVFERSEYFVSVSEALPAKSQVRT 209
           V+DVN+  P F  +   V VSE L    ++ +
Sbjct: 478 VEDVNE-APFFVPAVSRVDVSEDLSRGEKIIS 508

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  150 bits (381), Expect = 2e-41
 Identities = 31/201 (15%), Positives = 58/201 (28%), Gaps = 16/201 (7%)

Query: 7   DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL----LSVQAS-SGSPPL 61
            Q   + Y I + DP  + T++   G++     LD E   V      + +  +  G    
Sbjct: 517 QQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG 575

Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG-KIRYHL 120
                + + + D NDN P        +              +   D D   N    +  L
Sbjct: 576 TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSL 630

Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           + G+  D    A   + G   L           ++I V  +D  + P  + +     V  
Sbjct: 631 SHGS--DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCS 686

Query: 181 VNDNPPVFERSEYFVSVSEAL 201
                   +           +
Sbjct: 687 CEGKAIKCQEKLVGGFDLPII 707

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  131 bits (330), Expect = 1e-34
 Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 26/229 (11%)

Query: 1   MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
            K+   D +         GD    F +    G +     +         +S   + G   
Sbjct: 58  GKVNFSDCTTRKHGLYDVGDS--RFRVLPD-GTVLVKRHVKLHKDTKFTISTWDARGIKH 114

Query: 61  LYSY---------------AQVKVTIEDRNDNAPEF-----ESTTIRLSVPESAALGLPL 100
             +                   K+ +    +          +     + V E+     P 
Sbjct: 115 STNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPK 174

Query: 101 YTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKHLDYETSQRHTIVV 158
             +V    +     K+ Y +      +    +F ++  +G + +++ LD E   ++ +  
Sbjct: 175 R-LVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSS 233

Query: 159 SATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
            A  +   P+   + + + V D NDN P F +  +  SV E +   +QV
Sbjct: 234 HAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQV 282

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 92.2 bits (229), Expect = 4e-21
 Identities = 25/168 (14%), Positives = 40/168 (23%), Gaps = 17/168 (10%)

Query: 55  SSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPE-SAALGLPLYTVVARDKDSGDN 113
                 L     V     D +   P F S     SV       G  L  V   D      
Sbjct: 11  VWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCT--TR 68

Query: 114 GKIRYHLASGNF------GDSRLFAVDQTSGHL-SLSKHLDYETSQRHTIVVSATDQGDP 166
               Y +    F             V        ++S            I V++      
Sbjct: 69  KHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSG 128

Query: 167 PMSSNLTVLLEVQDVNDNPPVFERSE-------YFVSVSEALPAKSQV 207
             + + +  L V    +     +R +         VS +E  P   ++
Sbjct: 129 EEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRL 176

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 11  PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKV 69
           P + ++  G    +     + G     +       G   + V  S + + P  +   V  
Sbjct: 625 PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTV--VNA 682

Query: 70  TIEDRNDNAPEFESTTIRLSVPESAALGL 98
           T+      A + +   +         + L
Sbjct: 683 TVCSCEGKAIKCQEKLVGGFDLPIILVIL 711

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 159 SATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE 199
           +A+      +     V     DV+   P F  +EY  SV+ 
Sbjct: 8   NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNR 48

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  176 bits (448), Expect = 8e-54
 Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 26/217 (11%)

Query: 12  IRYTIHSGDPEGYFTL--------DSTTGVIRTAATLDHE------VTGVLLLSVQAS-S 56
             + +     +  F +          T G +R     D+E           ++      +
Sbjct: 22  SVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHN 81

Query: 57  GSPPLYSYAQVKVTIEDRNDNAPEFESTTIRL--SVPESAALGLPLYTVVARDKDSGDNG 114
                    +V + ++D ND  P F +  + +   V  +A    P++T+ ARD D+  N 
Sbjct: 82  AGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN- 140

Query: 115 KIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPP----MSS 170
            I Y +     G    F VD+ SG +       ++    + + V A DQ          S
Sbjct: 141 -IHYFIVRDRTGG--RFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQS 197

Query: 171 NLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
                L +       P F    Y   + E     S +
Sbjct: 198 TPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDI 233

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  167 bits (424), Expect = 3e-50
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 16/188 (8%)

Query: 6   LDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPP---- 60
            D  + I Y I      G F +D  +GV+RT  T   ++    +L V+A           
Sbjct: 135 PDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 194

Query: 61  LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
             S  + +++I      AP+F   +    +PE+      + ++ A+      + +IRY L
Sbjct: 195 FQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKS---FADREIRYTL 250

Query: 121 -ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQR---HTIVVSATDQGDPPMSSNLTVLL 176
            A G    +  F +  TSG + L+K LD+E  ++   ++++V+AT+      S+++ + +
Sbjct: 251 KAQGQ--GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTI 307

Query: 177 EVQDVNDN 184
            V DVNDN
Sbjct: 308 RVTDVNDN 315

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  103 bits (259), Expect = 4e-26
 Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 14/125 (11%)

Query: 97  GLPLYTVVARDKDSGDNGKIRYHLASGNFG------DSRLFAVDQTSGHLSLSKHLDYET 150
             P   +   + D    GK  + L            D   +   +T+G + + K  DYE 
Sbjct: 3   VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEE 62

Query: 151 SQRHT------IVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSE--YFVSVSEALP 202
                      I+ +         + N  V++ V+DVND PP F          V    P
Sbjct: 63  LGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAP 122

Query: 203 AKSQV 207
             + V
Sbjct: 123 PNTPV 127

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 78.6 bits (194), Expect = 5e-17
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 7   DQSN-PIRYTI-HSGDPEGYFTLDSTTGVIRTAATLDHEVT---GVLLLSVQASSGSPPL 61
             ++  IRYT+   G   G F +  T+G+++ A  LD E      V  L V A+  S   
Sbjct: 240 SFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF 299

Query: 62  YSYAQVKVTIEDRNDNA 78
            +   + + + D NDNA
Sbjct: 300 STSVDLTIRVTDVNDNA 316

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  177 bits (452), Expect = 3e-53
 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 17/206 (8%)

Query: 12  IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-----SGSPPLYSYAQ 66
           I Y I      G F +D  +GV+RT  T   ++    +L V+A             S  +
Sbjct: 146 IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPE 205

Query: 67  VKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL-ASGNF 125
            +++I      AP+F   +    +PE+      + ++ A+      + +IRY L A G  
Sbjct: 206 ERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSF---ADREIRYTLKAQGQ- 260

Query: 126 GDSRLFAVDQTSGHLSLSKHLDYETSQR---HTIVVSATDQGDPPMSSNLTVLLEVQDVN 182
             +  F +  TSG + L+K LD+E  ++   ++++V+AT+      S+++ + + V DVN
Sbjct: 261 -GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVN 318

Query: 183 DNPPVFERSEYFV-SVSEALPAKSQV 207
           DN P FE  +Y   +V E +P  + +
Sbjct: 319 DNAPKFELPDYQAHNVDEDIPLGTSI 344

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  166 bits (423), Expect = 4e-49
 Identities = 39/211 (18%), Positives = 69/211 (32%), Gaps = 24/211 (11%)

Query: 12  IRYTIHSGDPEGYFTLD--------STTGVIRTAATLDHEVTGVL------LLSVQAS-S 56
             + +     +  F +          T G +R     D+E  G        ++      +
Sbjct: 27  SVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHN 86

Query: 57  GSPPLYSYAQVKVTIEDRNDNAPEFESTTI--RLSVPESAALGLPLYTVVARDKDSGDNG 114
                    +V + ++D ND  P F +  +  +  V  +A    P++T+ ARD D+  N 
Sbjct: 87  AGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN- 145

Query: 115 KIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTV 174
            I Y +     G    F VD+ SG +       ++    + + V A DQ           
Sbjct: 146 -IHYFIVRDRTGG--RFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQS 202

Query: 175 LLEVQ---DVNDNPPVFERSEYFVSVSEALP 202
             E +         P F    Y   + E   
Sbjct: 203 TPEERLSIVGGKRAPQFYMPSYEAEIPENQK 233

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  161 bits (409), Expect = 5e-47
 Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 13/178 (7%)

Query: 9   SNPIRYTIH-SGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL---LSVQASSGSPPLYSY 64
              IRYT+   G   G F +  T+G+++ A  LD E         L V A+  S    + 
Sbjct: 248 DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS 307

Query: 65  AQVKVTIEDRNDNAPEFESTTIRL-SVPESAALGLPLYTVVARDKDSGDNGKIRYHLASG 123
             + + + D NDNAP+FE    +  +V E   LG  +  V A D DSG N +I Y ++  
Sbjct: 308 VDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDD 367

Query: 124 NFGDSRLFAVDQTSGHLSLSKHLDYETSQ-RHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           +      FAVD   G +  +K LD + +   +  +V+A D+G+PP S   TV +  ++
Sbjct: 368 H------FAVDSN-GIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  108 bits (271), Expect = 4e-27
 Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 90  VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD------SRLFAVDQTSGHLSLS 143
           V  +     P   +   + D    GK  + L      +         +   +T+G + + 
Sbjct: 4   VTRAVR---PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60

Query: 144 KHLDYETSQR------HTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSE--YFV 195
           K  DYE            I+ +         + N  V++ V+DVND PP F         
Sbjct: 61  KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120

Query: 196 SVSEALPAKSQV 207
            V    P  + V
Sbjct: 121 VVQLNAPPNTPV 132

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 12  IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQAS-SGSPPLYSYAQVKV 69
           I Y +       +F +DS  G+I     LD +         V A   G PP    A V+V
Sbjct: 360 IEYLVSDD----HFAVDSN-GIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRV 414

Query: 70  TIEDR 74
             +++
Sbjct: 415 YTKNK 419

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  167 bits (425), Expect = 1e-51
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 12/187 (6%)

Query: 8   QSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSP-PLYSYA 65
               I+Y +        F +D  +G I    TLD E      L  QA    +  PL   +
Sbjct: 32  GDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPS 91

Query: 66  QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLAS 122
           +  V ++D NDN PEF       +VPE + +G  +  V A D D    G++ K+ Y +  
Sbjct: 92  EFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILE 151

Query: 123 GNFGDSRLFAVDQTSGHLSLS-KHLDYETSQRHTIVVSATDQGD--PPMSSNLTVLLEVQ 179
           G       F+V+  +G +  +  ++D E  + + +V+ A D G     +S    V + + 
Sbjct: 152 GQ----PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLT 207

Query: 180 DVNDNPP 186
           D   +  
Sbjct: 208 DDYKDDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  117 bits (294), Expect = 4e-32
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 90  VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYE 149
           + E       L   +  D DSG +G I+Y L+    G   +F +D  SG++  +K LD E
Sbjct: 11  IEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGT--IFVIDDKSGNIHATKTLDRE 67

Query: 150 TSQRHTIVVSATDQGDP-PMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
              ++T++  A D+    P+      +++VQD+NDNPP F    Y  +V E     + V
Sbjct: 68  ERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSV 126

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 12  IRYTIHSGDPEGYFTLDSTTGVIRTAA-TLDHEVTGVLLLSVQAS---SGSPPLYSYAQV 67
           + Y+I  G P  YF++++ TG+IRTA   +D E      + +QA         L    +V
Sbjct: 145 LVYSILEGQP--YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKV 202

Query: 68  KVTIEDRNDNAPE 80
            +T+ D   +  +
Sbjct: 203 TITLTDDYKDDDK 215

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  163 bits (414), Expect = 4e-50
 Identities = 46/180 (25%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 7   DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLYSY 64
             +    Y I        F +    G I     LD E      L+        +  L   
Sbjct: 28  VGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPP 87

Query: 65  AQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLA 121
           ++  + + D NDNAP F       SVPE + LG  +  V A D D      +  + Y + 
Sbjct: 88  SKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQII 147

Query: 122 SGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQ-GDPPMSSNLTVLLEVQD 180
            GN      F VD +    +    LD E+   + I+V A D  G    SS  TV++ + D
Sbjct: 148 KGN----EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  120 bits (304), Expect = 9e-34
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 87  RLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHL 146
           R+ + E     LP    V +   S  N    Y +   +     +F V    G +   + L
Sbjct: 6   RMHIREEIDSPLP--HHVGKLTSSVGNKNAMYIIEGESANT--IFKVQGYDGDIYAFERL 61

Query: 147 DYETSQRHTIVVSATDQ-GDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS 205
           D E    + +     D+  +  +      +++V D+NDN P+F +  +  SV E     +
Sbjct: 62  DREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGT 121

Query: 206 QV 207
            V
Sbjct: 122 SV 123

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  158 bits (401), Expect = 4e-48
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 7   DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D+   + Y+I        P G F ++  TG ++    LD E     +L   A  S    +
Sbjct: 29  DKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAV 88

Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRY 118
               ++ +T+ D+NDN PEF       SV E A  G  +  V A D D      N  I Y
Sbjct: 89  EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148

Query: 119 HLASGN--FGDSRLFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
            + S +       +F V++ +G +S L+  LD E+   +T+VV A D     +S+    +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208

Query: 176 LEVQD 180
           + V+D
Sbjct: 209 ITVKD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  123 bits (310), Expect = 2e-34
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 86  IRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR--LFAVDQTSGHLSLS 143
             +S PE+     P   +V    +     K+ Y +           +F +++ +G L ++
Sbjct: 5   AAISCPENEKGEFPK-NLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63

Query: 144 KHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPA 203
           + LD E   ++ +   A       +   + +++ V D NDN P F +  +  SV+E    
Sbjct: 64  QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123

Query: 204 KSQV 207
            + V
Sbjct: 124 GTSV 127

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  157 bits (399), Expect = 2e-47
 Identities = 32/212 (15%), Positives = 59/212 (27%), Gaps = 34/212 (16%)

Query: 9   SNPIRYTIHS-----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-------- 55
           S  +   ++           +  +   TG++    +LDH     L +  +          
Sbjct: 37  SFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLK 96

Query: 56  -------SGSPPLYSYAQVKVTIEDRNDNAPE----------FESTTIRLSVPESAALGL 98
                              +V     N + P           F  T     + E+   G 
Sbjct: 97  VFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGT 156

Query: 99  PLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVV 158
                +   +       + Y L  G   +   F     S  +S    LD E  +++ +V 
Sbjct: 157 FHQFRLLPVQFLCPQISVAYRLLEG---EGLPFRSAPDSLEVSTRWALDREQREKYELVA 213

Query: 159 SATDQ-GDPPMSSNLTVLLEVQDVNDNPPVFE 189
             T   G       +   + V D +D+ P FE
Sbjct: 214 VCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 91.9 bits (228), Expect = 2e-22
 Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 29/156 (18%)

Query: 81  FESTTIRLSVPESAALGLPLYTVVA--RDKDSGDNGKIRYHLASGNF---GDSRLFAVDQ 135
           F        +    A G PL  V A     +   + ++  HL         ++    + +
Sbjct: 3   FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62

Query: 136 TSGHLSLSKHLDYETSQRHT--------------IVVSATDQGDPPMSSNLTVLLEVQDV 181
            +G L L + LD+ + ++ +              + +S T   +          +     
Sbjct: 63  DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122

Query: 182 NDNPPV----------FERSEYFVSVSEALPAKSQV 207
           N + P           F  +     + E  P  +  
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFH 158

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  155 bits (395), Expect = 3e-47
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 13/187 (6%)

Query: 7   DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D++  +RY++        P G F ++  +G +     LD E+     L   A       +
Sbjct: 29  DKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQV 88

Query: 62  YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYH 119
            +   + + + D NDN PEF       SVPE +  G  + TV A D D  +  NG +RY 
Sbjct: 89  ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148

Query: 120 LASGN--FGDSRLFAVDQTSGHL-SLSKHLDYETSQRHTIVVSATDQGDPP---MSSNLT 173
           + S         +F ++  +G + +++  LD E  Q++T+++ ATD    P   +S+  T
Sbjct: 149 ILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTAT 208

Query: 174 VLLEVQD 180
            ++ V D
Sbjct: 209 AVITVTD 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  122 bits (309), Expect = 2e-34
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 88  LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR--LFAVDQTSGHLSLSKH 145
           +++PE++    P   +V    D   N  +RY +           +F ++  SG LS++K 
Sbjct: 7   INLPENSRGPFPQE-LVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65

Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS 205
           LD E   R  +   A D     + + + +++ V D+NDN P F    +  SV E     +
Sbjct: 66  LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125

Query: 206 QV 207
            V
Sbjct: 126 YV 127

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  153 bits (388), Expect = 4e-46
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 12/180 (6%)

Query: 9   SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLYSYAQ 66
              ++Y +        F ++  TG I+    LD E   V +L  QA       P+   ++
Sbjct: 32  DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESE 91

Query: 67  VKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLASG 123
             + I D NDN P F       +VPE A +G  +  V A D D    G++ K+ Y +  G
Sbjct: 92  FIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG 151

Query: 124 NFGDSRLFAVDQTSGHLSL-SKHLDYETSQRHTIVVSATDQGDP--PMSSNLTVLLEVQD 180
                  F+V+  +G +     ++D E  +++ +V+ A D G     +S   TV + + D
Sbjct: 152 Q----PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  117 bits (296), Expect = 2e-32
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 90  VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYE 149
           + E           +  D+D G +G ++Y L+    GD  LF +++ +G +  +K LD E
Sbjct: 10  LEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGD--LFIINENTGDIQATKRLDRE 66

Query: 150 TSQRHTIVVSATDQGD-PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
               + +   A ++    P+      ++++ D+NDN P+F +  Y  +V E     + V
Sbjct: 67  EKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFV 125

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  149 bits (379), Expect = 9e-45
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 12/181 (6%)

Query: 12  IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
           +       DP+G F ++  TG +    TLD E      L V+ + +    L     ++V 
Sbjct: 38  LTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVI 97

Query: 71  IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYHLASGN--FG 126
           + D+NDN P F        V E +  G  +  + A D D  + DN  +RY++        
Sbjct: 98  VIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKP 157

Query: 127 DSRLFAVDQTSGHLSL---SKHLDYETSQ--RHTIVVSATDQG--DPPMSSNLTVLLEVQ 179
              +F +D   G +        LD ET +  ++ +++ A D    D  ++   T  + + 
Sbjct: 158 SPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVID 217

Query: 180 D 180
           D
Sbjct: 218 D 218

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  122 bits (307), Expect = 5e-34
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 88  LSVPES--AALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKH 145
           + +PE+        +  VV  D+  G   ++       +      F +++ +G +S+++ 
Sbjct: 8   ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQD--PKGTFRINENTGSVSVTRT 65

Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS 205
           LD ET   + + V  TD     +   + + + V D NDN P+F    Y   V E  P  +
Sbjct: 66  LDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGT 125

Query: 206 QV 207
            V
Sbjct: 126 TV 127

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score =  143 bits (362), Expect = 2e-43
 Identities = 42/118 (35%), Positives = 62/118 (52%)

Query: 69  VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDS 128
            +    NDN+P FE +     + E++A G P+  + A D D G NG+I Y   +      
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61

Query: 129 RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPP 186
           RL  +D+TSG LS+   +D E   +    V A D+G PP +   TV+L ++D NDN P
Sbjct: 62  RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 74.4 bits (184), Expect = 4e-17
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 12  IRYTIHSGDPE--GYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVK 68
           I Y   +          LD T+G +     +D E    L  +V A   G PP    A V 
Sbjct: 49  IEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVV 108

Query: 69  VTIEDRNDNAP 79
           + I+D NDN P
Sbjct: 109 LNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 177 EVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
                NDN P FE+S Y   ++E     + +
Sbjct: 3   SGSSGNDNSPRFEKSVYEADLAENSAPGTPI 33

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score =  120 bits (303), Expect = 1e-34
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 69  VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDS 128
            +    NDN P F+   + + +PE+A +G  +  + A D D G N +IRY   +     +
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61

Query: 129 R-LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVN 182
           + LFA++ T+G +++ + LD E +  H + V A+D    P  +  TV + V DVN
Sbjct: 62  KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARA--TVTINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 12  IRYTIHSGDPEG---YFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQV 67
           IRY   +         F L++TTG+I    +LD E T +  ++V AS   S P  + A V
Sbjct: 49  IRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTP--ARATV 106

Query: 68  KVTIEDRN 75
            + + D N
Sbjct: 107 TINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 177 EVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
                NDN PVF+  +  V + E  P  + V
Sbjct: 3   SGSSGNDNRPVFKEGQVEVHIPENAPVGTSV 33

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score =  111 bits (280), Expect = 3e-31
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 78  APEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQ 135
             ++    I  ++PE++    P   +V        N  +RY +         + +F ++ 
Sbjct: 1   GSDWVIPPI--NLPENSRGPFPQ-ELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINP 57

Query: 136 TSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF 188
            SG LS++K LD E   R  +   A D     + + + +++ V D+NDN P F
Sbjct: 58  ISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 81.2 bits (201), Expect = 9e-20
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 7   DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D++  +RY++        P G F ++  +G +     LD E+     L   A       +
Sbjct: 31  DKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQV 90

Query: 62  YSYAQVKVTIEDRNDNAPEF 81
            +   + + + D NDN PEF
Sbjct: 91  ENPIDIVINVIDMNDNRPEF 110

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score =  102 bits (255), Expect = 2e-27
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 84  TTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR--LFAVDQTSGHLS 141
             + L   E  +   P+  + + D       KI Y        +    +F  ++ +G L+
Sbjct: 15  APVALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELN 73

Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
           ++  LD E +    +   A D     +   L + ++V D+NDN PVF +
Sbjct: 74  VTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 80.1 bits (198), Expect = 4e-19
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 7   DQSNPIRYTIH----SGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           ++   I Y       +  P G F  +  TG +   + LD E T   LL+  A  +    +
Sbjct: 41  ERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNV 100

Query: 62  YSYAQVKVTIEDRNDNAPEFE 82
               ++++ + D NDN P F 
Sbjct: 101 EKPLELRIKVLDINDNEPVFT 121

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 88.6 bits (220), Expect = 1e-22
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 78  APEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR--LFAVDQ 135
            P        +S PE+     P   +V    +    GK+ Y +           +F +++
Sbjct: 1   GPLGSWVIPPISCPENEKGPFP-KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59

Query: 136 TSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
            +G L +++ LD E    +T+   A       +   + +L+ V D
Sbjct: 60  ETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 59.7 bits (145), Expect = 8e-12
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 7   DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D+   + Y+I        P G F ++  TG ++    LD E      L   A  S    +
Sbjct: 33  DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAV 92

Query: 62  YSYAQVKVTIED 73
               ++ +T+ D
Sbjct: 93  EDPMEILITVTD 104

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 87.4 bits (217), Expect = 4e-22
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 88  LSVPESAALGLP--LYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKH 145
           +S+PE+  +  P  +  VV  D+  G   K+             +F +++ SG +S++K 
Sbjct: 7   ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKG--IFKINENSGEVSVTKA 64

Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           LD E    + + V  TD+    +   + + + V D
Sbjct: 65  LDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 60.8 bits (148), Expect = 3e-12
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
          +       +P+G F ++  +G +     LD E      L V+ +      +     +++ 
Sbjct: 37 LYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEIL 96

Query: 71 IED 73
          + D
Sbjct: 97 VID 99

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 86.3 bits (214), Expect = 1e-21
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 88  LSVPE--SAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKH 145
           + +PE         +  VV  D+  G   ++       +      F +++ +G +S+++ 
Sbjct: 8   ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKG--TFRINENTGSVSVTRT 65

Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           LD ET   + + V  TD     +   + + + V D
Sbjct: 66  LDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 12  IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
           +       DP+G F ++  TG +    TLD E      L V+ + +    L     ++V 
Sbjct: 38  LTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVI 97

Query: 71  IED 73
           + D
Sbjct: 98  VID 100

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 79.4 bits (196), Expect = 4e-19
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 88  LSVPESAALGLPLY--TVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKH 145
           + +PE+     P     V+  +   G   ++       +     +F +++ SG +S+++ 
Sbjct: 7   ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQD--PKGIFRINEISGDVSVTRP 64

Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           LD E    + + V  TD     +   + + + V D
Sbjct: 65  LDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
          +       DP+G F ++  +G +     LD E      L V+ +      +    ++ ++
Sbjct: 37 LSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDIS 96

Query: 71 IED 73
          + D
Sbjct: 97 VID 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 88  LSVPESAALGLPLY-TVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHL 146
             V E      PLY   +  D D G +G I+Y L+    G   +F +D T+G +   + L
Sbjct: 8   FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGI--VFTIDDTTGDIHAIQRL 64

Query: 147 DYETSQRHTIVVSATDQG-DPPMSSNLTVLLEVQD 180
           D E   ++T+   A D+    PM      ++++QD
Sbjct: 65  DREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 59.7 bits (145), Expect = 8e-12
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 6  LDQSNP-IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLY 62
          +D+ +  I+Y +        FT+D TTG I     LD E      L  QA       P+ 
Sbjct: 29 MDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPME 88

Query: 63 SYAQVKVTIED 73
            ++  + I+D
Sbjct: 89 PESEFIIKIQD 99

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 73.2 bits (180), Expect = 7e-17
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 88  LSVPESAALGLPLY-TVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHL 146
           + V E  +   P+    +  D D G + KI+Y L+    G   +F ++  +G +   K L
Sbjct: 7   MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGT--IFQINDITGDIHAIKRL 63

Query: 147 DYETSQRHTIVVSATDQ-GDPPMSSNLTVLLEVQD 180
           D E    +T+   A D   + P+      +++VQD
Sbjct: 64  DREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 60.1 bits (146), Expect = 4e-12
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 7  DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLYSY 64
            S  I+Y +        F ++  TG I     LD E      L+ QA     + PL   
Sbjct: 30 PGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPP 89

Query: 65 AQVKVTIED 73
          ++  + ++D
Sbjct: 90 SEFIIKVQD 98

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 34/127 (26%)

Query: 83  STTIRLSVPESAALGLPLYTVVAR-DKDSGDNGKIRYHLASGNF-----GDSRLFAVDQT 136
           S TI  SV E    G    ++V    KD G + +    L +        G+ +L  ++Q 
Sbjct: 10  SATITYSVLEETDRG----SLVGNLAKDLGLSLR---ELITRGAQILSKGNKQLLQLEQK 62

Query: 137 SGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLE-----------VQDVNDNP 185
           SG+L L + LD E     T           P   +  VLL+           +QDVND+ 
Sbjct: 63  SGNLLLKEKLDREELCGST----------NPCILHFQVLLKSPVQFIQGEIQLQDVNDHA 112

Query: 186 PVFERSE 192
           P F   E
Sbjct: 113 PEFMEDE 119

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 16  IHSGDPEGYFTLDSTTGVIRTAATLDHEV----TGVLLLSVQASSGSPP-LYSYAQVKVT 70
           I S   +    L+  +G +     LD E     T   +L  Q    SP       Q ++ 
Sbjct: 48  ILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSPVQFI---QGEIQ 104

Query: 71  IEDRNDNAPEFESTTIRLSV 90
           ++D ND+APEF       S 
Sbjct: 105 LQDVNDHAPEFMEDESGPSS 124

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Length = 103

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 34/119 (28%)

Query: 83  STTIRLSVPESAALGLPLYTVVAR-DKDSGDNGKIRYHLASGNF-----GDSRLFAVDQT 136
           ++ I  S+PE A  G    T V R  +D G        L    F         L  V+  
Sbjct: 2   NSQIHYSIPEEAKHG----TFVGRIAQDLGLELT---ELVPRLFRVASKDRGDLLEVNLQ 54

Query: 137 SGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLE-----------VQDVNDN 184
           +G L ++  +D E     +             S +L V+++           V+D+NDN
Sbjct: 55  NGILFVNSRIDREELCGRS----------AECSIHLEVIVDRPLQVFHVEVEVRDINDN 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	99.97
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.97
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.97
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	99.96
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	99.96
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	99.96
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	99.95
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	99.95
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	99.95
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	99.95
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.94
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.91
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.9
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.87
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.81
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.79
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.78
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.76
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.75
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.74
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.73
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.67
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.66
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.6
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.57
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.52
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.45
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.45
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.4
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.4
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.38
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.37
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.36
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.09
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	92.78
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	90.35
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	90.23
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	89.49
2kpn_A	103	Bacillolysin; solution structure, BIG_3 domain, PF	82.39
2yrl_A	102	KIAA1837 protein; PKD domain, NPPSFA, national pro	81.74
3ead_A	137	Na/Ca exchange protein; CBD1, calcium regulation,	80.4

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=2.6e-47  Score=341.50  Aligned_cols=262  Identities=24%  Similarity=0.348  Sum_probs=223.3

Q ss_pred             EEecC-CCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCC--CCceeEEEEEEEEEecCCCCCe
Q psy11062          4 LLLDQ-SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS--PPLYSYAQVKVTIEDRNDNAPE   80 (281)
Q Consensus         4 ~d~d~-~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~--~~~~~~~~v~i~V~dvNd~~P~   80 (281)
                      +|.|. ++.++|+|.++...++|+|++.+|.|++.++||||+...|.|.|.|+|+.  +++++++.+.|.|.|+|||+|.
T Consensus        26 ~D~D~g~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~  105 (322)
T 2a62_A           26 TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPE  105 (322)
T ss_dssp             CCCCCSSCCCEEEEEETTBTTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECTTTCSEEEEEEEECEECCCCSCSCBC
T ss_pred             EcCCCCCCEEEEEEECCCCCCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEECCCCCcccceEEEEEEEEecCCCCCc
Confidence            45554 47899999876556789999999999999999999999999999999754  3467788999999999999999


Q ss_pred             eccCcEEEEEeCCCCCCceEEEEEEEeCCC---CCCceEEEEEeeCCCCCceeeEEeCceeEEEEc-eecCccCcceEEE
Q psy11062         81 FESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLS-KHLDYETSQRHTI  156 (281)
Q Consensus        81 f~~~~~~~~v~En~~~gt~v~~v~a~D~D~---g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~y~l  156 (281)
                      |....|.+.|+|+.++|+.++++.|+|+|.   |.|+.++|+|..+    ...|.|++.+|.|++. ++||||....|.|
T Consensus       106 F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~----~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l  181 (322)
T 2a62_A          106 FLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG----QPYFSIEPETAIIKTALPNMDREAKEEYLV  181 (322)
T ss_dssp             CSSSEEEEEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEEC----TTTEEECTTTCCEEECSSCCCGGGCSEEEE
T ss_pred             cCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccC----CCCEEEecCCCEEEecccCCCcccCCeEEE
Confidence            999999999999999999999999999995   7889999999985    3589999999999998 8999999999999


Q ss_pred             EEEEEECCCCC--CeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecCccccEEEEEeecCC
Q psy11062        157 VVSATDQGDPP--MSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLMT  234 (281)
Q Consensus       157 ~V~a~D~~~p~--~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g~~~~~~~~~~~~~~  234 (281)
                      .|+|+|++.|+  ++++++|+|.|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+  |.|.|.|+.+.|++.....
T Consensus       182 ~V~a~D~g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~--D~D~g~n~~i~Y~i~~g~~  259 (322)
T 2a62_A          182 VIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKAN--DQDIGENAQSSYDIIDGDG  259 (322)
T ss_dssp             EEEEEESCSSSSCCBCCEEEEEEECCCCCCCCCCSCSEEEEEECSCCSSCCEEEEEECC--CSSCGGGTCCEEEEC---C
T ss_pred             EEEEEECCCCCCCceeEEEEEEEEEecCCCCCeecCCCceeEeECCCCCCcEEEEEEEE--eCCCCCCceEEEEEECCCC
Confidence            99999999874  8899999999999999999999999999999999999999999999  9999999999999876433


Q ss_pred             h--hhhh-----ccCCCCCCCCcceEEEEEEEEEEecCcceeee
Q psy11062        235 H--STLK-----SELNSPLGSNSFQLSILWYSIFLRTNTMQIYR  271 (281)
Q Consensus       235 ~--~~l~-----~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~  271 (281)
                      .  +.++     ..|...+.+..-.-....|+|.|++.++-..+
T Consensus       260 ~~~F~I~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~g~pp  303 (322)
T 2a62_A          260 TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDP  303 (322)
T ss_dssp             CSSBCCBCCTTTSEEEEEBCSCCCCSSCCEEEEEEEEECCCSSC
T ss_pred             CCcEEEeccCCCceEEEEECCcCCcccCCeEEEEEEEEECCCCC
Confidence            3  3333     12333333333223456799999987765544

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=1.7e-43  Score=337.80  Aligned_cols=224  Identities=27%  Similarity=0.379  Sum_probs=205.1

Q ss_pred             EecCCCcEEEEEEeCC----CCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCC-CCceeEEEEEEEEEecCCCCC
Q psy11062          5 LLDQSNPIRYTIHSGD----PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS-PPLYSYAQVKVTIEDRNDNAP   79 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g~----~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~-~~~~~~~~v~i~V~dvNd~~P   79 (281)
                      |.|.++.|.|+|.+++    +.++|.|++.+|.|+++++||||+...|.|.|.|.|+. ++.++++.|.|.|.|+|||+|
T Consensus        33 d~d~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~~~~~~~~~~~v~I~V~DvNDn~P  112 (546)
T 1l3w_A           33 NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRP  112 (546)
T ss_dssp             SGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCC
T ss_pred             CCCCCceEEEEEECCCCCCCCCceEEEeCCccEEEECCcCCcccCceEEEEEEEEeCCCCcccceEEEEEEEEecccCcC
Confidence            5667899999998754    34689999999999999999999999999999999754 456778999999999999999


Q ss_pred             eeccCcEEEEEeCCCCCCceEEEEEEEeCCCC---CCceEEEEEeeCCCC--CceeeEEeCceeEEEEc-eecCccCcce
Q psy11062         80 EFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLS-KHLDYETSQR  153 (281)
Q Consensus        80 ~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g---~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~~-~~LD~E~~~~  153 (281)
                      .|....|.+.|+|++++|+.++++.|+|+|.|   .|+.++|+|..+.+.  ....|.|++.+|.|++. ++||||....
T Consensus       113 ~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~  192 (546)
T 1l3w_A          113 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE  192 (546)
T ss_dssp             EESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCE
T ss_pred             EecCceeEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCce
Confidence            99999999999999999999999999999998   689999999975421  35799999999999985 7999999999


Q ss_pred             EEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEee--cCccccEEEEEee
Q psy11062        154 HTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLV--EGQCSLVCWSTLR  231 (281)
Q Consensus       154 y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d--~g~~~~~~~~~~~  231 (281)
                      |.|.|+|+|++.|++++++.|+|.|.|+|||+|+|....|.+.|+|+ ++|+.|+++.|+  |.|  .|.++.++|++..
T Consensus       193 y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~--D~D~~~g~n~~v~y~i~~  269 (546)
T 1l3w_A          193 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVT--DLDMPGTPAWQAVYKIRV  269 (546)
T ss_dssp             EEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBC--CCSCTTSTTSCEECCBSC
T ss_pred             EEEEEEEEECCCCCcceEEEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEE--eCCCCCCCCcEEEEEEEe
Confidence            99999999999888999999999999999999999999999999999 999999999999  888  7889999998865

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=3e-43  Score=336.36  Aligned_cols=224  Identities=27%  Similarity=0.408  Sum_probs=203.4

Q ss_pred             EecCCCcEEEEEEeC----CCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC-CCCceeEEEEEEEEEecCCCCC
Q psy11062          5 LLDQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKVTIEDRNDNAP   79 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g----~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i~V~dvNd~~P   79 (281)
                      |.|.++.|+|+|.++    ++.++|.|++.+|.|++.++||||+.+.|.|.|.|.|+ .++.++++.|.|.|.|+|||+|
T Consensus        27 d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~a~d~~~~~~~~~~~v~I~V~DvNDn~P  106 (550)
T 3q2v_A           27 NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP  106 (550)
T ss_dssp             GGGGTSCEEEEEESBTTTBSSCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCC
T ss_pred             CCCCCceEEEEEECCCCCCCCCceEEEeCCceEEEECCccCcccCCeeEEEEEEEeCCCCcccceEEEEEEEEecCCCCC
Confidence            677889999999862    34579999999999999999999999999999999975 4456678899999999999999


Q ss_pred             eeccCcEEEEEeCCCCCCceEEEEEEEeCCCC---CCceEEEEEeeCCCC--CceeeEEeCceeEEEE-ceecCccCcce
Q psy11062         80 EFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRYHLASGNFG--DSRLFAVDQTSGHLSL-SKHLDYETSQR  153 (281)
Q Consensus        80 ~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g---~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~-~~~LD~E~~~~  153 (281)
                      .|.+..|.+.|+|++++|+.++++.|+|+|.|   .|+.++|+|..+++.  ....|.|++.+|.|.+ .++||||....
T Consensus       107 ~F~~~~y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~  186 (550)
T 3q2v_A          107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT  186 (550)
T ss_dssp             CBSCSEEEEEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSE
T ss_pred             ccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcE
Confidence            99999999999999999999999999999998   789999999875432  3578999999999987 57999999999


Q ss_pred             EEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecCcccc--EEEEEee
Q psy11062        154 HTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSL--VCWSTLR  231 (281)
Q Consensus       154 y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g~~~~--~~~~~~~  231 (281)
                      |.|.|+|+|++.+++++++.|+|.|.|+|||+|+|.+..|.+.|+|+ ++|+.|+++.|+  |.|.|.++.  +.|++..
T Consensus       187 y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~--D~D~~~n~~~~~~ysi~~  263 (550)
T 3q2v_A          187 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVT--DDDAPNTPAWKAVYTVVN  263 (550)
T ss_dssp             EEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEE--CCSCTTSTTTCEEEEESS
T ss_pred             EEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEE--ECCCCCCCcEEEEEEEEe
Confidence            99999999998889999999999999999999999999999999999 999999999999  999988875  4587764

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=2.1e-42  Score=331.09  Aligned_cols=225  Identities=25%  Similarity=0.353  Sum_probs=199.7

Q ss_pred             EecCCCcEEEEEEeCCC----CceEEEECCccEEEECcCCCceeccEEEEEEEEEeCC-CCceeEEEEEEEEEecCCCCC
Q psy11062          5 LLDQSNPIRYTIHSGDP----EGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS-PPLYSYAQVKVTIEDRNDNAP   79 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g~~----~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~-~~~~~~~~v~i~V~dvNd~~P   79 (281)
                      |.|.|+.|+|+|.++..    .++|.|++.+|.|++.++||||+.+.|.|.|.|.|+. +..++++.|.|.|.|+|||+|
T Consensus        27 D~~~n~~i~Ysi~~~~~~~~~~~~F~id~~tG~l~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P  106 (559)
T 3q2w_A           27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP  106 (559)
T ss_dssp             GGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCEEEEEEEEEEEEECCCCCCC
T ss_pred             CCCCCcEEEEEEECCCCCCCCCceEEEeCCceEEEECCccCCCCCceEEEEEEEEECCCCccceeEEEEEEEEeCCCCCC
Confidence            45678899999986432    3799999999999999999999999999999999754 456788999999999999999


Q ss_pred             eeccCcEEEEEeCCCCCCceEEEEEEEeCCCC--CCceEEEEEeeCCCC--CceeeEEeCceeEEEEce-ecCccCcceE
Q psy11062         80 EFESTTIRLSVPESAALGLPLYTVVARDKDSG--DNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLSK-HLDYETSQRH  154 (281)
Q Consensus        80 ~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g--~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~~~-~LD~E~~~~y  154 (281)
                      .|.+..|.+.|+|++++|+.++++.|+|+|.|  .|+.++|+|..+.+.  ....|.|++.+|.|++.+ +||||....|
T Consensus       107 ~F~~~~y~~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y  186 (559)
T 3q2w_A          107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY  186 (559)
T ss_dssp             EESCSEEEEEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEE
T ss_pred             ccCCCeeEEEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEE
Confidence            99999999999999999999999999999987  689999999865321  126899999999999988 9999999999


Q ss_pred             EEEEEEEECCC---CCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecCc--cccEEEEE
Q psy11062        155 TIVVSATDQGD---PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQ--CSLVCWST  229 (281)
Q Consensus       155 ~l~V~a~D~~~---p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g~--~~~~~~~~  229 (281)
                      .|.|+|+|+++   ++++++++|+|.|.|+|||+|+|....|.+.|+|+. +|+.|+++.|+  |.|.|.  ++.+.|++
T Consensus       187 ~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~--D~D~~~~~n~~~~y~i  263 (559)
T 3q2w_A          187 TLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVT--DKDQPHTPAWNAAYRI  263 (559)
T ss_dssp             EEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEEEEEEE--CCSCTTSTTTSBCCEE
T ss_pred             EEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCccccccceeEecCCC-CCcEEEEEEEE--cCCCCCCCceeEEEEE
Confidence            99999999854   358999999999999999999999999999999997 89999999999  888775  55777776


Q ss_pred             eec
Q psy11062        230 LRL  232 (281)
Q Consensus       230 ~~~  232 (281)
                      ...
T Consensus       264 ~~g  266 (559)
T 3q2w_A          264 SGG  266 (559)
T ss_dssp             EES
T ss_pred             ecC
Confidence            543

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=8.9e-42  Score=316.24  Aligned_cols=257  Identities=22%  Similarity=0.315  Sum_probs=218.2

Q ss_pred             CEEEEecCCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCCC-----CceeEEEEEEEEEecC
Q psy11062          1 MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSP-----PLYSYAQVKVTIEDRN   75 (281)
Q Consensus         1 ~~~~d~d~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~~-----~~~~~~~v~i~V~dvN   75 (281)
                      ++|+|.|.+..+.|+|..++..++|.|++.+|.|++.+.||+|....|.|+|.|.|+.+     ++++++.++|.|.| |
T Consensus       135 v~A~D~D~g~n~~y~i~~~~~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-n  213 (419)
T 3ubh_A          135 LQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-G  213 (419)
T ss_dssp             CCEECSSTTCCEEEEEEEESSSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-S
T ss_pred             EEEECCCCCceeEEEEEeCCCCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-C
Confidence            56888888888999999888888999999999999999999999999999999997532     45778889999999 9


Q ss_pred             CCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcc---
Q psy11062         76 DNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQ---  152 (281)
Q Consensus        76 d~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~---  152 (281)
                      ||+|.|.+..|.+.|+||.++|+.++++.|+|+|   ++.++|+|..+. +...+|.|++.+|.|++.++||||...   
T Consensus       214 dn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~~~-~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~  289 (419)
T 3ubh_A          214 KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQG-QGAGTFNIGPTSGIVKLAKELDFEDLRQPH  289 (419)
T ss_dssp             CCCCEESSSCEEEEEETTCCTTCEEEECCEECSS---CCCCEEEEEESS-SCCSSEEECTTTCEEEECSCCCTTCTTSCS
T ss_pred             CCCCceecCeeEEEecCCCCCCcEEEEEEEecCC---CCceEEEEecCC-CCCCcEEEECCCCEEEECcccCcccccccc
Confidence            9999999999999999999999999999999997   678999998421 346899999999999999999999865   


Q ss_pred             eEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEE-EEeCCCCCCcEEEEEEeeEEEeecCccccEEEEEee
Q psy11062        153 RHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFV-SVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLR  231 (281)
Q Consensus       153 ~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~-~v~E~~~~gt~v~~v~A~~yd~d~g~~~~~~~~~~~  231 (281)
                      .|.|.|+|+|.+ +++++++.|+|+|.|+|||+|.|..+.|.. .|+|+.++|+.|++|.|+  |.|.|.|+.++|++..
T Consensus       290 ~y~l~V~a~dd~-~~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v~A~--D~D~g~n~~v~Y~i~~  366 (419)
T 3ubh_A          290 VYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAM--DSDSGSNAEIEYLVSD  366 (419)
T ss_dssp             EEEEEEEEECTT-TSCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEEECCEE--CSSCGGGGCEEEEESC
T ss_pred             EEEEEEEEEeCC-CCcEEEEEEEEEEEccCCCCCcccCCcceeEEecCCCCCCCEEEEEEEE--eCCCCCCCEEEEEEcC
Confidence            799999999754 357899999999999999999999999987 799999999999999999  9999999999998854


Q ss_pred             cCChhhhhccCCCCCCCCcceEE-EEEEEEEEecCcc
Q psy11062        232 LMTHSTLKSELNSPLGSNSFQLS-ILWYSIFLRTNTM  267 (281)
Q Consensus       232 ~~~~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~  267 (281)
                        +.+.++..|...+....-.-. ...|+|.|+..++
T Consensus       367 --~~F~Id~~G~i~~~~~ld~E~~~~~y~l~V~a~D~  401 (419)
T 3ubh_A          367 --DHFAVDSNGIIVNNKQLDADNNNAYYEFIVTAKDK  401 (419)
T ss_dssp             --TTEEECTTCEEEECSCSSSSCTTCEEEEEEEEEEC
T ss_pred             --CcEEECCCeEEEECcccCcccCCceEEEEEEEEEC
Confidence              345554344332222222222 3568888876664

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=5.4e-41  Score=300.14  Aligned_cols=253  Identities=17%  Similarity=0.212  Sum_probs=199.5

Q ss_pred             EEEEec--CCCcEEEEEEeCCCC---------ceEEEECCccEEEECcCCCceec-----cEEEEEEEEEeCCC--Ccee
Q psy11062          2 KILLLD--QSNPIRYTIHSGDPE---------GYFTLDSTTGVIRTAATLDHEVT-----GVLLLSVQASSGSP--PLYS   63 (281)
Q Consensus         2 ~~~d~d--~~~~l~Y~i~~g~~~---------~~F~Id~~~G~i~~~~~LD~E~~-----~~~~l~v~a~dg~~--~~~~   63 (281)
                      +|+|.|  .++.+.|+|..+++.         .+|.|++ +|.|+++++||||..     ..|.|.|.|.++..  ++++
T Consensus        10 ~atd~D~g~ng~v~y~l~~~~~~~~f~i~~~~~~F~i~~-tG~l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~~~~s~   88 (316)
T 3ubf_A           10 EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVET-NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTD   88 (316)
T ss_dssp             EEESGGGCSTTCEEEECCCSSTTCEEEESSCCSSEEECT-TSEEEESSCCCGGGSCTTCEEEEEEEEEC-------CCCE
T ss_pred             EEEecCCCCCceEEEEEEcCCCcceEEEeCCCCeEEECC-CeEEEECCccChhhcccccceEEEEEEEEcCCCCCCcccc
Confidence            445553  467788888765543         4577777 999999999999994     46888888887653  4688


Q ss_pred             EEEEEEEEEecCCCCCeeccCc--EEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEE
Q psy11062         64 YAQVKVTIEDRNDNAPEFESTT--IRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLS  141 (281)
Q Consensus        64 ~~~v~i~V~dvNd~~P~f~~~~--~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~  141 (281)
                      ++.|+|.|.|+|||+|.|....  |.+.|+|+.++|+.++++.|+|+|.|.+  ++|+|..++  ..+.|.|++.+|.|+
T Consensus        89 ~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n--i~Y~i~~~~--~~~~F~Id~~tG~i~  164 (316)
T 3ubf_A           89 NQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR--TGGRFEVDERSGVVR  164 (316)
T ss_dssp             EEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEEE--SSSCEEECTTTCEEE
T ss_pred             eEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEEEEEECCCCCCc--eEEEEEeCC--CCCEEEEECCccEEE
Confidence            9999999999999999999876  8999999999999999999999999877  999998653  467999999999999


Q ss_pred             EceecCccCcceEEEEEEEEECCC----CCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEe
Q psy11062        142 LSKHLDYETSQRHTIVVSATDQGD----PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVL  217 (281)
Q Consensus       142 ~~~~LD~E~~~~y~l~V~a~D~~~----p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~  217 (281)
                      +.++||||....|.|.|+|+|+++    |++++++.|+|.|.| |||+|.|.+..|.+.|+|+.++|+.|+++.|+  |.
T Consensus       165 ~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~--D~  241 (316)
T 3ubf_A          165 TRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAK--SF  241 (316)
T ss_dssp             ECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEEECCEE--CT
T ss_pred             ECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEEEEEEE--eC
Confidence            999999999999999999999985    457888999999999 99999999999999999999999999999998  55


Q ss_pred             ecCccccEEEEEee-c--CChhhhh-ccCCCCCCCCcceEEE---EEEEEEEecC
Q psy11062        218 VEGQCSLVCWSTLR-L--MTHSTLK-SELNSPLGSNSFQLSI---LWYSIFLRTN  265 (281)
Q Consensus       218 d~g~~~~~~~~~~~-~--~~~~~l~-~~~~~~~~~~~~~~~~---~~y~~~~~~~  265 (281)
                      |   ++.++|++.. .  ...+.++ ..|...+....-.-..   ..|+|.|++.
T Consensus       242 D---n~~i~Y~i~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~A~  293 (316)
T 3ubf_A          242 A---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTAT  293 (316)
T ss_dssp             T---CCCEEEEEEEESSCTTTEEECTTTCEEEECSCCCSSCTTSCSEEEEEEEEE
T ss_pred             C---CCEEEEEEEcCCCCCCeEEEECCeEEEEECCcCCccccCCCceEEEEEEEE
Confidence            3   6889998862 2  2333343 2333322222211222   4688888765

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=1.1e-41  Score=340.18  Aligned_cols=224  Identities=27%  Similarity=0.379  Sum_probs=204.6

Q ss_pred             EecCCCcEEEEEEeCC----CCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCC-CCceeEEEEEEEEEecCCCCC
Q psy11062          5 LLDQSNPIRYTIHSGD----PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS-PPLYSYAQVKVTIEDRNDNAP   79 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g~----~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~-~~~~~~~~v~i~V~dvNd~~P   79 (281)
                      |.|.++.++|+|.++.    +.++|.|++.+|.|++.++||||+...|.|.|.|.|+. ++.++++.|+|.|.|+|||+|
T Consensus       182 d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~g~~~~~~~~~v~I~V~DvNDn~P  261 (880)
T 1q55_A          182 NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRP  261 (880)
T ss_dssp             SGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCC
T ss_pred             CCCCCceEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccccCccEEEEEEEECCCCceeeeEEEEEEEEecCCCCC
Confidence            4456789999998653    34689999999999999999999999999999999754 456788999999999999999


Q ss_pred             eeccCcEEEEEeCCCCCCceEEEEEEEeCCCC---CCceEEEEEeeCCCC--CceeeEEeCceeEEEEc-eecCccCcce
Q psy11062         80 EFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLS-KHLDYETSQR  153 (281)
Q Consensus        80 ~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g---~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~~-~~LD~E~~~~  153 (281)
                      .|.+..|.+.|+|++++|+.++++.|+|+|.|   .|+.++|+|..+.+.  ....|.|++.+|.|++. ++||||....
T Consensus       262 ~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~~~~  341 (880)
T 1q55_A          262 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE  341 (880)
T ss_dssp             EESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCE
T ss_pred             CccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHHcce
Confidence            99999999999999999999999999999998   689999999976421  45799999999999985 7899999999


Q ss_pred             EEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEee--cCccccEEEEEee
Q psy11062        154 HTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLV--EGQCSLVCWSTLR  231 (281)
Q Consensus       154 y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d--~g~~~~~~~~~~~  231 (281)
                      |.|.|+|+|++.|+++++++|+|+|.|+|||+|+|....|.+.|+|+ ++|+.|+++.|+  |.|  .|.|+.+.|++..
T Consensus       342 y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~--D~D~~~g~n~~v~Ysi~~  418 (880)
T 1q55_A          342 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVT--DLDMPGTPAWQAVYKIRV  418 (880)
T ss_dssp             EEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBC--CCSCTTSTTSCEECCBSC
T ss_pred             eEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEE--CCCCCCCCCceEEEEEec
Confidence            99999999999888999999999999999999999999999999999 999999999999  888  7889999998865

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=1.3e-40  Score=318.25  Aligned_cols=224  Identities=29%  Similarity=0.377  Sum_probs=203.5

Q ss_pred             CEEEEecC-----CCcEEEEEEeCCC----CceEEEECCccEEEE-CcCCCceeccEEEEEEEEEeC-CCCceeEEEEEE
Q psy11062          1 MKILLLDQ-----SNPIRYTIHSGDP----EGYFTLDSTTGVIRT-AATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKV   69 (281)
Q Consensus         1 ~~~~d~d~-----~~~l~Y~i~~g~~----~~~F~Id~~~G~i~~-~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i   69 (281)
                      ++|+|.|.     |+.+.|+|.++++    .++|+|++.+|.|++ .++||||+...|.|.|.|+|+ .+++++++.|+|
T Consensus       130 v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I  209 (550)
T 3q2v_A          130 VSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVI  209 (550)
T ss_dssp             CCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTSCCCEEEEEE
T ss_pred             EEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCCeeEEEEEEE
Confidence            35677775     4789999997653    468999999999998 589999999999999999974 567889999999


Q ss_pred             EEEecCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCc--eEEEEEeeCCCCCceeeEEe----CceeEEEEc
Q psy11062         70 TIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG--KIRYHLASGNFGDSRLFAVD----QTSGHLSLS  143 (281)
Q Consensus        70 ~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~--~i~y~l~~~~~~~~~~F~id----~~tG~i~~~  143 (281)
                      .|.|+|||+|.|....|.+.|+|+ ++|+.++++.|+|+|.+.++  .++|+|..   ...+.|.|+    +.+|.|++.
T Consensus       210 ~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~---~~~~~F~i~~d~~~~tG~i~~~  285 (550)
T 3q2v_A          210 TVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVN---DPDQQFVVVTDPTTNDGILKTA  285 (550)
T ss_dssp             EEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTCEEEEESS---CSSCCEEEEECTTTCCEEEEES
T ss_pred             EecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEe---CCCCcEEEEecCCCccEEEEec
Confidence            999999999999999999999999 99999999999999998877  46699987   357889998    689999999


Q ss_pred             eecCccCcceEEEEEEEEECCC---CCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecC
Q psy11062        144 KHLDYETSQRHTIVVSATDQGD---PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEG  220 (281)
Q Consensus       144 ~~LD~E~~~~y~l~V~a~D~~~---p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g  220 (281)
                      ++||||....|.|.|+|+|++.   +.+++++.|+|.|+|+|| +|.|....|.+.|+|+.++|+.|+++.|+  |.|.|
T Consensus       286 ~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~E~~~~gt~v~~v~A~--D~D~g  362 (550)
T 3q2v_A          286 KGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAR--EPDTF  362 (550)
T ss_dssp             SCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEECCCC-CCEESSSSCEEEEETTCCSSCEEEECCEE--CCCCS
T ss_pred             ccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEecCC-CCeEcCcceEEEEecCCCCCCEEEEEeCC--CCCCC
Confidence            9999999999999999999874   457899999999999999 99999999999999999999999999999  99999


Q ss_pred             ccccEEEEEee
Q psy11062        221 QCSLVCWSTLR  231 (281)
Q Consensus       221 ~~~~~~~~~~~  231 (281)
                      .++.++|++..
T Consensus       363 ~n~~i~y~i~~  373 (550)
T 3q2v_A          363 MDQKITYRIWR  373 (550)
T ss_dssp             TTCCCEEEEEE
T ss_pred             CCCCEEEEEec
Confidence            99999998854

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=3.7e-40  Score=315.55  Aligned_cols=226  Identities=28%  Similarity=0.373  Sum_probs=204.2

Q ss_pred             CEEEEecC----CCcEEEEEEeCCCC----ceEEEECCccEEEECc-CCCceeccEEEEEEEEEeC-C---CCceeEEEE
Q psy11062          1 MKILLLDQ----SNPIRYTIHSGDPE----GYFTLDSTTGVIRTAA-TLDHEVTGVLLLSVQASSG-S---PPLYSYAQV   67 (281)
Q Consensus         1 ~~~~d~d~----~~~l~Y~i~~g~~~----~~F~Id~~~G~i~~~~-~LD~E~~~~~~l~v~a~dg-~---~~~~~~~~v   67 (281)
                      ++|+|.|.    |+.++|+|.++.+.    ++|.|++.+|.|++.+ .||||+...|.|.|.|+|+ .   +++++++.|
T Consensus       130 v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v  209 (559)
T 3q2w_A          130 VTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATA  209 (559)
T ss_dssp             CCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEE
T ss_pred             EEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEE
Confidence            46788884    67899999876543    7899999999999987 9999999999999999974 2   357899999


Q ss_pred             EEEEEecCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCC--CceEEEEEeeCCCCCceeeEE----eCceeEEE
Q psy11062         68 KVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD--NGKIRYHLASGNFGDSRLFAV----DQTSGHLS  141 (281)
Q Consensus        68 ~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~--~~~i~y~l~~~~~~~~~~F~i----d~~tG~i~  141 (281)
                      +|.|.|+|||+|.|....|.+.|+|+. +|+.++.+.|+|+|.+.  ++.++|+|..++  ..+.|.|    +..+|.|+
T Consensus       210 ~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~--~~~~F~I~~~~~~~~G~i~  286 (559)
T 3q2w_A          210 VITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGD--PTGRFAILTDPNSNDGLVT  286 (559)
T ss_dssp             EEEEECCSCSCCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESC--TTCCEEEEECTTTCEEEEE
T ss_pred             EEEEEeCCCCCCccccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCC--CCCceEEEecCCCCcEEEE
Confidence            999999999999999999999999997 89999999999999875  668999999864  4678999    57899999


Q ss_pred             EceecCccCcceEEEEEEEEECC------CCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEE
Q psy11062        142 LSKHLDYETSQRHTIVVSATDQG------DPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLY  215 (281)
Q Consensus       142 ~~~~LD~E~~~~y~l~V~a~D~~------~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~y  215 (281)
                      +.++||||....|.|+|.|+|++      .|+++++++|+|.|.|+|| +|.|.+..|.+.|+|+.++|+.|++|.|+  
T Consensus       287 ~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~A~--  363 (559)
T 3q2w_A          287 VVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQ--  363 (559)
T ss_dssp             ECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEEECCEE--
T ss_pred             eCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEEEEEEE--
Confidence            99999999999999999999974      3568899999999999999 69999999999999999999999999999  


Q ss_pred             EeecCccccEEEEEeec
Q psy11062        216 VLVEGQCSLVCWSTLRL  232 (281)
Q Consensus       216 d~d~g~~~~~~~~~~~~  232 (281)
                      |.|.|.++.++|++...
T Consensus       364 D~D~g~n~~i~Ysi~~~  380 (559)
T 3q2w_A          364 DPDRYMQQNIRYTKLSD  380 (559)
T ss_dssp             CSCSSSCCCEEEEEEEC
T ss_pred             CCCCCCCCceEEEEccC
Confidence            99999999999988653

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=4.3e-41  Score=321.13  Aligned_cols=224  Identities=26%  Similarity=0.365  Sum_probs=204.1

Q ss_pred             CEEEEecC-----CCcEEEEEEeCCC----CceEEEECCccEEEEC-cCCCceeccEEEEEEEEEe-CCCCceeEEEEEE
Q psy11062          1 MKILLLDQ-----SNPIRYTIHSGDP----EGYFTLDSTTGVIRTA-ATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKV   69 (281)
Q Consensus         1 ~~~~d~d~-----~~~l~Y~i~~g~~----~~~F~Id~~~G~i~~~-~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i   69 (281)
                      ++|+|.|.     |+.++|+|.++.+    .++|+|++.+|.|++. +.||||....|.|.|.|+| |.+++++++.|.|
T Consensus       136 v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I  215 (546)
T 1l3w_A          136 VSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII  215 (546)
T ss_dssp             CCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEE
T ss_pred             EEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCCcceEEEEEE
Confidence            46788875     4899999998763    4799999999999985 7999999999999999996 4557889999999


Q ss_pred             EEEecCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCC--CCCCceEEEEEeeCCCCCceeeEEe----CceeEEEEc
Q psy11062         70 TIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYHLASGNFGDSRLFAVD----QTSGHLSLS  143 (281)
Q Consensus        70 ~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D--~g~~~~i~y~l~~~~~~~~~~F~id----~~tG~i~~~  143 (281)
                      .|.|+|||+|.|....|.+.|+|+ ++|+.++++.|+|+|  .|.|+.++|+|.. +  ..+.|.|+    ..+|.|++.
T Consensus       216 ~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~-~--~~~~F~I~~d~~~~~G~i~~~  291 (546)
T 1l3w_A          216 QITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV-N--EGGFFNITTDPESNQGILTTA  291 (546)
T ss_dssp             EEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC-C--TTSCEEEEECTTTCCEEEEES
T ss_pred             EEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEe-C--CCceEEEEecCCCCeEEEEEC
Confidence            999999999999999999999999 999999999999999  7789999999987 3  46789995    268999999


Q ss_pred             eecCccCcceEEEEEEEEECCC---CCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecC
Q psy11062        144 KHLDYETSQRHTIVVSATDQGD---PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEG  220 (281)
Q Consensus       144 ~~LD~E~~~~y~l~V~a~D~~~---p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g  220 (281)
                      ++||||....|.|.|+|+|++.   |.++++++|+|.|.|+|| +|.|.+..|.+.|+|+.++|+.|+++.|+  |.|.|
T Consensus       292 ~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~En~~~g~~v~~v~A~--D~D~g  368 (546)
T 1l3w_A          292 KGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQ--DPDKQ  368 (546)
T ss_dssp             SCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEE--CCCTT
T ss_pred             ccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCC-CCcEecceEEEEEeCCCCCCCEEEEEEEE--CCCCC
Confidence            9999999999999999999873   567899999999999999 99999999999999999999999999999  99999


Q ss_pred             ccccEEEEEee
Q psy11062        221 QCSLVCWSTLR  231 (281)
Q Consensus       221 ~~~~~~~~~~~  231 (281)
                      .++.++|++..
T Consensus       369 ~n~~i~ysi~~  379 (546)
T 1l3w_A          369 QIQKLSYFIGN  379 (546)
T ss_dssp             CCCCEEEEECC
T ss_pred             CCceEEEEECC
Confidence            99999998865

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=6.1e-40  Score=303.90  Aligned_cols=220  Identities=19%  Similarity=0.254  Sum_probs=194.7

Q ss_pred             CEEEEec--CCCcEEEEEEeCCCCceEEEEC--------CccEEEECcCCCceec---cEEEEEEEEEeCC-C---Ccee
Q psy11062          1 MKILLLD--QSNPIRYTIHSGDPEGYFTLDS--------TTGVIRTAATLDHEVT---GVLLLSVQASSGS-P---PLYS   63 (281)
Q Consensus         1 ~~~~d~d--~~~~l~Y~i~~g~~~~~F~Id~--------~~G~i~~~~~LD~E~~---~~~~l~v~a~dg~-~---~~~~   63 (281)
                      |+|+|.|  .|+.+.|+|..++....|+|++        .+|.|+++++||||+.   ..|.+.|.|.++. +   ..++
T Consensus        14 v~AtD~D~g~n~~v~Ysi~~~~~~~~F~I~~~~~~f~v~~tG~i~~~~~LD~E~~~~~~~~~~~V~a~d~g~~~~~~~~~   93 (419)
T 3ubh_A           14 IEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTD   93 (419)
T ss_dssp             EEEEGGGGCSTTCEEEECCCSSTTCEEEESSCCSSEEECTTSEEEESSCCCGGGSCTTCEEEEEEEEEC--CCSSSCCEE
T ss_pred             EEEEcccCCCCceEEEEEecCCCCceEEEcCCCccEEECCCcEEEECCccCccccCccceEEEEEEEEeCCCCCCCCCcc
Confidence            4677777  6889999998877778999987        7999999999999998   6899999999643 2   4677


Q ss_pred             EEEEEEEEEecCCCCCeeccCc--EEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEE
Q psy11062         64 YAQVKVTIEDRNDNAPEFESTT--IRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLS  141 (281)
Q Consensus        64 ~~~v~i~V~dvNd~~P~f~~~~--~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~  141 (281)
                      ++.|+|.|.|+|||+|.|....  |.+.|+|++++|+.++++.|+|+|.|.|  ++|+|..++  ....|.|++.+|.|+
T Consensus        94 ~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~~~--~~~~F~I~~~tG~i~  169 (419)
T 3ubh_A           94 NQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR--TGGRFEVDERSGVVR  169 (419)
T ss_dssp             EEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEES--SSSCEEECTTTCEEE
T ss_pred             eEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCCCce--eEEEEEeCC--CCCeEEEeCCceEEE
Confidence            8999999999999999999876  7899999999999999999999999876  899998753  457899999999999


Q ss_pred             EceecCccCcceEEEEEEEEECCCC----CCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEe
Q psy11062        142 LSKHLDYETSQRHTIVVSATDQGDP----PMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVL  217 (281)
Q Consensus       142 ~~~~LD~E~~~~y~l~V~a~D~~~p----~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~  217 (281)
                      +.+.||+|....|.|+|+|+|++.+    ++++++.++|.|.| |||+|.|.+..|.+.|+|+.++|+.|++|.|.  |.
T Consensus       170 ~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A~--D~  246 (419)
T 3ubh_A          170 TRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAK--SF  246 (419)
T ss_dssp             ECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCCTTCEEEECCEE--CS
T ss_pred             EecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCCCCcEEEEEEEe--cC
Confidence            9999999999999999999998764    56788999999999 99999999999999999999999999999998  54


Q ss_pred             ecCccccEEEEEe
Q psy11062        218 VEGQCSLVCWSTL  230 (281)
Q Consensus       218 d~g~~~~~~~~~~  230 (281)
                         +++.++|++.
T Consensus       247 ---dn~~i~Ysi~  256 (419)
T 3ubh_A          247 ---ADREIRYTLK  256 (419)
T ss_dssp             ---SCCCCEEEEE
T ss_pred             ---CCCceEEEEe
Confidence               3667777775

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=1e-39  Score=276.34  Aligned_cols=180  Identities=27%  Similarity=0.437  Sum_probs=158.2

Q ss_pred             EEecC-CCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCC--CCceeEEEEEEEEEecCCCCCe
Q psy11062          4 LLLDQ-SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS--PPLYSYAQVKVTIEDRNDNAPE   80 (281)
Q Consensus         4 ~d~d~-~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~--~~~~~~~~v~i~V~dvNd~~P~   80 (281)
                      +|.|. ++.|+|+|.+++..++|+|++.+|.|+++++||||....|.|.|.|.|+.  +++++++.|.|.|.|+|||+|.
T Consensus        27 ~D~D~gn~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~  106 (215)
T 2a4e_A           27 SDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPE  106 (215)
T ss_dssp             CTTCCSSSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCEEEEEEEEEEEEECCCCCCCE
T ss_pred             ECCCCCCCeEEEEEECCCCCCeEEEECCceEEEECCccCCccCCEEEEEEEEEECCCCCcccccEEEEEEEeeCCCCCCC
Confidence            44554 47899999876555789999999999999999999999999999999764  4577889999999999999999


Q ss_pred             eccCcEEEEEeCCCCCCceEEEEEEEeCCC---CCCceEEEEEeeCCCCCceeeEEeCceeEEEEc-eecCccCcceEEE
Q psy11062         81 FESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLS-KHLDYETSQRHTI  156 (281)
Q Consensus        81 f~~~~~~~~v~En~~~gt~v~~v~a~D~D~---g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~y~l  156 (281)
                      |....|.+.|+|+.++|+.|+++.|+|+|.   |.|+.++|+|..+    ...|.|++.+|.|+++ ++||||....|.|
T Consensus       107 F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~----~~~F~Id~~tG~I~~~~~~LD~E~~~~y~l  182 (215)
T 2a4e_A          107 FLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG----QPYFSVEAQTGIIRTALPNMDREAKEEYHV  182 (215)
T ss_dssp             ESSSSEEEEEETTCCTTCEEEECCEECSSCTTTCSSSCCEEEEEES----TTTEEECTTTCEEEECSSCCCSSSCSEEEE
T ss_pred             ccCCceEEEEECCCCCCCEEEEEEEEECCCCCCCCceEEEEEEeCC----CCcEEEeCCccEEEEcccCCCcccCCEEEE
Confidence            999999999999999999999999999997   8899999999985    3589999999999999 9999999999999


Q ss_pred             EEEEEECCCC--CCeEEEEEEEEEEeCCCCCCe
Q psy11062        157 VVSATDQGDP--PMSSNLTVLLEVQDVNDNPPV  187 (281)
Q Consensus       157 ~V~a~D~~~p--~~~~~~~v~I~V~DvND~~P~  187 (281)
                      .|+|+|+|.|  +++++++|+|+|.|+|||+|+
T Consensus       183 ~V~A~D~g~~~~~~s~~~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          183 VIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK  215 (215)
T ss_dssp             EEEEETTTTCTTCCEEEEEEEEEEEC-------
T ss_pred             EEEEEECCCCCCCceeEEEEEEEEEECCCCCCC
Confidence            9999999976  589999999999999999995

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=1.9e-39  Score=324.14  Aligned_cols=224  Identities=26%  Similarity=0.354  Sum_probs=204.0

Q ss_pred             CEEEEecCC-----CcEEEEEEeCCC----CceEEEECCccEEEEC-cCCCceeccEEEEEEEEEeC-CCCceeEEEEEE
Q psy11062          1 MKILLLDQS-----NPIRYTIHSGDP----EGYFTLDSTTGVIRTA-ATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKV   69 (281)
Q Consensus         1 ~~~~d~d~~-----~~l~Y~i~~g~~----~~~F~Id~~~G~i~~~-~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i   69 (281)
                      ++|+|.|.+     +.++|+|.++.+    .++|+|++.+|.|++. +.||||+...|.|.|.|+|+ .++++++++|+|
T Consensus       285 v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I  364 (880)
T 1q55_A          285 VSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII  364 (880)
T ss_dssp             CCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEE
T ss_pred             EEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHHcceeEEEEEEEECCCCCccceeEEEE
Confidence            467888764     789999998763    4799999999999995 79999999999999999964 457889999999


Q ss_pred             EEEecCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCC--CCCCceEEEEEeeCCCCCceeeEEe--C--ceeEEEEc
Q psy11062         70 TIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYHLASGNFGDSRLFAVD--Q--TSGHLSLS  143 (281)
Q Consensus        70 ~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D--~g~~~~i~y~l~~~~~~~~~~F~id--~--~tG~i~~~  143 (281)
                      .|.|+|||+|.|....|.+.|+|| ++|+.|+++.|+|+|  .|.|+.++|+|..   +..+.|.|+  +  .+|.|++.
T Consensus       365 ~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~---~~~~~F~I~~d~~~~~G~i~~~  440 (880)
T 1q55_A          365 QITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV---NEGGFFNITTDPESNQGILTTA  440 (880)
T ss_dssp             EEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC---CTTSCEEEEECTTTCCEEEEES
T ss_pred             EEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEECCCCCCCCCceEEEEEec---CCCceEEEEecCCCceEEEecc
Confidence            999999999999999999999999 999999999999999  6789999999987   356789995  3  67999999


Q ss_pred             eecCccCcceEEEEEEEEECCC---CCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecC
Q psy11062        144 KHLDYETSQRHTIVVSATDQGD---PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEG  220 (281)
Q Consensus       144 ~~LD~E~~~~y~l~V~a~D~~~---p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g  220 (281)
                      ++||||....|.|+|+|+|++.   |.++++++|+|.|.|+|| +|+|.+..|.+.|+|+.++|+.|++|.|+  |.|.|
T Consensus       441 ~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~~v~A~--D~D~g  517 (880)
T 1q55_A          441 KGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQ--DPDKQ  517 (880)
T ss_dssp             SCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEE--CCCTT
T ss_pred             cCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEEEEEEE--eCCCC
Confidence            9999999999999999999874   457899999999999999 99999999999999999999999999999  99999


Q ss_pred             ccccEEEEEee
Q psy11062        221 QCSLVCWSTLR  231 (281)
Q Consensus       221 ~~~~~~~~~~~  231 (281)
                      .++.++|++..
T Consensus       518 ~n~~v~Ysi~~  528 (880)
T 1q55_A          518 QIQKLSYFIGN  528 (880)
T ss_dssp             CCCCEEEEECC
T ss_pred             CCCcEEEEECC
Confidence            99999998865

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=2.2e-38  Score=267.32  Aligned_cols=178  Identities=27%  Similarity=0.506  Sum_probs=163.7

Q ss_pred             CEEEEecCCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCCCCceeEEEEEEEEEecCCCCCe
Q psy11062          1 MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPE   80 (281)
Q Consensus         1 ~~~~d~d~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~~~~~~~~~v~i~V~dvNd~~P~   80 (281)
                      ++|+|.|. +.+.|+|.+++..++|.|++.+|.|+++++||||+...|.|.|.|.|+..  .+++.+.|.|.|+|||+|.
T Consensus        32 v~A~D~D~-~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~D~~~--~~~~~v~I~V~DvNDn~P~  108 (210)
T 3mvs_A           32 LLARDMDN-DPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG--VITRKVNIQVGDVNDNAPT  108 (210)
T ss_dssp             CCEECTTC-CCCEEEEESHHHHHHEEECTTTCEEEESSCCCTTTCCEEEEEEEEECSSC--EEEEEEEEEEECCCCCCCE
T ss_pred             EEEEeCCC-CcEEEEEeCCCCCCcEEEeCCCCEEEECCccCCcccceEEEEEEEEeCCC--CEEEEEEEEEEeCCCCCCc
Confidence            45777774 67999998766668999999999999999999999999999999998753  4678999999999999999


Q ss_pred             eccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEE
Q psy11062         81 FESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSA  160 (281)
Q Consensus        81 f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a  160 (281)
                      |....|.+.|+|+.++|+.++++.|+|+|.|.|+.++|+|..+    ...|.|++.+|.|++.++||||....|.|.|+|
T Consensus       109 f~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~~----~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a  184 (210)
T 3mvs_A          109 FHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP----SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNA  184 (210)
T ss_dssp             ECSCSEEEEEETTCCTTCEEEECCEECCSSGGGGCEEEEESSC----CSSEEECTTTCEEEECSCCCTTTCSEEEEEEEE
T ss_pred             CCCceEEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEeCC----CCCEEEeCCcEEEEECCcCCCcccceEEEEEEE
Confidence            9999999999999999999999999999999999999999863    468999999999999999999999999999999


Q ss_pred             EECC-CCCCeEEEEEEEEEEeCCCCC
Q psy11062        161 TDQG-DPPMSSNLTVLLEVQDVNDNP  185 (281)
Q Consensus       161 ~D~~-~p~~~~~~~v~I~V~DvND~~  185 (281)
                      +|++ .|++++++.|+|.|.|+|||+
T Consensus       185 ~D~g~~~~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          185 TDQDKTRPLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             EECCSSSCCEEEEEEEEEEECCCCCC
T ss_pred             EECCCCCCCEEEEEEEEEEEccCCCC
Confidence            9998 468999999999999999985

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.7e-40  Score=282.55  Aligned_cols=185  Identities=19%  Similarity=0.163  Sum_probs=162.6

Q ss_pred             CEEEEecCCCcEEEEEE----------eCCCCceEEEECCccEEEECcCCCceeccEE------------EEEEEEEeCC
Q psy11062          1 MKILLLDQSNPIRYTIH----------SGDPEGYFTLDSTTGVIRTAATLDHEVTGVL------------LLSVQASSGS   58 (281)
Q Consensus         1 ~~~~d~d~~~~l~Y~i~----------~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~------------~l~v~a~dg~   58 (281)
                      |+|+|.|.+..+.|+|.          .+ ..++|+|++.+|.|+++++||||....|            .|.|.|+|+.
T Consensus        25 v~A~D~D~g~~~~~~i~~~~~~~y~i~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~~~~~G~p~~~~~l~V~a~D~g  103 (246)
T 2x2u_A           25 VHALRDAPEEVPSFRLGQHLYGTYRTRLH-ENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTS  103 (246)
T ss_dssp             CCEECSSTTCCCCCEECSEEECGGGCEEE-ECCSEEECTTTCEEEESSCBCHHHHHHHHHTSTTSCCCEEEEEEECC---
T ss_pred             EEEEcCCCCCcceEEEeeccccceeccCC-CCCEEEECCCcEEEEECCcCChhHhhhhccccCCCcccceEEEEEEEcCC
Confidence            46778887556666664          22 3478999999999999999999999999            9999999654


Q ss_pred             -C--CceeEEEEEEEEEecCCCCCe----------eccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCC
Q psy11062         59 -P--PLYSYAQVKVTIEDRNDNAPE----------FESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNF  125 (281)
Q Consensus        59 -~--~~~~~~~v~i~V~dvNd~~P~----------f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~  125 (281)
                       +  ++++++.|.|.|.|+|||+|.          |....|.+.|+||.++|+.++++.|+|+|.|.|+.++|+|..++ 
T Consensus       104 ~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~-  182 (246)
T 2x2u_A          104 LREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE-  182 (246)
T ss_dssp             ----CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCT-
T ss_pred             CCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCC-
Confidence             3  467888999999999999999          99999999999999999999999999999999999999999853 


Q ss_pred             CCceeeEEeCceeEEEEceecCccCcceEEEEEEEEE-CCCCCCeEEEEEEEEEEeCCCCCCeee
Q psy11062        126 GDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD-QGDPPMSSNLTVLLEVQDVNDNPPVFE  189 (281)
Q Consensus       126 ~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D-~~~p~~~~~~~v~I~V~DvND~~P~f~  189 (281)
                        ...|.|++.+|.|++.++||||....|.|.|+|+| .|.|+++++++|+|+|.|+|||+|.|.
T Consensus       183 --~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p~~ss~~~v~I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          183 --GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE  245 (246)
T ss_dssp             --TSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred             --CCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCCCcceEEEEEEEEEEEeCCCCCccC
Confidence              67899999999999999999999999999999998 566889999999999999999999995

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=1.9e-37  Score=262.27  Aligned_cols=176  Identities=28%  Similarity=0.428  Sum_probs=161.2

Q ss_pred             EecCCCcEEEEEEeC----CCCceEEEECCccEEEECcCCCceeccEEEEEEEEEe-CCCCceeEEEEEEEEEecCCCCC
Q psy11062          5 LLDQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNAP   79 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g----~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i~V~dvNd~~P   79 (281)
                      |.|.++.++|+|.++    ++.++|.|++.+|.|++.++||||....|.|.|.|.| |.++.++++.|.|.|.|+|||+|
T Consensus        27 D~d~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P  106 (213)
T 3qrb_A           27 NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP  106 (213)
T ss_dssp             GGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCC
T ss_pred             CCCCCceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEeCCCCcccceEEEEEEEEEccCCCC
Confidence            677889999999873    4456999999999999999999999999999999996 45567788999999999999999


Q ss_pred             eeccCcEEEEEeCCCCCCceEEEEEEEeCCCC---CCceEEEEEeeCCCC--CceeeEEeCceeEEEEc-eecCccCcce
Q psy11062         80 EFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLS-KHLDYETSQR  153 (281)
Q Consensus        80 ~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g---~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~~-~~LD~E~~~~  153 (281)
                      .|....|.+.|+|+.++|+.++++.|+|+|.|   .|+.++|+|..+++.  ....|.|++.+|.|++. ++||||....
T Consensus       107 ~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~  186 (213)
T 3qrb_A          107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT  186 (213)
T ss_dssp             EESCSEEEEEEETTCCTTCEEEECCEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCE
T ss_pred             ccCCCceEEEEECCCCCCcEEEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCce
Confidence            99999999999999999999999999999998   899999999875422  45789999999999997 7999999999


Q ss_pred             EEEEEEEEECCCCCCeEEEEEEEEEEe
Q psy11062        154 HTIVVSATDQGDPPMSSNLTVLLEVQD  180 (281)
Q Consensus       154 y~l~V~a~D~~~p~~~~~~~v~I~V~D  180 (281)
                      |.|.|+|+|+|.|+++++++|+|+|.|
T Consensus       187 y~l~V~A~D~g~~~~s~t~~v~I~V~D  213 (213)
T 3qrb_A          187 YTLVVQAADLQGEGLSTTAKAVITVKD  213 (213)
T ss_dssp             EEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCCCCceEEEEEEEEEEC
Confidence            999999999999999999999999987

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=1.3e-35  Score=249.02  Aligned_cols=171  Identities=29%  Similarity=0.394  Sum_probs=157.4

Q ss_pred             EEecCCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCCC--CceeEEEEEEEEEecCCCCCee
Q psy11062          4 LLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSP--PLYSYAQVKVTIEDRNDNAPEF   81 (281)
Q Consensus         4 ~d~d~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~~--~~~~~~~v~i~V~dvNd~~P~f   81 (281)
                      .|.|.+.. +|+|.+++..++|+|++.+|.|+++++||||....|.|.|.|.|+..  ++++++.|.|.|.|+|||+|.|
T Consensus        26 ~D~D~g~~-~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~~v~I~V~DvNDn~P~F  104 (203)
T 3ppe_A           26 SSVGNKNA-MYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIF  104 (203)
T ss_dssp             BCCCCTTE-EEEEEETTBTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTTTEECSCCEEEEEEEECCCCCCCEE
T ss_pred             ecCCCCCc-EEEEecCCCCCeEEEECCcCEEEECccccccccceEEEEEEEEECCCCCcccceEEEEEEEcCCCCCCCCc
Confidence            45666556 99999888778999999999999999999999999999999997653  4678899999999999999999


Q ss_pred             ccCcEEEEEeCCCCCCceEEEEEEEeCC---CCCCceEEEEEeeCCCCCceeeEEeCceeEEEEc-eecCccCcceEEEE
Q psy11062         82 ESTTIRLSVPESAALGLPLYTVVARDKD---SGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLS-KHLDYETSQRHTIV  157 (281)
Q Consensus        82 ~~~~~~~~v~En~~~gt~v~~v~a~D~D---~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~y~l~  157 (281)
                      ....|.+.|+|+.++|+.++++.|+|+|   .|.|+.++|+|..++    ..|.|+ .+|.|++. ++||||....|.|.
T Consensus       105 ~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~----~~F~I~-~tG~i~~~~~~LD~E~~~~y~l~  179 (203)
T 3ppe_A          105 VQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN----EYFTVD-DSGVIFTARADLDRESQSAYEII  179 (203)
T ss_dssp             SCSEEEEEEETTCCTTCEEEECCEECCSCTTSSSTTCEEEEEEEST----TTEEEC-TTSEEEESCSCCCTTTCSEEEEE
T ss_pred             cCCccEEEEeccCCCCcEEEEEEEEcCCCcCCCCceEEEEEEeCCC----CcEEEe-CCeEEEECCcCCCcccCCEEEEE
Confidence            9999999999999999999999999999   578999999999853    489999 99999999 99999999999999


Q ss_pred             EEEEEC-CCCCCeEEEEEEEEEEe
Q psy11062        158 VSATDQ-GDPPMSSNLTVLLEVQD  180 (281)
Q Consensus       158 V~a~D~-~~p~~~~~~~v~I~V~D  180 (281)
                      |+|+|+ |.|+++++++|+|+|.|
T Consensus       180 V~A~D~~G~p~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          180 VKAKDALGLTGESSTATVIIRLTD  203 (203)
T ss_dssp             EEEEETTCCCCSSSEEEEEEEEEC
T ss_pred             EEEEeCCCCCCCeEEEEEEEEEEC
Confidence            999998 77889999999999987

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=2.7e-36  Score=255.34  Aligned_cols=176  Identities=27%  Similarity=0.416  Sum_probs=159.6

Q ss_pred             EecCCCcEEEEEEeCC----CCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC-CCCceeEEEEEEEEEecCCCCC
Q psy11062          5 LLDQSNPIRYTIHSGD----PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKVTIEDRNDNAP   79 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g~----~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i~V~dvNd~~P   79 (281)
                      |.|.|+.|+|+|.++.    +.++|+|++.+|.|+++++||||....|.|.|.|.|+ .+++++++.|.|.|.|+|||+|
T Consensus        27 D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P  106 (215)
T 2qvi_A           27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP  106 (215)
T ss_dssp             GGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCCEEEEEEEEEEECCCCCCC
T ss_pred             CCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECCCCceeeeEEEEEEEeECCCCCC
Confidence            4456789999998653    3579999999999999999999999999999999964 5567889999999999999999


Q ss_pred             eeccCcEEEEEeCCCCCCceEEEEEEEeCCC--CCCceEEEEEeeCCCC--CceeeEEeCceeEEEEc-eecCccCcceE
Q psy11062         80 EFESTTIRLSVPESAALGLPLYTVVARDKDS--GDNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLS-KHLDYETSQRH  154 (281)
Q Consensus        80 ~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~--g~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~~-~~LD~E~~~~y  154 (281)
                      .|....|.+.|+|+.++|+.++++.|+|+|.  |.|+.++|+|..+++.  ....|.|++.+|.|++. ++||||....|
T Consensus       107 ~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y  186 (215)
T 2qvi_A          107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY  186 (215)
T ss_dssp             BCSSSEEEEEECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSEE
T ss_pred             cccCceeEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCeE
Confidence            9999999999999999999999999999998  7899999999986421  46789999999999995 79999999999


Q ss_pred             EEEEEEEECCCC---CCeEEEEEEEEEEe
Q psy11062        155 TIVVSATDQGDP---PMSSNLTVLLEVQD  180 (281)
Q Consensus       155 ~l~V~a~D~~~p---~~~~~~~v~I~V~D  180 (281)
                      .|.|+|+|++.|   +++++++|+|+|+|
T Consensus       187 ~l~V~a~D~g~~p~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          187 TLIIQATDMEGNPTYGLSNTATAVITVTD  215 (215)
T ss_dssp             EEEEECCTTTTCTTTSCCCEEEEEEEECC
T ss_pred             EEEEEEEECCCCCCCCcceEEEEEEEEEC
Confidence            999999999887   78999999999987

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=1.1e-35  Score=252.20  Aligned_cols=179  Identities=25%  Similarity=0.405  Sum_probs=160.5

Q ss_pred             EEEEecCCCcEEEEEEe----CCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC-CCCceeEEEEEEEEEecCC
Q psy11062          2 KILLLDQSNPIRYTIHS----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKVTIEDRND   76 (281)
Q Consensus         2 ~~~d~d~~~~l~Y~i~~----g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i~V~dvNd   76 (281)
                      ++.++|.+..++|+|.+    +++.++|.|++.+|.|+++++||||+...|.|.|.|+|+ .+++++++.|.|.|.|+||
T Consensus        24 ~v~a~D~d~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvND  103 (218)
T 3k5r_A           24 KVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQND  103 (218)
T ss_dssp             ECBCTTCCTTCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECSSSCEEEEEEEEEEEEECTTC
T ss_pred             EEEecCCCceEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEECCCCceeeeEEEEEEEEeCCC
Confidence            35566777799999975    345589999999999999999999999999999999964 4567889999999999999


Q ss_pred             CCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCC--CCCceEEEEEeeCCCC--CceeeEEeCceeEEEEc---eecCcc
Q psy11062         77 NAPEFESTTIRLSVPESAALGLPLYTVVARDKDS--GDNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLS---KHLDYE  149 (281)
Q Consensus        77 ~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~--g~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~~---~~LD~E  149 (281)
                      |+|.|....|.+.|+|+.++|+.++++.|+|+|.  |.|+.++|+|..++..  ....|.||+.+|.|++.   ++||||
T Consensus       104 n~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E  183 (218)
T 3k5r_A          104 NRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRE  183 (218)
T ss_dssp             CCCCCCSCSEEEEEETTCCTTCEEEECCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGG
T ss_pred             CCCcccCCceEEEEECCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCcc
Confidence            9999999999999999999999999999999998  7899999999975421  13679999999999987   699999


Q ss_pred             C--cceEEEEEEEEECC--CCCCeEEEEEEEEEEe
Q psy11062        150 T--SQRHTIVVSATDQG--DPPMSSNLTVLLEVQD  180 (281)
Q Consensus       150 ~--~~~y~l~V~a~D~~--~p~~~~~~~v~I~V~D  180 (281)
                      .  ...|.|.|+|+|+|  .|+++++++|+|+|.|
T Consensus       184 ~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V~D  218 (218)
T 3k5r_A          184 TLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD  218 (218)
T ss_dssp             GCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEEEC
T ss_pred             ccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEEEC
Confidence            9  67999999999999  8889999999999987

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=3.1e-36  Score=253.66  Aligned_cols=174  Identities=27%  Similarity=0.449  Sum_probs=152.4

Q ss_pred             EEEecC-CCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC--CCCceeEEEEEEEEEecCCCCC
Q psy11062          3 ILLLDQ-SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG--SPPLYSYAQVKVTIEDRNDNAP   79 (281)
Q Consensus         3 ~~d~d~-~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg--~~~~~~~~~v~i~V~dvNd~~P   79 (281)
                      |+|.|. ++.|.|+|.+++..++|+|++.+|.|++.++||||+...|.|.|.|.|+  .+++++++.+.|.|.|+|||+|
T Consensus        25 a~D~D~g~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P  104 (207)
T 3lnd_A           25 HSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEP  104 (207)
T ss_dssp             CCTTCCSSTTBCCCCCSSSBTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSSSCCCCSCCCCCEEEEECCSCCCC
T ss_pred             EeCCCCCCceEEEEEECCCCCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECCCCCccccEEEEEEEECccCCCCC
Confidence            345553 5679999986666579999999999999999999999999999999975  3567788899999999999999


Q ss_pred             eeccCcEEEEEeCCCCCCceEEEEEEEeCCC---CCCceEEEEEeeCCCCCceeeEEeCceeEEEEc-eecCccCcceEE
Q psy11062         80 EFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLS-KHLDYETSQRHT  155 (281)
Q Consensus        80 ~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~---g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~y~  155 (281)
                      .|....|.+.|+|+.++|+.++++.|+|+|.   |.|+.++|+|..+    ...|.|++.+|.|++. ++||||....|.
T Consensus       105 ~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~----~~~F~Id~~tG~i~~~~~~lD~E~~~~y~  180 (207)
T 3lnd_A          105 IFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG----QPYFSVESETGIIKTALLNMDRENREQYQ  180 (207)
T ss_dssp             EESCSEEEEEEESSCCTTCEEEECCEECSSCTTSSSTTCCEEEEEES----GGGEEECTTTCEEEECCSSCCC--CCEEE
T ss_pred             ccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCCCcEEEEEEcCC----CCCEEEcCCCcEEEECcccCCcccCCEEE
Confidence            9999999999999999999999999999998   8899999999984    4589999999999999 999999999999


Q ss_pred             EEEEEEECCCC--CCeEEEEEEEEEEe
Q psy11062        156 IVVSATDQGDP--PMSSNLTVLLEVQD  180 (281)
Q Consensus       156 l~V~a~D~~~p--~~~~~~~v~I~V~D  180 (281)
                      |.|+|+|+|.|  +++++++|+|+|.|
T Consensus       181 l~V~A~D~g~~~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          181 VVIQAKDMGGQMGGLSGTTTVNITLTD  207 (207)
T ss_dssp             EEEEEESGGGCTTCBEEEEEEEEEEEC
T ss_pred             EEEEEEECCCCCCCcEeEEEEEEEEeC
Confidence            99999999876  78999999999987

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=6.1e-34  Score=254.40  Aligned_cols=178  Identities=26%  Similarity=0.413  Sum_probs=156.5

Q ss_pred             CEEEEecCCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCC-----CCceeEEEEEEEEEecC
Q psy11062          1 MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS-----PPLYSYAQVKVTIEDRN   75 (281)
Q Consensus         1 ~~~~d~d~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~-----~~~~~~~~v~i~V~dvN   75 (281)
                      ++|+|.|.+..+.|+|..++..++|.|++.+|.|+++++||||....|.|.|.|+|+.     +++++++.++|.|.| |
T Consensus       130 v~A~D~D~g~ni~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-n  208 (316)
T 3ubf_A          130 LQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-G  208 (316)
T ss_dssp             CCEECSSTTCCEEEEEEEEESSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-S
T ss_pred             EEEECCCCCCceEEEEEeCCCCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-C
Confidence            5688888888899999988778899999999999999999999999999999999764     346788899999999 9


Q ss_pred             CCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEe-eCCCCCceeeEEeCceeEEEEceecCccCc---
Q psy11062         76 DNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLA-SGNFGDSRLFAVDQTSGHLSLSKHLDYETS---  151 (281)
Q Consensus        76 d~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~-~~~~~~~~~F~id~~tG~i~~~~~LD~E~~---  151 (281)
                      ||+|.|....|.+.|+||.++|+.++++.|+|+|   ++.++|+|. .+  ....+|.|++.+|.|++.++||||..   
T Consensus       209 Dn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D---n~~i~Y~i~~~~--~~~~~F~Id~~tG~i~~~~~LD~E~~~~~  283 (316)
T 3ubf_A          209 KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQG--QGAGTFNIGPTSGIVKLAKELDFEDLRQP  283 (316)
T ss_dssp             CCCCEESSSSEEEEEETTCCTTCEEEECCEECTT---CCCEEEEEEEES--SCTTTEEECTTTCEEEECSCCCSSCTTSC
T ss_pred             CCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCC---CCEEEEEEEcCC--CCCCeEEEECCeEEEEECCcCCccccCCC
Confidence            9999999999999999999999999999999998   678999998 44  35788999999999999999999997   


Q ss_pred             ceEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCC
Q psy11062        152 QRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNP  185 (281)
Q Consensus       152 ~~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~  185 (281)
                      ..|.|.|+|+|.++ ++++++.|+|+|+|+||||
T Consensus       284 ~~y~l~V~A~dd~g-~~~~~~~v~I~V~DvNDn~  316 (316)
T 3ubf_A          284 HVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNA  316 (316)
T ss_dssp             SEEEEEEEEEESSS-SCEEEEEEEEEEECC----
T ss_pred             ceEEEEEEEEECCC-CCEEEEEEEEEEEecCCCC
Confidence            79999999995333 4899999999999999986

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=8.5e-33  Score=247.38  Aligned_cols=175  Identities=31%  Similarity=0.506  Sum_probs=153.9

Q ss_pred             CEEEEecC-----CCcEEEEEEeCCCCceEEEECCccEEEEC-cCCCceeccEEEEEEEEEeCC-C--CceeEEEEEEEE
Q psy11062          1 MKILLLDQ-----SNPIRYTIHSGDPEGYFTLDSTTGVIRTA-ATLDHEVTGVLLLSVQASSGS-P--PLYSYAQVKVTI   71 (281)
Q Consensus         1 ~~~~d~d~-----~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~-~~LD~E~~~~~~l~v~a~dg~-~--~~~~~~~v~i~V   71 (281)
                      ++|+|.|.     |+.++|+|.+++  .+|.|++.+|.|+++ +.||||....|.|.|.|+|+. |  ++++++.|+|.|
T Consensus       128 v~A~D~D~~~~G~n~~i~Y~i~~~~--~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V  205 (322)
T 2a62_A          128 VTATDADDPVYGNSAKLVYSILEGQ--PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTL  205 (322)
T ss_dssp             CCCCBCSCSSSTTSSCEEEEEEECT--TTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEE
T ss_pred             EEEEeCCCCCCCccEEEEEEEccCC--CCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEE
Confidence            35667663     578999999865  579999999999998 899999999999999999754 3  378899999999


Q ss_pred             EecCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEe----CceeEEEEceecC
Q psy11062         72 EDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVD----QTSGHLSLSKHLD  147 (281)
Q Consensus        72 ~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id----~~tG~i~~~~~LD  147 (281)
                      .|+|||+|.|.+..|.+.|+|+.++|+.++++.|+|+|.|.|+.++|+|..++  ....|.|+    +.+|.|++.++||
T Consensus       206 ~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~--~~~~F~I~~d~~~~tG~i~~~~~LD  283 (322)
T 2a62_A          206 TDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGD--GTALFEITSDAQAQDGVIRLRKPLD  283 (322)
T ss_dssp             CCCCCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC-----CCSSBCCBCCTTTSEEEEEBCSCCC
T ss_pred             EecCCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCC--CCCcEEEeccCCCceEEEEECCcCC
Confidence            99999999999999999999999999999999999999999999999998764  46789998    4689999999999


Q ss_pred             ccCcceEEEEEEEEECCCCC-------CeEEEEEEEEEE
Q psy11062        148 YETSQRHTIVVSATDQGDPP-------MSSNLTVLLEVQ  179 (281)
Q Consensus       148 ~E~~~~y~l~V~a~D~~~p~-------~~~~~~v~I~V~  179 (281)
                      ||....|.|.|+|+|.|.|+       ++++++|+|.|.
T Consensus       284 ~E~~~~y~l~V~A~D~g~pp~~~~~~~~s~~~~V~I~V~  322 (322)
T 2a62_A          284 FETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVE  322 (322)
T ss_dssp             CSSCCEEEEEEEEECCCSSCTTSSCCCCCCCCEEEEEEC
T ss_pred             cccCCeEEEEEEEEECCCCCccccCCCcccEEEEEEEEC
Confidence            99999999999999998775       457888888773

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=99.97  E-value=3.1e-31  Score=223.58  Aligned_cols=183  Identities=22%  Similarity=0.273  Sum_probs=152.2

Q ss_pred             CCCCeeccCcEE--EEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcce
Q psy11062         76 DNAPEFESTTIR--LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQR  153 (281)
Q Consensus        76 d~~P~f~~~~~~--~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~  153 (281)
                      |++|.|....|.  +.|+|++++|+.++++.|+|+|.   +.++|+|.++  +...+|.|++.+|.|++.++||||....
T Consensus         3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~---~~~~y~i~~~--~~~~~F~Id~~tG~i~~~~~LD~E~~~~   77 (210)
T 3mvs_A            3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSGE--EASRFFAVEPDTGVVWLRQPLDRETKSE   77 (210)
T ss_dssp             CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTC---CCCEEEEESH--HHHHHEEECTTTCEEEESSCCCTTTCCE
T ss_pred             CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCC---CcEEEEEeCC--CCCCcEEEeCCCCEEEECCccCCcccce
Confidence            459999999886  69999999999999999999994   4689999874  2457899999999999999999999999


Q ss_pred             EEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecCccccEEEEEeecC
Q psy11062        154 HTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVCWSTLRLM  233 (281)
Q Consensus       154 y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g~~~~~~~~~~~~~  233 (281)
                      |.|.|.|+|++.   .+++.|+|.|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+  |.|.|.++.+.|++....
T Consensus        78 y~l~v~a~D~~~---~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~--D~D~g~n~~v~Y~i~~~~  152 (210)
T 3mvs_A           78 FTVEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT--DPDLGAGGSVLYSFQPPS  152 (210)
T ss_dssp             EEEEEEEECSSC---EEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEECCEE--CCSSGGGGCEEEEESSCC
T ss_pred             EEEEEEEEeCCC---CEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEE--eCCCCCCceEEEEEeCCC
Confidence            999999999876   467899999999999999999999999999999999999999999  999999999999997766


Q ss_pred             Chhhhh-ccCCCCCCCCcceEEEEEEEEEEecCcce
Q psy11062        234 THSTLK-SELNSPLGSNSFQLSILWYSIFLRTNTMQ  268 (281)
Q Consensus       234 ~~~~l~-~~~~~~~~~~~~~~~~~~y~~~~~~~~~~  268 (281)
                      ..+.++ ..|.-.+....-.-....|+|.|+..++.
T Consensus       153 ~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g  188 (210)
T 3mvs_A          153 PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQD  188 (210)
T ss_dssp             SSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECC
T ss_pred             CCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECC
Confidence            555554 23332222222112234677777766543

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.97  E-value=4.7e-30  Score=220.47  Aligned_cols=175  Identities=22%  Similarity=0.370  Sum_probs=148.2

Q ss_pred             EecCCCcEEEEEEeCCCCceEEEECCccEEEEC---cCCCceeccEEEEE---EEEEeCCCCceeEEEEEEEEEecCCCC
Q psy11062          5 LLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTA---ATLDHEVTGVLLLS---VQASSGSPPLYSYAQVKVTIEDRNDNA   78 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~---~~LD~E~~~~~~l~---v~a~dg~~~~~~~~~v~i~V~dvNd~~   78 (281)
                      |.+.|+.+.|+|.+ +...+|.|++.+|.+++.   +.||||....|.+.   +.+.++.....+.+.|.|.|.|+|||+
T Consensus        46 d~~~n~~i~ysl~~-~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v~~~~~~~~~~~~~~V~I~V~DvNDn~  124 (242)
T 4apx_B           46 AGGPDPTIELSLKD-NVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQCVNKKVGTVIYHEVRIVVRDRNDNS  124 (242)
T ss_dssp             BSSSSCSEEEEEES-CGGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEEEEEETTTCCEEEEEEEEEEECCCCCC
T ss_pred             CCCCCCEEEEEEec-CCCceEEECCCCCEEEEEecCCceeccCCCceEEEEEEEEeECCCCCeEEEEEEEEEEEeCCCCC
Confidence            44667889999964 445789999999999884   67999998766544   444455545667788999999999999


Q ss_pred             CeeccCcEEEEEeCCCCCCceEEE-----EEEEeCCCCCCceEEEEEeeCCCC--CceeeEEeC-ceeEEEEceecCccC
Q psy11062         79 PEFESTTIRLSVPESAALGLPLYT-----VVARDKDSGDNGKIRYHLASGNFG--DSRLFAVDQ-TSGHLSLSKHLDYET  150 (281)
Q Consensus        79 P~f~~~~~~~~v~En~~~gt~v~~-----v~a~D~D~g~~~~i~y~l~~~~~~--~~~~F~id~-~tG~i~~~~~LD~E~  150 (281)
                      |.|.+..|.+.|+||.++|+.|.+     +.|+|+|.|.|+.++|+|..++..  ....|.|+. .+|.|+++++||||.
T Consensus       125 P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~  204 (242)
T 4apx_B          125 PTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYED  204 (242)
T ss_dssp             CEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTT
T ss_pred             CcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhh
Confidence            999999999999999999999976     789999999999999999976532  246799985 589999999999999


Q ss_pred             cceEEEEEEEEECCCCC---CeEEEEEEEEEEe
Q psy11062        151 SQRHTIVVSATDQGDPP---MSSNLTVLLEVQD  180 (281)
Q Consensus       151 ~~~y~l~V~a~D~~~p~---~~~~~~v~I~V~D  180 (281)
                      ...|.|.|+|+|+|.|+   +++.+.|+|+|..
T Consensus       205 ~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          205 KTRYYVIIQANDRAQNLNERRTTTTTLTVDLEH  237 (242)
T ss_dssp             CCEEEEEEEEEECCSSGGGCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEECCcCchhcccCCceEEEEEee
Confidence            99999999999999884   7788999998875

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.97  E-value=8.5e-31  Score=201.42  Aligned_cols=118  Identities=36%  Similarity=0.566  Sum_probs=110.8

Q ss_pred             EEEEecCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCc
Q psy11062         69 VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDY  148 (281)
Q Consensus        69 i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~  148 (281)
                      +.|.|+|||+|.|.+..|.+.|+|+.++|+.++++.|+|+|.|.|+.++|+|..++.....+|.|++.+|.|+++++|||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~   81 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR   81 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCT
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCc
Confidence            36899999999999999999999999999999999999999999999999999754223578999999999999999999


Q ss_pred             cCcceEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCC
Q psy11062        149 ETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPP  186 (281)
Q Consensus       149 E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P  186 (281)
                      |....|.|.|+|+|+|.|++++++.|+|+|.|+|||+|
T Consensus        82 E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           82 EEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             TTCSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             ccCCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence            99999999999999999999999999999999999998

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=99.96  E-value=4.1e-29  Score=211.18  Aligned_cols=176  Identities=23%  Similarity=0.329  Sum_probs=145.6

Q ss_pred             EEEEEeCCC--CCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEEC
Q psy11062         86 IRLSVPESA--ALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQ  163 (281)
Q Consensus        86 ~~~~v~En~--~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~  163 (281)
                      +.+.|.||.  |.|+.++.+ |+|+|.| ++.++|+|.+++  ....|.|++.+|.|++.++||||....|.|.|+|+|+
T Consensus         6 ~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~~--~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~   81 (215)
T 2a4e_A            6 NQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGEG--AGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDR   81 (215)
T ss_dssp             CEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEETT--BTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred             eeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECCC--CCCeEEEECCceEEEECCccCCccCCEEEEEEEEEEC
Confidence            578899994  578889888 7999998 789999998742  3468999999999999999999999999999999999


Q ss_pred             CC-CCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeec---CccccEEEEEeecCChhhhh
Q psy11062        164 GD-PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVE---GQCSLVCWSTLRLMTHSTLK  239 (281)
Q Consensus       164 ~~-p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~---g~~~~~~~~~~~~~~~~~l~  239 (281)
                      +. +++++.+.|+|+|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+  |.|.   |.|+.++|++......+.++
T Consensus        82 ~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~--D~D~~~~G~n~~i~Y~i~~~~~~F~Id  159 (215)
T 2a4e_A           82 DTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTAS--DADDPTYGNSAKLVYSILEGQPYFSVE  159 (215)
T ss_dssp             TTCCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEE--CSSCTTTCSSSCCEEEEEESTTTEEEC
T ss_pred             CCCCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEE--ECCCCCCCCceEEEEEEeCCCCcEEEe
Confidence            85 567889999999999999999999999999999999999999999999  8887   88999999998776655555


Q ss_pred             c-cCCCCCC-CCcceEEEEEEEEEEecCcc
Q psy11062        240 S-ELNSPLG-SNSFQLSILWYSIFLRTNTM  267 (281)
Q Consensus       240 ~-~~~~~~~-~~~~~~~~~~y~~~~~~~~~  267 (281)
                      . .|...+. ...-.-....|+|.|++.++
T Consensus       160 ~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~  189 (215)
T 2a4e_A          160 AQTGIIRTALPNMDREAKEEYHVVIQAKDM  189 (215)
T ss_dssp             TTTCEEEECSSCCCSSSCSEEEEEEEEETT
T ss_pred             CCccEEEEcccCCCcccCCEEEEEEEEEEC
Confidence            2 2332222 22222234568888877664

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=99.96  E-value=5.1e-29  Score=210.69  Aligned_cols=178  Identities=20%  Similarity=0.263  Sum_probs=148.2

Q ss_pred             EEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCC--CCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECC
Q psy11062         87 RLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNF--GDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQG  164 (281)
Q Consensus        87 ~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~--~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~  164 (281)
                      .++|+||++ |+.++.+.+.|.|.+.|+.++|+|.++..  .....|.|++.+|.|++.++||||....|.|.|+|+|++
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g   84 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   84 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECC
Confidence            578999998 98889999999999889999999997532  235789999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeec--CccccEEEEEeecC------Chh
Q psy11062        165 DPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVE--GQCSLVCWSTLRLM------THS  236 (281)
Q Consensus       165 ~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~--g~~~~~~~~~~~~~------~~~  236 (281)
                      .|++++++.|+|+|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+  |.|.  |.|+.++|++....      ..+
T Consensus        85 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~--D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F  162 (215)
T 2qvi_A           85 GNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI--DADDPNALNGMLRYRILSQAPSTPSPNMF  162 (215)
T ss_dssp             TCCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCB--CSSCTTSTTTCCCCEEEECSSCCSSTTCE
T ss_pred             CCceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEE--eCCCCCCCCcEEEEEEecCCCCCCcCCeE
Confidence            9999999999999999999999999999999999999999999999999  8887  78999999988754      233


Q ss_pred             hhhc-cCCCCCC-CCcceEEEEEEEEEEecCcc
Q psy11062        237 TLKS-ELNSPLG-SNSFQLSILWYSIFLRTNTM  267 (281)
Q Consensus       237 ~l~~-~~~~~~~-~~~~~~~~~~y~~~~~~~~~  267 (281)
                      .++. .|...+. ...-.-....|+|.|+..++
T Consensus       163 ~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~  195 (215)
T 2qvi_A          163 TINNETGDIITVAAGLDREKVQQYTLIIQATDM  195 (215)
T ss_dssp             EECTTTCEEEECSCCCCTTTCSEEEEEEECCTT
T ss_pred             EEcCCCcEEEEecCCCCcccCCeEEEEEEEEEC
Confidence            3332 2221111 11111234679999998775

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=99.96  E-value=1.7e-28  Score=205.73  Aligned_cols=173  Identities=15%  Similarity=0.185  Sum_probs=145.5

Q ss_pred             EEEEeCCCCCC--ceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECC
Q psy11062         87 RLSVPESAALG--LPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQG  164 (281)
Q Consensus        87 ~~~v~En~~~g--t~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~  164 (281)
                      .+.|+||.+.|  ..++++. +|+|.|.+   +|+|.+++  ....|.|++.+|.|++.++||||....|.|.|.|+|++
T Consensus         6 ~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~~--~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g   79 (203)
T 3ppe_A            6 RMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGES--ANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRR   79 (203)
T ss_dssp             EEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEETT--BTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETT
T ss_pred             cEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecCC--CCCeEEEECCcCEEEECccccccccceEEEEEEEEECC
Confidence            57899999988  7888888 89998766   99999853  45689999999999999999999999999999999999


Q ss_pred             CC-CCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeec---CccccEEEEEeecCChhhhhc
Q psy11062        165 DP-PMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVE---GQCSLVCWSTLRLMTHSTLKS  240 (281)
Q Consensus       165 ~p-~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~---g~~~~~~~~~~~~~~~~~l~~  240 (281)
                      .| ++++++.|+|.|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+  |.|+   |.|+.+.|++....+.+.++.
T Consensus        80 ~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~--D~D~~~~g~n~~i~Y~i~~~~~~F~I~~  157 (203)
T 3ppe_A           80 NNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAE--DADDPTVAGHATVTYQIIKGNEYFTVDD  157 (203)
T ss_dssp             TTEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEE--CCSCTTSSSTTCEEEEEEESTTTEEECT
T ss_pred             CCCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEE--cCCCcCCCCceEEEEEEeCCCCcEEEeC
Confidence            86 67888999999999999999999999999999999999999999999  8884   889999999988777666664


Q ss_pred             cCCCCCC-CCcceEEEEEEEEEEecCcc
Q psy11062        241 ELNSPLG-SNSFQLSILWYSIFLRTNTM  267 (281)
Q Consensus       241 ~~~~~~~-~~~~~~~~~~y~~~~~~~~~  267 (281)
                      .|...+. ...-.-....|+|.|++.++
T Consensus       158 tG~i~~~~~~LD~E~~~~y~l~V~A~D~  185 (203)
T 3ppe_A          158 SGVIFTARADLDRESQSAYEIIVKAKDA  185 (203)
T ss_dssp             TSEEEESCSCCCTTTCSEEEEEEEEEET
T ss_pred             CeEEEECCcCCCcccCCEEEEEEEEEeC
Confidence            3433222 22222224468888887765

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.1e-29  Score=218.87  Aligned_cols=179  Identities=14%  Similarity=0.058  Sum_probs=142.5

Q ss_pred             eeccCcEEEEEeCCCCCCceEEEEEEEeCCCCC--CceEE------EEEeeCCCCCceeeEEeCceeEEEEceecCccCc
Q psy11062         80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD--NGKIR------YHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETS  151 (281)
Q Consensus        80 ~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~--~~~i~------y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~  151 (281)
                      .|.+..|.+.|+|++++|+.|+++.|+|+|.|.  +..+.      |++..+   ...+|.|++.+|.|++.++||||..
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~---~~~~F~Id~~tG~i~~~~~LDrE~~   78 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLH---ENNWIRIQEDTGLLYLQRSLDHSSW   78 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEE---ECCSEEECTTTCEEEESSCBCHHHH
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCC---CCCEEEECCCcEEEEECCcCChhHh
Confidence            588899999999999999999999999999854  34444      554442   3578999999999999999999999


Q ss_pred             ceE------------EEEEEEEECCCC--CCeEEEEEEEEEEeCCCCCCe----------eeCCceEEEEeCCCCCCcEE
Q psy11062        152 QRH------------TIVVSATDQGDP--PMSSNLTVLLEVQDVNDNPPV----------FERSEYFVSVSEALPAKSQV  207 (281)
Q Consensus       152 ~~y------------~l~V~a~D~~~p--~~~~~~~v~I~V~DvND~~P~----------f~~~~y~~~v~E~~~~gt~v  207 (281)
                      ..|            .|.|.|+|.+.|  ++++++.|+|+|.|+|||+|+          |.+..|.+.|+|+.++|+.|
T Consensus        79 ~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v  158 (246)
T 2x2u_A           79 EKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFH  158 (246)
T ss_dssp             HHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEEE
T ss_pred             hhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCcEE
Confidence            999            999999999987  678899999999999999999          99999999999999999999


Q ss_pred             EEEEeeEEEeecCccccEEEEEeecC-Chhhhhc-cCCCCCCCCcceEEEEEEEEEEe
Q psy11062        208 RTTCTPLYVLVEGQCSLVCWSTLRLM-THSTLKS-ELNSPLGSNSFQLSILWYSIFLR  263 (281)
Q Consensus       208 ~~v~A~~yd~d~g~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~y~~~~~  263 (281)
                      +++.|+  |.|.|.|+.++|++.... ..+.++. .|...+....-.-....|.|.|+
T Consensus       159 ~~v~A~--D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~  214 (246)
T 2x2u_A          159 QFRLLP--VQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAV  214 (246)
T ss_dssp             ECSCHH--HHHHCTTSCEEEEEESCTTSSEECCTTCCEEEESSCBCTTTCSEEEEEEE
T ss_pred             EEEEEE--cCCCCCCcEEEEEEccCCCCCEEEECCcCEEEeCCccCccccceEEEEEE
Confidence            999999  999999999999997662 3344431 23222222222223456888887

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=99.95  E-value=6.5e-29  Score=208.90  Aligned_cols=175  Identities=19%  Similarity=0.308  Sum_probs=141.2

Q ss_pred             EEEEeCCCCCC--ceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECC
Q psy11062         87 RLSVPESAALG--LPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQG  164 (281)
Q Consensus        87 ~~~v~En~~~g--t~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~  164 (281)
                      .+.|+||.+.|  +.++.+ |+|+|.| ++.++|+|.+++  ....|.|++.+|.|++.++||||....|.|.|+|+|++
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~~--~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~   81 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGDG--AGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRR   81 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSSS--BTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSS
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECCC--CCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECC
Confidence            46799998855  478888 8999998 678999998743  34689999999999999999999999999999999988


Q ss_pred             -CCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeec---CccccEEEEEeecCChhhhhc
Q psy11062        165 -DPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVE---GQCSLVCWSTLRLMTHSTLKS  240 (281)
Q Consensus       165 -~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~---g~~~~~~~~~~~~~~~~~l~~  240 (281)
                       .+++++++.|+|.|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+  |.|.   |.|+.+.|++....+.+.++.
T Consensus        82 ~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~--D~D~~~~g~n~~i~Y~i~~~~~~F~Id~  159 (207)
T 3lnd_A           82 TGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTAT--DADDPTYGNSAKVVYSILQGQPYFSVES  159 (207)
T ss_dssp             SCCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEE--CSSCTTSSSTTCCEEEEEESGGGEEECT
T ss_pred             CCCccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEE--eCCCCCCCCCcEEEEEEcCCCCCEEEcC
Confidence             4678889999999999999999999999999999999999999999999  8888   889999999988766555542


Q ss_pred             -cCCCCCC-CCcceEEEEEEEEEEecCcc
Q psy11062        241 -ELNSPLG-SNSFQLSILWYSIFLRTNTM  267 (281)
Q Consensus       241 -~~~~~~~-~~~~~~~~~~y~~~~~~~~~  267 (281)
                       .|...+. ...-.-....|+|.|++.++
T Consensus       160 ~tG~i~~~~~~lD~E~~~~y~l~V~A~D~  188 (207)
T 3lnd_A          160 ETGIIKTALLNMDRENREQYQVVIQAKDM  188 (207)
T ss_dssp             TTCEEEECCSSCCC--CCEEEEEEEEESG
T ss_pred             CCcEEEECcccCCcccCCEEEEEEEEEEC
Confidence             2333222 23333345678899887775

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=99.95  E-value=1.1e-27  Score=202.29  Aligned_cols=176  Identities=16%  Similarity=0.243  Sum_probs=143.3

Q ss_pred             EEEEeCCCC--CCceEEEEEEEeCCCCCCceEEEEEeeCCC--CCceeeEEeCceeEEEEceecCccCcceEEEEEEEEE
Q psy11062         87 RLSVPESAA--LGLPLYTVVARDKDSGDNGKIRYHLASGNF--GDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD  162 (281)
Q Consensus        87 ~~~v~En~~--~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~--~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D  162 (281)
                      .++|+||.+  .|+.++++.| |+|.  ++.++|+|.++..  +..++|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D   82 (213)
T 3qrb_A            6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS   82 (213)
T ss_dssp             EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEe
Confidence            688999998  6788999988 7774  7899999997432  2345899999999999999999999999999999999


Q ss_pred             CCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeecC---ccccEEEEEeecC------
Q psy11062        163 QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEG---QCSLVCWSTLRLM------  233 (281)
Q Consensus       163 ~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~g---~~~~~~~~~~~~~------  233 (281)
                      .+.+++++++.|+|.|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+  |.|.|   .|+.++|++....      
T Consensus        83 ~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~--D~D~~~~~~n~~i~Y~i~~~~~~~~~~  160 (213)
T 3qrb_A           83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSAT--DADDDVNTYNAAIAYTIVSQDPELPHK  160 (213)
T ss_dssp             TTSCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEE--CCSCTTTSSTTCCEEEEEEEESCCSCS
T ss_pred             CCCCcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEE--eCCCCCCCcCcEEEEEEccCCCCCCcC
Confidence            999989999999999999999999999999999999999999999999999  99998   8999999987643      


Q ss_pred             Chhhhhc-cCCCCCC-CCcceEEEEEEEEEEecCcc
Q psy11062        234 THSTLKS-ELNSPLG-SNSFQLSILWYSIFLRTNTM  267 (281)
Q Consensus       234 ~~~~l~~-~~~~~~~-~~~~~~~~~~y~~~~~~~~~  267 (281)
                      ..+.++. .|...+. ...-.-....|+|.|+..++
T Consensus       161 ~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~  196 (213)
T 3qrb_A          161 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADL  196 (213)
T ss_dssp             CSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETG
T ss_pred             CeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeC
Confidence            2344432 2222111 11111224468888887774

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=99.95  E-value=1.4e-27  Score=202.27  Aligned_cols=176  Identities=18%  Similarity=0.230  Sum_probs=142.8

Q ss_pred             EEEEeCCCCCC--ceEEEEEEEeCCCCCCceEEEEEeeCC--CCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEE
Q psy11062         87 RLSVPESAALG--LPLYTVVARDKDSGDNGKIRYHLASGN--FGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD  162 (281)
Q Consensus        87 ~~~v~En~~~g--t~v~~v~a~D~D~g~~~~i~y~l~~~~--~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D  162 (281)
                      .+.|+||.+.|  +.++++.|.|+|.    .++|+|.++.  .+....|.|++.+|.|++.++||||....|.|.|+|+|
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D   82 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD   82 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEC
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEE
Confidence            57899999988  7788898888774    6899998632  13458999999999999999999999999999999999


Q ss_pred             CCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEEeeEEEeec--CccccEEEEEeecCC------
Q psy11062        163 QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVE--GQCSLVCWSTLRLMT------  234 (281)
Q Consensus       163 ~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~A~~yd~d~--g~~~~~~~~~~~~~~------  234 (281)
                      .+.|++++++.|+|.|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+  |.|.  |.|+.++|++.....      
T Consensus        83 ~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~--D~D~~~g~n~~i~Y~i~~~~~~~~~~~  160 (218)
T 3k5r_A           83 ASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAF--DADDPATDNALLRYNIRQQTPDKPSPN  160 (218)
T ss_dssp             SSSCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCS--CSSSSCGGGGCEEEEEEEEESCCSCSC
T ss_pred             CCCCceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEE--eCCCCCCCCcEEEEEEecCCCCCCcCC
Confidence            999989999999999999999999999999999999999999999999999  8888  789999999876543      


Q ss_pred             hhhhhc-cCCCCCC---CCcceEE--EEEEEEEEecCcce
Q psy11062        235 HSTLKS-ELNSPLG---SNSFQLS--ILWYSIFLRTNTMQ  268 (281)
Q Consensus       235 ~~~l~~-~~~~~~~---~~~~~~~--~~~y~~~~~~~~~~  268 (281)
                      .+.++. .|...+.   ...-.-.  ...|+|.|+..++-
T Consensus       161 ~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~g  200 (218)
T 3k5r_A          161 MFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMA  200 (218)
T ss_dssp             SEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECS
T ss_pred             EEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECC
Confidence            244432 2321111   1111112  44788888876653

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.94  E-value=2.8e-27  Score=180.33  Aligned_cols=112  Identities=33%  Similarity=0.557  Sum_probs=103.2

Q ss_pred             EEEEecCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCC-CCceeeEEeCceeEEEEceecC
Q psy11062         69 VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNF-GDSRLFAVDQTSGHLSLSKHLD  147 (281)
Q Consensus        69 i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~-~~~~~F~id~~tG~i~~~~~LD  147 (281)
                      |.|.|+|||+|.|.+..|.+.|+||.++|+.++++.|+|+|.|.|+.++|+|....+ ....+|.|++.+|.|++.++||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD   81 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLD   81 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCC
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCC
Confidence            468999999999999999999999999999999999999999999999999986321 2467899999999999999999


Q ss_pred             ccCcceEEEEEEEEECCCCCCeEEEEEEEEEEeCC
Q psy11062        148 YETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVN  182 (281)
Q Consensus       148 ~E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~DvN  182 (281)
                      ||....|.|.|+|+|++.|+  ++++|+|+|+|+|
T Consensus        82 ~E~~~~y~l~V~A~D~g~~~--~~~~v~I~V~DvN  114 (114)
T 2ee0_A           82 REETAIHKVTVLASDGSSTP--ARATVTINVTDVN  114 (114)
T ss_dssp             TTTCSEEEEEEEEESSSSSC--EEEEEEEEEECCC
T ss_pred             cccCcEEEEEEEEEECCCCc--eEEEEEEEEEECC
Confidence            99999999999999999875  7899999999997

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=4.3e-25  Score=170.40  Aligned_cols=116  Identities=21%  Similarity=0.307  Sum_probs=106.0

Q ss_pred             cCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCC--CCceeeEEeCceeEEEEceecCccCc
Q psy11062         74 RNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNF--GDSRLFAVDQTSGHLSLSKHLDYETS  151 (281)
Q Consensus        74 vNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~--~~~~~F~id~~tG~i~~~~~LD~E~~  151 (281)
                      .+.|.|.|....|.+.+.|+.++|+.|+++. +|+|.|.|+.++|+|.++..  .....|.||+.+|.|++.++||||..
T Consensus         5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~   83 (123)
T 2yqg_A            5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREET   83 (123)
T ss_dssp             SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTB
T ss_pred             ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccC
Confidence            3678999999999988889999999999999 69999999999999997521  23578999999999999999999999


Q ss_pred             ceEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeC
Q psy11062        152 QRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER  190 (281)
Q Consensus       152 ~~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~  190 (281)
                      ..|.|.|.|+|++.|++++++.|.|.|+|+|||+|+|.+
T Consensus        84 ~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           84 PFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             SEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCC
T ss_pred             ceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCC
Confidence            999999999999999999999999999999999999975

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.90  E-value=1.8e-23  Score=179.37  Aligned_cols=178  Identities=17%  Similarity=0.182  Sum_probs=135.7

Q ss_pred             cEEEEEeCCCCCCceEEEEEE-EeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEc---eecCccCcceEEEEEEE
Q psy11062         85 TIRLSVPESAALGLPLYTVVA-RDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLS---KHLDYETSQRHTIVVSA  160 (281)
Q Consensus        85 ~~~~~v~En~~~gt~v~~v~a-~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~---~~LD~E~~~~y~l~V~a  160 (281)
                      .+.+.|+|++++|+.+..+.+ .|.|.+.++.++|+|.+   ....+|.|++.+|.+.+.   +.||||....|.+.+.+
T Consensus        21 ~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~---~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~   97 (242)
T 4apx_B           21 ATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKD---NVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQ   97 (242)
T ss_dssp             SEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEES---CGGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEE
T ss_pred             eEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEec---CCCceEEECCCCCEEEEEecCCceeccCCCceEEEEEE
Confidence            467889999999999876554 45557789999999987   356789999999999875   67999988777665555


Q ss_pred             EECCCC--CCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEE-----EEeeEEEeecCccccEEEEEeecC
Q psy11062        161 TDQGDP--PMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRT-----TCTPLYVLVEGQCSLVCWSTLRLM  233 (281)
Q Consensus       161 ~D~~~p--~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~-----v~A~~yd~d~g~~~~~~~~~~~~~  233 (281)
                      .++..+  ...+.+.|+|.|.|+|||+|.|.+..|.+.|+|+.++|+.|++     +.|+  |.|.|.||.++|++....
T Consensus        98 v~~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~--D~D~g~N~~v~Ysi~~~~  175 (242)
T 4apx_B           98 VQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGAT--DIDDGPNGQIEYVIQYNP  175 (242)
T ss_dssp             EEEEETTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEE--CCSSGGGGCEEEEEECCT
T ss_pred             EEeECCCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccc--cCCCCcCCceEEEEecCC
Confidence            553332  3567788999999999999999999999999999999999987     6788  999999999999987654


Q ss_pred             Ch------hhhh--ccCCCCCCCCcceEEEEEEEEEEecCcc
Q psy11062        234 TH------STLK--SELNSPLGSNSFQLSILWYSIFLRTNTM  267 (281)
Q Consensus       234 ~~------~~l~--~~~~~~~~~~~~~~~~~~y~~~~~~~~~  267 (281)
                      ..      +.++  ..|...+.+..-.-....|+|.|++.++
T Consensus       176 ~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~  217 (242)
T 4apx_B          176 EDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDR  217 (242)
T ss_dssp             TSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEEC
T ss_pred             CCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEEC
Confidence            32      2222  1244333332222234568888887664

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.87  E-value=9.2e-23  Score=154.22  Aligned_cols=103  Identities=25%  Similarity=0.395  Sum_probs=81.2

Q ss_pred             cEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCC--CCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEE
Q psy11062         85 TIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGN--FGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD  162 (281)
Q Consensus        85 ~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~--~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D  162 (281)
                      .|.++|+||+++|+.+..++. |.|.|.|+.++|+|.++.  ......|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         6 ~~~~~v~En~~~gt~~~v~~v-d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D   84 (110)
T 1ncg_A            6 IPPINLPENSRGPFPQELVRI-RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVD   84 (110)
T ss_dssp             CCCEEECSSCCCCSSEEEEEC-CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred             eeeEEEeCCCCCCCcEEEEEE-eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEEE
Confidence            457899999999995332222 788888999999999632  13467899999999999999999999999999999999


Q ss_pred             CCCCCCeEEEEEEEEEEeCCCCCCee
Q psy11062        163 QGDPPMSSNLTVLLEVQDVNDNPPVF  188 (281)
Q Consensus       163 ~~~p~~~~~~~v~I~V~DvND~~P~f  188 (281)
                      ++.|++++++.|+|.|+|+|||+|+|
T Consensus        85 ~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           85 INGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             TTSCBCSCCEEEEEEEC---------
T ss_pred             CCCCceeeEEEEEEEEEECCCCCCCC
Confidence            99999999999999999999999998

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=2e-21  Score=150.09  Aligned_cols=106  Identities=26%  Similarity=0.309  Sum_probs=90.9

Q ss_pred             CcEEEEEeCCCCCCceEEEEEEEeCCCCCCceE---EEEEeeCCCCCceeeEEeCceeEEEEceecCccCc----ceEEE
Q psy11062         84 TTIRLSVPESAALGLPLYTVVARDKDSGDNGKI---RYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETS----QRHTI  156 (281)
Q Consensus        84 ~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i---~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~----~~y~l  156 (281)
                      ..+.+.|+|+.++|+.|+++ |+|.|.+. +.+   +|+|..++  ...+|.||+.+|.|++.++||||..    ..|.|
T Consensus        11 ~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~~~--~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l   86 (125)
T 1wyj_A           11 ATITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILSKG--NKQLLQLEQKSGNLLLKEKLDREELCGSTNPCIL   86 (125)
T ss_dssp             CCCCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEECSS--SSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCB
T ss_pred             ceEEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEecCC--CCCeEEEECCccEEEECccccchhhcccCCcEEE
Confidence            45678899999999999999 89988764 334   89998753  4679999999999999999999998    99999


Q ss_pred             EEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCCceEEE
Q psy11062        157 VVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVS  196 (281)
Q Consensus       157 ~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~  196 (281)
                      .|+|.+.. | . ..+.|+|.|+|+|||+|+|.++.|.+.
T Consensus        87 ~v~a~~~~-p-~-~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           87 HFQVLLKS-P-V-QFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             CCEEEETT-T-T-EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EEEEEECC-C-C-eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            99999843 2 3 478999999999999999999988654

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.79  E-value=3.8e-19  Score=131.54  Aligned_cols=91  Identities=26%  Similarity=0.406  Sum_probs=82.8

Q ss_pred             EEEEEeCCCC--CCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEEC
Q psy11062         86 IRLSVPESAA--LGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQ  163 (281)
Q Consensus        86 ~~~~v~En~~--~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~  163 (281)
                      ..+.|+||.+  .|+.++++. +|+|.| |+.++|+|.++.  ....|.||+.+|.|++.++||||+...|.|+|+|+|.
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~--~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~   81 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEG--AGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDR   81 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETT--BTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCC--CCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEEC
Confidence            4678999976  689999999 999999 999999998743  3468999999999999999999999999999999999


Q ss_pred             C-CCCCeEEEEEEEEEEe
Q psy11062        164 G-DPPMSSNLTVLLEVQD  180 (281)
Q Consensus       164 ~-~p~~~~~~~v~I~V~D  180 (281)
                      | .|++++++.|.|.|.|
T Consensus        82 G~~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           82 RTGRPMEPESEFIIKIQD   99 (99)
T ss_dssp             TTCCBSSCCEEEEEEEEC
T ss_pred             CCCCCcceeEEEEEEEeC
Confidence            9 5889999999999987

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.78  E-value=4.4e-19  Score=131.02  Aligned_cols=91  Identities=24%  Similarity=0.372  Sum_probs=80.6

Q ss_pred             EEEEEeCCCC--CCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEEC
Q psy11062         86 IRLSVPESAA--LGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQ  163 (281)
Q Consensus        86 ~~~~v~En~~--~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~  163 (281)
                      +.+.|+||.+  .|+.++++. +|+|.| |+.++|+|.++.  ....|.||+.+|.|++.++||||+...|.|+|+|+|+
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~--~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~   80 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDG--AGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDF   80 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETT--BTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCC--CCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEEC
Confidence            4678999985  899999997 999999 999999998742  3458999999999999999999999999999999999


Q ss_pred             CC-CCCeEEEEEEEEEEe
Q psy11062        164 GD-PPMSSNLTVLLEVQD  180 (281)
Q Consensus       164 ~~-p~~~~~~~v~I~V~D  180 (281)
                      |. |++++++.|+|.|.|
T Consensus        81 g~~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           81 ETNKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             TTCCBSSCCEEEEEEECC
T ss_pred             CCCCCcceeEEEEEEEEC
Confidence            97 788999999999987

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.76  E-value=2.4e-18  Score=127.31  Aligned_cols=90  Identities=22%  Similarity=0.328  Sum_probs=81.7

Q ss_pred             EEEEeCCCCC--CceEEEEEEEeCCCCCCceEEEEEeeC--CCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEE
Q psy11062         87 RLSVPESAAL--GLPLYTVVARDKDSGDNGKIRYHLASG--NFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD  162 (281)
Q Consensus        87 ~~~v~En~~~--gt~v~~v~a~D~D~g~~~~i~y~l~~~--~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D  162 (281)
                      .+.|+||.++  |+.++++.|+|+|.    .++|+|.+.  ..+....|.||+.+|.|++.++||||....|.|.|+|+|
T Consensus         6 ~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D   81 (99)
T 3k6d_A            6 SISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTD   81 (99)
T ss_dssp             CEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred             cEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEEE
Confidence            5789999999  99999999999996    699999852  123467899999999999999999999999999999999


Q ss_pred             CCCCCCeEEEEEEEEEEe
Q psy11062        163 QGDPPMSSNLTVLLEVQD  180 (281)
Q Consensus       163 ~~~p~~~~~~~v~I~V~D  180 (281)
                      +|.|++++.+.|+|+|+|
T Consensus        82 ~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           82 ENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             TTCCEEEEEEEEEEEEEC
T ss_pred             CCCCceeeEEEEEEEEEC
Confidence            999999999999999987

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.75  E-value=6.8e-18  Score=125.13  Aligned_cols=90  Identities=20%  Similarity=0.317  Sum_probs=81.1

Q ss_pred             EEEEeCCCCC--CceEEEEEEEeCCCCCCceEEEEEeeCC--CCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEE
Q psy11062         87 RLSVPESAAL--GLPLYTVVARDKDSGDNGKIRYHLASGN--FGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD  162 (281)
Q Consensus        87 ~~~v~En~~~--gt~v~~v~a~D~D~g~~~~i~y~l~~~~--~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D  162 (281)
                      .+.|+||.+.  |+.+++|.|+|+|.    .++|+|.+..  ......|.||+.+|.|++.++||||+...|.|.|+|+|
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D   82 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD   82 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEC
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEE
Confidence            4789999998  89999999999996    5899998631  12457899999999999999999999999999999999


Q ss_pred             CCCCCCeEEEEEEEEEEe
Q psy11062        163 QGDPPMSSNLTVLLEVQD  180 (281)
Q Consensus       163 ~~~p~~~~~~~v~I~V~D  180 (281)
                      .|.|++++.+.|+|.|+|
T Consensus        83 ~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           83 ASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             TTCCEEEEEEEEEEEEEC
T ss_pred             CCCCcccceEEEEEEEEC
Confidence            999999999999999987

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.74  E-value=1.2e-17  Score=123.65  Aligned_cols=90  Identities=18%  Similarity=0.300  Sum_probs=80.8

Q ss_pred             EEEEeCCCCCC--ceEEEEEEEeCCCCCCceEEEEEeeCC--CCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEE
Q psy11062         87 RLSVPESAALG--LPLYTVVARDKDSGDNGKIRYHLASGN--FGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD  162 (281)
Q Consensus        87 ~~~v~En~~~g--t~v~~v~a~D~D~g~~~~i~y~l~~~~--~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D  162 (281)
                      .+.|+||.+.|  +.+++|.|+|+|.    .++|+|.+..  ......|.||+.+|.|++.++||||+...|.|.|+|+|
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D   81 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD   81 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEE
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEE
Confidence            46799999986  8899999999996    7999998631  12357899999999999999999999999999999999


Q ss_pred             CCCCCCeEEEEEEEEEEe
Q psy11062        163 QGDPPMSSNLTVLLEVQD  180 (281)
Q Consensus       163 ~~~p~~~~~~~v~I~V~D  180 (281)
                      .|.|++++.+.|.|.|+|
T Consensus        82 ~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           82 LSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             TTSCEEEEEEEEEEEEEC
T ss_pred             CCCCceeeeEEEEEEEEC
Confidence            999999999999999987

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.73  E-value=6.6e-18  Score=126.29  Aligned_cols=92  Identities=20%  Similarity=0.369  Sum_probs=80.2

Q ss_pred             EEEEeCCCC--CCceEEEEEEEeCCCCCCceEEEEEeeCCCC--CceeeEEeCceeEEEEceecCccCcceEEEEEEEEE
Q psy11062         87 RLSVPESAA--LGLPLYTVVARDKDSGDNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD  162 (281)
Q Consensus        87 ~~~v~En~~--~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D  162 (281)
                      .+.|+||.+  .|+.++++.| |  .|.|+.++|+|.+++.+  ....|.||+.+|.|++.++||||+...|.|+|+|+|
T Consensus        10 ~~~V~En~~~~~~~~v~~v~A-d--~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D   86 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKS-N--KDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVS   86 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEE-G--GGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred             CEEEeCCCCCCCCcEEEEEEC-C--CCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEE
Confidence            467999998  5789999999 3  35699999999985421  146899999999999999999999999999999999


Q ss_pred             CCCCCCeEEEEEEEEEEeC
Q psy11062        163 QGDPPMSSNLTVLLEVQDV  181 (281)
Q Consensus       163 ~~~p~~~~~~~v~I~V~Dv  181 (281)
                      .|.|++++++.|+|.|+|+
T Consensus        87 ~g~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           87 SNGNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             TTSCBSSCCEEEEEEEEC-
T ss_pred             CCCCceeeEEEEEEEEEeC
Confidence            9999999999999999996

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.67  E-value=5.9e-17  Score=122.17  Aligned_cols=78  Identities=24%  Similarity=0.417  Sum_probs=60.5

Q ss_pred             EEecCCCcEEEEEEeC----CCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC-CCCceeEEEEEEEEEecCCCC
Q psy11062          4 LLLDQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKVTIEDRNDNA   78 (281)
Q Consensus         4 ~d~d~~~~l~Y~i~~g----~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i~V~dvNd~~   78 (281)
                      .|.|.|+.|+|+|.++    +..++|+|++.+|.|+++++||||+.+.|.|.|.|+|+ .+++++++.|.|.|.|+|||+
T Consensus        28 ~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~  107 (110)
T 1ncg_A           28 SGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNR  107 (110)
T ss_dssp             CGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTSCBCSCCEEEEEEEC------
T ss_pred             CCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEEECCCCceeeEEEEEEEEEECCCCC
Confidence            3556788999999863    45689999999999999999999999999999999974 556788999999999999999


Q ss_pred             Cee
Q psy11062         79 PEF   81 (281)
Q Consensus        79 P~f   81 (281)
                      |.|
T Consensus       108 P~F  110 (110)
T 1ncg_A          108 PEF  110 (110)
T ss_dssp             ---
T ss_pred             CCC
Confidence            987

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=1.2e-16  Score=122.88  Aligned_cols=76  Identities=26%  Similarity=0.397  Sum_probs=68.2

Q ss_pred             CCCcEEEEEEeC----CCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC-CCCceeEEEEEEEEEecCCCCCeec
Q psy11062          8 QSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKVTIEDRNDNAPEFE   82 (281)
Q Consensus         8 ~~~~l~Y~i~~g----~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i~V~dvNd~~P~f~   82 (281)
                      .|+.|+|+|.++    +..++|.|++.+|.|+++++||||+.+.|.|.|.|+|+ .+++++++.|.|.|.|+|||+|.|.
T Consensus        42 ~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~  121 (123)
T 2yqg_A           42 RGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFT  121 (123)
T ss_dssp             HTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTBSEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCC
T ss_pred             CCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccCceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeC
Confidence            467999999875    34579999999999999999999999999999999974 5567889999999999999999997


Q ss_pred             c
Q psy11062         83 S   83 (281)
Q Consensus        83 ~   83 (281)
                      +
T Consensus       122 ~  122 (123)
T 2yqg_A          122 Q  122 (123)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=5.3e-16  Score=118.58  Aligned_cols=79  Identities=30%  Similarity=0.471  Sum_probs=68.8

Q ss_pred             CEEEEecC--CCcEEEEEEeCCC--CceEEEECCccEEEECcCCCceeccEEEEEEEEEe-CCCCceeEEEEEEEEEecC
Q psy11062          1 MKILLLDQ--SNPIRYTIHSGDP--EGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRN   75 (281)
Q Consensus         1 ~~~~d~d~--~~~l~Y~i~~g~~--~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i~V~dvN   75 (281)
                      ++|+|.|.  |+.|+|+|.++..  .++|.|++.+|.|+++++||||....|.|.|.|+| |.+++++++.|+|.|.|+|
T Consensus        36 v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvN  115 (119)
T 2yst_A           36 LRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDEN  115 (119)
T ss_dssp             CCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEECCSBTTBCCEEEEEEEEEECST
T ss_pred             EEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEecc
Confidence            35666664  6899999987553  36899999999999999999999999999999996 4566789999999999999


Q ss_pred             CCCC
Q psy11062         76 DNAP   79 (281)
Q Consensus        76 d~~P   79 (281)
                      ||+|
T Consensus       116 Dn~P  119 (119)
T 2yst_A          116 DNVP  119 (119)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            9998

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=1.1e-16  Score=123.40  Aligned_cols=75  Identities=27%  Similarity=0.343  Sum_probs=67.2

Q ss_pred             EEEEEeCCCCceEEEECCccEEEECcCCCceec----cEEEEEEEEEeCCCCceeEEEEEEEEEecCCCCCeeccCcEEE
Q psy11062         13 RYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVT----GVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRL   88 (281)
Q Consensus        13 ~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~----~~~~l~v~a~dg~~~~~~~~~v~i~V~dvNd~~P~f~~~~~~~   88 (281)
                      .|+|++++..++|.||+.+|.|+++++||||+.    ..|.|.|.|.++.| . ..+.|.|.|.|+|||+|.|.+..|.+
T Consensus        45 ~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v~a~~~~p-~-~~~~V~I~V~DvNDN~P~F~~~~y~v  122 (125)
T 1wyj_A           45 GAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSP-V-QFIQGEIQLQDVNDHAPEFMEDESGP  122 (125)
T ss_dssp             TCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCCEEEETTT-T-EEECCCEEECCCCCCCCCCCCCCCCC
T ss_pred             EEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEEEEEEECCC-C-eEEEEEEEEEEccCCCCcCCCcEEEE
Confidence            899998777789999999999999999999999    89999999997654 3 57899999999999999999988765


Q ss_pred             E
Q psy11062         89 S   89 (281)
Q Consensus        89 ~   89 (281)
                      +
T Consensus       123 s  123 (125)
T 1wyj_A          123 S  123 (125)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.52  E-value=1.6e-15  Score=112.84  Aligned_cols=95  Identities=26%  Similarity=0.350  Sum_probs=74.6

Q ss_pred             CcEEEEEeCCCCCCceEEEEEEEeCCCCCC--ceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCc----ceEEEE
Q psy11062         84 TTIRLSVPESAALGLPLYTVVARDKDSGDN--GKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETS----QRHTIV  157 (281)
Q Consensus        84 ~~~~~~v~En~~~gt~v~~v~a~D~D~g~~--~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~----~~y~l~  157 (281)
                      ..+.++|+|+.++|+.|+.+ |.|+|.+.+  ..++|+|..++  ...+|.||+.+|.|++.++||||..    ..|.+.
T Consensus         3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~--~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~   79 (103)
T 1wuz_A            3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKD--RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIH   79 (103)
T ss_dssp             CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSS--CSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEE
T ss_pred             eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCC--CccEEEEECCeEEEEECCcCccccccCCCCcEEEE
Confidence            35678999999999999999 999886432  35789998653  4679999999999999999999975    234444


Q ss_pred             EEEEECCCCCCeEEEEEEEEEEeCCCC
Q psy11062        158 VSATDQGDPPMSSNLTVLLEVQDVNDN  184 (281)
Q Consensus       158 V~a~D~~~p~~~~~~~v~I~V~DvND~  184 (281)
                      ++|... .| . ..+.|.|.|+|+|||
T Consensus        80 ~~v~~~-~p-~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           80 LEVIVD-RP-L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEEEET-TT-T-EEEEEEEEEECCSCC
T ss_pred             EEEEEC-CC-C-EEEEEEEEEEEcCCC
Confidence            444443 33 3 478999999999997

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.45  E-value=2.1e-13  Score=100.59  Aligned_cols=70  Identities=27%  Similarity=0.373  Sum_probs=61.5

Q ss_pred             EEecC-CCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCC--CCceeEEEEEEEEEe
Q psy11062          4 LLLDQ-SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS--PPLYSYAQVKVTIED   73 (281)
Q Consensus         4 ~d~d~-~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~--~~~~~~~~v~i~V~d   73 (281)
                      +|.|. |++|.|+|.++...+.|.||+.+|.|++.++||||+.+.|.|+|.|+|+.  +++++++.|.|.|.|
T Consensus        27 ~D~D~gNg~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           27 SDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD   99 (99)
T ss_dssp             BTTCCSSSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCBSSCCEEEEEEEEC
T ss_pred             ECCCCCCCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCCCCCcceeEEEEEEEeC
Confidence            44454 78999999876666789999999999999999999999999999999753  678899999999986

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.45  E-value=2e-13  Score=101.85  Aligned_cols=72  Identities=22%  Similarity=0.331  Sum_probs=62.3

Q ss_pred             EEEEecCCCcEEEEEEeCCC----CceEEEECCccEEEECcCCCceeccEEEEEEEEEe-CCCCceeEEEEEEEEEec
Q psy11062          2 KILLLDQSNPIRYTIHSGDP----EGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDR   74 (281)
Q Consensus         2 ~~~d~d~~~~l~Y~i~~g~~----~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i~V~dv   74 (281)
                      +| |.+.|+.|+|+|.+++.    .++|.||+.+|.|++.++||||+...|.|+|.|+| |.+++++++.|.|.|.|+
T Consensus        29 ~A-d~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           29 KS-NKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             EE-GGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTSCBSSCCEEEEEEEEC-
T ss_pred             EC-CCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEECCCCceeeEEEEEEEEEeC
Confidence            44 56789999999987543    46899999999999999999999999999999996 556778899999999985

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.40  E-value=7e-13  Score=97.54  Aligned_cols=70  Identities=26%  Similarity=0.358  Sum_probs=59.0

Q ss_pred             EEecC-CCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCC--CCceeEEEEEEEEEe
Q psy11062          4 LLLDQ-SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS--PPLYSYAQVKVTIED   73 (281)
Q Consensus         4 ~d~d~-~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~--~~~~~~~~v~i~V~d   73 (281)
                      +|.|. |+.|+|+|.++...++|+||+.+|.|++.++||||+.+.|.|+|.|+|+.  +++++++.|.|.|.|
T Consensus        26 ~D~D~gN~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           26 TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             BCCCCC--CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCBSSCCEEEEEEECC
T ss_pred             ECCCCCCCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCCCCCcceeEEEEEEEEC
Confidence            44454 68999999876555689999999999999999999999999999999754  568889999999976

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.6e-13  Score=103.91  Aligned_cols=74  Identities=31%  Similarity=0.433  Sum_probs=62.5

Q ss_pred             CEEEEecC--CCcEEEEEEeC---CCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCCCCceeEEEEEEEEEecC
Q psy11062          1 MKILLLDQ--SNPIRYTIHSG---DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRN   75 (281)
Q Consensus         1 ~~~~d~d~--~~~l~Y~i~~g---~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~~~~~~~~~v~i~V~dvN   75 (281)
                      ++|+|.|.  |+.|+|+|.++   +..++|+|++.+|.|+++++||||....|.|.|.|+|+..+. ++++|+|.|.|+|
T Consensus        36 v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~~~-~~~~v~I~V~DvN  114 (114)
T 2ee0_A           36 LHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTP-ARATVTINVTDVN  114 (114)
T ss_dssp             CCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEEESSSSSC-EEEEEEEEEECCC
T ss_pred             EEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCCcccCcEEEEEEEEEECCCCc-eEEEEEEEEEECC
Confidence            35666664  78999999753   345789999999999999999999999999999999765433 7889999999998

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.38  E-value=1.1e-12  Score=96.63  Aligned_cols=72  Identities=17%  Similarity=0.363  Sum_probs=60.6

Q ss_pred             EEEEecCCCcEEEEEEe----CCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC-CCCceeEEEEEEEEEe
Q psy11062          2 KILLLDQSNPIRYTIHS----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKVTIED   73 (281)
Q Consensus         2 ~~~d~d~~~~l~Y~i~~----g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i~V~d   73 (281)
                      ++.++|.+..|+|+|.+    +++.+.|.||+.+|.|++.++||||+...|.|.|.|+|+ .+++++++.|.|.|.|
T Consensus        23 ~V~A~D~D~~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           23 KVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             ECEETTCCSSEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEETTSCEEEEEEEEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEECCCCceeeeEEEEEEEEC
Confidence            34455555599999975    344579999999999999999999999999999999964 5567889999999987

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.37  E-value=1.5e-12  Score=96.09  Aligned_cols=72  Identities=24%  Similarity=0.421  Sum_probs=60.9

Q ss_pred             EEEEecCCCcEEEEEEe----CCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC-CCCceeEEEEEEEEEe
Q psy11062          2 KILLLDQSNPIRYTIHS----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKVTIED   73 (281)
Q Consensus         2 ~~~d~d~~~~l~Y~i~~----g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i~V~d   73 (281)
                      ++.++|.+..++|+|.+    +++.+.|.||+.+|.|++.++||||+...|.|.|.|.|+ .+++++++.|.|.|.|
T Consensus        24 ~V~A~D~D~~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           24 KVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             ECEETTCCTTCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEECCCCcccceEEEEEEEEC
Confidence            34456665699999975    345589999999999999999999999999999999964 5667889999999987

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.36  E-value=1.3e-12  Score=96.38  Aligned_cols=71  Identities=15%  Similarity=0.351  Sum_probs=60.4

Q ss_pred             EEEecCCCcEEEEEEe----CCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeC-CCCceeEEEEEEEEEe
Q psy11062          3 ILLLDQSNPIRYTIHS----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKVTIED   73 (281)
Q Consensus         3 ~~d~d~~~~l~Y~i~~----g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i~V~d   73 (281)
                      +.++|.+..++|+|.+    +++.+.|.||+.+|.|++.++||||+...|.|.|.|+|+ .+++++++.|.|.|.|
T Consensus        24 v~A~D~D~~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           24 VVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             CBCSSCCTTCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             EEEECCCCcEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEEECCCCceeeEEEEEEEEEC
Confidence            4455666699999974    445689999999999999999999999999999999975 4567788999999986

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.09  E-value=2.4e-11  Score=90.15  Aligned_cols=65  Identities=20%  Similarity=0.320  Sum_probs=52.1

Q ss_pred             cEEEEEEeCCCCceEEEECCccEEEECcCCCceecc----EEEEEEEEEeCCCCceeEEEEEEEEEecCCC
Q psy11062         11 PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTG----VLLLSVQASSGSPPLYSYAQVKVTIEDRNDN   77 (281)
Q Consensus        11 ~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~----~~~l~v~a~dg~~~~~~~~~v~i~V~dvNd~   77 (281)
                      .+.|+|.+++...+|.||+.+|.|+++++||||+.+    .+.+.+.+..+.|.  ..+.|.|.|.|+|||
T Consensus        35 ~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~v~~~~p~--~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           35 PRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPL--QVFHVEVEVRDINDN  103 (103)
T ss_dssp             TTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEEEEETTTT--EEEEEEEEEECCSCC
T ss_pred             cEEEEEEeCCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEEEEECCCC--EEEEEEEEEEEcCCC
Confidence            589999988778899999999999999999999974    33444444434443  478999999999997

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=92.78  E-value=0.51  Score=42.96  Aligned_cols=69  Identities=16%  Similarity=0.255  Sum_probs=47.5

Q ss_pred             EeCCCCCCceEEEEEeeCCCC--CceeeEEe-CceeEEEEceecCccCcceEEEEEEEEECCCCCCeEEEEEEEEE
Q psy11062        106 RDKDSGDNGKIRYHLASGNFG--DSRLFAVD-QTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEV  178 (281)
Q Consensus       106 ~D~D~g~~~~i~y~l~~~~~~--~~~~F~id-~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V  178 (281)
                      +|+|   +..++|+...-...  ......+. ..+..+...-+-+ +....|.|.++|+|.+.|..++...|.|+|
T Consensus       365 sDPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~-~~~~tl~f~LtVTD~~~p~lTs~~rViVtV  436 (437)
T 2yhg_A          365 SDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN-AGGKDIHILLTLRDNGSPNLYAYRRVVINV  436 (437)
T ss_dssp             BCTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT-CTTCEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred             eCCC---CCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCC-CCCcEEEEEEEEEeCCCCCccEEeEEEEEe
Confidence            4888   55688888753211  11245553 3445666655544 457889999999999988899998888887

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=90.35  E-value=1.9  Score=33.62  Aligned_cols=81  Identities=19%  Similarity=0.297  Sum_probs=59.0

Q ss_pred             CCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcceEE
Q psy11062         76 DNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHT  155 (281)
Q Consensus        76 d~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~  155 (281)
                      .+.|-|.+..|...++-+...|..+++|.-.|=.  .+..+.|.-..     ..-|.|++ .|.|++.+++..-... -.
T Consensus        31 ~C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~--g~~~~~~~ssD-----p~dFkV~~-DGtVya~r~v~L~~~~-~~  101 (159)
T 1op4_A           31 LCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN--RKRKVQYESSE-----PADFKVDE-DGTVYAVRSFPLTAEQ-AK  101 (159)
T ss_dssp             CCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCS--SCCCEEEECCC-----SSEEEEET-TTEEEEESCCSCSSSC-EE
T ss_pred             cccCCcCcceeEEeccccccCCceeceeecccCC--CCCceeEEcCC-----CCCeEEeC-CCcEEEecceeecCCC-cE
Confidence            4579999999977788888899999988766654  34456665543     22699985 5999999987543322 38


Q ss_pred             EEEEEEECCC
Q psy11062        156 IVVSATDQGD  165 (281)
Q Consensus       156 l~V~a~D~~~  165 (281)
                      |.|.|.|...
T Consensus       102 F~V~a~D~~t  111 (159)
T 1op4_A          102 FLIYAQDKET  111 (159)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEEcCCC
Confidence            8899999654

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=90.23  E-value=6  Score=31.54  Aligned_cols=117  Identities=19%  Similarity=0.193  Sum_probs=62.0

Q ss_pred             ccEEEEEEEEEeCCCCceeEEEEEEEEEecCCCCCeeccCcEEEEEeCCCC---CC-ceEEEEEEEeCCCCCCceEEEEE
Q psy11062         45 TGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAA---LG-LPLYTVVARDKDSGDNGKIRYHL  120 (281)
Q Consensus        45 ~~~~~l~v~a~dg~~~~~~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~---~g-t~v~~v~a~D~D~g~~~~i~y~l  120 (281)
                      ...|.|.++|.|..+.......+.|.|.+  ..+|...     +.-+.+..   .| ..-....|.|.|.+ =.++.|.+
T Consensus        60 ~G~htlta~A~D~aGn~s~s~~v~vtV~~--~~~Ptv~-----itsP~~g~~~~~~~~vtl~~~AsD~~g~-V~~Ve~~~  131 (190)
T 3pdd_A           60 VGAYNLKAVAVLSDGRRIESPVTPVLVKV--IVKPTVK-----LTAPKSNVVAYGNEFLKITATASDSDGK-ISRVDFLV  131 (190)
T ss_dssp             SEEEEEEEEEEETTSCEEECCCEEEEEEC--CCCCEEE-----EEECCTTCCCBTTSEEEEEEEEECSSSC-EEEEEEEE
T ss_pred             CccEEEEEEEEECCCCEeeecceeEEecc--CCCCcee-----ecCCCCCcEEecCCeEEEEEEEECCCCc-EEEEEEEE
Confidence            45899999999866544333457777766  4467642     33344422   23 34456677776621 12344444


Q ss_pred             eeCCCCCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECCCCCCeEEEEEEEEEEe
Q psy11062        121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD  180 (281)
Q Consensus       121 ~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~D  180 (281)
                      .+      ....-+.... .......   ..+.|.|+++|+|..+.. +....|+|.|.+
T Consensus       132 dg------~~v~t~t~~~-y~~~~~~---~~G~~tl~a~A~D~aGn~-s~s~~vtvtv~~  180 (190)
T 3pdd_A          132 DG------EVIGSDREAP-YEYEWKA---VEGNHEISVIAYDDDDAA-STPDSVKIFVKQ  180 (190)
T ss_dssp             TT------EEEEEECSSS-EEEEEEC---CSEEEEEEEEEEETTCCB-CCCEEEEEEEBC
T ss_pred             CC------EEEecccCCC-EEEEEec---CCeeEEEEEEEEECCCCE-EecceEEEEECC
Confidence            32      1121121111 1111111   567899999999987642 234455555543

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=89.49  E-value=9.5  Score=32.78  Aligned_cols=127  Identities=16%  Similarity=0.213  Sum_probs=64.2

Q ss_pred             CCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEc-----e-----
Q psy11062         75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLS-----K-----  144 (281)
Q Consensus        75 Nd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~-----~-----  144 (281)
                      +|++..|....-...|.|+.  |+....|.-+. +......+.|....|......-|.  +.+|.|...     +     
T Consensus         6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV~R~g-~~~~~vtV~y~T~~GTA~ag~Dy~--~~~gtl~F~~Get~kti~V~   80 (298)
T 3rb5_A            6 ADDPIRMYFEPGHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGTASAGTDFV--GRKGLLSFPPGVDEQRFRIE   80 (298)
T ss_dssp             -----CEEESSSEEEEETTS--CCEECCEEECS-CCSSCEEEEEEEEESSSCBTTTBC--CCEEEEEECTTCCEECCEEC
T ss_pred             CCCceEEEEeCCEEEEecCc--eEEEEEEEEEC-CCCccEEEEEEeeCCccCCCCCcc--ccceEEEECCCceEEEEEEE
Confidence            45666666555567799985  56555554433 444455788887765432221221  123443332     1     


Q ss_pred             ec---CccCcceEEEEEEEEECC-CCCCeEEEEEEEEEEeCCCCCCeeeCCceEEEEeCCCCCCcEEEEEE
Q psy11062        145 HL---DYETSQRHTIVVSATDQG-DPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTC  211 (281)
Q Consensus       145 ~L---D~E~~~~y~l~V~a~D~~-~p~~~~~~~v~I~V~DvND~~P~f~~~~y~~~v~E~~~~gt~v~~v~  211 (281)
                      -+   -+|....|.+.+  ++.. +.........+|.|.| ||++|.|.-..-...|.|+.  |...++|.
T Consensus        81 I~dD~~~E~dEtF~v~L--s~p~~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~  146 (298)
T 3rb5_A           81 VIDDDVFEEDECFYIRL--FNPSEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVM  146 (298)
T ss_dssp             BCCCSSCCCCEEEEEEE--ECCCTTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEE
T ss_pred             EeCCCCccCcEEEEEEE--eCCCCCcEECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEE
Confidence            11   234445555544  4431 1122222345566677 57789876554467888985  55555554

>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}

Probab=82.39  E-value=3  Score=29.93  Aligned_cols=45  Identities=9%  Similarity=0.053  Sum_probs=35.1

Q ss_pred             EEceecCccCcceEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCe
Q psy11062        141 SLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPV  187 (281)
Q Consensus       141 ~~~~~LD~E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~  187 (281)
                      .+.+..|..+.+.|.++..++|..+  ..++++.+|.|.+..+..|.
T Consensus        48 ~V~g~Vdt~k~G~Y~VtY~VtDs~G--n~~t~trtVtV~~~~e~~~~   92 (103)
T 2kpn_A           48 KVDGEVDTTKAGTYVLTYTVTDSKG--HEVTAKQTVTVKVREEVKND   92 (103)
T ss_dssp             EEESCCCSSSCEEEEEEEEEECTTS--CEEEEEEEEEEECSSCCCCC
T ss_pred             EEeCcccCCCceEEEEEEEEEcCCC--CEEEEEEEEEEeCCCcccCC
Confidence            3345678778899999999999877  57788888999887665443

>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.74  E-value=3.5  Score=29.34  Aligned_cols=32  Identities=13%  Similarity=0.202  Sum_probs=27.2

Q ss_pred             CcceEEEEEEEEECCCCCCeEEEEEEEEEEeCCC
Q psy11062        150 TSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVND  183 (281)
Q Consensus       150 ~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND  183 (281)
                      ....|.|++.|+|..+  .+++..++|.|...++
T Consensus        67 ~~G~y~f~LTVtD~~G--~s~s~~v~VtV~~~~~   98 (102)
T 2yrl_A           67 QVGTYVFTLTVKDERN--LQSQSSVNVIVKEESG   98 (102)
T ss_dssp             CSSEEEEEEEEEBTTC--CEEEEEEEEEEECCSS
T ss_pred             CCeEEEEEEEEEeCCC--CEEEeEEEEEEcCCCC
Confidence            5679999999999986  6888999999988655

>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0

Probab=80.40  E-value=15  Score=27.51  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             CCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCC
Q psy11062         77 NAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGN  124 (281)
Q Consensus        77 ~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~  124 (281)
                      +.+.+....-...|.|+.  |+....|.-.. +......+.|....|.
T Consensus         3 ~~~~i~F~~~~y~V~E~~--g~~~v~V~R~g-~~~~~v~V~y~t~~gT   47 (137)
T 3ead_A            3 DPIRMYFEPGHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGT   47 (137)
T ss_dssp             --CEEEESSCEEEEEGGG--CEEEEEEEEES-CCSSCEEEEEEEECSS
T ss_pred             CCEEEEEcCCEEEEECCC--eEEEEEEEEEC-CCCceEEEEEEeECCC
Confidence            344444344466788875  55555555443 4334557888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	2e-19
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	1e-07
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	0.004
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	7e-18
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	4e-07
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	1e-17
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	1e-04
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	4e-04
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	4e-17
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	1e-07
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	6e-16
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	1e-04
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	3e-04
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	7e-15
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	1e-06
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	1e-14
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	1e-04
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	5e-14
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	8e-04
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	5e-11
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	2e-10

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 76  DNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQ 135
           + AP F     R+ V E  + G  + ++VA+D D     K+ Y + +          V++
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR---WLTVNK 57

Query: 136 TSGHLSLSKHLDYETSQ----RHTIVVSATDQGDPPMSSNLTVLLEVQDV 181
            +G ++ + +LD E+       +T+++  TD G    +   T++L V DV
Sbjct: 58  DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 5/69 (7%)

Query: 10  NPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEV----TGVLLLSVQAS-SGSPPLYSY 64
                     DP  + T++   G++     LD E          + +  +  G       
Sbjct: 38  IQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGT 97

Query: 65  AQVKVTIED 73
             + + + D
Sbjct: 98  GTLILHVLD 106

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 183 DNPPVFERSEYFVSVSEALPAKSQVRTTCT 212
           +  P F  +   V VSE L    ++ +   
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVA 30

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 7e-18
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 79  PEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDS--RLFAVDQT 136
           P        +S PE+     P   +V    +    GK+ Y +           +F +++ 
Sbjct: 1   PLGSWVIPPISCPENEKGPFPK-NLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59

Query: 137 SGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           +G L +++ LD E    +T+   A       +   + +L+ V D
Sbjct: 60  TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 4e-07
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 7   DQSNPIRYTIHS----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D+   + Y+I        P G F ++  TG ++    LD E      L   A  S    +
Sbjct: 32  DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAV 91

Query: 62  YSYAQVKVTIED 73
               ++ +T+ D
Sbjct: 92  EDPMEILITVTD 103

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (182), Expect = 1e-17
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 75  NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSR 129
           NDN PEF       SV E A  G  +  V A D D      N  I Y + S +       
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60

Query: 130 LFAVDQTSGHLSLSKHL-DYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           +F V++ +G +S+     D E+   +T+VV A D     +S+    ++ V+D
Sbjct: 61  MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 182 NDNPPVFERSEYFVSVSEALPAKSQVRTTC 211
           NDN P F +  +  SV+E     + V    
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVS 30

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 4e-04
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 11  PIRYTIHSGDPEG----YFTLDSTTGVIRTAATLDH-EVTGVLLLSVQAS-SGSPPLYSY 64
            I YTI S DPE      FT++  TGVI    +    E      L VQA+      L + 
Sbjct: 44  AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 103

Query: 65  AQVKVTIED 73
           A+  +T++D
Sbjct: 104 AKAVITVKD 112

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 72.9 bits (178), Expect = 4e-17
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 88  LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
           + V E+     P   +V    +     K+ Y +      +    +F ++  +G + +++ 
Sbjct: 7   IKVSENERGPFPK-RLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 65

Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           LD E   ++ +   A  +   P+   + + + V D
Sbjct: 66  LDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 7   DQSNPIRYTIHSGD----PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D+ N + Y+I        P+G F ++  TG +     LD E     +LS  A      P+
Sbjct: 29  DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 88

Query: 62  YSYAQVKVTIED 73
               ++ + + D
Sbjct: 89  EEPMEITINVID 100

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 70.1 bits (170), Expect = 6e-16
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 75  NDNAPEFESTTIRLSVPESAALGLPLYTVVARD---KDSGDNGKIRYHLASG--NFGDSR 129
           NDN P+F     R SV E    G  +  V A D        NG + Y +           
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61

Query: 130 LFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           LF +++ +G +S +   LD E    +T+ V ATD     +S     ++++ D
Sbjct: 62  LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 182 NDNPPVFERSEYFVSVSEALPAKSQVRTTC-TPLYVLVEGQCSLVCWSTLRLMTHSTLKS 240
           NDN P F +  +  SV E +   +QV     T     ++    ++ +S L+      + +
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 12  IRYTIHSGDPE----GYFTLDSTTGVIR-TAATLDHEVTGVLLLSVQAS-SGSPPLYSYA 65
           + Y+I   DPE      FT++  TGVI      LD E      L+VQA+      L    
Sbjct: 46  LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEG 105

Query: 66  QVKVTIED 73
           +  + I D
Sbjct: 106 KAIIQITD 113

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.8 bits (162), Expect = 7e-15
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 88  LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLSKH 145
           +++PE++    P   +V        N  +RY +         + +F ++  SG LS++K 
Sbjct: 9   INLPENSRGPFPQ-ELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67

Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
           LD E   R  +   A D     + + + +++ V D
Sbjct: 68  LDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 7   DQSNPIRYTIHS----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
           D++  +RY++        P G F ++  +G +     LD E+     L   A       +
Sbjct: 31  DKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQV 90

Query: 62  YSYAQVKVTIED 73
            +   + + + D
Sbjct: 91  ENPIDIVINVID 102

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 1e-14
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 75  NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD--NGKIRYHLASGN--FGDSRL 130
           NDN PEF       SVPE +  G  + TV A D D  +  NG +RY + S         +
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60

Query: 131 FAVDQTSGHLSLSKHL-DYETSQRHTIVVSATDQGDPP---MSSNLTVLLEVQD 180
           F ++  +G +       D E  Q++T+++ ATD    P   +S+  T ++ V D
Sbjct: 61  FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 182 NDNPPVFERSEYFVSVSEALPAKSQVRTTC 211
           NDN P F    +  SV E     + V T  
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVT 30

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 65.0 bits (157), Expect = 5e-14
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 75  NDNAPEFESTTIRLSVPESAALGLPLYTVVARDK-DSGDNGKIRYHLASGNFGDSRLFAV 133
           NDNAP F+  T    VPE+   G  +  +   D    G       +    N G       
Sbjct: 2   NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60

Query: 134 DQTSG--HLSLSKHLDYETSQRHTIVVSATDQGD---PPMSSNLTVLLEVQDV 181
           D  S    L+ +K LD+E  +++ + ++  +      P  +S  TV + V+DV
Sbjct: 61  DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 36.1 bits (82), Expect = 8e-04
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 182 NDNPPVFERSEYFVSVSEALP 202
           NDN P+F+   Y   V E   
Sbjct: 2   NDNAPIFDPKTYTALVPENEI 22

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 56.6 bits (135), Expect = 5e-11
 Identities = 16/113 (14%), Positives = 26/113 (23%), Gaps = 8/113 (7%)

Query: 75  NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVD 134
           NDN P        +              +   D D   N        S     +   A  
Sbjct: 1   NDNGPVPSPRVFTMCDQNP-----EPQVLTISDADIPPNTYPYKVSLSHGSDLTW-KAEL 54

Query: 135 QTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPV 187
            + G   L           ++I V  +D  + P  + +     V         
Sbjct: 55  DSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCSCEGKAIK 105

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 2e-10
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 13/138 (9%)

Query: 73  DRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFA 132
           +       F        +P+    G PL  V   + +     +      +          
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK------- 57

Query: 133 VDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSE 192
                G +   +       ++   ++ A D+          V L  +      P+ E  E
Sbjct: 58  -VDEDGTVYAVRSFPLTA-EQAKFLIYAQDKETQEKWQV-AVNLSREPTLTEEPMKEPHE 114

Query: 193 YFVSVSEALPAKSQVRTT 210
               V    P +    + 
Sbjct: 115 IEEIV---FPRQLAKHSG 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.87
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.87
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.86
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.83
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.82
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.78
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.7
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.65
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.62
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.62
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.25
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.24
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.23
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.23
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.17
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.16
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.14
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	98.9
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	98.71
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	98.67
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	88.4
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	84.72
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	80.77

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.4e-22  Score=150.48  Aligned_cols=106  Identities=32%  Similarity=0.448  Sum_probs=95.6

Q ss_pred             CCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCC---CCceEEEEEeeCCC--CCceeeEEeCceeEEEEc-eecCc
Q psy11062         75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRYHLASGNF--GDSRLFAVDQTSGHLSLS-KHLDY  148 (281)
Q Consensus        75 Nd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g---~~~~i~y~l~~~~~--~~~~~F~id~~tG~i~~~-~~LD~  148 (281)
                      |||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|   .|+.++|+|..++.  ....+|.|++.+|.|++. +.|||
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   80 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR   80 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCT
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEeccccc
Confidence            8999999999999999999999999999999999976   46789999986532  234689999999999864 57999


Q ss_pred             cCcceEEEEEEEEECCCCCCeEEEEEEEEEEe
Q psy11062        149 ETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD  180 (281)
Q Consensus       149 E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~D  180 (281)
                      |....|.|.|+|+|++.|+++++++|+|+|+|
T Consensus        81 E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          81 ESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             TTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             ccCcEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            99999999999999999999999999999987

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.87  E-value=1.3e-22  Score=152.21  Aligned_cols=107  Identities=30%  Similarity=0.428  Sum_probs=96.7

Q ss_pred             cCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCC---CCceEEEEEeeCCCC--CceeeEEeCceeEEEEc-eecC
Q psy11062         74 RNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLS-KHLD  147 (281)
Q Consensus        74 vNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g---~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~~-~~LD  147 (281)
                      .|||+|.|.+..|.+.|+||+++|+.|+++.|+|+|.+   .|+.+.|+|..++..  ....|.|++.+|.|++. +.||
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD   80 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLD   80 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCC
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccccC
Confidence            49999999999999999999999999999999999976   467899999875432  34689999999999885 5799


Q ss_pred             ccCcceEEEEEEEEECCCCCCeEEEEEEEEEEe
Q psy11062        148 YETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD  180 (281)
Q Consensus       148 ~E~~~~y~l~V~a~D~~~p~~~~~~~v~I~V~D  180 (281)
                      ||....|.|.|+|+|.+.|++++++.|.|+|.|
T Consensus        81 ~E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          81 REKFPEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             TTTCCEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             cccCCEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            999999999999999999999999999999987

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.86  E-value=1.9e-22  Score=149.95  Aligned_cols=103  Identities=27%  Similarity=0.421  Sum_probs=95.9

Q ss_pred             CCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccC----c
Q psy11062         76 DNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYET----S  151 (281)
Q Consensus        76 d~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~----~  151 (281)
                      ||+|.|.+..|.+.|+|+.++|+.++++.|+|+|.+.++.++|+|.+   +...+|.|++.+|.|+++++||||.    .
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~---~~~~~F~id~~tG~i~~~~~lD~E~~~~~~   77 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN---DPARWLTVNKDNGIVTGNGNLDRESEYVKN   77 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC---CSSCCCEEETTTTEEEECSCCCTTSSSCCS
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecC---CCcccceeccccceEEEccccChhhccccC
Confidence            68999999999999999999999999999999999999999999986   3467899999999999999999995    4


Q ss_pred             ceEEEEEEEEECCCCCCeEEEEEEEEEEeC
Q psy11062        152 QRHTIVVSATDQGDPPMSSNLTVLLEVQDV  181 (281)
Q Consensus       152 ~~y~l~V~a~D~~~p~~~~~~~v~I~V~Dv  181 (281)
                      ..|.|.|.|+|.|.|+++++++|.|+|.||
T Consensus        78 ~~y~l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          78 NTYTVIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             SCCEEEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             CeEEEEEEEEECCcCCcEEEEEEEEEEEeC
Confidence            679999999999999999999999999986

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=5e-21  Score=143.54  Aligned_cols=106  Identities=33%  Similarity=0.492  Sum_probs=89.5

Q ss_pred             CCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCC--CCCceEEEEEeeCCC--CCceeeEEeCceeEE-EEceecCcc
Q psy11062         75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS--GDNGKIRYHLASGNF--GDSRLFAVDQTSGHL-SLSKHLDYE  149 (281)
Q Consensus        75 Nd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~--g~~~~i~y~l~~~~~--~~~~~F~id~~tG~i-~~~~~LD~E  149 (281)
                      |||+|.|.+..|.+.|+||+++|+.|+++.|+|+|.  +.|+.++|+|..+..  .....|.|++.+|.+ .+.++||||
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E   80 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDRE   80 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTT
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccccccc
Confidence            899999999999999999999999999999999995  568899999986432  245689999999975 567889999


Q ss_pred             CcceEEEEEEEEECCCC---CCeEEEEEEEEEEe
Q psy11062        150 TSQRHTIVVSATDQGDP---PMSSNLTVLLEVQD  180 (281)
Q Consensus       150 ~~~~y~l~V~a~D~~~p---~~~~~~~v~I~V~D  180 (281)
                      ....|.|.|+|+|.+.+   .+++++.|.|.|.|
T Consensus        81 ~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          81 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             TCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             cCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            99999999999996543   25788888888876

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4e-21  Score=148.75  Aligned_cols=126  Identities=16%  Similarity=0.204  Sum_probs=108.2

Q ss_pred             ecCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEeCceeEEEEceecCccCcc
Q psy11062         73 DRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQ  152 (281)
Q Consensus        73 dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id~~tG~i~~~~~LD~E~~~  152 (281)
                      |+|++.|.|.+..|.+.|+|+.++|+.|++|.|+|.|.  ++.+.|++..     ...|.|++ +|.|++.++||+|.. 
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~--~~~~~y~~~~-----~~~F~i~~-~G~I~~~~~ld~e~~-   75 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESSE-----PADFKVDE-DGTVYAVRSFPLTAE-   75 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECCC-----SSEEEEET-TTEEEEESCCSCSSS-
T ss_pred             CCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCc--cccceecccc-----ceeeeccc-cEEEEEecccCcccc-
Confidence            78999999999999999999999999999999999995  5678998854     34699997 599999999999965 


Q ss_pred             eEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCeeeCC-ceEEEEeCCCCCCcEEE
Q psy11062        153 RHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERS-EYFVSVSEALPAKSQVR  208 (281)
Q Consensus       153 ~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~~~-~y~~~v~E~~~~gt~v~  208 (281)
                      .|.|.|+|+|.+.|. .+.+.|+|.+.|.|||.|.|... .+...++|+.+.|+.++
T Consensus        76 ~y~l~V~A~D~g~~~-~~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P~~~~~~~~~l  131 (136)
T d1op4a_          76 QAKFLIYAQDKETQE-KWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGAL  131 (136)
T ss_dssp             CEEEEEEEEETTTTE-EEEEEEEECCCCCCCCCCSSCCCCSCCCSSCCCCCCCCSCC
T ss_pred             eEEEEEEEEecCCcc-eeeeEEEEEEcccCCCCCcccCCCCceEEccCcCCCCCCcc
Confidence            699999999999865 46678999999999999999754 34567788887776544

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.78  E-value=2e-19  Score=134.15  Aligned_cols=104  Identities=27%  Similarity=0.451  Sum_probs=87.6

Q ss_pred             cCCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCc--eEEEEEeeCCCCCceeeEEe----CceeEEEEceecC
Q psy11062         74 RNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG--KIRYHLASGNFGDSRLFAVD----QTSGHLSLSKHLD  147 (281)
Q Consensus        74 vNd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~--~i~y~l~~~~~~~~~~F~id----~~tG~i~~~~~LD  147 (281)
                      .|||+|.|.+..|.+.|+|+ ++|+.++++.|+|+|.+.+.  .+.|.+.+   .....|.+.    ..+|.|.+.++||
T Consensus         1 aNDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~---~~~~~f~i~~~~~~~~g~i~~~~~lD   76 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV---NEGGFFNITTDPESNQGILTTAKGLD   76 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC---CTTSCEEEEECTTTCCEEEEESSCCC
T ss_pred             CCCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEeecc---ccccceEEEeecCCCceEEEeeeecc
Confidence            49999999999999999999 57999999999999976544  34444433   345677773    4679999999999


Q ss_pred             ccCcceEEEEEEEEEC---CCCCCeEEEEEEEEEEeC
Q psy11062        148 YETSQRHTIVVSATDQ---GDPPMSSNLTVLLEVQDV  181 (281)
Q Consensus       148 ~E~~~~y~l~V~a~D~---~~p~~~~~~~v~I~V~Dv  181 (281)
                      ||....|.|.|+|+|+   +.|+++++++|+|.|+||
T Consensus        77 ~E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          77 FELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             CSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             cccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            9999999999999997   567789999999999997

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.70  E-value=1.8e-18  Score=127.94  Aligned_cols=104  Identities=16%  Similarity=0.124  Sum_probs=83.6

Q ss_pred             CCCCCeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCc-eEEEEEeeCCCCCceeeEE-eCceeEEEEceecCccCcc
Q psy11062         75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG-KIRYHLASGNFGDSRLFAV-DQTSGHLSLSKHLDYETSQ  152 (281)
Q Consensus        75 Nd~~P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~-~i~y~l~~~~~~~~~~F~i-d~~tG~i~~~~~LD~E~~~  152 (281)
                      |||+|.|.+.  ...|.|+.+.+.   .|.|+|+|.+.++ .++|+|.++.   ...|.+ ....|.+...++||+|...
T Consensus         1 NDNaP~f~~~--~~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~ld~e~~~   72 (107)
T d1l3wa5           1 NDNGPVPSPR--VFTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGS---DLTWKAELDSKGTSMLLSPTQQLKKG   72 (107)
T ss_dssp             CCSCCCBSCC--CEEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCS---SSSCBCCBCTTSSEEEEBCSSCCCSS
T ss_pred             CCCCCccCCC--EEEEEecCCCce---eEEEEcCccCccceeEeeeeeccc---ccccccccccceeeeeeeccccccce
Confidence            8999999865  456999988764   4789999998877 5889888743   334444 3345666667899999999


Q ss_pred             eEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCee
Q psy11062        153 RHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF  188 (281)
Q Consensus       153 ~y~l~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f  188 (281)
                      .|.|.|+|+|.|.|++  +++++|+|.|+|||+|.+
T Consensus        73 ~y~l~V~a~D~G~p~~--~~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          73 DYSIYVLLSDAQNNPQ--LTVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             CBCCEEECCSSSCCCE--EEECCEEECSCSSSCCCC
T ss_pred             eEEEEEEEEeCCCCce--EEEEEEEEEEeeCCcCcc
Confidence            9999999999999865  456889999999999976

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.65  E-value=3.2e-16  Score=114.29  Aligned_cols=92  Identities=16%  Similarity=0.306  Sum_probs=81.5

Q ss_pred             EEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCC--CceeeEEeCceeEEEEceecCccCcceEEEEEEEEECCC
Q psy11062         88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGD  165 (281)
Q Consensus        88 ~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~--~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~  165 (281)
                      +.|+||.+ |.....+.+.|.|.+.|+.++|+|.+++.+  ....|.||+.+|.|++.++||||....|.|.|.|+|.+.
T Consensus         7 i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g~   85 (100)
T d1l3wa1           7 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENG   85 (100)
T ss_dssp             EEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSS
T ss_pred             EEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECCC
Confidence            57999975 656778888899998999999999975422  245799999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEEEEEe
Q psy11062        166 PPMSSNLTVLLEVQD  180 (281)
Q Consensus       166 p~~~~~~~v~I~V~D  180 (281)
                      |++++++.|+|+|+|
T Consensus        86 ~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          86 SPVEEPMEITINVID  100 (100)
T ss_dssp             CBCSCCEEEEEEEEC
T ss_pred             CcEEeEEEEEEEEeC
Confidence            999999999999987

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3.9e-16  Score=114.21  Aligned_cols=93  Identities=23%  Similarity=0.358  Sum_probs=81.0

Q ss_pred             EEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCC--CCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECC
Q psy11062         87 RLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNF--GDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQG  164 (281)
Q Consensus        87 ~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~--~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~  164 (281)
                      .+.|+||.+ |..+..+.+.|.|.+.|+.+.|+|.++..  +..+.|.||+.+|.|++.++||||....|.|.|+|+|.+
T Consensus         8 ~v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g   86 (102)
T d1ncia_           8 PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   86 (102)
T ss_dssp             CEEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTT
T ss_pred             CEEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEECC
Confidence            467999987 55667788889998889999999985321  335689999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEEEEEEe
Q psy11062        165 DPPMSSNLTVLLEVQD  180 (281)
Q Consensus       165 ~p~~~~~~~v~I~V~D  180 (281)
                      .|++++++.|.|+|+|
T Consensus        87 ~~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          87 GNQVENPIDIVINVID  102 (102)
T ss_dssp             SCBSSCCEEEEEEEEC
T ss_pred             CCceeeeEEEEEEEeC
Confidence            9999999999999987

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=5.7e-12  Score=96.42  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CEEEEecCCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCCCCceeEEEEEEEEEecCCCCCe
Q psy11062          1 MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPE   80 (281)
Q Consensus         1 ~~~~d~d~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~~~~~~~~~v~i~V~dvNd~~P~   80 (281)
                      ++|+|.|.++.+.|++.+   ...|.|++ +|.|+++++||||.. .|.|.|.|.|+..+..+.+.|+|.+.|.|+|.|.
T Consensus        35 V~a~D~d~~~~~~y~~~~---~~~F~i~~-~G~I~~~~~ld~e~~-~y~l~V~A~D~g~~~~~~t~V~i~v~d~nd~~p~  109 (136)
T d1op4a_          35 VKFSNCNRKRKVQYESSE---PADFKVDE-DGTVYAVRSFPLTAE-QAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPM  109 (136)
T ss_dssp             CCCBCCSSCCCEEEECCC---SSEEEEET-TTEEEEESCCSCSSS-CEEEEEEEEETTTTEEEEEEEEECCCCCCCCCCS
T ss_pred             eEeecCCccccceecccc---ceeeeccc-cEEEEEecccCcccc-eEEEEEEEEecCCcceeeeEEEEEEcccCCCCCc
Confidence            467888889999999842   25799998 599999999999975 6999999998766667788999999999999999


Q ss_pred             eccCc-EEEEEeCCCCCCce
Q psy11062         81 FESTT-IRLSVPESAALGLP   99 (281)
Q Consensus        81 f~~~~-~~~~v~En~~~gt~   99 (281)
                      |.... +...++|+.+.|.-
T Consensus       110 ~~~~~~~~i~~P~~~~~~~~  129 (136)
T d1op4a_         110 KEPHEIEEIVFPRQLAKHSG  129 (136)
T ss_dssp             SCCCCSCCCSSCCCCCCCCS
T ss_pred             ccCCCCceEEccCcCCCCCC
Confidence            96443 45667888776653

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=7e-12  Score=91.08  Aligned_cols=69  Identities=19%  Similarity=0.369  Sum_probs=59.6

Q ss_pred             EecCCCcEEEEEEeC----CCCceEEEECCccEEEECcCCCceeccEEEEEEEEEe-CCCCceeEEEEEEEEEe
Q psy11062          5 LLDQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIED   73 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g----~~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i~V~d   73 (281)
                      |.+.|+.+.|+|.++    ++.++|.||+.+|.|+++++||||+...|.|.|.|.| |.+++++++.|.|.|.|
T Consensus        29 D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          29 GRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID  102 (102)
T ss_dssp             GGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTSCBSSCCEEEEEEEEC
T ss_pred             CCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEECCCCceeeeEEEEEEEeC
Confidence            445678899999752    3457899999999999999999999999999999996 56678889999999987

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.23  E-value=1.1e-11  Score=89.60  Aligned_cols=69  Identities=25%  Similarity=0.367  Sum_probs=59.9

Q ss_pred             EecCCCcEEEEEEeCCC----CceEEEECCccEEEECcCCCceeccEEEEEEEEEe-CCCCceeEEEEEEEEEe
Q psy11062          5 LLDQSNPIRYTIHSGDP----EGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIED   73 (281)
Q Consensus         5 d~d~~~~l~Y~i~~g~~----~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i~V~d   73 (281)
                      |.+.|+.+.|+|.+++.    .++|.||+.+|.|+++++||||..+.|.|.|.|.| |.+++++++.|.|.|.|
T Consensus        27 D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          27 NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID  100 (100)
T ss_dssp             SGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEEC
T ss_pred             CCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECCCCcEEeEEEEEEEEeC
Confidence            44567889999986543    36799999999999999999999999999999995 56778899999999987

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.17  E-value=1.7e-11  Score=89.74  Aligned_cols=73  Identities=18%  Similarity=0.278  Sum_probs=61.7

Q ss_pred             CEEEEec--CCCcEEEEEEeCCCCceEEEECCccEEEECcCCCceec----cEEEEEEEEEe-CCCCceeEEEEEEEEEe
Q psy11062          1 MKILLLD--QSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVT----GVLLLSVQASS-GSPPLYSYAQVKVTIED   73 (281)
Q Consensus         1 ~~~~d~d--~~~~l~Y~i~~g~~~~~F~Id~~~G~i~~~~~LD~E~~----~~~~l~v~a~d-g~~~~~~~~~v~i~V~d   73 (281)
                      ++|.|.|  .++.++|+|.+ ++.++|.|++.+|.|++++.||||..    ..|.|.|.|.| |.|+++++++|.|.|.|
T Consensus        28 v~A~D~D~~~~~~i~y~i~~-~~~~~F~id~~tG~i~~~~~lD~E~~~~~~~~y~l~v~a~D~g~p~~~~t~~v~V~V~D  106 (107)
T d1l3wa4          28 LVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD  106 (107)
T ss_dssp             CCEECCCTTCCCCEEEEECC-CSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCC
T ss_pred             eEEecCCcCcCCceeEEecC-CCcccceeccccceEEEccccChhhccccCCeEEEEEEEEECCcCCcEEEEEEEEEEEe
Confidence            4677776  46789999964 56689999999999999999999954    57999999995 66778899999999988


Q ss_pred             c
Q psy11062         74 R   74 (281)
Q Consensus        74 v   74 (281)
                      |
T Consensus       107 V  107 (107)
T d1l3wa4         107 V  107 (107)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.16  E-value=2.1e-11  Score=90.02  Aligned_cols=73  Identities=30%  Similarity=0.384  Sum_probs=61.7

Q ss_pred             CEEEEecC-----CCcEEEEEEeCCCC----ceEEEECCccEEEEC-cCCCceeccEEEEEEEEEe-CCCCceeEEEEEE
Q psy11062          1 MKILLLDQ-----SNPIRYTIHSGDPE----GYFTLDSTTGVIRTA-ATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKV   69 (281)
Q Consensus         1 ~~~~d~d~-----~~~l~Y~i~~g~~~----~~F~Id~~~G~i~~~-~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i   69 (281)
                      ++|+|.|.     |+.+.|+|..+++.    ++|.|++.+|.|++. +.||||....|.|.|.|+| |.+++++++.|.|
T Consensus        30 v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~v~I  109 (113)
T d1l3wa2          30 VSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII  109 (113)
T ss_dssp             CCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEE
T ss_pred             EEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccccCcccCCEEEEEEEEEECCCCCcEEEEEEEE
Confidence            46777774     46799999876543    689999999999985 6899999999999999995 5667889999999


Q ss_pred             EEEe
Q psy11062         70 TIED   73 (281)
Q Consensus        70 ~V~d   73 (281)
                      .|.|
T Consensus       110 ~V~D  113 (113)
T d1l3wa2         110 QITD  113 (113)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9987

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=5.6e-11  Score=87.41  Aligned_cols=73  Identities=34%  Similarity=0.448  Sum_probs=61.1

Q ss_pred             CEEEEecC-----CCcEEEEEEeCCC----CceEEEECCccEEEE-CcCCCceeccEEEEEEEEEe-CCCCceeEEEEEE
Q psy11062          1 MKILLLDQ-----SNPIRYTIHSGDP----EGYFTLDSTTGVIRT-AATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKV   69 (281)
Q Consensus         1 ~~~~d~d~-----~~~l~Y~i~~g~~----~~~F~Id~~~G~i~~-~~~LD~E~~~~~~l~v~a~d-g~~~~~~~~~v~i   69 (281)
                      ++|+|.|.     ++.+.|+|..+..    ..+|.|++.+|.|++ .+.||||....|.|.|.|+| |.+++++++.|.|
T Consensus        29 v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~y~l~V~a~D~g~~~~~~~~~v~I  108 (112)
T d1edha2          29 VSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVI  108 (112)
T ss_dssp             CCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEE
T ss_pred             EEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEecccccccCcEEEEEEEEEECCCCccEEEEEEEE
Confidence            46777774     4679999987543    368999999999986 56799999999999999995 5677889999999


Q ss_pred             EEEe
Q psy11062         70 TIED   73 (281)
Q Consensus        70 ~V~d   73 (281)
                      .|.|
T Consensus       109 ~V~D  112 (112)
T d1edha2         109 TVKD  112 (112)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9987

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.6e-09  Score=79.57  Aligned_cols=73  Identities=32%  Similarity=0.405  Sum_probs=55.2

Q ss_pred             CEEEEecC----CCcEEEEEEeCC----CCceEEEECCccEE-EECcCCCceeccEEEEEEEEEeC--CC--CceeEEEE
Q psy11062          1 MKILLLDQ----SNPIRYTIHSGD----PEGYFTLDSTTGVI-RTAATLDHEVTGVLLLSVQASSG--SP--PLYSYAQV   67 (281)
Q Consensus         1 ~~~~d~d~----~~~l~Y~i~~g~----~~~~F~Id~~~G~i-~~~~~LD~E~~~~~~l~v~a~dg--~~--~~~~~~~v   67 (281)
                      |+|+|.|.    |+.|.|+|+++.    ..++|.|++.+|.+ ++.++||||....|.|.|.|+|.  .+  ..++++.|
T Consensus        29 v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~~~~~~~~~ss~~~v  108 (114)
T d1ncja2          29 VTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATA  108 (114)
T ss_dssp             CCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTTTCSEEEEEEEEESGGGCBTTBCEEEEEE
T ss_pred             EEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccccccccCCEEEEEEEEEECCCCCCCCceEEEEE
Confidence            45677763    578999998643    33689999999975 56789999999999999999962  22  24677888


Q ss_pred             EEEEEe
Q psy11062         68 KVTIED   73 (281)
Q Consensus        68 ~i~V~d   73 (281)
                      .|.|.|
T Consensus       109 ~I~V~D  114 (114)
T d1ncja2         109 VITVTD  114 (114)
T ss_dssp             EEEEC-
T ss_pred             EEEEEC
Confidence            887765

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.71  E-value=5.2e-10  Score=81.41  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=57.7

Q ss_pred             CEEEEecC--CC-cEEEEEEeCCCCceEEE-ECCccEEEECcCCCceeccEEEEEEEEEeC-CCCceeEEEEEEEEEecC
Q psy11062          1 MKILLLDQ--SN-PIRYTIHSGDPEGYFTL-DSTTGVIRTAATLDHEVTGVLLLSVQASSG-SPPLYSYAQVKVTIEDRN   75 (281)
Q Consensus         1 ~~~~d~d~--~~-~l~Y~i~~g~~~~~F~I-d~~~G~i~~~~~LD~E~~~~~~l~v~a~dg-~~~~~~~~~v~i~V~dvN   75 (281)
                      |+|+|.|.  ++ .++|+|.++... .|.+ ....|.+...+.||+|....|.|.|.|+|+ .|+  .+++++|.|.|+|
T Consensus        24 v~AtD~D~~~n~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ld~e~~~~y~l~V~a~D~G~p~--~~~tv~V~V~Dc~  100 (107)
T d1l3wa5          24 LTISDADIPPNTYPYKVSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNP--QLTVVNATVCSCE  100 (107)
T ss_dssp             EEBCCSSCTTTTCCCCCBCCSCSSS-SCBCCBCTTSSEEEEBCSSCCCSSCBCCEEECCSSSCCC--EEEECCEEECSCS
T ss_pred             EEEEcCccCccceeEeeeeeccccc-ccccccccceeeeeeeccccccceeEEEEEEEEeCCCCc--eEEEEEEEEEEee
Confidence            35666664  23 589999765544 4444 344566666689999999999999999974 444  3557999999999


Q ss_pred             CCCCee
Q psy11062         76 DNAPEF   81 (281)
Q Consensus        76 d~~P~f   81 (281)
                      ||+|.+
T Consensus       101 dn~~~c  106 (107)
T d1l3wa5         101 GKAIKC  106 (107)
T ss_dssp             SSCCCC
T ss_pred             CCcCcc
Confidence            999976

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.67  E-value=9.3e-09  Score=74.97  Aligned_cols=62  Identities=29%  Similarity=0.396  Sum_probs=51.4

Q ss_pred             EEEEEeCCCCceEEEE----CCccEEEECcCCCceeccEEEEEEEEEe----CCCCceeEEEEEEEEEec
Q psy11062         13 RYTIHSGDPEGYFTLD----STTGVIRTAATLDHEVTGVLLLSVQASS----GSPPLYSYAQVKVTIEDR   74 (281)
Q Consensus        13 ~Y~i~~g~~~~~F~Id----~~~G~i~~~~~LD~E~~~~~~l~v~a~d----g~~~~~~~~~v~i~V~dv   74 (281)
                      .|.+..++..+.|.|.    ..+|.|++.+.||||....|.|.|.|+|    |.++++++++|.|.|.||
T Consensus        44 ~~~~~~~~~~~~f~i~~~~~~~~g~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          44 AVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             EECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             EEEeeccccccceEEEeecCCCceEEEeeeecccccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            3444456667889995    4578999999999999999999999997    355678899999999996

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.40  E-value=2.3  Score=28.01  Aligned_cols=98  Identities=15%  Similarity=0.108  Sum_probs=53.9

Q ss_pred             CeeccCcEEEEEeCCCCCCceEEEEEEEeCCCCCCceEEEEEeeCCCCCceeeEEe--CceeEEEEceecCccCcceEEE
Q psy11062         79 PEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVD--QTSGHLSLSKHLDYETSQRHTI  156 (281)
Q Consensus        79 P~f~~~~~~~~v~En~~~gt~v~~v~a~D~D~g~~~~i~y~l~~~~~~~~~~F~id--~~tG~i~~~~~LD~E~~~~y~l  156 (281)
                      |.|....-...+.++..   ......+.. +  +...+.|...+........+.+.  .....|.+ .....+..+.|.+
T Consensus         1 P~~~~~p~~~~v~~G~~---~~l~C~v~g-~--p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I-~~~~~~D~G~Y~C   73 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGES---VELFGKVTG-T--QPITCTWMKFRKQIQESEHMKVENSENGSKLTI-LAARQEHCGCYTL   73 (101)
T ss_dssp             CEESCCCCSEEEETTCC---EEEEEEEES-S--SSCEEEEEESSSBCCCSSSEEEEECSSEEEEEE-TTCCTTTCEEEEE
T ss_pred             CeEEeeCCcEEEeCCCc---EEEEEEEEe-c--CCCEEEEEeCceeeccCCcEEEEEecceeEEEE-eeCCcccCEEEEE
Confidence            55554444556766643   444555542 2  13356665543322233445543  22223433 3455666788875


Q ss_pred             EEEEEECCCCCCeEEEEEEEEEEeCCCCCCeee
Q psy11062        157 VVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFE  189 (281)
Q Consensus       157 ~V~a~D~~~p~~~~~~~v~I~V~DvND~~P~f~  189 (281)
                      .  |++..+   ...+.+.|.|.|..+ +|.|.
T Consensus        74 ~--a~N~~G---~~~~~~~l~V~~~P~-pP~g~  100 (101)
T d2cqva1          74 L--VENKLG---SRQAQVNLTVVDKPD-PPAGT  100 (101)
T ss_dssp             E--EECSSC---EEECCEEEEEECSCS-CCCCC
T ss_pred             E--EEECCC---EEEEEEEEEEEecCC-CcCCC
Confidence            5  566554   677788899999876 77764

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.72  E-value=1.4  Score=29.86  Aligned_cols=48  Identities=21%  Similarity=0.063  Sum_probs=33.8

Q ss_pred             EEEEEeeCCC-CCceeeEEeCceeEEEEceecCccCcceEEEEEEEEECCC
Q psy11062        116 IRYHLASGNF-GDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGD  165 (281)
Q Consensus       116 i~y~l~~~~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~  165 (281)
                      ++|++...+. ....+..+|+.+|.+.-. +. .+..+.|.+.|+|+|.+.
T Consensus        33 ~t~~~~~~~g~~LPsWl~fd~~tg~~~Gt-P~-~~~~G~~~i~vtAtD~~~   81 (103)
T d1u2ca1          33 EIIKVSAAGKEALPSWLHWDPHSHILEGL-PL-DTDKGVHYISVSAARLGA   81 (103)
T ss_dssp             EEEEEEETTSSSCCTTEEEETTTTEEEEC-CC-GGGCEEEEEEEEEEEECT
T ss_pred             cEEEEEecCCCCCCccEEEeccCCEEEEc-cC-CCCceEEEEEEEEEeCCC
Confidence            6677763211 235788999999998653 32 345788999999999765

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.77  E-value=5.1  Score=26.85  Aligned_cols=48  Identities=15%  Similarity=0.142  Sum_probs=34.2

Q ss_pred             CCcEEEEEEeCC---CCceEEEECCccEEEECcCCCceeccEEEEEEEEEeCC
Q psy11062          9 SNPIRYTIHSGD---PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS   58 (281)
Q Consensus         9 ~~~l~Y~i~~g~---~~~~F~Id~~~G~i~~~~~LD~E~~~~~~l~v~a~dg~   58 (281)
                      +..++|++..-+   -..|.++|+.+|.++-.-.-  +....|.+.|.|+|..
T Consensus        30 ~d~~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~~--~~~G~~~i~vtAtD~~   80 (103)
T d1u2ca1          30 SSGEIIKVSAAGKEALPSWLHWDPHSHILEGLPLD--TDKGVHYISVSAARLG   80 (103)
T ss_dssp             CTTEEEEEEETTSSSCCTTEEEETTTTEEEECCCG--GGCEEEEEEEEEEEEC
T ss_pred             CCccEEEEEecCCCCCCccEEEeccCCEEEEccCC--CCceEEEEEEEEEeCC
Confidence            456788887432   23799999999999985443  3345789999999643