Psyllid ID: psy11069

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MVTYHHASLHGNQELHTCPARLSPSLACLVSLVGSASALIPRTVCGDILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNKIT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHccccccEEEccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccccccccccccccHHHEHEHccccccccccccccccEccccHHHHHcccccHHEHcHccccccccccccccccEccccHHHHHcHEEcccccccccccEEEccccccccEcccccHHEHHHHcccccccEccccccccccccccEccccHHHHHHHHcccccccccEEcccccccEccccHHHHHHHHccccccccccccccccEEccccHHHEHHHHccccccccccccHHccccEccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHccccccEcccccccccEccccHHHHHHHHEccccccEEcccccccccEccccHHHHHHHHcccccccEEcccccccccEccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mvtyhhaslhgnqelhtcparlspsLACLVSLVGsasaliprtvcgdiLENMFVFCVRhadvlimpanhvLTVSWVYEEDAITEALQSLginkeyfisstggknskkqqlwscpivncnftsvnlNTFKIHLLkhfdkkpfkcklttanntpcmwgffskhkLLRHmtshdedkkcypcdqkncnkrfTTLSNLKMhmvrhgkpltlcceelgcgrkfqtMKQYSTHLkehsnvsapymcdykgcgksFYLMASLKShqrvhvtnpedlvckgcgkqfkvpcrlREHYKAVhestknfkcthdgckllfssksalkrhnkskhlnmrmfpcplvtcgksflrSEHLQEHMLqhnenkpkftcpyqdclmSYVAKSSLYAHLKhvhstnkit
Flexible Loop (DISEMBL)
MVTYHHASLHGNQELHTCPARLSPSLACLVSLVGSASALIPRTVCGDILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDedkkcypcdqknCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVhestknfkcthdGCKLLFSSKSALKRHNKskhlnmrmfpCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHlkhvhstnkit
Low Complexity Region (SEG)
MVTYHHASLHGNQELHTCPARLSPSLACLVSLVGSASALIPRTVCGDILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNKIT
Disordered region (IsUnstruct)
**************LHTCPARLSPSLACLVSLVGSASALIPRTVCGDILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSK*********KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHV*******
Disordered Region (DISOPRED)
*VTYHHASLHGNQELHTCPARLSP********VGSASALIPRTVCGDILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNKI*
Disordered Region (DISEMBL)
MVTYHHASLHGNQELHTCPARLSPSLACLVSLVGSASALIPRTVCGDILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISS*********QLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKH********
Disordered Region (DISPRO)
*****HASLHGNQELHTCPARLSPSLACLVSLVGSASALIPRTVCGDILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH*KHVH******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTYHHASLHGNQELHTCPARLSPSLACLVSLVGSASALIPRTVCGDILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNKIT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
A2CE44	873	Zinc finger X-linked prot	yes	N/A	0.670	0.300	0.399	2e-46
Q2QGD7	858	Zinc finger protein ZXDC	yes	N/A	0.682	0.311	0.383	1e-45
Q8C8V1	858	Zinc finger protein ZXDC	no	N/A	0.682	0.311	0.381	1e-45
P98169	803	Zinc finger X-linked prot	no	N/A	0.670	0.326	0.395	4e-45
P98168	799	Zinc finger X-linked prot	no	N/A	0.670	0.327	0.392	4e-44
Q8VHT7	364	Transcription factor IIIA	no	N/A	0.744	0.799	0.303	1e-25
P34694	339	Transcription factor IIIA	N/A	N/A	0.629	0.725	0.296	2e-25
Q8VHT8	363	Transcription factor IIIA	no	N/A	0.726	0.782	0.300	2e-24
P03001	366	Transcription factor IIIA	N/A	N/A	0.629	0.672	0.303	3e-24
P17842	339	Transcription factor IIIA	N/A	N/A	0.652	0.752	0.32	6e-24

>sp|A2CE44|ZXDAB_MOUSE Zinc finger X-linked protein ZXDA/ZXDB OS=Mus musculus GN=Zxda PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 148/278 (53%), Gaps = 16/278 (5%)

Query: 110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRH 166
           L+ CP   C  T    +  K+HLL H     ++PFKC L+      C W F + +KL RH
Sbjct: 339 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 393

Query: 167 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 226
           + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct: 394 LQSHDKLRP-FGCPVQGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 450

Query: 227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
           H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct: 451 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 510

Query: 285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE 344
           + H ++ H   + F C  DGC   F+S S L RH K KH + R F CP+  CGKSF R+E
Sbjct: 511 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSFTRAE 568

Query: 345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
           HL+ H + H   KP F CP + C   + A+SSLY H K
Sbjct: 569 HLKGHSITHLGTKP-FVCPVEGCCARFSARSSLYIHSK 605

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.
Mus musculus (taxid: 10090)

>sp|Q2QGD7|ZXDC_HUMAN Zinc finger protein ZXDC OS=Homo sapiens GN=ZXDC PE=1 SV=2

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/284 (38%), Positives = 147/284 (51%), Gaps = 17/284 (5%)

Query: 111 WSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRHM 167
           + CP   C       +  K+HLL H     ++PFKC L       C W F + +KL RH+
Sbjct: 175 YRCPEPQCALAFAKKHQLKVHLLTHGGGQGRRPFKCPLEG-----CGWAFTTSYKLKRHL 229

Query: 168 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTH 227
            SHD+ +  + C    C K+FTT+ NLK HM  H +     CE   C  +F T  + S+H
Sbjct: 230 QSHDKLRP-FGCPVGGCGKKFTTVYNLKAHMKGHEQESLFKCEV--CAERFPTHAKLSSH 286

Query: 228 LKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLR 285
            + H     PY CD+ GC K+F  +++L SH R H    E   C   GC KQ+   CRL+
Sbjct: 287 QRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLK 346

Query: 286 EHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEH 345
            H ++ H   + F C  D C   F+S S L RH + KH + R F CP+  CGKSF R+EH
Sbjct: 347 IHLRS-HTGERPFICDSDSCGWTFTSMSKLLRHRR-KHDDDRRFTCPVEGCGKSFTRAEH 404

Query: 346 LQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHL-KHVHSTN 388
           L+ H + H   KP F CP + C   + A+SSLY H  KHV    
Sbjct: 405 LKGHSITHLGTKP-FECPVEGCCARFSARSSLYIHSKKHVQDVG 447

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Homo sapiens (taxid: 9606)

>sp|Q8C8V1|ZXDC_MOUSE Zinc finger protein ZXDC OS=Mus musculus GN=Zxdc PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/283 (38%), Positives = 147/283 (51%), Gaps = 16/283 (5%)

Query: 105 SKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKH 161
           S     + CP   C  +    +  K+HLL H     ++PFKC L       C W F + +
Sbjct: 170 SAGSPAYRCPEPQCALSFAKKHQLKVHLLTHGSLQGRRPFKCPLDG-----CGWAFTTSY 224

Query: 162 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 221
           KL RH+ SHD+  + + C    C K+FTT+ NLK HM  H +     CE   C  +F T 
Sbjct: 225 KLKRHLQSHDK-LRPFSCPVGGCGKKFTTVYNLKAHMKGHEQESLFKCEV--CAERFPTH 281

Query: 222 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFK 279
            + ++H + H     PY CD+ GC K+F  +++L SH R H    E   C   GC KQ+ 
Sbjct: 282 AKLNSHQRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCNKQYD 341

Query: 280 VPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKS 339
             CRL+ H ++ H   + F C  D C   F+S S L RH K KH + R F CP+  CGKS
Sbjct: 342 KACRLKIHLRS-HTGERPFICDSDSCGWTFTSMSKLLRH-KRKHDDDRRFTCPVEGCGKS 399

Query: 340 FLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
           F R+EHL+ H + H   KP F CP + C   + A+SSLY H K
Sbjct: 400 FTRAEHLKGHSITHLGTKP-FECPVEGCCARFSARSSLYIHSK 441

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Mus musculus (taxid: 10090)

>sp|P98169|ZXDB_HUMAN Zinc finger X-linked protein ZXDB OS=Homo sapiens GN=ZXDB PE=2 SV=2

 Score =  182 bits (461), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/278 (39%), Positives = 145/278 (52%), Gaps = 16/278 (5%)

Query: 110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRH 166
           L+ CP   C  T    +  K+HLL H     ++PFKC L       C W F + +KL RH
Sbjct: 270 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 324

Query: 167 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 226
           + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + S 
Sbjct: 325 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLSA 381

Query: 227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
           H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct: 382 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 441

Query: 285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE 344
           + H ++ H   + F C  DGC   F+S S L RH K KH + R F CP+  CGKSF R+E
Sbjct: 442 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHDDDRRFMCPVEGCGKSFTRAE 499

Query: 345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
           HL+ H + H   KP F CP   C   + A+SSLY H K
Sbjct: 500 HLKGHSITHLGTKP-FVCPVAGCCARFSARSSLYIHSK 536

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Homo sapiens (taxid: 9606)

>sp|P98168|ZXDA_HUMAN Zinc finger X-linked protein ZXDA OS=Homo sapiens GN=ZXDA PE=1 SV=2

 Score =  179 bits (453), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 144/278 (51%), Gaps = 16/278 (5%)

Query: 110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRH 166
           L+ CP   C  T    +  K+HLL H     ++PFKC L       C W F + +KL RH
Sbjct: 266 LYLCPEALCGQTFAKKHQLKMHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 320

Query: 167 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 226
           + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  +   
Sbjct: 321 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLGA 377

Query: 227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
           H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct: 378 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 437

Query: 285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE 344
           + H ++ H   + F C  DGC   F+S S L RH K KH + R F CP+  CGKSF R+E
Sbjct: 438 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHDDDRRFMCPVEGCGKSFTRAE 495

Query: 345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
           HL+ H + H   KP F CP   C   + A+SSLY H K
Sbjct: 496 HLKGHSITHLGTKP-FVCPVAGCCARFSARSSLYIHSK 532

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Homo sapiens (taxid: 9606)

>sp|Q8VHT7|TF3A_MOUSE Transcription factor IIIA OS=Mus musculus GN=Gtf3a PE=2 SV=2

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 147/316 (46%), Gaps = 25/316 (7%)

Query: 81  AITEALQSLGINKEYFISSTGGKNSKKQQLWS---CPIVNCNFTSVNLNTFKIHLLKHFD 137
           ++ EA+ SL I  + F+ +  G    +  L S   C   +C+ +         HL KH  
Sbjct: 6   SVAEAVSSLTIA-DAFVGACEGPAPPRPALPSRFICSFPDCSASYNKAWKLDAHLCKHTG 64

Query: 138 KKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMH 197
           ++PF C         C   F   + L RH+  H  +K  + C    CN++F T SNLK H
Sbjct: 65  ERPFVCDYEG-----CGKAFIRDYHLSRHVLIHTGEKP-FVCADDGCNQKFNTKSNLKKH 118

Query: 198 MVR-HGKPL-TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAP-YMCDYKGCGKSFYLMAS 254
           + R HG P     C   GC + F+  +Q  TH  +H+  S P + C ++GCGK F   + 
Sbjct: 119 IERKHGNPQKQYVCSYEGCKKAFKKHQQLRTHQCQHT--SEPLFRCTHEGCGKHFASPSR 176

Query: 255 LKSHQRVHVTNPEDLVC-KGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKS 313
           LK H +VH    E  +C KGC    K    L +H +  H+       T + C+ +F  + 
Sbjct: 177 LKRHGKVH----EGYLCQKGCSFMGKTWTELLKHMREAHKED----ITCNVCQRMFKRRD 228

Query: 314 ALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVA 373
            LK+H K+      ++ CP   CG+++    +LQ H+L  +E K  F C +  C  ++  
Sbjct: 229 YLKQHMKTHAPERDVYRCPRQGCGRTYTTVFNLQSHILSFHEEKRPFVCEHAGCGKTFAM 288

Query: 374 KSSLYAHLKHVHSTNK 389
           K SL  H   VH  +K
Sbjct: 289 KQSLMRH-SVVHDPDK 303

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's. May initiate transcription of the 5S ribosomal RNA gene and maintain the stability of transcription of other genes.

Mus musculus (taxid: 10090)

>sp|P34694|TF3A_ANAAE Transcription factor IIIA OS=Anaxyrus americanus GN=gtf3a PE=2 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 123/280 (43%), Gaps = 34/280 (12%)

Query: 111 WSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 170
           + C   +CN T       + HL KH  ++PF C         C  GF + H L RH+ SH
Sbjct: 12  FICSFPDCNATYNKNRKLQAHLCKHTGERPFPCTYEG-----CEKGFVTLHHLNRHVLSH 66

Query: 171 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVR-HGKPLTL-CCEELGCGRKFQTMKQYSTHL 228
             +K C  C+ +NCN  FTT SN+++H  R H  P  +  C    CG++F+   Q   H 
Sbjct: 67  TGEKPC-KCETENCNLAFTTASNMRLHFKRAHSSPAQVYVCYFADCGQQFRKHNQLKIHQ 125

Query: 229 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP---------------------- 266
             H+N   P+ C ++GC K +   + LK H++ H   P                      
Sbjct: 126 YIHTN-QQPFKCSHEGCDKCYASPSRLKRHEKTHAGYPCRKDSTCPFVGKTWSDYMKHAA 184

Query: 267 ---EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKH 323
               ++ C  C + FK    L+EH K   E    ++C  + C   +++K  LK H  + H
Sbjct: 185 ELHSEVTCSICNRTFKRKSFLKEHKKIHREERIVYRCPRENCDRTYTTKFNLKSHILTFH 244

Query: 324 LNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP 363
            N+R F C    CGK+F   + L  H   H+  K K   P
Sbjct: 245 ENLRPFVCEHEGCGKTFAMKQSLDRHFNTHDPEKKKMVKP 284

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Anaxyrus americanus (taxid: 8389)

>sp|Q8VHT8|TF3A_RAT Transcription factor IIIA OS=Rattus norvegicus GN=Gtf3a PE=2 SV=2

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 142/306 (46%), Gaps = 22/306 (7%)

Query: 81  AITEALQSLGINKEYFISSTGGKNSKKQQLWS---CPIVNCNFTSVNLNTFKIHLLKHFD 137
           ++ EA+ SL I  + F+ +  G    +  L S   C   +C+ +         HL KH  
Sbjct: 6   SVAEAVSSLTIA-DAFVRACVGPAPPRPALPSRFICSFPDCSASYNKAWKLDAHLCKHTG 64

Query: 138 KKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMH 197
           ++PF C         C   F   + L RH+  H  +K  + C    CN++F+T SNLK H
Sbjct: 65  ERPFVCDYEG-----CGKAFIRDYHLSRHILIHTGEKP-FVCADNGCNQKFSTKSNLKKH 118

Query: 198 MVR-HGKPL-TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASL 255
           + R H  P     C   GC + F+  +Q  TH  +H+N    + C ++GCGK F   + L
Sbjct: 119 IERKHENPQKQYVCNFEGCKKAFKKHQQLRTHQCQHTNEPL-FRCTHEGCGKHFASPSRL 177

Query: 256 KSHQRVHVTNPEDLVC-KGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSA 314
           K H +VH    E  +C KGC    K    L +H +  H+  +   CT   C+ +F  K  
Sbjct: 178 KRHGKVH----EGYLCQKGCSFVGKTWTELLKHTREAHK--EEVTCT--VCQKMFKRKDH 229

Query: 315 LKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAK 374
           LK+H K+      ++ CP   C +++    +LQ H+L  +E K  F C +  C  ++  K
Sbjct: 230 LKQHMKTHAPERDVYRCPREGCARTYTTVFNLQSHILSFHEEKRPFVCEHAGCGKTFAMK 289

Query: 375 SSLYAH 380
            SL  H
Sbjct: 290 QSLMRH 295

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's. May initiate transcription of the 5S ribosomal RNA gene and maintain the stability of transcription of other genes.

Rattus norvegicus (taxid: 10116)

>sp|P03001|TF3A_XENLA Transcription factor IIIA OS=Xenopus laevis GN=gtf3a PE=1 SV=2

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 121/283 (42%), Gaps = 37/283 (13%)

Query: 111 WSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 170
           + C   +C          + HL KH  +KPF CK        C  GF S H L RH  +H
Sbjct: 35  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK-----EEGCEKGFTSLHHLTRHSLTH 89

Query: 171 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVR--HGKPLTLCCEELGCGRKFQTMKQYSTHL 228
             +K  + CD   C+ RFTT +N+K H  R  + K     C    CG+ F+   Q   H 
Sbjct: 90  TGEKN-FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 148

Query: 229 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP---------------------- 266
             H+    PY C ++GC K F L + LK H++VH   P                      
Sbjct: 149 FSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 207

Query: 267 ---EDL-VCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSK 322
              +DL VC  C ++F+    LR+H K   +    + C  DGC   +++   L+ H +S 
Sbjct: 208 ECHQDLAVCDVCNRKFRHKDYLRDHQKTHEKERTVYLCPRDGCDRSYTTAFNLRSHIQSF 267

Query: 323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKF--TCP 363
           H   R F C    CGK F   + L+ H + H+  K K    CP
Sbjct: 268 HEEQRPFVCEHAGCGKCFAMKKSLERHSVVHDPEKRKLKEKCP 310

Acts as both a positive transcription factor for 5S RNA genes and a specific RNA binding protein that complexes with 5S RNA in oocytes to form the 7S ribonucleoprotein storage particle. May play an essential role in the developmental change in 5S RNA gene expression. Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Xenopus laevis (taxid: 8355)

>sp|P17842|TF3A_XENBO Transcription factor IIIA OS=Xenopus borealis GN=gtf3a PE=2 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 125/275 (45%), Gaps = 20/275 (7%)

Query: 111 WSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 170
           + C   +C  +       + HL KH  +KPF CK        C  GF S H L RH  +H
Sbjct: 13  YICSFADCGASYNKNWKLRAHLCKHTGEKPFPCK-----EEGCDKGFTSLHHLTRHSITH 67

Query: 171 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLC---CEELGCGRKFQTMKQYSTH 227
             +K  + CD   C+  FTT +N+K H  R    L LC   C   GC + F+   Q   H
Sbjct: 68  TGEKN-FKCDSDKCDLTFTTKANMKKHFNRFHN-LQLCVYVCHFEGCDKAFKKHNQLKVH 125

Query: 228 LKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP--EDLVCKGCGKQFKVPCRLR 285
              H+    PY C ++GC KSF + + LK H++VH   P  +D  C   GK + +     
Sbjct: 126 QFTHTQ-QLPYKCPHEGCDKSFSVPSCLKRHEKVHAGYPCKKDDSCLFVGKTWTL---YL 181

Query: 286 EHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEH 345
           +H K  H+      C  D CK  F  K  L+ H K+      ++ CP   C +S+    +
Sbjct: 182 KHVKECHQEP--VMC--DECKRTFKHKDYLRNHKKTHKKERTVYCCPRDGCERSYTTEFN 237

Query: 346 LQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
           LQ HM   +E +  F C + +C  S+  K SL  H
Sbjct: 238 LQSHMQSFHEEQRPFACEHAECGKSFAMKKSLERH 272

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Xenopus borealis (taxid: 8354)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
328788295	1033	PREDICTED: hypothetical protein LOC10057	0.741	0.280	0.421	4e-56
332027659	997	Zinc finger X-linked protein ZXDB [Acrom	0.741	0.290	0.424	5e-56
322788189	1004	hypothetical protein SINV_08318 [Solenop	0.741	0.288	0.424	6e-56
350399130	1026	PREDICTED: hypothetical protein LOC10074	0.741	0.282	0.418	2e-55
340714417	1026	PREDICTED: hypothetical protein LOC10065	0.741	0.282	0.418	2e-55
307176119	945	Zinc finger X-linked protein ZXDB [Campo	0.741	0.306	0.421	9e-55
383863735	1034	PREDICTED: uncharacterized protein LOC10	0.731	0.276	0.416	3e-54
427790989	604	Putative zxd family zinc finger c, parti	0.828	0.536	0.347	5e-48
427792249	591	Putative zxd family zinc finger c, parti	0.828	0.548	0.347	5e-48
301617720	868	PREDICTED: zinc finger protein ZXDC-like	0.670	0.301	0.402	1e-46

>gi|328788295|ref|XP_003251098.1| PREDICTED: hypothetical protein LOC100577295 [Apis mellifera]

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 129/306 (42%), Positives = 171/306 (55%), Gaps = 16/306 (5%)

Query: 79  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 138
           E  I+ AL+ LGI  +     +  +N K   +W CP  +CN     L   K HLL H+  
Sbjct: 448 EMVISNALEELGITDDNLQPVSVNENGK---IWLCPRDDCNRQFSKLYALKGHLLAHYGV 504

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           +PFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 505 RPFKCDFEG-----CAWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTIYNLWSHA 558

Query: 199 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 258
             H +P  + C+   C  KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 559 KLHSRPNRILCQVPDCQEKFQTKRALELHMKTHDQSHAPYICKHEGCGKRYYSSNALTSH 618

Query: 259 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALK 316
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT  GC+  FSS S LK
Sbjct: 619 QRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHIRS-HTGCKPYLCTFQGCQWAFSSSSKLK 677

Query: 317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSS 376
           RH K KH N R F C + +CGK+F+RSEHL+EH L H E +  F C    C   + AKSS
Sbjct: 678 RHQK-KHTNERKFVCDVPSCGKAFMRSEHLKEHRLTHKEGR-YFQCCI--CNAKFSAKSS 733

Query: 377 LYAHLK 382
           LY H+K
Sbjct: 734 LYVHIK 739

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027659|gb|EGI67727.1| Zinc finger X-linked protein ZXDB [Acromyrmex echinatior]

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/306 (42%), Positives = 169/306 (55%), Gaps = 16/306 (5%)

Query: 79  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 138
           E  I+ AL+ LGI  +        ++ K   +W CP   CN     L T K HLL H+  
Sbjct: 422 EIVISNALEELGITDDSLQPLCATEHDK---VWLCPRDGCNRQFGRLYTLKGHLLAHYGV 478

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           +PFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 479 RPFKCDFEG-----CTWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTVYNLWSHA 532

Query: 199 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 258
             H +P  + C+   CG KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 533 KLHNRPNRIVCQVPDCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSH 592

Query: 259 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALK 316
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT   CK  FSS S LK
Sbjct: 593 QRSHSYKEVDIKCSWPGCGKIFDKPCRLKAHMRS-HTGYKPYPCTFQDCKWAFSSSSKLK 651

Query: 317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSS 376
           RH K KH N R F C +  CGK+F+RSEHL+EH L H E +  F C    C   + AKSS
Sbjct: 652 RHQK-KHTNERKFVCDVPDCGKAFMRSEHLKEHRLTHTEGR-FFQCFV--CDARFSAKSS 707

Query: 377 LYAHLK 382
           LY H+K
Sbjct: 708 LYVHIK 713

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788189|gb|EFZ13971.1| hypothetical protein SINV_08318 [Solenopsis invicta]

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 130/306 (42%), Positives = 169/306 (55%), Gaps = 16/306 (5%)

Query: 79  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 138
           E  I+ AL+ LGI  +        ++ K   +W CP   CN     L T K HLL H+  
Sbjct: 422 EIVISNALKELGITDDSLQPLCATEHDK---VWLCPRDGCNRQFGRLYTLKGHLLAHYGI 478

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           +PFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 479 RPFKCDFEG-----CTWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTVYNLWSHA 532

Query: 199 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 258
             H +P  + C+   CG KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 533 KLHSRPNRIICQVPDCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSH 592

Query: 259 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALK 316
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT   CK  FSS S LK
Sbjct: 593 QRSHSYKEVDIKCSWLGCGKIFDKPCRLKAHMRS-HTGYKPYPCTFQDCKWAFSSSSKLK 651

Query: 317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSS 376
           RH K KH N R F C +  CGK+F+RSEHL+EH L H E +  F C    C   + AKSS
Sbjct: 652 RHQK-KHTNERKFVCDVPNCGKAFMRSEHLKEHRLTHTEGR-FFQCFM--CAARFSAKSS 707

Query: 377 LYAHLK 382
           LY H+K
Sbjct: 708 LYVHIK 713

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399130|ref|XP_003485431.1| PREDICTED: hypothetical protein LOC100745564 [Bombus impatiens]

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/306 (41%), Positives = 172/306 (56%), Gaps = 16/306 (5%)

Query: 79  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 138
           E  I+ AL+ LGI+ +     +  ++ K   +W CP  +CN     L   K HLL H+  
Sbjct: 450 EMVISNALEELGISDDNLQPISVNEHGK---IWLCPRDDCNRQFSKLYALKGHLLAHYGV 506

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           +PFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 507 RPFKCDFEG-----CAWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTIYNLWSHA 560

Query: 199 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 258
             H +P  + C+   C  KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 561 KLHTRPNRIVCQVPDCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNALTSH 620

Query: 259 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALK 316
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT  GC+  FSS S LK
Sbjct: 621 QRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHIRS-HTGCKPYLCTFQGCQWAFSSSSKLK 679

Query: 317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSS 376
           RH K KH N R F C + +CGK+F+RSEHL+EH L H E +  F C    C   + AKSS
Sbjct: 680 RHQK-KHTNERKFVCDIPSCGKAFMRSEHLKEHRLTHKEGR-YFQCFI--CNAKFSAKSS 735

Query: 377 LYAHLK 382
           LY H+K
Sbjct: 736 LYVHIK 741

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714417|ref|XP_003395725.1| PREDICTED: hypothetical protein LOC100650640 [Bombus terrestris]

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/306 (41%), Positives = 172/306 (56%), Gaps = 16/306 (5%)

Query: 79  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 138
           E  I+ AL+ LGI+ +     +  ++ K   +W CP  +CN     L   K HLL H+  
Sbjct: 450 EMVISNALEELGISDDNLQPISVNEHGK---IWLCPRDDCNRQFSKLYALKGHLLAHYGV 506

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           +PFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 507 RPFKCDFEG-----CAWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTIYNLWSHA 560

Query: 199 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 258
             H +P  + C+   C  KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 561 KLHTRPNRIVCQVPDCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNALTSH 620

Query: 259 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALK 316
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT  GC+  FSS S LK
Sbjct: 621 QRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHIRS-HTGCKPYLCTFQGCQWAFSSSSKLK 679

Query: 317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSS 376
           RH K KH N R F C + +CGK+F+RSEHL+EH L H E +  F C    C   + AKSS
Sbjct: 680 RHQK-KHTNERKFVCDIPSCGKAFMRSEHLKEHRLTHKEGR-YFQCFI--CNAKFSAKSS 735

Query: 377 LYAHLK 382
           LY H+K
Sbjct: 736 LYVHIK 741

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176119|gb|EFN65817.1| Zinc finger X-linked protein ZXDB [Camponotus floridanus]

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/306 (42%), Positives = 167/306 (54%), Gaps = 16/306 (5%)

Query: 79  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 138
           E  I+ AL+ LGI  +        ++ K   +W CP   CN     L T K HLL H+  
Sbjct: 357 EIVISNALEELGITDDSLQPVNVTEHDK---VWLCPRAGCNRQFGRLYTLKGHLLAHYGV 413

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           +PFKC         C W F+S+ KL RH  +H + +K + C  + CN+RFTT+ NL  H 
Sbjct: 414 RPFKCDFQD-----CTWAFYSEFKLKRHKETHLK-RKDHVCQVEGCNRRFTTVYNLWSHE 467

Query: 199 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 258
             H +P  + C+   CG KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 468 KLHSRPNRIVCQVPNCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSH 527

Query: 259 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALK 316
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT   CK  FSS S LK
Sbjct: 528 QRSHSYKEVDIKCSWPGCGKVFDKPCRLKAHTRS-HTGCKPYHCTFQDCKWAFSSSSKLK 586

Query: 317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSS 376
           RH K KH N R F C    CGK+F+RSEHL+EH L H E +  F C    C   + AKSS
Sbjct: 587 RHQK-KHTNERKFMCDAPDCGKAFMRSEHLKEHRLTHKEGR-FFQCFV--CDARFSAKSS 642

Query: 377 LYAHLK 382
           LY H+K
Sbjct: 643 LYVHIK 648

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863735|ref|XP_003707335.1| PREDICTED: uncharacterized protein LOC100877567 [Megachile rotundata]

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/310 (41%), Positives = 169/310 (54%), Gaps = 24/310 (7%)

Query: 79  EDAITEALQSLGINKEYF----ISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLK 134
           E  I+ AL+ LGI  +      IS  G       ++W CP  +C      L   K HLL 
Sbjct: 448 EMVISNALEELGITDDNLQPISISEQG-------KVWLCPRDDCKRQFSKLYALKGHLLA 500

Query: 135 HFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNL 194
           H+  +PFKC         C W F+S+ KL RH  +H + +K Y C ++ CN+RFTT+ NL
Sbjct: 501 HYGVRPFKCDFEG-----CAWAFYSEFKLKRHKETHLK-RKDYICKREGCNRRFTTIYNL 554

Query: 195 KMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMAS 254
             H   H +P  + C+   C  KFQT +    H+K H    APY+C ++GCGK +Y   +
Sbjct: 555 WSHEKLHSRPNRILCQVPDCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNA 614

Query: 255 LKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSK 312
           L SHQR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT  GC+  FSS 
Sbjct: 615 LTSHQRCHSYKEIDVKCSWPGCGKVFDKPCRLKAHLRS-HTGCKPYLCTFQGCQWAFSSS 673

Query: 313 SALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYV 372
           S LKRH K KH N R F C +  CGK+F+RSEHL+EH L H E +  F C    C   + 
Sbjct: 674 SKLKRHQK-KHTNERKFVCDVPACGKAFMRSEHLKEHRLTHKEGR-YFQCFI--CNAKFS 729

Query: 373 AKSSLYAHLK 382
           AKSSLY H+K
Sbjct: 730 AKSSLYVHIK 739

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427790989|gb|JAA60946.1| Putative zxd family zinc finger c, partial [Rhipicephalus pulchellus]

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 182/357 (50%), Gaps = 33/357 (9%)

Query: 46  GDILENMFVFCVRHAD-VLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISS----- 99
           GD L N+ VF +R  D  L   A  +L V  ++E++   +   +   N E   S      
Sbjct: 87  GDALANL-VFELRAGDDELFGGAERLLCVRDLFEKEDAAKDDTTTTKNAEEPASEEPQAG 145

Query: 100 ---TGGKN---------SKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTT 147
              +G            S  ++ + C +  C+         ++HLL H   +PFKC +  
Sbjct: 146 TFFSGASTVLRMGNPAPSAPRRRFPCTLEGCDRVFERGRQLRVHLLSHAACRPFKCAVDG 205

Query: 148 ANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTL 207
                C W F +++KL RH+ +H E KK + CD + C + FTT+ NL+ HM  HG+P+  
Sbjct: 206 -----CDWAFATEYKLKRHLETH-EGKKDFMCDVEGCGQHFTTVYNLRAHMKLHGRPM-F 258

Query: 208 CCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE 267
            C   GC + F T ++   HL+EH  + APY C  +GCGK++Y   +L SH RVH   PE
Sbjct: 259 GCPSPGCSQVFGTRRKMELHLREHQELDAPYRCTEEGCGKAYYSSNTLASHLRVHQHRPE 318

Query: 268 DLVC--KGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLN 325
           +L C    CG+ F   C+LR H +  H   + + C+   C   F+S S L RH + KH  
Sbjct: 319 ELCCPFPECGRAFGRACKLRLHLRQ-HTGERPYACS--SCSWTFASASKLTRHMR-KHTG 374

Query: 326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
            R + CP   CGK+F+R EHL+ H + H+  +P F C +  C   + AKSSLY HLK
Sbjct: 375 DRRYVCPEPGCGKAFMRPEHLRGHSVVHSGGRP-FACTHPGCSSRFAAKSSLYVHLK 430

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792249|gb|JAA61576.1| Putative zxd family zinc finger c, partial [Rhipicephalus pulchellus]

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 182/357 (50%), Gaps = 33/357 (9%)

Query: 46  GDILENMFVFCVRHAD-VLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISS----- 99
           GD L N+ VF +R  D  L   A  +L V  ++E++   +   +   N E   S      
Sbjct: 87  GDALANL-VFELRAGDDELFGGAERLLCVRDLFEKEDAAKDDTTTTKNAEEPASEEPQAG 145

Query: 100 ---TGGKN---------SKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTT 147
              +G            S  ++ + C +  C+         ++HLL H   +PFKC +  
Sbjct: 146 TFFSGASTVLRMGNPAPSAPRRRFPCTLEGCDRVFERGRQLRVHLLSHAACRPFKCAVDG 205

Query: 148 ANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTL 207
                C W F +++KL RH+ +H E KK + CD + C + FTT+ NL+ HM  HG+P+  
Sbjct: 206 -----CDWAFATEYKLKRHLETH-EGKKDFMCDVEGCGQHFTTVYNLRAHMKLHGRPM-F 258

Query: 208 CCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE 267
            C   GC + F T ++   HL+EH  + APY C  +GCGK++Y   +L SH RVH   PE
Sbjct: 259 GCPSPGCSQVFGTRRKMELHLREHQELDAPYRCTEEGCGKAYYSSNTLASHLRVHQHRPE 318

Query: 268 DLVC--KGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLN 325
           +L C    CG+ F   C+LR H +  H   + + C+   C   F+S S L RH + KH  
Sbjct: 319 ELCCPFPECGRAFGRACKLRLHLRQ-HTGERPYACS--SCSWTFASASKLTRHMR-KHTG 374

Query: 326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
            R + CP   CGK+F+R EHL+ H + H+  +P F C +  C   + AKSSLY HLK
Sbjct: 375 DRRYVCPEPGCGKAFMRPEHLRGHSVVHSGGRP-FACTHPGCSSRFAAKSSLYVHLK 430

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301617720|ref|XP_002938278.1| PREDICTED: zinc finger protein ZXDC-like [Xenopus (Silurana) tropicalis]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/276 (40%), Positives = 150/276 (54%), Gaps = 14/276 (5%)

Query: 110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD-KKPFKCKLTTANNTPCMWGFFSKHKLLRHMT 168
           ++ CP   C          K+HLL H + ++PFKC  T AN   C W F + +KL RH+ 
Sbjct: 192 VFRCPEPGCAKAFDRKQQLKVHLLSHTEGQRPFKC--TVAN---CGWSFTTLYKLKRHLQ 246

Query: 169 SHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHL 228
           SHD+ ++ + CD   C K FTT+ NLK H+  H +     C+   CG  F T  + S H 
Sbjct: 247 SHDK-QRPFSCDVPGCGKSFTTVYNLKAHLKAHEQENLFRCDT--CGESFPTATKLSGHR 303

Query: 229 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLRE 286
           + H     PY C++ GC K+F  + +L SH R HV   E  +C   GC KQ+   CRL+ 
Sbjct: 304 RMHFEPERPYKCEFPGCDKTFITVTALFSHHRAHVREQEQFICSFPGCNKQYDKACRLKI 363

Query: 287 HYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHL 346
           H ++ H   + F C  DGC   F+S S L RH K KH + R +PCP+  CGKSF R+EHL
Sbjct: 364 HLRS-HTGERPFICDFDGCGWSFTSMSKLLRH-KRKHEDDRRYPCPVEGCGKSFTRAEHL 421

Query: 347 QEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
           + H + H   KP F CP   C   + A+SSLY H K
Sbjct: 422 KGHSITHLGTKP-FECPIDGCGAKFSARSSLYIHSK 456

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
RGD|1563355	583	Zxdb "zinc finger, X-linked, d	0.670	0.449	0.399	6.5e-51
RGD|1585677	583	LOC683516 "similar to Zinc fin	0.670	0.449	0.399	6.5e-51
RGD|1585685	583	LOC683508 "similar to Zinc fin	0.670	0.449	0.399	6.5e-51
UNIPROTKB|G3X6Q6	805	LOC510362 "Uncharacterized pro	0.685	0.332	0.385	2.2e-50
MGI|MGI:3694898	873	Zxdb "zinc finger, X-linked, d	0.670	0.300	0.399	3e-50
UNIPROTKB|F1MWD7	749	ZXDC "Uncharacterized protein"	0.667	0.348	0.389	7.7e-50
UNIPROTKB|G3MYH0	760	ZXDC "Uncharacterized protein"	0.667	0.343	0.389	9.6e-50
UNIPROTKB|E2R2S7	779	ZXDB "Uncharacterized protein"	0.685	0.344	0.389	1.3e-49
ZFIN|ZDB-GENE-030131-4816	1231	si:dkey-156n14.3 "si:dkey-156n	0.682	0.216	0.385	1.9e-49
UNIPROTKB|F1PCD4	726	ZXDC "Uncharacterized protein"	0.667	0.359	0.389	2.5e-49

RGD|1563355 Zxdb "zinc finger, X-linked, duplicated B" [Rattus norvegicus (taxid:10116)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 111/278 (39%), Positives = 148/278 (53%)

Query:   110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRH 166
             L+ CP   C  T    +  K+HLL H     ++PFKC L+      C W F + +KL RH
Sbjct:    46 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 100

Query:   167 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 226
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct:   101 LQSHDKLRP-FGCPVEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 157

Query:   227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   158 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 217

Query:   285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE 344
             + H ++ H   + F C  DGC   F+S S L RH K KH + R F CP+  CGKSF R+E
Sbjct:   218 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSFTRAE 275

Query:   345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
             HL+ H + H   KP F CP + C   + A+SSLY H K
Sbjct:   276 HLKGHSITHLGTKP-FVCPVEGCCARFSARSSLYIHSK 312

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1585677 LOC683516 "similar to Zinc finger X-linked protein ZXDB" [Rattus norvegicus (taxid:10116)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 111/278 (39%), Positives = 148/278 (53%)

Query:   110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRH 166
             L+ CP   C  T    +  K+HLL H     ++PFKC L+      C W F + +KL RH
Sbjct:    46 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 100

Query:   167 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 226
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct:   101 LQSHDKLRP-FGCPVEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 157

Query:   227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   158 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 217

Query:   285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE 344
             + H ++ H   + F C  DGC   F+S S L RH K KH + R F CP+  CGKSF R+E
Sbjct:   218 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSFTRAE 275

Query:   345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
             HL+ H + H   KP F CP + C   + A+SSLY H K
Sbjct:   276 HLKGHSITHLGTKP-FVCPVEGCCARFSARSSLYIHSK 312

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1585685 LOC683508 "similar to Zinc finger X-linked protein ZXDB" [Rattus norvegicus (taxid:10116)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 111/278 (39%), Positives = 148/278 (53%)

Query:   110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRH 166
             L+ CP   C  T    +  K+HLL H     ++PFKC L+      C W F + +KL RH
Sbjct:    46 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 100

Query:   167 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 226
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct:   101 LQSHDKLRP-FGCPVEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 157

Query:   227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   158 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 217

Query:   285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE 344
             + H ++ H   + F C  DGC   F+S S L RH K KH + R F CP+  CGKSF R+E
Sbjct:   218 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSFTRAE 275

Query:   345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
             HL+ H + H   KP F CP + C   + A+SSLY H K
Sbjct:   276 HLKGHSITHLGTKP-FVCPVEGCCARFSARSSLYIHSK 312

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3X6Q6 LOC510362 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 512 (185.3 bits), Expect = 2.2e-50, Sum P(2) = 2.2e-50
 Identities = 110/285 (38%), Positives = 149/285 (52%)

Query:   110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRH 166
             L+ CP V C  T    +  K+HLL H     ++PFKC L       C W F + +KL RH
Sbjct:   271 LYLCPEVQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 325

Query:   167 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 226
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + S 
Sbjct:   326 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEETFPTQAKLSA 382

Query:   227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
             H + H     PY C +  C K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   383 HQRSHFEPERPYQCAFSSCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 442

Query:   285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE 344
             + H ++ H   + F C  +GC   F+S S L RH K KH + R F CP+  CGKSF R+E
Sbjct:   443 KIHLRS-HTGERPFLCDFEGCGWNFTSMSKLLRH-KRKHDDDRRFMCPVEGCGKSFTRAE 500

Query:   345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK-HVHSTN 388
             HL+ H + H   KP F CP + C   + A+SSLY H K H+   +
Sbjct:   501 HLKGHSITHLGTKP-FVCPVEGCCARFSARSSLYIHSKKHLQDVD 544

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:3694898 Zxdb "zinc finger, X-linked, duplicated B" [Mus musculus (taxid:10090)]

 Score = 529 (191.3 bits), Expect = 3.0e-50, P = 3.0e-50
 Identities = 111/278 (39%), Positives = 148/278 (53%)

Query:   110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRH 166
             L+ CP   C  T    +  K+HLL H     ++PFKC L+      C W F + +KL RH
Sbjct:   339 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 393

Query:   167 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 226
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct:   394 LQSHDKLRP-FGCPVQGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 450

Query:   227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   451 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 510

Query:   285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE 344
             + H ++ H   + F C  DGC   F+S S L RH K KH + R F CP+  CGKSF R+E
Sbjct:   511 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSFTRAE 568

Query:   345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
             HL+ H + H   KP F CP + C   + A+SSLY H K
Sbjct:   569 HLKGHSITHLGTKP-FVCPVEGCCARFSARSSLYIHSK 605

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MWD7 ZXDC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 520 (188.1 bits), Expect = 7.7e-50, P = 7.7e-50
 Identities = 108/277 (38%), Positives = 146/277 (52%)

Query:   111 WSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRHM 167
             + CP   C       +  ++HLL H     ++PFKC L       C W F + +KL RH+
Sbjct:    96 YRCPEPQCALAFAKKHQLQVHLLTHGSGQGRRPFKCPLDG-----CGWAFTTSYKLKRHL 150

Query:   168 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTH 227
              SHD+ +  + C    C K+FTT+ NLK HM  H +     CE   C  +F T  + S+H
Sbjct:   151 QSHDKLRP-FGCPVGGCGKKFTTVYNLKAHMKAHEQESLFKCEV--CAERFPTHAKLSSH 207

Query:   228 LKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLR 285
              + H     PY CD+ GC K+F  +++L SH R H    E   C   GC KQ+   CRL+
Sbjct:   208 QRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLK 267

Query:   286 EHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEH 345
              H ++ H   + F C  D C   F+S S L RH K KH + R FPCP+  CGKSF R+EH
Sbjct:   268 IHLRS-HTGERPFICDSDSCGWTFTSMSKLLRH-KRKHDDDRRFPCPVEGCGKSFTRAEH 325

Query:   346 LQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
             L+ H + H   KP F CP + C   + A+SSLY H K
Sbjct:   326 LKGHSVTHLGTKP-FACPVEGCCARFSARSSLYIHAK 361

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3MYH0 ZXDC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 520 (188.1 bits), Expect = 9.6e-50, P = 9.6e-50
 Identities = 108/277 (38%), Positives = 146/277 (52%)

Query:   111 WSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRHM 167
             + CP   C       +  ++HLL H     ++PFKC L       C W F + +KL RH+
Sbjct:    97 YRCPEPQCALAFAKKHQLQVHLLTHGSGQGRRPFKCPLDG-----CGWAFTTSYKLKRHL 151

Query:   168 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTH 227
              SHD+ +  + C    C K+FTT+ NLK HM  H +     CE   C  +F T  + S+H
Sbjct:   152 QSHDKLRP-FGCPVGGCGKKFTTVYNLKAHMKAHEQESLFKCEV--CAERFPTHAKLSSH 208

Query:   228 LKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLR 285
              + H     PY CD+ GC K+F  +++L SH R H    E   C   GC KQ+   CRL+
Sbjct:   209 QRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLK 268

Query:   286 EHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEH 345
              H ++ H   + F C  D C   F+S S L RH K KH + R FPCP+  CGKSF R+EH
Sbjct:   269 IHLRS-HTGERPFICDSDSCGWTFTSMSKLLRH-KRKHDDDRRFPCPVEGCGKSFTRAEH 326

Query:   346 LQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
             L+ H + H   KP F CP + C   + A+SSLY H K
Sbjct:   327 LKGHSVTHLGTKP-FACPVEGCCARFSARSSLYIHAK 362

GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0030275 "LRR domain binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R2S7 ZXDB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 520 (188.1 bits), Expect = 1.3e-49, P = 1.3e-49
 Identities = 111/285 (38%), Positives = 149/285 (52%)

Query:   110 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRH 166
             L+ CP   C  T    +  K+HLL H     ++PFKC L       C W F + +KL RH
Sbjct:   246 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 300

Query:   167 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 226
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + S 
Sbjct:   301 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLSA 357

Query:   227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   358 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 417

Query:   285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE 344
             + H ++ H   + F C  DGC   F+S S L RH K KH + R F CP+  CGKSF R+E
Sbjct:   418 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFMCPVEGCGKSFTRAE 475

Query:   345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK-HVHSTN 388
             HL+ H + H   KP F CP + C   + A+SSLY H K H+   +
Sbjct:   476 HLKGHSITHLGTKP-FVCPVEGCCARFSARSSLYIHSKKHLQDVD 519

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-030131-4816 si:dkey-156n14.3 "si:dkey-156n14.3" [Danio rerio (taxid:7955)]

 Score = 511 (184.9 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
 Identities = 109/283 (38%), Positives = 150/283 (53%)

Query:   105 SKKQQL--WSCPIVNCNFTSVNLNTFKIHLLKHF-DKKPFKCKLTTANNTPCMWGFFSKH 161
             +KK  L  + CP   C+ T       KIHL+ H  D++PFKC   T     C W F + +
Sbjct:   480 TKKVSLAKYRCPQPGCSSTFDTRQNLKIHLVVHTEDQRPFKC---TVEG--CDWSFTTSY 534

Query:   162 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 221
             KL RH+ SHD+ +  Y C+ +NC +RFTT+ NLK H+  H +     CE   C  +F+T 
Sbjct:   535 KLKRHLQSHDKVRP-YKCEWENCGRRFTTVYNLKAHVRTHDQENAFVCEV--CSERFRTA 591

Query:   222 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFK 279
              + S H + H     P+ C++ GC K+F   ++L SH R H        C   GC K++ 
Sbjct:   592 TRLSNHQRTHFEPERPHKCEFPGCEKTFITFSALFSHNRTHFREMAQFTCTYPGCDKRYD 651

Query:   280 VPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKS 339
               CRL+ H ++ H   + F C  D C   F+S S L RH K KH + R F C    CGKS
Sbjct:   652 KACRLKIHLRS-HTGERPFVCDSDSCGWTFTSMSKLLRH-KRKHDDDRRFACLEEGCGKS 709

Query:   340 FLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
             F R+EHL+ H + H   KP F CP + C   + A+SSLY H K
Sbjct:   710 FTRAEHLKGHSITHLGTKP-FECPVEGCNAKFSARSSLYIHSK 751

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PCD4 ZXDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 108/277 (38%), Positives = 146/277 (52%)

Query:   111 WSCPIVNCNFTSVNLNTFKIHLLKHFD---KKPFKCKLTTANNTPCMWGFFSKHKLLRHM 167
             + CP   C  +    +  K+HLL H     ++PFKC L       C W F + +KL RH+
Sbjct:    44 YRCPEPQCALSFAKKHQLKVHLLTHGSSQGRRPFKCPLDG-----CGWAFTTSYKLKRHL 98

Query:   168 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTH 227
              SHD+ +  + C    C K+FTT+ NLK HM  H +     CE   C  +F T  + S+H
Sbjct:    99 QSHDKLRP-FGCPVGGCGKKFTTVYNLKAHMKGHEQENLFKCEV--CSERFPTHAKLSSH 155

Query:   228 LKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLR 285
              + H     PY CD+ GC K+F  +++L SH R H    E   C   GC KQ+   CRL+
Sbjct:   156 QRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLK 215

Query:   286 EHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEH 345
              H ++ H   + F C  D C   F+S S L RH K KH + R F CP+  CGKSF R+EH
Sbjct:   216 IHLRS-HTGERPFICDSDSCGWTFTSMSKLLRH-KRKHDDDRRFTCPVEGCGKSFTRAEH 273

Query:   346 LQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
             L+ H + H   KP F CP + C   + A+SSLY H K
Sbjct:   274 LKGHSITHLGTKP-FECPVEGCCARFSARSSLYIHSK 309

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
KOG3608|consensus	467		99.97
KOG3608|consensus	467		99.96
KOG1074|consensus	958		99.95
KOG2462|consensus	279		99.94
KOG2462|consensus	279		99.92
KOG3623|consensus	1007		99.86
KOG3623|consensus	1007		99.86
KOG1074|consensus	958		99.78
KOG3576|consensus	267		99.7
KOG3576|consensus	267		99.6
PLN03086	567	PRLI-interacting factor K; Provisional	99.06
PLN03086	567	PRLI-interacting factor K; Provisional	99.03
PHA00733	128	hypothetical protein	99.02
PHA00733	128	hypothetical protein	98.99
PHA02768	55	hypothetical protein; Provisional	98.72
KOG3993|consensus	500		98.66
PHA02768	55	hypothetical protein; Provisional	98.64
KOG3993|consensus	500		98.55
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.48
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.28
PHA00616	44	hypothetical protein	98.15
PHA00616	44	hypothetical protein	98.15
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.04
PHA00732	79	hypothetical protein	98.03
PHA00732	79	hypothetical protein	97.96
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.95
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.64
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.6
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.6
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.54
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.52
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.51
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.49
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.33
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.3
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.16
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.1
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.97
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.86
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.74
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.47
smart00355	26	ZnF_C2H2 zinc finger.	96.28
KOG2231|consensus	669		96.18
KOG4173|consensus	253		96.13
KOG1146|consensus	1406		96.07
KOG4173|consensus	253		95.91
smart00355	26	ZnF_C2H2 zinc finger.	95.9
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.77
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.75
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.62
KOG2231|consensus	669		95.57
COG5048	467	FOG: Zn-finger [General function prediction only]	95.51
KOG1146|consensus	1406		95.43
COG5048	467	FOG: Zn-finger [General function prediction only]	94.94
KOG2482|consensus	423		94.78
PRK04860	160	hypothetical protein; Provisional	94.43
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.01
PRK04860	160	hypothetical protein; Provisional	93.84
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.67
KOG2482|consensus	423		92.44
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	91.48
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.5
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	90.33
KOG4377|consensus	480		89.99
KOG4124|consensus	442		89.64
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	89.61
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	89.19
KOG2893|consensus	341		88.84
KOG2785|consensus	390		88.5
COG4049	65	Uncharacterized protein containing archaeal-type C	86.47
KOG2785|consensus	390		85.67
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	85.23
KOG2893|consensus	341		84.91
COG4049	65	Uncharacterized protein containing archaeal-type C	83.27

>KOG3608|consensus

Probab=99.97  E-value=2.5e-31  Score=227.43  Aligned_cols=261  Identities=25%  Similarity=0.469  Sum_probs=229.4

Q ss_pred             CCceecCCCCCCCcccC-hHHHHHHHHhcC-----------------C-----------------CCcccCccCCCCCCc
Q psy11069        108 QQLWSCPIVNCNFTSVN-LNTFKIHLLKHF-----------------D-----------------KKPFKCKLTTANNTP  152 (391)
Q Consensus       108 ~~~~~C~~~~C~~~f~~-~~~l~~H~~~h~-----------------~-----------------~~~~~C~~~~~~~~~  152 (391)
                      ...+.|.|..|++...+ ...|.+|+-.|-                 +                 ...|.|.+     ..
T Consensus        67 ~de~qC~w~~C~f~~~~~s~~l~RHvy~H~y~~~l~q~G~~al~~~~dig~c~~~f~~~~~ip~~g~~f~C~W-----ed  141 (467)
T KOG3608|consen   67 TDEHQCTWNSCDFRTENSSADLIRHVYFHCYHTKLKQQGKLALDLHPDIGACTAPFRLMEKIPALGQNFRCGW-----ED  141 (467)
T ss_pred             ccceeEEeccCCccccchHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCcCcccCCcchhhccccchhhhccCh-----hh
Confidence            44799999999999887 588999987652                 0                 01244544     55


Q ss_pred             cccccCCHHHHHHHHhhcCC------------CCCcccccccccccccCCHHHHHHHHHHcCCCCccccccccccccccC
Q psy11069        153 CMWGFFSKHKLLRHMTSHDE------------DKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQT  220 (391)
Q Consensus       153 C~~~f~~~~~l~~H~~~h~~------------~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  220 (391)
                      |+..|.+...|..|+..|..            ++..+.|.|..|-+.|.+++.|+.|++.|.+++...|+.  |+..|++
T Consensus       142 Ce~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~--Cg~~F~~  219 (467)
T KOG3608|consen  142 CEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPH--CGELFRT  219 (467)
T ss_pred             cCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecch--HHHHhcc
Confidence            99999999999999876642            224578999999999999999999999999999999999  9999999


Q ss_pred             chHHHHHHhHhcC-CCCCeeccCCCCCccccchhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccc
Q psy11069        221 MKQYSTHLKEHSN-VSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFK  299 (391)
Q Consensus       221 ~~~l~~H~~~h~~-~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~  299 (391)
                      ...|..|++..+. ...+|.|..  |.|.|.+...|..|+..|.   ..|+|+.|+.+....++|..|++..|...+||+
T Consensus       220 ~tkl~DH~rRqt~l~~n~fqC~~--C~KrFaTeklL~~Hv~rHv---n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfK  294 (467)
T KOG3608|consen  220 KTKLFDHLRRQTELNTNSFQCAQ--CFKRFATEKLLKSHVVRHV---NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFK  294 (467)
T ss_pred             ccHHHHHHHhhhhhcCCchHHHH--HHHHHhHHHHHHHHHHHhh---hcccccccccCCCChHHHHHHHHhhhccCCCcc
Confidence            9999999986542 245899996  9999999999999999994   469999999999999999999999999999999


Q ss_pred             cccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhc-CC-CCceeccCcCcccccccchhH
Q psy11069        300 CTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN-EN-KPKFTCPYQDCLMSYVAKSSL  377 (391)
Q Consensus       300 C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~-~~-~~~~~C~~~~C~~~f~~~~~L  377 (391)
                      |..  |++.|.+.+.|.+|.. .|+ +-.|.|..++|.++|.+...|.+|++.++ |. .++|.|-.  |++.|++-.+|
T Consensus       295 Cd~--Cd~~c~~esdL~kH~~-~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~--Cdr~ft~G~~L  368 (467)
T KOG3608|consen  295 CDE--CDTRCVRESDLAKHVQ-VHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHC--CDRFFTSGKSL  368 (467)
T ss_pred             ccc--hhhhhccHHHHHHHHH-hcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeec--chhhhccchhH
Confidence            977  9999999999999999 688 77899999999999999999999999887 32 34799999  99999999999


Q ss_pred             HHHHHhhcC
Q psy11069        378 YAHLKHVHS  386 (391)
Q Consensus       378 ~~H~~~~H~  386 (391)
                      .+|++..|+
T Consensus       369 ~~HL~kkH~  377 (467)
T KOG3608|consen  369 SAHLMKKHG  377 (467)
T ss_pred             HHHHHHhhc
Confidence            999999986

>KOG3608|consensus

Probab=99.96  E-value=2.2e-29  Score=215.51  Aligned_cols=233  Identities=23%  Similarity=0.489  Sum_probs=206.2

Q ss_pred             CCCCceecCCCCCCCcccChHHHHHHHHhcCC------------CC-cccCccCCCCCCccccccCCHHHHHHHHhhcCC
Q psy11069        106 KKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFD------------KK-PFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE  172 (391)
Q Consensus       106 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~------------~~-~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~  172 (391)
                      .....|.|.|.+|+..|.+...|..|+..|..            ++ .+.|.+.+     |-+.|.++..|++|++.|.+
T Consensus       130 ~~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~-----Ct~~~~~k~~LreH~r~Hs~  204 (467)
T KOG3608|consen  130 ALGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAM-----CTKHMGNKYRLREHIRTHSN  204 (467)
T ss_pred             cchhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchh-----hhhhhccHHHHHHHHHhcCC
Confidence            34567999999999999999999999988742            22 25676544     99999999999999999999


Q ss_pred             CCCcccccccccccccCCHHHHHHHHHHcC--CCCccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCcccc
Q psy11069        173 DKKCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFY  250 (391)
Q Consensus       173 ~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~  250 (391)
                      + +...|.  .||..|.++..|..|++..+  ...+|.|..  |.+.|.+...|..|+..|..   .|+|++  |+.+..
T Consensus       205 e-KvvACp--~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~--C~KrFaTeklL~~Hv~rHvn---~ykCpl--Cdmtc~  274 (467)
T KOG3608|consen  205 E-KVVACP--HCGELFRTKTKLFDHLRRQTELNTNSFQCAQ--CFKRFATEKLLKSHVVRHVN---CYKCPL--CDMTCS  274 (467)
T ss_pred             C-eEEecc--hHHHHhccccHHHHHHHhhhhhcCCchHHHH--HHHHHhHHHHHHHHHHHhhh---cccccc--cccCCC
Confidence            8 544555  99999999999999998754  456899999  99999999999999999974   799997  999999


Q ss_pred             chhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCC--Cc
Q psy11069        251 LMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNM--RM  328 (391)
Q Consensus       251 ~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~--~~  328 (391)
                      ..++|..|++..|...+||+|..|++.|.+.+.|.+|.. +|+ +..|+|..++|.++|.+...|++|++.+|.+.  .+
T Consensus       275 ~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~-~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~  352 (467)
T KOG3608|consen  275 SASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQ-VHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPIL  352 (467)
T ss_pred             ChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHH-hcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Confidence            999999999998788999999999999999999999988 898 66899999999999999999999999888654  56


Q ss_pred             cCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      |.|.+  |++.|++..+|.+|++.-++-+
T Consensus       353 Y~CH~--Cdr~ft~G~~L~~HL~kkH~f~  379 (467)
T KOG3608|consen  353 YACHC--CDRFFTSGKSLSAHLMKKHGFR  379 (467)
T ss_pred             eeeec--chhhhccchhHHHHHHHhhccc
Confidence            99998  9999999999999998766543

>KOG1074|consensus

Probab=99.95  E-value=2.4e-29  Score=237.32  Aligned_cols=196  Identities=23%  Similarity=0.432  Sum_probs=156.0

Q ss_pred             ccccccccCCHHHHHHHHHHcCCCCccccccccccccccCchHHHHHHhHhcCC---CCCeecc---CCCCCccccchhh
Q psy11069        181 QKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCD---YKGCGKSFYLMAS  254 (391)
Q Consensus       181 c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---~~~~~C~---~~~C~~~f~~~~~  254 (391)
                      |-+|.++...+++|+.|+++|+|++||+|.+  |++.|.++.+|+.|+-.|...   ..++.|+   +  |-+.|...-.
T Consensus       608 CiiC~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i--c~~kftn~V~  683 (958)
T KOG1074|consen  608 CIICLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI--CQKKFTNAVT  683 (958)
T ss_pred             eeeeeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccccCccccccccCCchhh--hccccccccc
Confidence            8899999999999999999999999999999  999999999999999988642   2458888   7  9999999999


Q ss_pred             HhccccccCCCCC------------ccccCcccccCCChhHHHHHHHHhcC----------------CCC----cccccc
Q psy11069        255 LKSHQRVHVTNPE------------DLVCKGCGKQFKVPCRLREHYKAVHE----------------STK----NFKCTH  302 (391)
Q Consensus       255 l~~H~~~h~~~~~------------~~~C~~C~~~f~~~~~l~~H~~~~H~----------------~~~----~~~C~~  302 (391)
                      |..|+++|.++..            .-+|..|.+.|.....+..++. .|.                .+.    +..+..
T Consensus       684 lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~s-e~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~  762 (958)
T KOG1074|consen  684 LPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQIS-EQPSPESEPDEQMDERTETEELDVTPPPPENS  762 (958)
T ss_pred             ccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhh-ccCCcccCCcccccccccccccccCCCccccc
Confidence            9999999963322            2469999999988888888865 441                111    334433


Q ss_pred             CCcCccccCHHHHHHhhhcc----------------------CCC-----------------------------------
Q psy11069        303 DGCKLLFSSKSALKRHNKSK----------------------HLN-----------------------------------  325 (391)
Q Consensus       303 ~~C~~~f~~~~~l~~H~~~~----------------------H~~-----------------------------------  325 (391)
                        |+..+.....+..+-.+.                      +++                                   
T Consensus       763 --~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg  840 (958)
T KOG1074|consen  763 --CGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEG  840 (958)
T ss_pred             --cccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccccccccc
Confidence              666665544443332110                      000                                   


Q ss_pred             ------------------------------------CCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCccc
Q psy11069        326 ------------------------------------MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLM  369 (391)
Q Consensus       326 ------------------------------------~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~  369 (391)
                                                          .....|.+  |++.|...++|..|+|+|+++|| |.|..  |++
T Consensus       841 ~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~v--Cgk~FsSSsALqiH~rTHtg~KP-F~C~f--C~~  915 (958)
T KOG1074|consen  841 LATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNV--CGKQFSSSAALEIHMRTHTGPKP-FFCHF--CEE  915 (958)
T ss_pred             cccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhcc--chhcccchHHHHHhhhcCCCCCC-ccchh--hhh
Confidence                                                01267998  99999999999999999999995 99999  999


Q ss_pred             ccccchhHHHHHHhhcCCC
Q psy11069        370 SYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       370 ~f~~~~~L~~H~~~~H~~~  388 (391)
                      .|.++.+|+.||.+|+...
T Consensus       916 aFttrgnLKvHMgtH~w~q  934 (958)
T KOG1074|consen  916 AFTTRGNLKVHMGTHMWVQ  934 (958)
T ss_pred             hhhhhhhhhhhhccccccC
Confidence            9999999999999998654

>KOG2462|consensus

Probab=99.94  E-value=2.8e-27  Score=198.05  Aligned_cols=134  Identities=34%  Similarity=0.649  Sum_probs=105.0

Q ss_pred             CeeccCCCCCccccchhhHhccccccCC--CCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHH
Q psy11069        237 PYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSA  314 (391)
Q Consensus       237 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  314 (391)
                      .|.|.  +|++.+.+..+|.+|..+|-.  ..+.+.|+.||+.|.+...|..|++ +|+  -+++|.+  ||+.|...+-
T Consensus       130 r~~c~--eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHir-TH~--l~c~C~i--CGKaFSRPWL  202 (279)
T KOG2462|consen  130 RYKCP--ECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIR-THT--LPCECGI--CGKAFSRPWL  202 (279)
T ss_pred             ceecc--ccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhh-ccC--CCccccc--ccccccchHH
Confidence            35554  355555555555555555522  3466888888888888888888887 776  5688877  8888888888


Q ss_pred             HHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHh
Q psy11069        315 LKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKH  383 (391)
Q Consensus       315 l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  383 (391)
                      |+-|+|+ |+|||||.|+.  |+++|.++++|+.||++|.+.| .|+|..  |+|+|..++.|.+|...
T Consensus       203 LQGHiRT-HTGEKPF~C~h--C~kAFADRSNLRAHmQTHS~~K-~~qC~~--C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  203 LQGHIRT-HTGEKPFSCPH--CGKAFADRSNLRAHMQTHSDVK-KHQCPR--CGKSFALKSYLNKHSES  265 (279)
T ss_pred             hhccccc-ccCCCCccCCc--ccchhcchHHHHHHHHhhcCCc-cccCcc--hhhHHHHHHHHHHhhhh
Confidence            8888885 88888888887  9999999889999999888888 588988  99999888888888753

>KOG2462|consensus

Probab=99.92  E-value=3e-26  Score=191.86  Aligned_cols=106  Identities=37%  Similarity=0.752  Sum_probs=78.8

Q ss_pred             CCCeeccCCCCCccccchhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHH
Q psy11069        235 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSA  314 (391)
Q Consensus       235 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  314 (391)
                      .+.+.|.+  |++.|.+...|..|+++|.   -+.+|.+|||.|.....|..|+| .|+|||||.|+.  |++.|.++++
T Consensus       159 ~ka~~C~~--C~K~YvSmpALkMHirTH~---l~c~C~iCGKaFSRPWLLQGHiR-THTGEKPF~C~h--C~kAFADRSN  230 (279)
T KOG2462|consen  159 KKAFSCKY--CGKVYVSMPALKMHIRTHT---LPCECGICGKAFSRPWLLQGHIR-THTGEKPFSCPH--CGKAFADRSN  230 (279)
T ss_pred             cccccCCC--CCceeeehHHHhhHhhccC---CCcccccccccccchHHhhcccc-cccCCCCccCCc--ccchhcchHH
Confidence            34567765  7777777777777777772   46777777777777777777777 777777777776  7777777777


Q ss_pred             HHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHH
Q psy11069        315 LKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML  351 (391)
Q Consensus       315 l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~  351 (391)
                      |+.||++ |.+.|.|+|..  |+|.|...+.|.+|..
T Consensus       231 LRAHmQT-HS~~K~~qC~~--C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  231 LRAHMQT-HSDVKKHQCPR--CGKSFALKSYLNKHSE  264 (279)
T ss_pred             HHHHHHh-hcCCccccCcc--hhhHHHHHHHHHHhhh
Confidence            7777774 77777777776  7777777777777754

>KOG3623|consensus

Probab=99.86  E-value=2e-22  Score=187.72  Aligned_cols=111  Identities=30%  Similarity=0.619  Sum_probs=96.1

Q ss_pred             CCCceecCCCCCCCcccChHHHHHHHHh-c-CCCCcccCccCCCCCCccccccCCHHHHHHHHhhcCCCC----------
Q psy11069        107 KQQLWSCPIVNCNFTSVNLNTFKIHLLK-H-FDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDK----------  174 (391)
Q Consensus       107 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~----------  174 (391)
                      -..+.+|++  |...+.....|+.|++- | ..+..|.|.+       |...|..+..|.+||.+|....          
T Consensus       207 fsqlltcpy--cdrgykrltslkeHikyrhekne~nfsC~l-------CsytFAyRtQLErhm~~hkpg~dqa~sltqsa  277 (1007)
T KOG3623|consen  207 FSQLLTCPY--CDRGYKRLTSLKEHIKYRHEKNEPNFSCML-------CSYTFAYRTQLERHMQLHKPGGDQAISLTQSA  277 (1007)
T ss_pred             hhhhhcchh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchh-------hhhhhhhHHHHHHHHHhhcCCCcccccccchh
Confidence            356689996  99999999999999875 4 3456699999       9999999999999999886421          


Q ss_pred             --CcccccccccccccCCHHHHHHHHHHcCCCCccccccccccccccCchHHHHHHhH
Q psy11069        175 --KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKE  230 (391)
Q Consensus       175 --~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~  230 (391)
                        +.|+|.  .|+|.|..+..|+.|+|+|.|++||.|..  |.+.|.....+..|+-.
T Consensus       278 ~lRKFKCt--ECgKAFKfKHHLKEHlRIHSGEKPfeCpn--CkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  278 LLRKFKCT--ECGKAFKFKHHLKEHLRIHSGEKPFECPN--CKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             hhcccccc--ccchhhhhHHHHHhhheeecCCCCcCCcc--cccccccCCcccccccc
Confidence              225555  99999999999999999999999999999  99999999999999754

>KOG3623|consensus

Probab=99.86  E-value=4.7e-22  Score=185.28  Aligned_cols=109  Identities=28%  Similarity=0.549  Sum_probs=94.2

Q ss_pred             cccCccCCCCCCccccccCCHHHHHHHHhhcCCC-CCcccccccccccccCCHHHHHHHHHHcCC-------------CC
Q psy11069        140 PFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED-KKCYPCDQKNCNKRFTTLSNLKMHMVRHGK-------------PL  205 (391)
Q Consensus       140 ~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~-~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~-------------~~  205 (391)
                      ...|++       |++.+.....|+.|++.-+.. ...|.|.  .|.++|..+..|.+|+.+|..             .+
T Consensus       210 lltcpy-------cdrgykrltslkeHikyrhekne~nfsC~--lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lR  280 (1007)
T KOG3623|consen  210 LLTCPY-------CDRGYKRLTSLKEHIKYRHEKNEPNFSCM--LCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLR  280 (1007)
T ss_pred             hhcchh-------HHHHHHHHHHHHHHHHHHHhhCCCCCcch--hhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhc
Confidence            367888       999999999999999765443 3446655  999999999999999999853             35


Q ss_pred             ccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhHhcccccc
Q psy11069        206 TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH  262 (391)
Q Consensus       206 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h  262 (391)
                      .|+|.+  |++.|..+..|+.|+++|.| ++||.|+  .|+|.|....++..|+...
T Consensus       281 KFKCtE--CgKAFKfKHHLKEHlRIHSG-EKPfeCp--nCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  281 KFKCTE--CGKAFKFKHHLKEHLRIHSG-EKPFECP--NCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             cccccc--cchhhhhHHHHHhhheeecC-CCCcCCc--ccccccccCCccccccccc
Confidence            699999  99999999999999999997 9999998  5999999999999997643

>KOG1074|consensus

Probab=99.78  E-value=4.4e-20  Score=175.19  Aligned_cols=108  Identities=27%  Similarity=0.555  Sum_probs=79.9

Q ss_pred             cccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCC----CccCCC---CCCCCcccC
Q psy11069        269 LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNM----RMFPCP---LVTCGKSFL  341 (391)
Q Consensus       269 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~----~~~~C~---~~~C~~~f~  341 (391)
                      -.|-+|.++..-++.|+.|++ .|+|+|||+|.+  ||+.|.++.+|+.||- +|...    -.|.|+   +  |-+.|.
T Consensus       606 NqCiiC~rVlSC~saLqmHyr-tHtGERPFkCKi--CgRAFtTkGNLkaH~~-vHka~p~~R~q~ScP~~~i--c~~kft  679 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYR-THTGERPFKCKI--CGRAFTTKGNLKAHMS-VHKAKPPARVQFSCPSTFI--CQKKFT  679 (958)
T ss_pred             cceeeeeecccchhhhhhhhh-cccCcCcccccc--ccchhccccchhhccc-ccccCccccccccCCchhh--hccccc
Confidence            568888888888888888877 788888888877  8888888888888887 46543    346677   7  888888


Q ss_pred             ChHHHHHHHHHhcCCC-C-----------ceeccCcCcccccccchhHHHHHHhh
Q psy11069        342 RSEHLQEHMLQHNENK-P-----------KFTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       342 ~~~~L~~H~~~h~~~~-~-----------~~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      ....|..|++.|.+.. +           .=+|+.  |.+.|.....+..++-.+
T Consensus       680 n~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~--~qk~~~~a~~f~~~~se~  732 (958)
T KOG1074|consen  680 NAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSS--CQKTFSDARSFSQQISEQ  732 (958)
T ss_pred             ccccccceEEeecCCCCCCCcccccccchhcccch--hhhcccccccchhhhhcc
Confidence            8888888888876321 1           235777  888887777777776665

>KOG3576|consensus

Probab=99.70  E-value=7.2e-18  Score=134.32  Aligned_cols=114  Identities=30%  Similarity=0.595  Sum_probs=94.8

Q ss_pred             CCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHH
Q psy11069        266 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEH  345 (391)
Q Consensus       266 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  345 (391)
                      ...|.|.+|++.|.....|.+|++ -|...+.|-|..  ||+.|.....|++|+++ |++.+||+|..  |+++|+++-+
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~k-ch~~vkr~lct~--cgkgfndtfdlkrh~rt-htgvrpykc~~--c~kaftqrcs  188 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLK-CHSDVKRHLCTF--CGKGFNDTFDLKRHTRT-HTGVRPYKCSL--CEKAFTQRCS  188 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhh-hccHHHHHHHhh--ccCcccchhhhhhhhcc-ccCccccchhh--hhHHHHhhcc
Confidence            346888888888888888888887 888888888887  88888888888888884 88888888887  8888888888


Q ss_pred             HHHHHHHhcCCC----------CceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        346 LQEHMLQHNENK----------PKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       346 L~~H~~~h~~~~----------~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      |..|++..+|..          ..|.|..  ||.+-.....+..|++.||+.
T Consensus       189 leshl~kvhgv~~~yaykerr~kl~vced--cg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  189 LESHLKKVHGVQHQYAYKERRAKLYVCED--CGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             HHHHHHHHcCchHHHHHHHhhhheeeecc--cCCCCCChhHHHHHHHhcCCC
Confidence            888887766532          1588977  998888888888899888875

>KOG3576|consensus

Probab=99.60  E-value=2.2e-16  Score=125.90  Aligned_cols=115  Identities=29%  Similarity=0.614  Sum_probs=74.8

Q ss_pred             CCeeccCCCCCccccchhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHH
Q psy11069        236 APYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSAL  315 (391)
Q Consensus       236 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l  315 (391)
                      ..|.|.+  |++.|.....|.+|++-| ...+.|.|..||+.|...-.|++|++ .|+|.+||+|..  |+++|..+-+|
T Consensus       116 d~ftCrv--CgK~F~lQRmlnrh~kch-~~vkr~lct~cgkgfndtfdlkrh~r-thtgvrpykc~~--c~kaftqrcsl  189 (267)
T KOG3576|consen  116 DSFTCRV--CGKKFGLQRMLNRHLKCH-SDVKRHLCTFCGKGFNDTFDLKRHTR-THTGVRPYKCSL--CEKAFTQRCSL  189 (267)
T ss_pred             Ceeeeeh--hhhhhhHHHHHHHHhhhc-cHHHHHHHhhccCcccchhhhhhhhc-cccCccccchhh--hhHHHHhhccH
Confidence            3466665  666666666666666666 44455666666666666666666665 666666666655  66666666666


Q ss_pred             HHhhhccCC----------CCCccCCCCCCCCcccCChHHHHHHHHHhcCCCC
Q psy11069        316 KRHNKSKHL----------NMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKP  358 (391)
Q Consensus       316 ~~H~~~~H~----------~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~  358 (391)
                      ..|++.+|.          ..+.|.|.-  ||..-.....+..|+..|+..-|
T Consensus       190 eshl~kvhgv~~~yaykerr~kl~vced--cg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  190 ESHLKKVHGVQHQYAYKERRAKLYVCED--CGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             HHHHHHHcCchHHHHHHHhhhheeeecc--cCCCCCChhHHHHHHHhcCCCCH
Confidence            666665554          245677874  88887778888888877766543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.06  E-value=9.8e-10  Score=104.53  Aligned_cols=150  Identities=23%  Similarity=0.523  Sum_probs=114.9

Q ss_pred             ccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhHhccccccCCCCCccccCcccccCCChhHHH
Q psy11069        206 TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLR  285 (391)
Q Consensus       206 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~  285 (391)
                      ...|..  |..... ...|..|.....  ...-.|+..+|+..|. +..+..|          +.|+.|++.|. ...|.
T Consensus       407 ~V~C~N--C~~~i~-l~~l~lHe~~C~--r~~V~Cp~~~Cg~v~~-r~el~~H----------~~C~~Cgk~f~-~s~Le  469 (567)
T PLN03086        407 TVECRN--CKHYIP-SRSIALHEAYCS--RHNVVCPHDGCGIVLR-VEEAKNH----------VHCEKCGQAFQ-QGEME  469 (567)
T ss_pred             eEECCC--CCCccc-hhHHHHHHhhCC--CcceeCCcccccceee-ccccccC----------ccCCCCCCccc-hHHHH
Confidence            346887  877765 456668875543  3445676335999883 3333333          58999999996 67899


Q ss_pred             HHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccC----------ChHHHHHHHHHhcC
Q psy11069        286 EHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFL----------RSEHLQEHMLQHNE  355 (391)
Q Consensus       286 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~----------~~~~L~~H~~~h~~  355 (391)
                      .|++ .|.  +++.|+   |++.+ .+..|..|+. .|...+++.|.+  |++.|.          ....|..|.... +
T Consensus       470 kH~~-~~H--kpv~Cp---Cg~~~-~R~~L~~H~~-thCp~Kpi~C~f--C~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G  538 (567)
T PLN03086        470 KHMK-VFH--EPLQCP---CGVVL-EKEQMVQHQA-STCPLRLITCRF--CGDMVQAGGSAMDVRDRLRGMSEHESIC-G  538 (567)
T ss_pred             HHHH-hcC--CCccCC---CCCCc-chhHHHhhhh-ccCCCCceeCCC--CCCccccCccccchhhhhhhHHHHHHhc-C
Confidence            9988 553  789995   99755 6799999998 599999999998  999995          245899999986 8


Q ss_pred             CCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        356 NKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       356 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      .+ ++.|..  ||+.+.. ..|..|+-..|..
T Consensus       539 ~r-t~~C~~--Cgk~Vrl-rdm~~H~~~~h~~  566 (567)
T PLN03086        539 SR-TAPCDS--CGRSVML-KEMDIHQIAVHQK  566 (567)
T ss_pred             Cc-ceEccc--cCCeeee-hhHHHHHHHhhcC
Confidence            88 599988  9999875 5688999988864

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.03  E-value=8e-10  Score=105.12  Aligned_cols=146  Identities=20%  Similarity=0.484  Sum_probs=109.8

Q ss_pred             ccccccccCCHHHHHHHHHHcCCCCccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhHhcccc
Q psy11069        181 QKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQR  260 (391)
Q Consensus       181 c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~  260 (391)
                      |+.|..... ...|..|...... ....|+..+|+..|.. ..+          +..+.|..  |++.|. ...|..|+.
T Consensus       410 C~NC~~~i~-l~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~r-~el----------~~H~~C~~--Cgk~f~-~s~LekH~~  473 (567)
T PLN03086        410 CRNCKHYIP-SRSIALHEAYCSR-HNVVCPHDGCGIVLRV-EEA----------KNHVHCEK--CGQAFQ-QGEMEKHMK  473 (567)
T ss_pred             CCCCCCccc-hhHHHHHHhhCCC-cceeCCcccccceeec-ccc----------ccCccCCC--CCCccc-hHHHHHHHH
Confidence            447877654 4556688765432 3456774459998843 222          34468986  999996 678999999


Q ss_pred             ccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCcccc----------CHHHHHHhhhccCCCCCccC
Q psy11069        261 VHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFS----------SKSALKRHNKSKHLNMRMFP  330 (391)
Q Consensus       261 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~----------~~~~l~~H~~~~H~~~~~~~  330 (391)
                      +++   .++.|+ ||+.+ .+..|..|+. .|...+++.|.+  |++.|.          ....|..|...  .+.+++.
T Consensus       474 ~~H---kpv~Cp-Cg~~~-~R~~L~~H~~-thCp~Kpi~C~f--C~~~v~~g~~~~d~~d~~s~Lt~HE~~--CG~rt~~  543 (567)
T PLN03086        474 VFH---EPLQCP-CGVVL-EKEQMVQHQA-STCPLRLITCRF--CGDMVQAGGSAMDVRDRLRGMSEHESI--CGSRTAP  543 (567)
T ss_pred             hcC---CCccCC-CCCCc-chhHHHhhhh-ccCCCCceeCCC--CCCccccCccccchhhhhhhHHHHHHh--cCCcceE
Confidence            984   689999 99755 6789999976 899999999998  999985          24589999884  4899999


Q ss_pred             CCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        331 CPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       331 C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      |..  ||+.|..+ +|..|+...|.
T Consensus       544 C~~--Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        544 CDS--CGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             ccc--cCCeeeeh-hHHHHHHHhhc
Confidence            987  99988765 57888876543

>PHA00733 hypothetical protein

Probab=99.02  E-value=3.4e-10  Score=87.74  Aligned_cols=82  Identities=22%  Similarity=0.357  Sum_probs=52.4

Q ss_pred             CCccccccCCcCccccCHHHHHHh------hhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcc
Q psy11069        295 TKNFKCTHDGCKLLFSSKSALKRH------NKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCL  368 (391)
Q Consensus       295 ~~~~~C~~~~C~~~f~~~~~l~~H------~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~  368 (391)
                      .+++.|.+  |+..|.....|..|      +.  +.+.+||.|+.  |++.|.+...|..|++.|  +. +|.|+.  |+
T Consensus        38 ~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~--~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h--~~-~~~C~~--Cg  106 (128)
T PHA00733         38 QKRLIRAV--VKTLIYNPQLLDESSYLYKLLT--SKAVSPYVCPL--CLMPFSSSVSLKQHIRYT--EH-SKVCPV--CG  106 (128)
T ss_pred             hhhHHHHH--HhhhccChhhhcchHHHHhhcc--cCCCCCccCCC--CCCcCCCHHHHHHHHhcC--Cc-CccCCC--CC
Confidence            34455544  55555544443333      22  23466777776  777777777777777765  23 377777  77


Q ss_pred             cccccchhHHHHHHhhcCC
Q psy11069        369 MSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       369 ~~f~~~~~L~~H~~~~H~~  387 (391)
                      +.|.....|..|++..|+.
T Consensus       107 K~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        107 KEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             CccCCHHHHHHHHHHhcCc
Confidence            7777777777777777765

>PHA00733 hypothetical protein

Probab=98.99  E-value=6.9e-10  Score=86.04  Aligned_cols=85  Identities=22%  Similarity=0.405  Sum_probs=65.6

Q ss_pred             CCCccccCcccccCCChhHHHHH--HH--HhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCccc
Q psy11069        265 NPEDLVCKGCGKQFKVPCRLREH--YK--AVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSF  340 (391)
Q Consensus       265 ~~~~~~C~~C~~~f~~~~~l~~H--~~--~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f  340 (391)
                      ..+++.|.+|...|.....|..|  +.  ..+.+.+||.|+.  |++.|.+...|..|++. |  ..+|.|..  |++.|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~-h--~~~~~C~~--CgK~F  109 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPL--CLMPFSSSVSLKQHIRY-T--EHSKVCPV--CGKEF  109 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCC--CCCcCCCHHHHHHHHhc-C--CcCccCCC--CCCcc
Confidence            34678888888888877766665  11  1334578899977  99999999999999883 5  35689997  99999


Q ss_pred             CChHHHHHHHHHhcCC
Q psy11069        341 LRSEHLQEHMLQHNEN  356 (391)
Q Consensus       341 ~~~~~L~~H~~~h~~~  356 (391)
                      .....|.+|+...|+.
T Consensus       110 ~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        110 RNTDSTLDHVCKKHNI  125 (128)
T ss_pred             CCHHHHHHHHHHhcCc
Confidence            9999999999887653

>PHA02768 hypothetical protein; Provisional

Probab=98.72  E-value=6.9e-09  Score=65.86  Aligned_cols=44  Identities=18%  Similarity=0.579  Sum_probs=36.2

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHH
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLY  378 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~  378 (391)
                      .|.|+.  ||+.|+....|..|+++|+  + +|+|..  |++.|.+.+.|.
T Consensus         5 ~y~C~~--CGK~Fs~~~~L~~H~r~H~--k-~~kc~~--C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPI--CGEIYIKRKSMITHLRKHN--T-NLKLSN--CKRISLRTGEYI   48 (55)
T ss_pred             ccCcch--hCCeeccHHHHHHHHHhcC--C-cccCCc--ccceecccceeE
Confidence            478887  9999999999999999988  4 488887  999888877664

>KOG3993|consensus

Probab=98.66  E-value=5.7e-09  Score=93.09  Aligned_cols=200  Identities=17%  Similarity=0.232  Sum_probs=115.6

Q ss_pred             ccccccccccccCCHHHHHHHHHHcCCCCccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhHh
Q psy11069        177 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLK  256 (391)
Q Consensus       177 ~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~  256 (391)
                      |.|.  +|...|.+...|.+|.-...-...|+|.+  |++.|.-..+|..|.+.|......-.=..+-=.+...+....+
T Consensus       268 yiCq--LCK~kYeD~F~LAQHrC~RIV~vEYrCPE--C~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~  343 (500)
T KOG3993|consen  268 YICQ--LCKEKYEDAFALAQHRCPRIVHVEYRCPE--CDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQ  343 (500)
T ss_pred             HHHH--HHHHhhhhHHHHhhccCCeeEEeeecCCc--ccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhh
Confidence            5565  88888888888888864444445688888  8888888888888888886421111000000000001111111


Q ss_pred             cccccc-CCCCCccccCcccccCCChhHHHHHHHHhcCCCCc----------------cccccCCcCccccCHHHHHHhh
Q psy11069        257 SHQRVH-VTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKN----------------FKCTHDGCKLLFSSKSALKRHN  319 (391)
Q Consensus       257 ~H~~~h-~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~----------------~~C~~~~C~~~f~~~~~l~~H~  319 (391)
                      .-.+.- -.....|.|..|++.|+....|+.|+...|.....                +-|..  |.-.+.....--.+.
T Consensus       344 ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~--~a~h~~a~~~~g~~v  421 (500)
T KOG3993|consen  344 EAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQA--VATHSSASDSHGDEV  421 (500)
T ss_pred             hccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccc--cccccccccccccce
Confidence            111100 01234799999999999999999997633322211                11222  332222221111111


Q ss_pred             hccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        320 KSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       320 ~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      ..+-.......|++  |+..+.++..--.+.+.-..+. .|.|.+  |.-+|.+...|.+|+..-|..
T Consensus       422 l~~a~sael~~pp~--~~~ppsss~~sgg~~rlg~~~q-~f~~ky--~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  422 LYVAGSAELELPPY--DGSPPSSSGSSGGYGRLGIAEQ-GFTCKY--CPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             eeeeccccccCCCC--CCCCcccCCCCCccccccchhh-cccccc--chHhhhcCcchHhHhhhcChH
Confidence            11001122345777  8888887776666666555556 599999  999999999999999887753

>PHA02768 hypothetical protein; Provisional

Probab=98.64  E-value=1.3e-08  Score=64.67  Aligned_cols=42  Identities=21%  Similarity=0.434  Sum_probs=27.1

Q ss_pred             cccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHH
Q psy11069        269 LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSAL  315 (391)
Q Consensus       269 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l  315 (391)
                      |.|+.||+.|...+.|..|++ +|+  ++|+|..  |++.|...+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r-~H~--k~~kc~~--C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLR-KHN--TNLKLSN--CKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHH-hcC--CcccCCc--ccceeccccee
Confidence            566666666666666666666 565  4666655  66666665554

>KOG3993|consensus

Probab=98.55  E-value=1.2e-08  Score=90.98  Aligned_cols=25  Identities=28%  Similarity=0.677  Sum_probs=13.1

Q ss_pred             ccccccccccccccCchHHHHHHhHhc
Q psy11069        206 TLCCEELGCGRKFQTMKQYSTHLKEHS  232 (391)
Q Consensus       206 ~~~C~~~~C~~~f~~~~~l~~H~~~h~  232 (391)
                      .|.|..  |++.|.....|+.|+.+|+
T Consensus       356 i~~C~~--C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  356 IFSCHT--CGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             eeecHH--hhhhhHHHHHHHHhHHhhh
Confidence            355555  5555555555555555444

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.48  E-value=1.3e-07  Score=51.17  Aligned_cols=26  Identities=42%  Similarity=0.979  Sum_probs=21.6

Q ss_pred             HHHHHHHHhcCCCCceeccCcCccccccc
Q psy11069        345 HLQEHMLQHNENKPKFTCPYQDCLMSYVA  373 (391)
Q Consensus       345 ~L~~H~~~h~~~~~~~~C~~~~C~~~f~~  373 (391)
                      +|.+|+++|++++| |.|+.  |+++|.+
T Consensus         1 ~l~~H~~~H~~~k~-~~C~~--C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKP-YKCPY--CGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSS-EEESS--SSEEESS
T ss_pred             CHHHHhhhcCCCCC-CCCCC--CcCeeCc
Confidence            47889999999884 99988  9988863

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.28  E-value=4.9e-07  Score=48.93  Aligned_cols=26  Identities=31%  Similarity=0.700  Sum_probs=22.6

Q ss_pred             HHHHHHHhcCCCCcccCccCCCCCCccccccCC
Q psy11069        127 TFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFS  159 (391)
Q Consensus       127 ~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~  159 (391)
                      +|.+|+++|++++||.|++       |++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~-------C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPY-------CGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESS-------SSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCC-------CcCeeCc
Confidence            4789999999999999998       9998863

...

>PHA00616 hypothetical protein

Probab=98.15  E-value=1.1e-06  Score=53.09  Aligned_cols=34  Identities=29%  Similarity=0.674  Sum_probs=25.2

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      ||+|+.  ||+.|.+.+.|.+|++.||++++ +.|+.
T Consensus         1 pYqC~~--CG~~F~~~s~l~~H~r~~hg~~~-~~~~~   34 (44)
T PHA00616          1 MYQCLR--CGGIFRKKKEVIEHLLSVHKQNK-LTLEY   34 (44)
T ss_pred             CCccch--hhHHHhhHHHHHHHHHHhcCCCc-cceeE
Confidence            577776  88888888888888877777773 77654

>PHA00616 hypothetical protein

Probab=98.15  E-value=9.4e-07  Score=53.34  Aligned_cols=31  Identities=32%  Similarity=0.535  Sum_probs=28.6

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCCCCCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHSTNKIT  391 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~  391 (391)
                      +|+|+.  ||+.|.+++.|.+|++.||++++.+
T Consensus         1 pYqC~~--CG~~F~~~s~l~~H~r~~hg~~~~~   31 (44)
T PHA00616          1 MYQCLR--CGGIFRKKKEVIEHLLSVHKQNKLT   31 (44)
T ss_pred             CCccch--hhHHHhhHHHHHHHHHHhcCCCccc
Confidence            499999  9999999999999999999998753

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.04  E-value=9.5e-06  Score=52.78  Aligned_cols=51  Identities=33%  Similarity=0.690  Sum_probs=33.1

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHH-hcCCCCceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQ-HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~-h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      |.|++  |++ .-+...|..|... |..+...+.||+  |...+.  .+|..|+..+|+
T Consensus         3 f~CP~--C~~-~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPY--CGK-GFSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             cCCCC--CCC-ccCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhcC
Confidence            67777  777 4445677777654 333333477777  777644  377778777774

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.03  E-value=4e-06  Score=58.79  Aligned_cols=56  Identities=30%  Similarity=0.660  Sum_probs=40.9

Q ss_pred             ccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceec
Q psy11069        297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       297 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C  362 (391)
                      ||.|..  |++.|.+...|..|++..|.   ++.|+.  |++.|.   .|..|++++.+..-...|
T Consensus         1 py~C~~--Cgk~F~s~s~Lk~H~r~~H~---~~~C~~--CgKsF~---~l~~H~~~~~~~~~~~~~   56 (79)
T PHA00732          1 MFKCPI--CGFTTVTLFALKQHARRNHT---LTKCPV--CNKSYR---RLNQHFYSQYDIEHLIYC   56 (79)
T ss_pred             CccCCC--CCCccCCHHHHHHHhhcccC---CCccCC--CCCEeC---ChhhhhcccCCccceEEe
Confidence            578877  99999999999999874455   357887  999887   578888776654323334

>PHA00732 hypothetical protein

Probab=97.96  E-value=7.3e-06  Score=57.50  Aligned_cols=46  Identities=26%  Similarity=0.423  Sum_probs=31.0

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhc
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKS  321 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~  321 (391)
                      ||.|..||+.|.+...|..|++..|.   ++.|+.  |++.|.   .|..|+.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~--CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPV--CNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCC--CCCEeC---Chhhhhcc
Confidence            46777777777777777777653354   356766  777776   36667654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.95  E-value=1.4e-05  Score=51.98  Aligned_cols=50  Identities=26%  Similarity=0.548  Sum_probs=25.1

Q ss_pred             cccccCCcCccccCHHHHHHhhhccCCCC-CccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        298 FKCTHDGCKLLFSSKSALKRHNKSKHLNM-RMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       298 ~~C~~~~C~~~f~~~~~l~~H~~~~H~~~-~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      |.|++  |++ ..+...|..|....|..+ +.+.|++  |...+.  .+|..|+..++
T Consensus         3 f~CP~--C~~-~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPY--CGK-GFSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCC--CCC-ccCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhc
Confidence            45555  555 333445555555555443 3455555  555433  25555555543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.64  E-value=1.6e-05  Score=68.83  Aligned_cols=72  Identities=17%  Similarity=0.246  Sum_probs=37.8

Q ss_pred             CCccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhHhccccccCCCCCccccCcccccCCChhH
Q psy11069        204 PLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCR  283 (391)
Q Consensus       204 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~  283 (391)
                      ++||+|+++||++.+.+...|+.|+.--|...+...=+-++=-..|             ....+||+|++|+|.|.+...
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F-------------~~~~KPYrCevC~KRYKNlNG  413 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF-------------SAKDKPYRCEVCDKRYKNLNG  413 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccc-------------cccCCceeccccchhhccCcc
Confidence            3666666666666666666666666533211111100000000111             123467777777777777777


Q ss_pred             HHHHH
Q psy11069        284 LREHY  288 (391)
Q Consensus       284 l~~H~  288 (391)
                      |+-|.
T Consensus       414 LKYHr  418 (423)
T COG5189         414 LKYHR  418 (423)
T ss_pred             ceecc
Confidence            77774

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.60  E-value=4.2e-05  Score=40.04  Aligned_cols=22  Identities=36%  Similarity=0.854  Sum_probs=14.0

Q ss_pred             eeccCcCcccccccchhHHHHHHh
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKH  383 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~  383 (391)
                      |.|+.  |++.|.++..|.+|++.
T Consensus         1 y~C~~--C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPI--CGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETT--TTEEESSHHHHHHHHHH
T ss_pred             CCCCC--CCCccCCHHHHHHHHhH
Confidence            45665  66666666666666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.60  E-value=3.4e-05  Score=66.85  Aligned_cols=75  Identities=27%  Similarity=0.480  Sum_probs=42.0

Q ss_pred             CCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccc
Q psy11069        295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAK  374 (391)
Q Consensus       295 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~  374 (391)
                      +|||+|++++|.+.++....|+.|+..-|...+...=+-++=-..|            -...| ||+|++  |+|+|...
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F------------~~~~K-PYrCev--C~KRYKNl  411 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF------------SAKDK-PYRCEV--CDKRYKNL  411 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccc------------cccCC-ceeccc--cchhhccC
Confidence            3666666666666666666666666533322222111110011111            12345 599988  99999988


Q ss_pred             hhHHHHHHhh
Q psy11069        375 SSLYAHLKHV  384 (391)
Q Consensus       375 ~~L~~H~~~~  384 (391)
                      ..|+-|+..-
T Consensus       412 NGLKYHr~Hs  421 (423)
T COG5189         412 NGLKYHRKHS  421 (423)
T ss_pred             ccceeccccc
Confidence            8888886543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.54  E-value=6e-05  Score=39.80  Aligned_cols=24  Identities=42%  Similarity=0.837  Sum_probs=13.7

Q ss_pred             eeccCcCcccccccchhHHHHHHhhc
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      |.|++  |++.|.+...|..|++++|
T Consensus         1 ~~C~~--C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPI--CGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SS--TS-EESSHHHHHHHHHHHS
T ss_pred             CCCcC--CCCcCCcHHHHHHHHHhhC
Confidence            45666  6666666666666666654

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.52  E-value=5.1e-05  Score=39.69  Aligned_cols=23  Identities=48%  Similarity=1.123  Sum_probs=14.3

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHHh
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~h  353 (391)
                      |.|+.  |++.|.+...|.+|++.|
T Consensus         1 y~C~~--C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPI--CGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETT--TTEEESSHHHHHHHHHHH
T ss_pred             CCCCC--CCCccCCHHHHHHHHhHC
Confidence            45664  666666666666666653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.51  E-value=5.8e-05  Score=56.32  Aligned_cols=73  Identities=27%  Similarity=0.389  Sum_probs=16.0

Q ss_pred             ccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHH
Q psy11069        270 VCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEH  349 (391)
Q Consensus       270 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H  349 (391)
                      .|..|+..|.+...|..|+...|.-..+       ....+.....+..+++.  .....+.|.+  |++.|.+...|..|
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-------~~~~l~~~~~~~~~~~~--~~~~~~~C~~--C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-------DQKYLVDPNRLLNYLRK--KVKESFRCPY--CNKTFRSREALQEH   69 (100)
T ss_dssp             ---------------------------------------------------------SSEEBSS--SS-EESSHHHHHHH
T ss_pred             Cccccccccccccccccccccccccccc-------ccccccccccccccccc--ccCCCCCCCc--cCCCCcCHHHHHHH
Confidence            3667777777777777776655543221       11122233444444331  1222466776  77777777777777


Q ss_pred             HHHh
Q psy11069        350 MLQH  353 (391)
Q Consensus       350 ~~~h  353 (391)
                      |+.+
T Consensus        70 m~~~   73 (100)
T PF12756_consen   70 MRSK   73 (100)
T ss_dssp             HHHT
T ss_pred             HcCc
Confidence            7654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.49  E-value=5.9e-05  Score=56.27  Aligned_cols=72  Identities=26%  Similarity=0.465  Sum_probs=14.0

Q ss_pred             cccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHH
Q psy11069        300 CTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYA  379 (391)
Q Consensus       300 C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~  379 (391)
                      |..  |+..|.+...|..|+...|.-..+       ....+.....+..+++.-...  .+.|.+  |++.|.+...|..
T Consensus         2 C~~--C~~~f~~~~~l~~H~~~~H~~~~~-------~~~~l~~~~~~~~~~~~~~~~--~~~C~~--C~~~f~s~~~l~~   68 (100)
T PF12756_consen    2 CLF--CDESFSSVDDLLQHMKKKHGFDIP-------DQKYLVDPNRLLNYLRKKVKE--SFRCPY--CNKTFRSREALQE   68 (100)
T ss_dssp             --------------------------------------------------------S--SEEBSS--SS-EESSHHHHHH
T ss_pred             ccc--cccccccccccccccccccccccc-------cccccccccccccccccccCC--CCCCCc--cCCCCcCHHHHHH
Confidence            545  666666666666666555543221       111122333333443332222  266666  6666666666666


Q ss_pred             HHHhh
Q psy11069        380 HLKHV  384 (391)
Q Consensus       380 H~~~~  384 (391)
                      |++.+
T Consensus        69 Hm~~~   73 (100)
T PF12756_consen   69 HMRSK   73 (100)
T ss_dssp             HHHHT
T ss_pred             HHcCc
Confidence            66644

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.33  E-value=0.00016  Score=38.13  Aligned_cols=24  Identities=50%  Similarity=1.110  Sum_probs=14.9

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      |.|++  |++.|.+...|..|+++|+
T Consensus         1 ~~C~~--C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPI--CGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SS--TS-EESSHHHHHHHHHHHS
T ss_pred             CCCcC--CCCcCCcHHHHHHHHHhhC
Confidence            45666  7777777777777776654

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.30  E-value=0.00015  Score=39.56  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      +|+|..  |++.|.+..+|..|++.|++
T Consensus         1 ~~~C~~--C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDE--CGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETT--TTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCc--cCCccCChhHHHHHhHHhcC
Confidence            377877  88888888888888877764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.16  E-value=0.00021  Score=62.78  Aligned_cols=131  Identities=26%  Similarity=0.532  Sum_probs=74.6

Q ss_pred             ccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCC---cccc------chhhHhccccccCCC---CCccccCc
Q psy11069        206 TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG---KSFY------LMASLKSHQRVHVTN---PEDLVCKG  273 (391)
Q Consensus       206 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~---~~f~------~~~~l~~H~~~h~~~---~~~~~C~~  273 (391)
                      .|.|+...|.........|+.|.+..|+   .+.|.+  |-   +.|.      ++..|..|...-..+   ..-=.|..
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~---~~~C~~--C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~F  225 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHG---FVLCSE--CIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIF  225 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcC---cEEhHh--hhcCcccCccceeeeecccccccccCCccccCcCCCchhhh
Confidence            4778877788888888889999888775   466765  52   2333      334455554432111   11124777


Q ss_pred             ccccCCChhHHHHHHHHhcCCCCccccccCCcCcc-------ccCHHHHHHhhhccCCCCCccCCCCCCCC----cccCC
Q psy11069        274 CGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLL-------FSSKSALKRHNKSKHLNMRMFPCPLVTCG----KSFLR  342 (391)
Q Consensus       274 C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~-------f~~~~~l~~H~~~~H~~~~~~~C~~~~C~----~~f~~  342 (391)
                      |...|-+-..|.+|++..|.     .|-+  |++.       |.+...|..|.+..|     |.|.+..|-    ..|..
T Consensus       226 C~~~FYdDDEL~~HcR~~HE-----~ChI--CD~v~p~~~QYFK~Y~~Le~HF~~~h-----y~ct~qtc~~~k~~vf~~  293 (493)
T COG5236         226 CKIYFYDDDELRRHCRLRHE-----ACHI--CDMVGPIRYQYFKSYEDLEAHFRNAH-----YCCTFQTCRVGKCYVFPY  293 (493)
T ss_pred             ccceecChHHHHHHHHhhhh-----hhhh--hhccCccchhhhhCHHHHHHHhhcCc-----eEEEEEEEecCcEEEecc
Confidence            77777777777777765553     3333  4332       555566666655322     455443342    24556


Q ss_pred             hHHHHHHHHHh
Q psy11069        343 SEHLQEHMLQH  353 (391)
Q Consensus       343 ~~~L~~H~~~h  353 (391)
                      ...|..|+..-
T Consensus       294 ~~el~~h~~~~  304 (493)
T COG5236         294 HTELLEHLTRF  304 (493)
T ss_pred             HHHHHHHHHHH
Confidence            66666665443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.10  E-value=0.00079  Score=59.24  Aligned_cols=74  Identities=28%  Similarity=0.683  Sum_probs=34.9

Q ss_pred             ccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCc-------ccCChHHHHHHHHHhcCCCCceeccCcCcc---
Q psy11069        299 KCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGK-------SFLRSEHLQEHMLQHNENKPKFTCPYQDCL---  368 (391)
Q Consensus       299 ~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~-------~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~---  368 (391)
                      .|.+  |...|.+-..|.+|++..|.     .|-+  |++       -|.+..+|.+|.+.-     .|.|.++.|.   
T Consensus       222 ~C~F--C~~~FYdDDEL~~HcR~~HE-----~ChI--CD~v~p~~~QYFK~Y~~Le~HF~~~-----hy~ct~qtc~~~k  287 (493)
T COG5236         222 LCIF--CKIYFYDDDELRRHCRLRHE-----ACHI--CDMVGPIRYQYFKSYEDLEAHFRNA-----HYCCTFQTCRVGK  287 (493)
T ss_pred             hhhh--ccceecChHHHHHHHHhhhh-----hhhh--hhccCccchhhhhCHHHHHHHhhcC-----ceEEEEEEEecCc
Confidence            3544  55555555555555554332     2332  322       344555555554421     2444444443   


Q ss_pred             -cccccchhHHHHHHhhcC
Q psy11069        369 -MSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       369 -~~f~~~~~L~~H~~~~H~  386 (391)
                       ..|.....|..|+.+.|+
T Consensus       288 ~~vf~~~~el~~h~~~~h~  306 (493)
T COG5236         288 CYVFPYHTELLEHLTRFHK  306 (493)
T ss_pred             EEEeccHHHHHHHHHHHhh
Confidence             345555555555555554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.97  E-value=0.00034  Score=38.16  Aligned_cols=23  Identities=43%  Similarity=0.826  Sum_probs=11.9

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHHh
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~h  353 (391)
                      |.|..  |++.|.+...|..|++.|
T Consensus         2 ~~C~~--C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDE--CGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETT--TTEEESSHHHHHHHHCTT
T ss_pred             CCCCc--cCCccCChhHHHHHhHHh
Confidence            44554  555555555555555444

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.86  E-value=0.00073  Score=41.77  Aligned_cols=40  Identities=30%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKP  358 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~  358 (391)
                      .+.+.++..+.|-.|++  |+..+.+..+|.+|+.++|+.+|
T Consensus        13 ~~~k~~~~S~~PatCP~--C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   13 KKPKSKSQSEQPATCPI--CGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             ---CCCCTTS--EE-TT--T--EESSHHHHHHHHHHHTTTS-
T ss_pred             hHHHHhhccCCCCCCCc--chhhccchhhHHHHHHHHhcccC
Confidence            33443444555666665  66666666666666666665553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.74  E-value=0.001  Score=35.03  Aligned_cols=24  Identities=46%  Similarity=0.783  Sum_probs=15.9

Q ss_pred             eeccCcCcccccccchhHHHHHHhhcC
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      |+|+.  |++... +..|.+|++.+|+
T Consensus         1 y~C~~--C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPH--CSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SS--SS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCC--CCCcCC-HHHHHHHHHhhCc
Confidence            56777  777776 7777777777764

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.47  E-value=0.0016  Score=40.30  Aligned_cols=41  Identities=20%  Similarity=0.282  Sum_probs=26.6

Q ss_pred             HHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        346 LQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       346 L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +..+.+.+.....|-.|++  |+..+.+..+|.+|+...|+.+
T Consensus        11 ~~~~~k~~~~S~~PatCP~--C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   11 STKKPKSKSQSEQPATCPI--CGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             -----CCCCTTS--EE-TT--T--EESSHHHHHHHHHHHTTTS
T ss_pred             hhhHHHHhhccCCCCCCCc--chhhccchhhHHHHHHHHhccc
Confidence            3556666655555799999  9999999999999999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.28  E-value=0.0052  Score=32.66  Aligned_cols=18  Identities=50%  Similarity=0.883  Sum_probs=8.9

Q ss_pred             CCcccCChHHHHHHHHHh
Q psy11069        336 CGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h  353 (391)
                      |++.|.+...|..|++.|
T Consensus         6 C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        6 CGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CcchhCCHHHHHHHHHHh
Confidence            555555555555554443

>KOG2231|consensus

Probab=96.18  E-value=0.01  Score=58.22  Aligned_cols=127  Identities=23%  Similarity=0.382  Sum_probs=72.5

Q ss_pred             eeccCCCCCcccc---------------chhhHhccccccCCCCCccccCccc----------ccCCChhHHHHHHHHhc
Q psy11069        238 YMCDYKGCGKSFY---------------LMASLKSHQRVHVTNPEDLVCKGCG----------KQFKVPCRLREHYKAVH  292 (391)
Q Consensus       238 ~~C~~~~C~~~f~---------------~~~~l~~H~~~h~~~~~~~~C~~C~----------~~f~~~~~l~~H~~~~H  292 (391)
                      +.|.+  |+..|.               +...|+.|+...|.   .+.|.+|-          +.| +...|..|++.--
T Consensus       100 ~~C~~--C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~---~~~c~lC~~~~kif~~e~k~Y-t~~el~~h~~~gd  173 (669)
T KOG2231|consen  100 HSCHI--CDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHK---LHLCSLCLQNLKIFINERKLY-TRAELNLHLMFGD  173 (669)
T ss_pred             hhcCc--cccchhhhcccCCCccccchhHHHHHHHHHHHhhh---hhccccccccceeeeeeeehe-hHHHHHHHHhcCC
Confidence            77886  888774               56677777744322   34454442          333 3556666654211


Q ss_pred             CCCC----ccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC----CCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        293 ESTK----NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL----VTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       293 ~~~~----~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~----~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .+++    --.|..  |...|.....|.+|++..|     |.|.+    ..++.-|.+..+|..|.|.+|     |.|..
T Consensus       174 ~d~~s~rGhp~C~~--C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H-----flCE~  241 (669)
T KOG2231|consen  174 PDDESCRGHPLCKF--CHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-----FLCEE  241 (669)
T ss_pred             CccccccCCccchh--hhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC-----ccccc
Confidence            1111    135766  8888888888888887544     45555    013456777788888887664     55552


Q ss_pred             cCcc-cccccchhHHHHHH
Q psy11069        365 QDCL-MSYVAKSSLYAHLK  382 (391)
Q Consensus       365 ~~C~-~~f~~~~~L~~H~~  382 (391)
                      +-|. +.|.....+..|++
T Consensus       242 ~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  242 EFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             cccccceeeehhHHHHHHH
Confidence            2253 34444334455555

>KOG4173|consensus

Probab=96.13  E-value=0.0017  Score=52.94  Aligned_cols=84  Identities=23%  Similarity=0.460  Sum_probs=51.9

Q ss_pred             CeeccCCCCCccccchhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHhc---------CCCCccccccCCcCc
Q psy11069        237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH---------ESTKNFKCTHDGCKL  307 (391)
Q Consensus       237 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H---------~~~~~~~C~~~~C~~  307 (391)
                      .|.|++.+|...|.+...+..|-.+.|++    .|.+|.+.|.+...|..|+...|         .|.--|+|-.++|+.
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~----sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~  154 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHGN----SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE  154 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhcccc----hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence            35555555666666555555555443332    46666666666666666665444         234457777777888


Q ss_pred             cccCHHHHHHhhhccCC
Q psy11069        308 LFSSKSALKRHNKSKHL  324 (391)
Q Consensus       308 ~f~~~~~l~~H~~~~H~  324 (391)
                      .|.+...-..|+...|.
T Consensus       155 KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  155 KFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             hhhhhhhhhhHHHHhcc
Confidence            88777777777765554

>KOG1146|consensus

Probab=96.07  E-value=0.0023  Score=66.26  Aligned_cols=56  Identities=23%  Similarity=0.488  Sum_probs=42.3

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHH--hc----------------------------------------CCCCceecc
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQ--HN----------------------------------------ENKPKFTCP  363 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~--h~----------------------------------------~~~~~~~C~  363 (391)
                      .++|.|..  |...++....|..||..  |-                                        ..+|.+.|.
T Consensus       516 ~~p~~C~~--C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~  593 (1406)
T KOG1146|consen  516 GKPYPCRA--CNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCE  593 (1406)
T ss_pred             CCccccee--eeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchh
Confidence            45688887  88888888888888754  11                                        124579999


Q ss_pred             CcCcccccccchhHHHHHHhhc
Q psy11069        364 YQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       364 ~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      +  |++.-.-..+|..|+..-+
T Consensus       594 v--c~yetniarnlrihmtss~  613 (1406)
T KOG1146|consen  594 V--CSYETNIARNLRIHMTASP  613 (1406)
T ss_pred             h--hcchhhhhhccccccccCC
Confidence            9  9999988899999876544

>KOG4173|consensus

Probab=95.91  E-value=0.0053  Score=50.12  Aligned_cols=95  Identities=19%  Similarity=0.373  Sum_probs=58.6

Q ss_pred             CCceecCCCCCCCcccChHHHHHHHHhcCCCCcccCccCCCCCCccccccCCHHHHHHHHhhcCCCCCcccccccccccc
Q psy11069        108 QQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKR  187 (391)
Q Consensus       108 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~  187 (391)
                      -..|.|++..|...|.....+..|..+-++   -.|..       |.+.|.+...|..|+...|+.-             
T Consensus        77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~-------C~r~~Pt~hLLd~HI~E~HDs~-------------  133 (253)
T KOG4173|consen   77 VPAFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSF-------CKRAFPTGHLLDAHILEWHDSL-------------  133 (253)
T ss_pred             cccccccccchHHHHhhhhhHHHhhhhccc---chhHH-------HHHhCCchhhhhHHHHHHHHHH-------------
Confidence            345778777777777777777766644222   24666       7777777777777765544320             


Q ss_pred             cCCHHHHHHHHHHcCCCCccccccccccccccCchHHHHHHhHhcC
Q psy11069        188 FTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSN  233 (391)
Q Consensus       188 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  233 (391)
                      |        ....-.|...|.|-..||+..|.+...-..|+...|.
T Consensus       134 F--------qa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  134 F--------QALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             H--------HHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            0        0011224456777777788888887777777776654

>smart00355 ZnF_C2H2 zinc finger

Probab=95.90  E-value=0.0052  Score=32.67  Aligned_cols=24  Identities=29%  Similarity=0.657  Sum_probs=21.2

Q ss_pred             eeccCcCcccccccchhHHHHHHhhc
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      |.|+.  |++.|.+...|..|++.|.
T Consensus         1 ~~C~~--C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPE--CGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCC--CcchhCCHHHHHHHHHHhc
Confidence            57988  9999999999999999553

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.77  E-value=0.0071  Score=31.74  Aligned_cols=23  Identities=30%  Similarity=0.756  Sum_probs=13.6

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      |+|+.  |++... ...|.+|++.|+
T Consensus         1 y~C~~--C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPH--CSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SS--SS-EES-HHHHHHHHHHHH
T ss_pred             CCCCC--CCCcCC-HHHHHHHHHhhC
Confidence            45665  776666 666777776654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.75  E-value=0.0046  Score=32.83  Aligned_cols=15  Identities=40%  Similarity=0.864  Sum_probs=6.3

Q ss_pred             CCcccCChHHHHHHH
Q psy11069        336 CGKSFLRSEHLQEHM  350 (391)
Q Consensus       336 C~~~f~~~~~L~~H~  350 (391)
                      |++.|.+...|..|+
T Consensus         6 C~~~f~s~~~~~~H~   20 (25)
T PF12874_consen    6 CNKSFSSENSLRQHL   20 (25)
T ss_dssp             TTEEESSHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHH
Confidence            444444444444443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.62  E-value=0.0082  Score=31.82  Aligned_cols=23  Identities=35%  Similarity=0.678  Sum_probs=21.0

Q ss_pred             eeccCcCcccccccchhHHHHHHhh
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      |.|.+  |++.|.+...|..|++.+
T Consensus         1 ~~C~~--C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDI--CNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETT--TTEEESSHHHHHHHHTTH
T ss_pred             CCCCC--CCCCcCCHHHHHHHHCcC
Confidence            67999  999999999999999864

>KOG2231|consensus

Probab=95.57  E-value=0.022  Score=55.97  Aligned_cols=18  Identities=28%  Similarity=0.414  Sum_probs=8.5

Q ss_pred             CCccccchhhHhcccccc
Q psy11069        245 CGKSFYLMASLKSHQRVH  262 (391)
Q Consensus       245 C~~~f~~~~~l~~H~~~h  262 (391)
                      |...|.....|.+|++.+
T Consensus       188 C~~~fld~~el~rH~~~~  205 (669)
T KOG2231|consen  188 CHERFLDDDELYRHLRFD  205 (669)
T ss_pred             hhhhhccHHHHHHhhccc
Confidence            444444444444444433

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.51  E-value=0.0034  Score=60.30  Aligned_cols=154  Identities=23%  Similarity=0.298  Sum_probs=79.3

Q ss_pred             ceecCCCCCCCcccChHHHHHHHH--hcCCC--CcccCc--cCCCCCCccccccCCHHHHHHHHhhcCCCCCcccccccc
Q psy11069        110 LWSCPIVNCNFTSVNLNTFKIHLL--KHFDK--KPFKCK--LTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKN  183 (391)
Q Consensus       110 ~~~C~~~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~  183 (391)
                      ++.|.  .|...|.....|..|.+  .|.++  +++.|+  .       |++.|.....+..|...|.+. ..+.+.-..
T Consensus       289 ~~~~~--~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  358 (467)
T COG5048         289 PIKSK--QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSL-------CGKLFSRNDALKRHILLHTSI-SPAKEKLLN  358 (467)
T ss_pred             CCCCc--cccCCccccccccccccccccccccCCceeeeccC-------CCccccccccccCCcccccCC-Ccccccccc
Confidence            45555  36666666666666666  56666  666666  4       666666666666666666555 333333223


Q ss_pred             cccccCCHHHHHHHHHHcCCCCccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhHhccccccC
Q psy11069        184 CNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHV  263 (391)
Q Consensus       184 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~  263 (391)
                      +...+.....-..+                          ..............+.+....|...+.....+..|...+.
T Consensus       359 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (467)
T COG5048         359 SSSKFSPLLNNEPP--------------------------QSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHL  412 (467)
T ss_pred             CccccccccCCCCc--------------------------cchhhccCccCCccccccccchhhhhcccccccccccccc
Confidence            33333222111000                          0000000011133444554456666666666666655552


Q ss_pred             C-CCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        264 T-NPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       264 ~-~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      . ....+.+..|.+.|.....+..|++ .|....++.|
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  449 (467)
T COG5048         413 SFRPYNCKNPPCSKSFNRHYNLIPHKK-IHTNHAPLLC  449 (467)
T ss_pred             ccCCcCCCCCcchhhccCccccccccc-ccccCCceee
Confidence            2 1124556677777777777777765 5655555555

>KOG1146|consensus

Probab=95.43  E-value=0.0033  Score=65.16  Aligned_cols=132  Identities=19%  Similarity=0.259  Sum_probs=88.9

Q ss_pred             CCccccchhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcC------------------------CCCcccc
Q psy11069        245 CGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHE------------------------STKNFKC  300 (391)
Q Consensus       245 C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~------------------------~~~~~~C  300 (391)
                      |+..+.....+..|+..-+...+.|+|+.|+..|.....|..|+|.+|.                        +.++|.|
T Consensus       442 ~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C  521 (1406)
T KOG1146|consen  442 AEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPC  521 (1406)
T ss_pred             hhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccc
Confidence            5555666666666665544555677777777777777777777776552                        2357888


Q ss_pred             ccCCcCccccCHHHHHHhhhcc-CC-----------------------------------------CCCccCCCCCCCCc
Q psy11069        301 THDGCKLLFSSKSALKRHNKSK-HL-----------------------------------------NMRMFPCPLVTCGK  338 (391)
Q Consensus       301 ~~~~C~~~f~~~~~l~~H~~~~-H~-----------------------------------------~~~~~~C~~~~C~~  338 (391)
                      ..  |...+....+|.+|+.+- |.                                         ....+.|.+  |++
T Consensus       522 ~~--C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~v--c~y  597 (1406)
T KOG1146|consen  522 RA--CNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEV--CSY  597 (1406)
T ss_pred             ee--eeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhh--hcc
Confidence            76  888888888888887531 10                                         012488998  999


Q ss_pred             ccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHH
Q psy11069        339 SFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK  382 (391)
Q Consensus       339 ~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~  382 (391)
                      .-+-...|..||..-....++..|-.  |+..+.....+..+.+
T Consensus       598 etniarnlrihmtss~~s~~p~~~Lq--~~it~~l~~~~~~~~~  639 (1406)
T KOG1146|consen  598 ETNIARNLRIHMTASPSSSPPSLVLQ--QNITSSLASLLGGQGR  639 (1406)
T ss_pred             hhhhhhccccccccCCCCCChHHHhh--hcchhhccccccCcCC
Confidence            99999999999976444444466666  7666665555554433

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.94  E-value=0.0088  Score=57.42  Aligned_cols=163  Identities=24%  Similarity=0.371  Sum_probs=108.1

Q ss_pred             cccccccccCCHHHHHHHHH--HcCCC--CccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhH
Q psy11069        180 DQKNCNKRFTTLSNLKMHMV--RHGKP--LTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASL  255 (391)
Q Consensus       180 ~c~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l  255 (391)
                      .|..|...|.....|..|.+  .|.++  +++.|....|++.|.....+..|...|.+ ..++.+....+...+.....-
T Consensus       291 ~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  369 (467)
T COG5048         291 KSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS-ISPAKEKLLNSSSKFSPLLNN  369 (467)
T ss_pred             CCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccC-CCccccccccCccccccccCC
Confidence            33378888888888888888  68888  78888822388888888888888888876 555666554565555544332


Q ss_pred             hcccccc----CCCCCccccC--cccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCcc
Q psy11069        256 KSHQRVH----VTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMF  329 (391)
Q Consensus       256 ~~H~~~h----~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  329 (391)
                      ..+....    ......+.+.  .|-..+.....+..|.. .|....++.|....|...|.....+..|++ .|....++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  447 (467)
T COG5048         370 EPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHII-THLSFRPYNCKNPPCSKSFNRHYNLIPHKK-IHTNHAPL  447 (467)
T ss_pred             CCccchhhccCccCCccccccccchhhhhccccccccccc-cccccCCcCCCCCcchhhccCccccccccc-ccccCCce
Confidence            1111111    1122334443  46677778888888865 777766555555569999999999999999 58777777


Q ss_pred             CCCCCCCCcccCChHHHHH
Q psy11069        330 PCPLVTCGKSFLRSEHLQE  348 (391)
Q Consensus       330 ~C~~~~C~~~f~~~~~L~~  348 (391)
                      .|.   +-+.|.....+..
T Consensus       448 ~~~---~~~~~~~~~~~~~  463 (467)
T COG5048         448 LCS---ILKSFRRDLDLSN  463 (467)
T ss_pred             eec---cccccchhhhhhc
Confidence            775   4445554444443

>KOG2482|consensus

Probab=94.78  E-value=0.085  Score=46.86  Aligned_cols=77  Identities=27%  Similarity=0.395  Sum_probs=42.6

Q ss_pred             cccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHH
Q psy11069        269 LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQE  348 (391)
Q Consensus       269 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~  348 (391)
                      .+|-.|.....+...|..||+.+|.-.-. +=. ..=+..|..+-.+..-++..   ...-.|..  |.-.|.....|..
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~-Ki~-sd~~Ln~YqrvrviNyiRkq---~~~~~c~~--cd~~F~~e~~l~~  352 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLL-KIQ-SDYSLNFYQRVRVINYIRKQ---KKKSRCAE--CDLSFWKEPGLLI  352 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHH-hhc-cccccchhhhhhHHHHHHHH---hhcccccc--ccccccCcchhhh
Confidence            57888888888888888888877742100 000 00122233333333332210   11234554  7778888888888


Q ss_pred             HHHH
Q psy11069        349 HMLQ  352 (391)
Q Consensus       349 H~~~  352 (391)
                      ||..
T Consensus       353 hm~e  356 (423)
T KOG2482|consen  353 HMVE  356 (423)
T ss_pred             hccc
Confidence            8864

>PRK04860 hypothetical protein; Provisional

Probab=94.43  E-value=0.027  Score=45.53  Aligned_cols=38  Identities=24%  Similarity=0.535  Sum_probs=30.6

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCH
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSK  312 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~  312 (391)
                      +|.|. |+.   ....+++|.+ +|+++++|.|..  |+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~r-i~~g~~~YrC~~--C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNR-VVRGEAVYRCRR--CGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHH-HhcCCccEECCC--CCceeEEe
Confidence            68897 887   6677888877 888888999977  88887654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.01  E-value=0.015  Score=31.54  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=12.7

Q ss_pred             eeccCcCcccccccchhHHHHHHh
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKH  383 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~  383 (391)
                      |.|..  |++.|.+...|..|++.
T Consensus         2 ~~C~~--C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDA--CDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred             CCccc--CCCCcCCHHHHHHHHcc
Confidence            45555  66666666666655543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=93.84  E-value=0.038  Score=44.67  Aligned_cols=40  Identities=18%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccch
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKS  375 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~  375 (391)
                      -+|.|.   |+.   ....+.+|.++|++++ +|.|..  |+..|....
T Consensus       118 ~~Y~C~---C~~---~~~~~rrH~ri~~g~~-~YrC~~--C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK---CQE---HQLTVRRHNRVVRGEA-VYRCRR--CGETLVFKG  157 (160)
T ss_pred             EEEEcC---CCC---eeCHHHHHHHHhcCCc-cEECCC--CCceeEEec
Confidence            468886   877   6777889999999888 499988  988876543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.67  E-value=0.05  Score=29.42  Aligned_cols=21  Identities=48%  Similarity=0.865  Sum_probs=11.6

Q ss_pred             cccccCCcCccccCHHHHHHhhh
Q psy11069        298 FKCTHDGCKLLFSSKSALKRHNK  320 (391)
Q Consensus       298 ~~C~~~~C~~~f~~~~~l~~H~~  320 (391)
                      |.|..  |++.|.+...|..|++
T Consensus         2 ~~C~~--C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDA--CDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTT--TTBBBSSHHHHHCCTT
T ss_pred             CCccc--CCCCcCCHHHHHHHHc
Confidence            44544  5555555555555554

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2482|consensus

Probab=92.44  E-value=0.12  Score=45.85  Aligned_cols=156  Identities=22%  Similarity=0.296  Sum_probs=90.6

Q ss_pred             chHHHHHHhHhcCCCCCeeccCCCCCcccc-chhhHhcccc-ccCCC--------------------CCccccCcccccC
Q psy11069        221 MKQYSTHLKEHSNVSAPYMCDYKGCGKSFY-LMASLKSHQR-VHVTN--------------------PEDLVCKGCGKQF  278 (391)
Q Consensus       221 ~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~-~~~~l~~H~~-~h~~~--------------------~~~~~C~~C~~~f  278 (391)
                      +..|.++++.-.+......|-+  |...+. .++....|+- .|.-.                    -..+.|-.|.+.|
T Consensus       128 ~eaLeqqQ~Eredt~fslqClF--Cn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekif  205 (423)
T KOG2482|consen  128 KEALEQQQKEREDTIFSLQCLF--CNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIF  205 (423)
T ss_pred             HHHHHHHHHHhcCCeeeeEEEE--ecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeecccc
Confidence            3455666666555456678988  987655 4556666653 33211                    1237899999999


Q ss_pred             CChhHHHHHHHHh-cCCCCc--------cccccCCcCcccc-CHHHHH-----HhhhccCC---------CCCc--cCCC
Q psy11069        279 KVPCRLREHYKAV-HESTKN--------FKCTHDGCKLLFS-SKSALK-----RHNKSKHL---------NMRM--FPCP  332 (391)
Q Consensus       279 ~~~~~l~~H~~~~-H~~~~~--------~~C~~~~C~~~f~-~~~~l~-----~H~~~~H~---------~~~~--~~C~  332 (391)
                      +.+..|+.||+.. |....|        |.=.+..=|++.. ....+.     .+..  +.         +..+  ..|-
T Consensus       206 rdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E--~D~~wsDw~ed~a~a~~v~CL  283 (423)
T KOG2482|consen  206 RDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINE--TDDTWSDWNEDDAEALSVVCL  283 (423)
T ss_pred             CCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccc--cccchhhhhcCCCCccceEEE
Confidence            9999999998742 322222        1111100111110 001110     1100  10         1112  5788


Q ss_pred             CCCCCcccCChHHHHHHHHHhcCC--------------------------CCceeccCcCcccccccchhHHHHHHhh
Q psy11069        333 LVTCGKSFLRSEHLQEHMLQHNEN--------------------------KPKFTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       333 ~~~C~~~f~~~~~L~~H~~~h~~~--------------------------~~~~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      +  |.....+...|..||.+.|.-                          +..-.|-.  |...|.....|..||..+
T Consensus       284 f--C~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~--cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  284 F--CTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAE--CDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             e--eccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccc--ccccccCcchhhhhcccc
Confidence            8  999888899999999875420                          00234655  999999999999998643

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=91.48  E-value=0.16  Score=26.83  Aligned_cols=20  Identities=30%  Similarity=0.599  Sum_probs=11.3

Q ss_pred             eeccCcCcccccccchhHHHHHH
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLK  382 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~  382 (391)
                      ..|+.  ||+.| ....|.+|++
T Consensus         3 ~~C~~--CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPI--CGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCC--CCCEE-CHHHHHHHHH
Confidence            44666  66666 3455666654

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.50  E-value=0.3  Score=25.83  Aligned_cols=19  Identities=42%  Similarity=1.230  Sum_probs=11.3

Q ss_pred             CCCCCCCCcccCChHHHHHHHH
Q psy11069        330 PCPLVTCGKSFLRSEHLQEHML  351 (391)
Q Consensus       330 ~C~~~~C~~~f~~~~~L~~H~~  351 (391)
                      .|++  ||+.| ....|.+|+.
T Consensus         4 ~C~~--CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPI--CGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCC--CCCEE-CHHHHHHHHH
Confidence            4665  66666 5555666654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=90.33  E-value=0.2  Score=28.81  Aligned_cols=22  Identities=36%  Similarity=0.717  Sum_probs=14.2

Q ss_pred             eeccCcCcccccccchhHHHHHHh
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKH  383 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~  383 (391)
                      |.|.+  |++.|.+...+..|++.
T Consensus         4 ~~C~~--C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        4 FYCKL--CNVTFTDEISVEAHLKG   25 (35)
T ss_pred             eEccc--cCCccCCHHHHHHHHCh
Confidence            66666  66666666666666543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG4377|consensus

Probab=89.99  E-value=0.33  Score=44.42  Aligned_cols=128  Identities=20%  Similarity=0.315  Sum_probs=72.7

Q ss_pred             ccccccccccccccCchHHHHHHhHhcCCC-----------CCeeccCCCCCccccchhhHhccccccCC----C--CCc
Q psy11069        206 TLCCEELGCGRKFQTMKQYSTHLKEHSNVS-----------APYMCDYKGCGKSFYLMASLKSHQRVHVT----N--PED  268 (391)
Q Consensus       206 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~-----------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~--~~~  268 (391)
                      -|.|-...|...+-.+.++.+|.+.|...+           ..|.|-...|.+   +-++...|-..|..    +  ..-
T Consensus       271 hyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrth  347 (480)
T KOG4377|consen  271 HYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTH  347 (480)
T ss_pred             hhcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecce
Confidence            466666668887777888888888775422           236787777887   33445555555521    1  123


Q ss_pred             cccCcccccCCChhHHHHHHHHhcCCC---------Cc---cccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCC
Q psy11069        269 LVCKGCGKQFKVPCRLREHYKAVHEST---------KN---FKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTC  336 (391)
Q Consensus       269 ~~C~~C~~~f~~~~~l~~H~~~~H~~~---------~~---~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C  336 (391)
                      |-|..||-++..+  ...|.. .|-..         +.   -.|.+++|.+.-.               -..|.|.+++|
T Consensus       348 fhC~r~gCTdtfK--~~khk~-yh~kdda~~~dGfkkf~k~e~cay~gCkys~~---------------cnhfhc~r~Gc  409 (480)
T KOG4377|consen  348 FHCQRIGCTDTFK--DSKHKP-YHYKDDAGEIDGFKKFFKDENCAYTGCKYSGI---------------CNHFHCDRLGC  409 (480)
T ss_pred             eEEeccCCccccc--cccccc-cccCcchhhhhhhhhhhccccCCccCcccccc---------------eeeeeecccCC
Confidence            6677777444433  333422 33211         11   1355555553311               11256777778


Q ss_pred             CcccCChHHHHHHHHHhc
Q psy11069        337 GKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       337 ~~~f~~~~~L~~H~~~h~  354 (391)
                      +..|.+.+.+..|.|.|.
T Consensus       410 ~~tl~s~sqm~shkrkhe  427 (480)
T KOG4377|consen  410 EATLYSVSQMASHKRKHE  427 (480)
T ss_pred             ceEEEehhhhhhhhhhhh
Confidence            888888888888777764

>KOG4124|consensus

Probab=89.64  E-value=0.098  Score=46.59  Aligned_cols=56  Identities=5%  Similarity=-0.037  Sum_probs=39.7

Q ss_pred             CCCccccccccccccccCchHHHHHHh-----HhcCCCCCeeccCCCCCccccchhhHhcccccc
Q psy11069        203 KPLTLCCEELGCGRKFQTMKQYSTHLK-----EHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH  262 (391)
Q Consensus       203 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-----~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h  262 (391)
                      .|.++.|..++|.+..........|..     ... ..++|.|+   |++...++..|+.|-..-
T Consensus       175 EE~~~S~~vp~~~~~~~~~Ns~~~~S~~~~~T~~t-~~~p~k~~---~~~~~~T~~~l~~HS~N~  235 (442)
T KOG4124|consen  175 EEYRVSVVVPAAAAAAAAANSSDMSSDEASSTAET-TGTPKKMP---ESLVMDTSSPLSDHSMNI  235 (442)
T ss_pred             ccccccccCchhhhhhhcccccccccccccccccc-ccCCccCc---ccccccccchhhhccccC
Confidence            567888998888887665544444332     222 35789998   999999999998886543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=89.61  E-value=0.27  Score=28.28  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=17.8

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHH
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQ  352 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~  352 (391)
                      +|.|.+  |++.|.+...+..|++.
T Consensus         3 ~~~C~~--C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKL--CNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccc--cCCccCCHHHHHHHHCh
Confidence            477887  88888888888888753

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=89.19  E-value=0.65  Score=35.02  Aligned_cols=26  Identities=23%  Similarity=0.533  Sum_probs=23.6

Q ss_pred             ceec----cCcCcccccccchhHHHHHHhhcC
Q psy11069        359 KFTC----PYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       359 ~~~C----~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      -|.|    +.  |++.+.+...+.+|++.+||
T Consensus        80 G~~C~~~~~~--C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPH--CGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCC--CCcEeccHHHHHHHHHHhcC
Confidence            4889    88  99999999999999999986

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2893|consensus

Probab=88.84  E-value=0.12  Score=43.37  Aligned_cols=43  Identities=26%  Similarity=0.508  Sum_probs=22.2

Q ss_pred             CCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhc
Q psy11069        336 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      |++.|.+..-|.+|++..     .|+|-+  |.+...+-..|..|.-.+|
T Consensus        16 cnrefddekiliqhqkak-----hfkchi--chkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   16 CNREFDDEKILIQHQKAK-----HFKCHI--CHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             cccccchhhhhhhhhhhc-----cceeee--ehhhhccCCCceeehhhhh
Confidence            555555555555554432     255555  5555555555555544444

>KOG2785|consensus

Probab=88.50  E-value=1.3  Score=40.34  Aligned_cols=140  Identities=17%  Similarity=0.334  Sum_probs=91.8

Q ss_pred             CeeccCCCCCccccchhhHhccccc--cC----------------------------------CCCCccccCcccccCCC
Q psy11069        237 PYMCDYKGCGKSFYLMASLKSHQRV--HV----------------------------------TNPEDLVCKGCGKQFKV  280 (391)
Q Consensus       237 ~~~C~~~~C~~~f~~~~~l~~H~~~--h~----------------------------------~~~~~~~C~~C~~~f~~  280 (391)
                      .|.|..  |...|.+....+.|.++  |.                                  ..+.++.|..|.+.|.+
T Consensus         3 ~ftC~t--C~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s   80 (390)
T KOG2785|consen    3 GFTCNT--CNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFAS   80 (390)
T ss_pred             cceeec--eeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccC
Confidence            488986  99999999888888765  31                                  11235889999999999


Q ss_pred             hhHHHHHHHHhcCCC----------------Cccc-------------cccCCcCccccCHHHHHHhhhc----------
Q psy11069        281 PCRLREHYKAVHEST----------------KNFK-------------CTHDGCKLLFSSKSALKRHNKS----------  321 (391)
Q Consensus       281 ~~~l~~H~~~~H~~~----------------~~~~-------------C~~~~C~~~f~~~~~l~~H~~~----------  321 (391)
                      ......|+...-..+                ....             +..  +...+........+...          
T Consensus        81 ~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~--~~E~~~~~d~~~e~~~dd~~Edi~~d~  158 (390)
T KOG2785|consen   81 PKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELK--WYEVDSDEDSSEEEEEDDEEEDIEEDG  158 (390)
T ss_pred             hhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccc--hhhcccccccchhhccCcchhhhhhcc
Confidence            999999976321100                0111             111  22222221222222110          


Q ss_pred             -cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCC----------------------CceeccCcCcc---cccccch
Q psy11069        322 -KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK----------------------PKFTCPYQDCL---MSYVAKS  375 (391)
Q Consensus       322 -~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~----------------------~~~~C~~~~C~---~~f~~~~  375 (391)
                       .-...-|-.|-+  |++.|.+...-..||..+|+--                      .-|.|-.  |+   +.|.+..
T Consensus       159 ~~e~e~~Pt~CLf--C~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~--CN~~~~~f~sle  234 (390)
T KOG2785|consen  159 DDEDELIPTDCLF--CDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF--CNELGRPFSSLE  234 (390)
T ss_pred             chhcccCCcceee--cCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE--eccccCcccccH
Confidence             001123466887  9999999999999999988621                      1488998  99   9999999


Q ss_pred             hHHHHHHhh
Q psy11069        376 SLYAHLKHV  384 (391)
Q Consensus       376 ~L~~H~~~~  384 (391)
                      +.+.||...
T Consensus       235 avr~HM~~K  243 (390)
T KOG2785|consen  235 AVRAHMRDK  243 (390)
T ss_pred             HHHHHHhhc
Confidence            999998754

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=86.47  E-value=0.35  Score=30.61  Aligned_cols=28  Identities=29%  Similarity=0.468  Sum_probs=18.7

Q ss_pred             CCCccccCcccccCCChhHHHHHHHHhc
Q psy11069        265 NPEDLVCKGCGKQFKVPCRLREHYKAVH  292 (391)
Q Consensus       265 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H  292 (391)
                      ++.-+.|+-||..|.....+.+|....|
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            4455677777777777777777765444

>KOG2785|consensus

Probab=85.67  E-value=1.7  Score=39.73  Aligned_cols=139  Identities=19%  Similarity=0.273  Sum_probs=93.3

Q ss_pred             ccccccccccccccCchHHHHHHhHhc------------------------------------CCCCCeeccCCCCCccc
Q psy11069        206 TLCCEELGCGRKFQTMKQYSTHLKEHS------------------------------------NVSAPYMCDYKGCGKSF  249 (391)
Q Consensus       206 ~~~C~~~~C~~~f~~~~~l~~H~~~h~------------------------------------~~~~~~~C~~~~C~~~f  249 (391)
                      .|.|..  |...|.+...-+.|.++..                                    ....++.|.+  |.+.|
T Consensus         3 ~ftC~t--C~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~--c~k~~   78 (390)
T KOG2785|consen    3 GFTCNT--CNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEA--CNKSF   78 (390)
T ss_pred             cceeec--eeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHH--hhccc
Confidence            478999  9999999999999987521                                    0234689997  99999


Q ss_pred             cchhhHhcccccc--CCC--------------CCccc-------------cCcccccCCChhHHHHHHHH-----h----
Q psy11069        250 YLMASLKSHQRVH--VTN--------------PEDLV-------------CKGCGKQFKVPCRLREHYKA-----V----  291 (391)
Q Consensus       250 ~~~~~l~~H~~~h--~~~--------------~~~~~-------------C~~C~~~f~~~~~l~~H~~~-----~----  291 (391)
                      .+......|+..-  ...              ...+.             +..+...+........+...     +    
T Consensus        79 ~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~  158 (390)
T KOG2785|consen   79 ASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDG  158 (390)
T ss_pred             cChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhcc
Confidence            9998888876532  100              00122             33333333332222222110     0    


Q ss_pred             --cCCCCccccccCCcCccccCHHHHHHhhhccCCC----------------------CCccCCCCCCCC---cccCChH
Q psy11069        292 --HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLN----------------------MRMFPCPLVTCG---KSFLRSE  344 (391)
Q Consensus       292 --H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~----------------------~~~~~C~~~~C~---~~f~~~~  344 (391)
                        -...-|-.|-.  |+..|.+...-..||...|+-                      ...|.|-+  |+   +.|.+..
T Consensus       159 ~~e~e~~Pt~CLf--C~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~--CN~~~~~f~sle  234 (390)
T KOG2785|consen  159 DDEDELIPTDCLF--CDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF--CNELGRPFSSLE  234 (390)
T ss_pred             chhcccCCcceee--cCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE--eccccCcccccH
Confidence              01123567888  999999999999999976652                      23488988  99   9999999


Q ss_pred             HHHHHHHH
Q psy11069        345 HLQEHMLQ  352 (391)
Q Consensus       345 ~L~~H~~~  352 (391)
                      +.+.||+.
T Consensus       235 avr~HM~~  242 (390)
T KOG2785|consen  235 AVRAHMRD  242 (390)
T ss_pred             HHHHHHhh
Confidence            99999975

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=85.23  E-value=1.3  Score=33.32  Aligned_cols=85  Identities=14%  Similarity=0.221  Sum_probs=48.2

Q ss_pred             CCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHH---hhhccCC---------CCCccCC--
Q psy11069        266 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKR---HNKSKHL---------NMRMFPC--  331 (391)
Q Consensus       266 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~---H~~~~H~---------~~~~~~C--  331 (391)
                      -+...|..|+..... +.+..|++..|...+...-..  =...+.....|..   .+..-..         ....|.|  
T Consensus         9 ~~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~--i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~   85 (109)
T PF12013_consen    9 YRVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQR--IVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQC   85 (109)
T ss_pred             CCEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHH--HHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeec
Confidence            356789999988766 899999986664332111100  0000000000000   0000000         0134889  


Q ss_pred             --CCCCCCcccCChHHHHHHHHHhcC
Q psy11069        332 --PLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       332 --~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                        ..  |++.+.+...+.+|++.+||
T Consensus        86 ~~~~--C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   86 DPPH--CGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCC--CCcEeccHHHHHHHHHHhcC
Confidence              75  99999999999999998875

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2893|consensus

Probab=84.91  E-value=0.24  Score=41.75  Aligned_cols=42  Identities=33%  Similarity=0.691  Sum_probs=29.2

Q ss_pred             cccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHH
Q psy11069        300 CTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM  350 (391)
Q Consensus       300 C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~  350 (391)
                      |.+  |.+.|....-|.+|.+..|     |+|.+  |.+..-+...|..|-
T Consensus        13 cwy--cnrefddekiliqhqkakh-----fkchi--chkkl~sgpglsihc   54 (341)
T KOG2893|consen   13 CWY--CNREFDDEKILIQHQKAKH-----FKCHI--CHKKLFSGPGLSIHC   54 (341)
T ss_pred             eee--cccccchhhhhhhhhhhcc-----ceeee--ehhhhccCCCceeeh
Confidence            666  7777777777777766533     77777  777766666666663

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=83.27  E-value=0.59  Score=29.62  Aligned_cols=30  Identities=23%  Similarity=0.503  Sum_probs=17.4

Q ss_pred             CCCCccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        324 LNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       324 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      .++--+.|+-  |+..|....++.+|+..-|+
T Consensus        13 DGE~~lrCPR--C~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPR--CGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCc--hhHHHHHhHHHHHHhhHHhh
Confidence            3444566664  66666666666666654444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	391
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		5e-16
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		1e-12
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		5e-12
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-13
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		2e-11
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		6e-05
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		5e-09
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		2e-08
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-06
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		4e-07
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		5e-07
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		7e-07
2dlk_A	79	Solution Structure Of The First And The Second Zf-C		1e-06
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		1e-06
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		4e-05
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		2e-04
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		2e-06
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		6e-06
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		4e-04
2j7j_A	85	Invariance Of The Zinc Finger Module: A Comparison		5e-04
1un6_B	87	The Crystal Structure Of A Zinc Finger - Rna Comple		5e-04

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 111 WSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 170
           + C   +C          + HL KH  +KPF CK        C  GF S H L RH  +H
Sbjct: 13  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK-----EEGCEKGFTSLHHLTRHSLTH 67
Query: 171 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVR--HGKPLTLCCEELGCGRKFQTMKQYSTHL 228
             +K  + CD   C+ RFTT +N+K H  R  + K     C    CG+ F+   Q   H 
Sbjct: 68  TGEKN-FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 229 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP--EDLVCKGCGKQFKV 280
             H+    PY C ++GC K F L + LK H++VH   P  +D  C   GK + +
Sbjct: 127 FSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL 179

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 162 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 221
           KL  H+  H  +K  +PC ++ C K FT+L +L  H + H       C+  GC  +F T 
Sbjct: 29  KLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK 87
Query: 222 KQYSTHLKEHSNVS-APYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFK 279
                H     N+    Y+C ++ CGK+F     LK HQ  H    P +   +GC K+F 
Sbjct: 88  ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS 147
Query: 280 VPCRLREHYKA 290
           +P RL+ H K 
Sbjct: 148 LPSRLKRHEKV 158

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 234 VSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAV 291
           V   Y+C +  CG ++     L++H   H T  +   CK  GC K F     L  H    
Sbjct: 9   VYKRYICSFADCGAAYNKNWKLQAHLCKH-TGEKPFPCKEEGCEKGFTSLHHLTRH-SLT 66
Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRH-NKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM 350
           H   KNF C  DGC L F++K+ +K+H N+  ++ + ++ C    CGK+F +   L+ H 
Sbjct: 67  HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 386
             H +  P + CP++ C   +   S L  H K VH+
Sbjct: 127 FSHTQQLP-YECPHEGCDKRFSLPSRLKRHEK-VHA 160

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 17/204 (8%)
Query: 188 FTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGK 247
           F + S++    +  G+    C E   CG+ F      + H + H+    PY C    CGK
Sbjct: 4   FGSSSSVAQAALEPGEKPYACPE---CGKSFSRSDHLAEHQRTHTG-EKPYKCPE--CGK 57
Query: 248 SFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKL 307
           SF     L  HQR H T  +   C  CGK F     LR H +  H   K + C    C  
Sbjct: 58  SFSDKKDLTRHQRTH-TGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPE--CGK 113
Query: 308 LFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 367
            FS  + L+ H ++ H   + + CP   CGKSF R ++L  H   H   KP + CP  +C
Sbjct: 114 SFSQLAHLRAHQRT-HTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKP-YKCP--EC 167
Query: 368 LMSYVAKSSLYAHLKHVHSTNKIT 391
             S+  + +L  H +  H+  K +
Sbjct: 168 GKSFSRRDALNVHQR-THTGKKTS 190

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 240 CDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFK 299
           C +KGC K F   ++++ H  +H   P   VC  CGK F    +L+ H + VH   K F+
Sbjct: 8   CPHKGCTKMFRDNSAMRKH--LHTHGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQ 64
Query: 300 CTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK 357
           CT +GC   FS    L+ H +  H   R + CP   C K F +S +L+ H+L H + K
Sbjct: 65  CTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE 355
           +   C H GC  +F   SA+++H  +     R+  C    CGK+F+ S  L+ H L H  
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKHLHTH--GPRVHVC--AECGKAFVESSKLKRHQLVHTG 59
Query: 356 NKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK 389
            KP F C ++ C   +    +L  H++ +H+ ++
Sbjct: 60  EKP-FQCTFEGCGKRFSLDFNLRTHVR-IHTGDR 91

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 34/144 (23%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
           P+MC Y GC K ++ ++ L+ H R H                                 K
Sbjct: 6   PFMCAYPGCNKRYFKLSHLQMHSRKHT------------------------------GEK 35
Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN 356
            ++C    C+  FS    LKRH + +H  ++ F C   TC + F RS+HL+ H   H   
Sbjct: 36  PYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGE 92
Query: 357 KPKFTCPYQDCLMSYVAKSSLYAH 380
           KP F+C +  C   +     L  H
Sbjct: 93  KP-FSCRWPSCQKKFARSDELVRH 115

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 37/178 (20%)
Query: 179 CDQKNCNKRFTTLSNLKMHMVR---HGKPLTLCCEELGCGRKFQTMK-QY--STHLKEHS 232
           C    C++ F +   L  H+     HG+     C   GC R+ +  K QY    H++ H+
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 233 NVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 292
               P+ C ++GC KS+  + +LK+H R H                              
Sbjct: 64  G-EKPHKCTFEGCRKSYSRLENLKTHLRSHT----------------------------- 93
Query: 293 ESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM 350
              K + C H+GC   FS+ S   +H    H N + + C L  C K +     L++H+
Sbjct: 94  -GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Query: 240 CDYKGCGKSFYLMASLKSH---QRVHVTNPEDLVC--KGCGKQ---FKVPCRLREHYKAV 291
           C + GC + F     L  H   + +H    E  VC   GC ++   FK    L  H +  
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHMRR- 61
Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML 351
           H   K  KCT +GC+  +S    LK H +S H   + + C    C K+F  +    +H  
Sbjct: 62  HTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 352 QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 386
           + + N+  + C    C   Y   SSL  H+K VH 
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 33/122 (27%)
Query: 232 SNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAV 291
            + +A + CDY GCGK++   + LK+H R H                             
Sbjct: 1   GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHT---------------------------- 32
Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML 351
               K + C  DGC   F+    L RH + KH   R F C    C ++F RS+HL  HM 
Sbjct: 33  --GEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQ--KCDRAFSRSDHLALHMK 87
Query: 352 QH 353
           +H
Sbjct: 88  RH 89

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 33/119 (27%)
Query: 235 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES 294
           +A + CDY GCGK++   + LK+H R H                                
Sbjct: 3   TATHTCDYAGCGKTYTKSSHLKAHLRTHT------------------------------G 32
Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
            K + C  DGC   F+    L RH + KH   R F C    C ++F RS+HL  HM +H
Sbjct: 33  EKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQ--KCDRAFSRSDHLALHMKRH 88

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
           H   + FPCP   CGK F RSE+L+ H   H   KP F C ++ C   +   S    H+ 
Sbjct: 85  HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHM- 142
Query: 383 HVHSTNK 389
           HVH+++K
Sbjct: 143 HVHTSDK 149

>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2 Domains Of Zinc Finger Protein 692 Length = 79

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 294 STKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
            +    C   GC  +FS++  L  H K +H++ + F CP   CGKSF   +HL+EHM  H
Sbjct: 4   GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 354 NENK 357
           ++ +
Sbjct: 64  SDTR 67

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 113 CPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 172
           C   +C          + HL KH  +KPF CK        C  GF S H L RH  +H  
Sbjct: 6   CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCK-----EEGCEKGFTSLHHLTRHSLTHTG 60
Query: 173 DKKCYPCDQKNCNKRFTTLSNLKMHMVR 200
           +K  + CD   C+ RFTT +N+K H  R
Sbjct: 61  EKN-FTCDSDGCDLRFTTKANMKKHFNR 87

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 238 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHEST 295
           Y+C +  CG ++     L++H   H T  +   CK  GC K F     L  H    H   
Sbjct: 4   YICSFADCGAAYNKNWKLQAHLSKH-TGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGE 61
Query: 296 KNFKCTHDGCKLLFSSKSALKRH 318
           KNF C  DGC L F++K+ +K+H
Sbjct: 62  KNFTCDSDGCDLRFTTKANMKKH 84

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE 355
           K + C+   C   ++    L+ H  SKH   + FPC    C K F    HL  H L H  
Sbjct: 2   KRYICSFADCGAAYNKNWKLQAH-LSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 60
Query: 356 NKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 386
            K  FTC    C + +  K+++  H    H+
Sbjct: 61  EK-NFTCDSDGCDLRFTTKANMKKHFNRFHN 90

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 33/117 (28%)
Query: 238 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKN 297
           + CDY GC K +   + LK+H R H                                 K 
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHT------------------------------GEKP 45
Query: 298 FKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN 354
           +KCT +GC   F+    L RH + KH   + F C +  C +SF RS+HL  HM +H 
Sbjct: 46  YKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGV--CNRSFSRSDHLALHMKRHQ 99

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 271 CKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFP 330
           C  CGK F     L++H +  H   K +KC    C   FS  S L++H ++ H   + + 
Sbjct: 7   CPECGKSFSQSSNLQKHQR-THTGEKPYKCPE--CGKSFSQSSDLQKHQRT-HTGEKPYK 62
Query: 331 CPLVTCGKSFLRSEHLQEHMLQHNENK 357
           CP   CGKSF RS+HL  H   H   K
Sbjct: 63  CP--ECGKSFSRSDHLSRHQRTHQNKK 87

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 214 CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG 273
           CG+ F+     STHL  HS+ + PY C Y  CGK F+  + +K H  +H T  +   C+ 
Sbjct: 7   CGKSFKRSSTLSTHLLIHSD-TRPYPCQY--CGKRFHQKSDMKKHTFIH-TGEKPHKCQV 62
Query: 274 CGKQFKVPCRLREHYK 289
           CGK F     L  H +
Sbjct: 63  CGKAFSQSSNLITHSR 78

>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The Free Structure With Those In Nucleic-Acid Complexes Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP-- 266
           C    CG+ F+   Q   H   H+    PY C ++GC K F L + LK H++VH   P  
Sbjct: 4   CHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 267 EDLVCKGCGKQF 278
           +D  C   GK +
Sbjct: 63  KDDSCSFVGKTW 74

>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex Reveals Two Modes Of Molecular Recognition Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP-- 266
           C    CG+ F+   Q   H   H+    PY C ++GC K F L + LK H++VH   P  
Sbjct: 4   CHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 267 EDLVCKGCGKQF 278
           +D  C   GK +
Sbjct: 63  KDDSCSFVGKTW 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-23
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	7e-19
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-18
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	8e-21
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-19
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-17
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-17
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-20
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-17
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-14
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-18
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	6e-16
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-15
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-16
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-16
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-15
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-07
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-12
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-10
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-12
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-11
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-12
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-10
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	8e-12
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-09
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	6e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-11
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-10
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-08
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-11
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-11
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-10
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-09
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	9e-08
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	3e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	3e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	9e-08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	7e-07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	8e-07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	8e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	6e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	6e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	7e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	9e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-05
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	3e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	4e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	8e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	9e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	9e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	6e-04

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 95.7 bits (239), Expect = 1e-23
 Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 25/202 (12%)

Query: 131 HLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTT 190
                   K + C     +   C   +    KL  H+  H  +K  +PC ++ C K FT+
Sbjct: 3   EKALPVVYKRYIC-----SFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTS 56

Query: 191 LSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV-----SAPYMCDYK 243
           L +L  H + H G K  T  C+  GC  +F T      ++K+H N         Y+C ++
Sbjct: 57  LHHLTRHSLTHTGEKNFT--CDSDGCDLRFTT----KANMKKHFNRFHNIKICVYVCHFE 110

Query: 244 GCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCT 301
            CGK+F     LK HQ  H T      C   GC K+F +P RL+ H K VH      K  
Sbjct: 111 NCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKD- 167

Query: 302 HDGCKLLFSSKSALKRHNKSKH 323
            D C  +  + +   +H    H
Sbjct: 168 -DSCSFVGKTWTLYLKHVAECH 188

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 82.6 bits (205), Expect = 7e-19
 Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHES 294
            Y+C +  CG ++     L++H   H T  +   CK  GC K F     L  H    H  
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH-TGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTG 69

Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM-FPCPLVTCGKSFLRSEHLQEHMLQH 353
            KNF C  DGC L F++K+ +K+H    H      + C    CGK+F +   L+ H   H
Sbjct: 70  EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129

Query: 354 NENKPKFTCPYQDCLMSYVAKSSLYAH 380
            +  P + CP++ C   +   S L  H
Sbjct: 130 TQQLP-YECPHEGCDKRFSLPSRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 81.1 bits (201), Expect = 3e-18
 Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 129 KIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 188
           + HL KH  +KPF C         C  GF S H L RH  +H  +K  + CD   C+ RF
Sbjct: 31  QAHLCKHTGEKPFPC-----KEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRF 84

Query: 189 TTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG 246
           TT +N+K H  R    K     C    CG+ F+   Q   H   H+    PY C ++GC 
Sbjct: 85  TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCD 143

Query: 247 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHE 293
           K F L + LK H++VH           C    K      +H    H+
Sbjct: 144 KRFSLPSRLKRHEKVH-AGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE 355
           K + C+   C   ++    L+ H   KH   + FPC    C K F    HL  H L H  
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69

Query: 356 NKPKFTCPYQDCLMSYVAKSSLYAH 380
            K  FTC    C + +  K+++  H
Sbjct: 70  EKN-FTCDSDGCDLRFTTKANMKKH 93

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 87.3 bits (217), Expect = 8e-21
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLK 229
                D   C++ F +   L  H+         K     C   GC R+ +  K     L 
Sbjct: 2   TDCRWDG--CSQEFDSQEQLVHHINSEHIHGERKEFV--CHWGGCSRELRPFKAQY-MLV 56

Query: 230 EHSNVSA---PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
            H        P+ C ++GC KS+  + +LK+H R H T  +  +C+  GC K F      
Sbjct: 57  VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDR 115

Query: 285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNK 320
            +H    H + K + C   GC   ++  S+L++H K
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 82.3 bits (204), Expect = 5e-19
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 17/135 (12%)

Query: 135 HFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCNKRFTTLSN 193
           H ++K F C       +  +  F +++ L+ HM  H  E  K + C  + C K ++ L N
Sbjct: 29  HGERKEFVCH--WGGCSRELRPFKAQYMLVVHMRRHTGE--KPHKCTFEGCRKSYSRLEN 84

Query: 194 LKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSN----VSAPYMCDYKGCGK 247
           LK H+  H G KP    CE  GC + F      ++   +H N       PY+C   GC K
Sbjct: 85  LKTHLRSHTGEKPYM--CEHEGCSKAFSN----ASDRAKHQNRTHSNEKPYVCKLPGCTK 138

Query: 248 SFYLMASLKSHQRVH 262
            +   +SL+ H +  
Sbjct: 139 RYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 21/164 (12%)

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTS---HDEDK--KCYPCDQKNCNKRFTTLSN 193
              +          C   F S+ +L+ H+ S   H E K   C+        + F     
Sbjct: 2   TDCRWD-------GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM 54

Query: 194 LKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYL 251
           L +HM RH G KP    C   GC + +  ++   THL+ H+    PYMC+++GC K+F  
Sbjct: 55  LVVHMRRHTGEKPHK--CTFEGCRKSYSRLENLKTHLRSHTG-EKPYMCEHEGCSKAFSN 111

Query: 252 MASLKSHQ-RVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVH 292
            +    HQ R H +N +  VCK  GC K++  P  LR+H K VH
Sbjct: 112 ASDRAKHQNRTH-SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 76.9 bits (190), Expect = 4e-17
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 15/155 (9%)

Query: 237 PYMCDYKGCGKSFYLMASLKSH---QRVHVTNPEDLVCKGCG-----KQFKVPCRLREHY 288
                  GC + F     L  H   + +H    ++ VC   G     + FK    L  H 
Sbjct: 3   DCRW--DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHM 59

Query: 289 KAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQE 348
           +  H   K  KCT +GC+  +S    LK H +S H   + + C    C K+F  +    +
Sbjct: 60  R-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAK 117

Query: 349 HMLQ-HNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
           H  + H+  KP + C    C   Y   SSL  H+K
Sbjct: 118 HQNRTHSNEKP-YVCKLPGCTKRYTDPSSLRKHVK 151

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 71.1 bits (175), Expect = 5e-15
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 271 CKGCGKQFKVPCRLREHYKAVHEST--KNFKCTHDGCKLL---FSSKSALKRHNKSKHLN 325
             GC ++F    +L  H  + H     K F C   GC      F ++  L  H       
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH------- 58

Query: 326 MRM------FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYA 379
           MR         C    C KS+ R E+L+ H+  H   KP + C ++ C  ++   S    
Sbjct: 59  MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAK 117

Query: 380 HLKHVHSTNK 389
           H    HS  K
Sbjct: 118 HQNRTHSNEK 127

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFP-----CPLVTCGKSFLRSEHLQEHM 350
            + +   DGC   F S+  L  H  S+H++                 + F     L  HM
Sbjct: 2   TDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59

Query: 351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
            +H   KP   C ++ C  SY    +L  H
Sbjct: 60  RRHTGEKP-HKCTFEGCRKSYSRLENLKTH 88

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 84.9 bits (211), Expect = 3e-20
 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
              C +KGC K F   ++++ H   H       VC  CGK F    +L+ H + VH   K
Sbjct: 5   TIACPHKGCTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRH-QLVHTGEK 61

Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEHM 350
            F+CT +GC   FS    L+ H       +R+      + CP   C K F +S +L+ H+
Sbjct: 62  PFQCTFEGCGKRFSLDFNLRTH-------VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114

Query: 351 LQHNENKP 358
           L H + K 
Sbjct: 115 LTHAKAKN 122

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 76.0 bits (188), Expect = 3e-17
 Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 15/121 (12%)

Query: 173 DKKCYPCDQKNCNKRFTTLSNLKMHMVRHG-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
           + +   C  K C K F   S ++ H+  HG +     C E  CG+ F      S+ LK H
Sbjct: 2   EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV--CAE--CGKAFV----ESSKLKRH 53

Query: 232 SNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLRE 286
             V     P+ C ++GCGK F L  +L++H R+H T   P      GC K+F     L+ 
Sbjct: 54  QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH-TGDRPYVCPFDGCNKKFAQSTNLKS 112

Query: 287 H 287
           H
Sbjct: 113 H 113

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 67.9 bits (167), Expect = 3e-14
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 20/131 (15%)

Query: 137 DKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKM 196
           + +   C      +  C   F     + +H+ +H    + + C +  C K F   S LK 
Sbjct: 2   EPRTIAC-----PHKGCTKMFRDNSAMRKHLHTHGP--RVHVCAE--CGKAFVESSKLKR 52

Query: 197 HMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYL 251
           H + H G KP    C   GCG++F        +L+ H  +     PY+C + GC K F  
Sbjct: 53  HQLVHTGEKPFQ--CTFEGCGKRFSL----DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106

Query: 252 MASLKSHQRVH 262
             +LKSH   H
Sbjct: 107 STNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM-----FPCPLVTCGKSFLRSEHLQEHM 350
           +   C H GC  +F   SA+++H       +         C    CGK+F+ S  L+ H 
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKH-------LHTHGPRVHVCA--ECGKAFVESSKLKRHQ 54

Query: 351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
           L H   KP F C ++ C   +    +L  H
Sbjct: 55  LVHTGEKP-FQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 129 KIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 188
           K H L H  +KPF+C         C   F     L  H+  H  D+  Y C    CNK+F
Sbjct: 51  KRHQLVHTGEKPFQC-----TFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKF 104

Query: 189 TTLSNLKMHMVRH 201
              +NLK H++ H
Sbjct: 105 AQSTNLKSHILTH 117

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 14/157 (8%)

Query: 214 CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH--------VTN 265
            G   Q +KQ  +                K C ++F  M  L +H  +            
Sbjct: 3   SGSSGQPIKQELSCKWIDEA-QLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59

Query: 266 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLN 325
                C   GK FK   +L  H + VH   K F C   GC  +F+    LK H ++ H  
Sbjct: 60  CYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTG 117

Query: 326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 362
            + F C    C + F  S   ++HM  H  +K     
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS-GPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 73.5 bits (181), Expect = 6e-16
 Identities = 42/157 (26%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 245 CGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH---ESTKNFKCT 301
            G S   +    S + +          K C + F     L  H    H       N  C 
Sbjct: 3   SGSSGQPIKQELSCKWID-EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

Query: 302 HDGCKL---LFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEHMLQ 352
            + C      F +K  L  H       +R+      FPCP   CGK F RSE+L+ H   
Sbjct: 62  WEECPREGKSFKAKYKLVNH-------IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114

Query: 353 HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK 389
           H   KP F C ++ C   +   S    H  HVH+++K
Sbjct: 115 HTGEKP-FKCEFEGCDRRFANSSDRKKH-MHVHTSDK 149

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 24/157 (15%)

Query: 117 NCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH------ 170
           +   +   +            +     K        C   F + H+L+ H+T        
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKK-------SCDRTFSTMHELVTHVTMEHVGGPE 54

Query: 171 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHL 228
             +  CY  +     K F     L  H+  H G KP    C   GCG+ F      S +L
Sbjct: 55  QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP--CPFPGCGKIFAR----SENL 108

Query: 229 KEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
           K H        P+ C+++GC + F   +  K H  VH
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 33/144 (22%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 234
           + + C    CNKR+  LS+L+MH  +H    T        G K                 
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKH----T--------GEK----------------- 35

Query: 235 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES 294
             PY CD+K C + F     LK HQR H T  +   CK C ++F     L+ H +  H  
Sbjct: 36  --PYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCKTCQRKFSRSDHLKTHTR-THTG 91

Query: 295 TKNFKCTHDGCKLLFSSKSALKRH 318
            K F C    C+  F+    L RH
Sbjct: 92  EKPFSCRWPSCQKKFARSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 42/129 (32%), Positives = 53/129 (41%), Gaps = 19/129 (14%)

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           +PF C         C   +F    L  H   H  +K  Y CD K+C +RF+    LK H 
Sbjct: 5   RPFMC-----AYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQ 58

Query: 199 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMA 253
            RH G KP    C+   C RKF      S HLK H+       P+ C +  C K F    
Sbjct: 59  RRHTGVKPFQ--CKT--CQRKFSR----SDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110

Query: 254 SLKSHQRVH 262
            L  H  +H
Sbjct: 111 ELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 69.1 bits (170), Expect = 9e-15
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 19/125 (15%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLREHYKAVHES 294
           P+MC Y GC K ++ ++ L+ H R H T   P     K C ++F    +L+ H +  H  
Sbjct: 6   PFMCAYPGCNKRYFKLSHLQMHSRKH-TGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTG 63

Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQE 348
            K F+C    C+  FS    LK H        R       F C   +C K F RS+ L  
Sbjct: 64  VKPFQCKT--CQRKFSRSDHLKTH-------TRTHTGEKPFSCRWPSCQKKFARSDELVR 114

Query: 349 HMLQH 353
           H   H
Sbjct: 115 HHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 129 KIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 188
           ++H  KH  +KP++C     +   C   F    +L RH   H   K  + C    C ++F
Sbjct: 25  QMHSRKHTGEKPYQC-----DFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKT--CQRKF 76

Query: 189 TTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
           +   +LK H   H G KP +  C    C +KF      S  L  H
Sbjct: 77  SRSDHLKTHTRTHTGEKPFS--CRWPSCQKKFAR----SDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 16/91 (17%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEH 349
           + F C + GC   +   S L+ H        R       + C    C + F RS+ L+ H
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMH-------SRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57

Query: 350 MLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
             +H   KP F C  + C   +     L  H
Sbjct: 58  QRRHTGVKP-FQC--KTCQRKFSRSDHLKTH 85

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 65/207 (31%), Positives = 83/207 (40%), Gaps = 25/207 (12%)

Query: 157 FFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGC 214
            F     +        +K  Y C +  C K F+   +L  H   H G KP    C E  C
Sbjct: 3   EFGSSSSVAQAALEPGEKP-YACPE--CGKSFSRSDHLAEHQRTHTGEKPYK--CPE--C 55

Query: 215 GRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC 271
           G+ F         L  H        PY C    CGKSF   A+L++HQR H T  +   C
Sbjct: 56  GKSFS----DKKDLTRHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTH-TGEKPYAC 108

Query: 272 KGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC 331
             CGK F     LR H +  H   K +KC    C   FS +  L  H ++ H   + + C
Sbjct: 109 PECGKSFSQLAHLRAHQR-THTGEKPYKCPE--CGKSFSREDNLHTHQRT-HTGEKPYKC 164

Query: 332 PLVTCGKSFLRSEHLQEHMLQHNENKP 358
           P   CGKSF R + L  H   H   K 
Sbjct: 165 P--ECGKSFSRRDALNVHQRTHTGKKT 189

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 63/198 (31%), Positives = 81/198 (40%), Gaps = 25/198 (12%)

Query: 188 FTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDY 242
               S+         G KP    C E  CG+ F      S HL EH        PY C  
Sbjct: 3   EFGSSSSVAQAALEPGEKPYA--CPE--CGKSFS----RSDHLAEHQRTHTGEKPYKC-- 52

Query: 243 KGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
             CGKSF     L  HQR H T  +   C  CGK F     LR H +  H   K + C  
Sbjct: 53  PECGKSFSDKKDLTRHQRTH-TGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPE 110

Query: 303 DGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 362
             C   FS  + L+ H ++ H   + + CP   CGKSF R ++L  H   H   KP + C
Sbjct: 111 --CGKSFSQLAHLRAHQRT-HTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKP-YKC 164

Query: 363 PYQDCLMSYVAKSSLYAH 380
              +C  S+  + +L  H
Sbjct: 165 --PECGKSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 59/185 (31%), Positives = 75/185 (40%), Gaps = 29/185 (15%)

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           KP+ C         C   F     L  H  +H  +K  Y C +  C K F+   +L  H 
Sbjct: 20  KPYACP-------ECGKSFSRSDHLAEHQRTHTGEKP-YKCPE--CGKSFSDKKDLTRHQ 69

Query: 199 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMA 253
             H G KP    C E  CG+ F        +L+ H        PY C    CGKSF  +A
Sbjct: 70  RTHTGEKPYK--CPE--CGKSF----SQRANLRAHQRTHTGEKPYAC--PECGKSFSQLA 119

Query: 254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKS 313
            L++HQR H T  +   C  CGK F     L  H +  H   K +KC    C   FS + 
Sbjct: 120 HLRAHQRTH-TGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPE--CGKSFSRRD 175

Query: 314 ALKRH 318
           AL  H
Sbjct: 176 ALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 248 SFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKL 307
           S +  +S  +   +     +   C  CGK F     L EH +  H   K +KC    C  
Sbjct: 2   SEFGSSSSVAQAALE-PGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPE--CGK 57

Query: 308 LFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 367
            FS K  L RH ++ H   + + CP   CGKSF +  +L+ H   H   KP + CP  +C
Sbjct: 58  SFSDKKDLTRHQRT-HTGEKPYKCP--ECGKSFSQRANLRAHQRTHTGEKP-YACP--EC 111

Query: 368 LMSYVAKSSLYAH 380
             S+   + L AH
Sbjct: 112 GKSFSQLAHLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.5 bits (109), Expect = 6e-06
 Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 25/129 (19%)

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           KP+KC         C   F  +  L  H  +H  +K  Y C +  C K F+ L++L+ H 
Sbjct: 76  KPYKCP-------ECGKSFSQRANLRAHQRTHTGEKP-YACPE--CGKSFSQLAHLRAHQ 125

Query: 199 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCGKSFYLMA 253
             H G KP    C E  CG+ F        +L  H        PY C    CGKSF    
Sbjct: 126 RTHTGEKPYK--CPE--CGKSFS----REDNLHTHQRTHTGEKPYKC--PECGKSFSRRD 175

Query: 254 SLKSHQRVH 262
           +L  HQR H
Sbjct: 176 ALNVHQRTH 184

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 37/119 (31%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST- 295
            + CDY GC K +   + LK+H R H                                T 
Sbjct: 15  IHYCDYPGCTKVYTKSSHLKAHLRTH--------------------------------TG 42

Query: 296 -KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
            K +KCT +GC   F+    L RH   KH   + F C +  C +SF RS+HL  HM +H
Sbjct: 43  EKPYKCTWEGCDWRFARSDELTRH-YRKHTGAKPFQCGV--CNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 58.0 bits (141), Expect = 5e-11
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 174 KKCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
           ++ + CD   C K +T  S+LK H+  H   KP    C   GC  +F    + + H ++H
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYK--CTWEGCDWRFARSDELTRHYRKH 70

Query: 232 SNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
           +    P+ C    C +SF     L  H + H
Sbjct: 71  TGAK-PFQCGV--CNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 98  SSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGF 157
           S + G + +K+++  C    C       +  K HL  H  +KP+KC         C W F
Sbjct: 3   SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKC-----TWEGCDWRF 57

Query: 158 FSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
               +L RH   H   K  + C    CN+ F+   +L +HM RH
Sbjct: 58  ARSDELTRHYRKHTGAKP-FQCGV--CNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE 355
           +   C + GC  +++  S LK H    H   + + C    C   F RS+ L  H  +H  
Sbjct: 14  RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72

Query: 356 NKPKFTCPYQDCLMSYVAKSSLYAHLK 382
            KP F C    C  S+     L  H+K
Sbjct: 73  AKP-FQCG--VCNRSFSRSDHLALHMK 96

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 309 FSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 367
             S               R+  C    C K + +S HL+ H+  H   KP + C ++ C
Sbjct: 3   SGSSGPDLEK-------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGC 53

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 61.0 bits (149), Expect = 4e-12
 Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 37/119 (31%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST- 295
            + CDY GCGK++   + LK+H R H                                T 
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLRTH--------------------------------TG 32

Query: 296 -KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
            K + C  DGC   F+    L RH   KH   R F C    C ++F RS+HL  HM +H
Sbjct: 33  EKPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPFQCQK--CDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 54.5 bits (132), Expect = 6e-10
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 174 KKCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
              + CD   C K +T  S+LK H+  H   KP    C+  GCG KF    + + H ++H
Sbjct: 3   TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH--CDWDGCGWKFARSDELTRHYRKH 60

Query: 232 SNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
           +    P+ C    C ++F     L  H + H
Sbjct: 61  TGHR-PFQCQK--CDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 49.1 bits (118), Expect = 5e-08
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN 354
           T    C + GC   ++  S LK H    H   + + C    CG  F RS+ L  H  +H 
Sbjct: 3   TATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 355 ENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
            ++P F C    C  ++     L  H+K
Sbjct: 62  GHRP-FQCQ--KCDRAFSRSDHLALHMK 86

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 113 CPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 172
           C    C  T    +  K HL  H  +KP+ C     +   C W F    +L RH   H  
Sbjct: 8   CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC-----DWDGCGWKFARSDELTRHYRKHTG 62

Query: 173 DKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
            +  + C +  C++ F+   +L +HM RH
Sbjct: 63  HRP-FQCQK--CDRAFSRSDHLALHMKRH 88

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 59.5 bits (145), Expect = 8e-12
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML 351
              +    C   GC  +FS++  L  H K +H++ + F CP   CGKSF   +HL+EHM 
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 352 QHNENKPKFTCP 363
            H++ +  + C 
Sbjct: 62  LHSDTRD-YICE 72

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHM-VRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
              PCD   C + F+    L  H   +H   K  +  C E  CG+ F     +  HLKEH
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS--CPEPACGKSF----NFKKHLKEH 59

Query: 232 SNV---SAPYMCDYKGCGKSF 249
             +   +  Y+C++   G S 
Sbjct: 60  MKLHSDTRDYICEF--SGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 49.1 bits (118), Expect = 4e-08
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 329 FPCPLVTCGKSFLRSEHLQEHM-LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST 387
            PC    CG+ F   ++L  H   QH   K  F+CP   C  S+  K  L  H   +HS 
Sbjct: 8   MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEH-MKLHSD 65

Query: 388 NK 389
            +
Sbjct: 66  TR 67

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 48.7 bits (117), Expect = 6e-08
 Identities = 24/104 (23%), Positives = 32/104 (30%), Gaps = 32/104 (30%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
              CD+ GCG+ F     L  H++                               H   K
Sbjct: 7   GMPCDFPGCGRIFSNRQYLNHHKKY-----------------------------QHIHQK 37

Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSF 340
           +F C    C   F+ K  LK H K  H + R + C     G S 
Sbjct: 38  SFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICE--FSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
               C         C   F ++  L  H       +K + C +  C K F    +LK HM
Sbjct: 6   SGMPCDFPG-----CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60

Query: 199 VRHG--KPLTLCCEELGCGRKF 218
             H   +     CE    G   
Sbjct: 61  KLHSDTRDYI--CEF--SGPSS 78

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 238 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHEST 295
           Y+C ++ CGK+F     LK HQ  H T      C   GC K+F +P RL+ H K VH   
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGY 59

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKH 323
              K   D C  +  + +   +H    H
Sbjct: 60  PCKKD--DSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 28/116 (24%), Positives = 37/116 (31%), Gaps = 32/116 (27%)

Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 236
           Y C  +NC K F   + LK+H   H                        T          
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSH------------------------TQQL------- 30

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 292
           PY C ++GC K F L + LK H++VH           C    K      +H    H
Sbjct: 31  PYECPHEGCDKRFSLPSRLKRHEKVH-AGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 298 FKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK 357
           + C  + C   F   + LK H +  H     + CP   C K F     L+ H   H    
Sbjct: 2   YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60

Query: 358 PKFTCPYQDCLMSYVAKSSLYAHLKHVH 385
                    C       +    H+   H
Sbjct: 61  C-KKD--DSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 328 MFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
           M+ C    CGK+F +   L+ H   H +  P + CP++ C   +   S L  H
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRH 52

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 113 CPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 172
           C   NC       N  K+H   H  + P++C      +  C   F    +L RH   H  
Sbjct: 4   CHFENCGKAFKKHNQLKVHQFSHTQQLPYEC-----PHEGCDKRFSLPSRLKRHEKVHAG 58

Query: 173 DK--KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
               K   C      K +T    LK     H
Sbjct: 59  YPCKKDDSCSF--VGKTWTLY--LKHVAECH 85

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH--YKAVHES 294
              C    C K F     LK H R H T  +   C  CGK +     L EH     ++ S
Sbjct: 7   GVEC--PTCHKKFLSKYYLKVHNRKH-TGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63

Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM 350
            + F C+   C+  F  +  L+ H  S H     + C   +C + F++ + LQ HM
Sbjct: 64  EQVFTCSV--CQETFRRRMELRLHMVS-HTGEMPYKCS--SCSQQFMQKKDLQSHM 114

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 23/130 (17%)

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
              +C         C   F SK+ L  H   H  +K  + C +  C K +    NL  H 
Sbjct: 6   SGVECP-------TCHKKFLSKYYLKVHNRKHTGEKP-FECPK--CGKCYFRKENLLEHE 55

Query: 199 VRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMA 253
            R+      +  T  C    C   F+   +   H+  H+    PY C    C + F    
Sbjct: 56  ARNCMNRSEQVFT--CSV--CQETFRRRMELRLHMVSHTG-EMPYKC--SSCSQQFMQKK 108

Query: 254 SLKSHQ-RVH 262
            L+SH  ++H
Sbjct: 109 DLQSHMIKLH 118

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 15/93 (16%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
           + Y C  ++C++RF+   +L  H+  H G KP    C    C R F      S HL  H 
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ--CRI--CMRNF----SRSDHLTTHI 54

Query: 233 NV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
                  P+ CD   CG+ F      K H ++H
Sbjct: 55  RTHTGEKPFACDI--CGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 55.2 bits (134), Expect = 3e-10
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
           PY C  + C + F    SL  H R+H T  +   C+ C + F     L  H +  H   K
Sbjct: 4   PYACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK 61

Query: 297 NFKCTHDGCKLLFSSKSALKRH 318
            F C    C   F+     KRH
Sbjct: 62  PFACDI--CGRKFARSDERKRH 81

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 18/93 (19%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEH 349
           + + C  + C   FS   +L RH       +R+      F C    C ++F RS+HL  H
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRH-------IRIHTGQKPFQCR--ICMRNFSRSDHLTTH 53

Query: 350 MLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
           +  H   KP F C    C   +        H K
Sbjct: 54  IRTHTGEKP-FACD--ICGRKFARSDERKRHTK 83

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 52.1 bits (126), Expect = 6e-09
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH--ES 294
              C  + CGK F  +  L  H+  H +  +   C  CG +FK   R+  H    H    
Sbjct: 7   GVAC--EICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSV 62

Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKH 323
            K + C    C   FS    L  H K  H
Sbjct: 63  GKPYICQS--CGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN- 354
               C    C  +F     L RH  S H   + + CP   CG  F R + +  H+  H+ 
Sbjct: 6   SGVACEI--CGKIFRDVYHLNRHKLS-HSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDG 60

Query: 355 -ENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 386
              KP + C  Q C   +     L  H+K VHS
Sbjct: 61  SVGKP-YIC--QSCGKGFSRPDHLNGHIKQVHS 90

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDK--KCYPCDQKNCNKRFTTLSNLKM 196
              +C++       C +    K  L  H   H E      +PC+   C KRF    ++  
Sbjct: 6   SGLQCEI-------CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAA 56

Query: 197 HMVRHGKPLTLCCEE 211
           H  +    L L  +E
Sbjct: 57  HRSKSHPALLLAPQE 71

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL--VCKGCGKQFKVPCRLREHYKAVHES 294
              C+   CG +    ASL  HQR H      L   C+ CGK+F+ P  +  H    H +
Sbjct: 7   GLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64

Query: 295 TK 296
             
Sbjct: 65  LL 66

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 32/102 (31%)

Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 236
             C+   C       ++L  H  +H + +                               
Sbjct: 8   LQCEI--CGFTCRQKASLNWHQRKHAETV---------AAL------------------- 37

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 278
            + C++  CGK F    S+ +H+            +  G   
Sbjct: 38  RFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNK--SKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
              +C    C      K++L  H +  ++ +    FPC    CGK F + + +  H  + 
Sbjct: 6   SGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKS 61

Query: 354 NENKPKFTC 362
           +        
Sbjct: 62  HPALLLAPQ 70

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
           + + C  + C   FS    L RH    H   + F C +  C ++F RS+HL  H+  H
Sbjct: 18  RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 187 RFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG 246
               ++NL  ++V   +P    C    C R+F    + + H++ H+    P+ C    C 
Sbjct: 2   EPHPMNNLLNYVVPKMRPYA--CPVESCDRRFSRSDELTRHIRIHTGQK-PFQCRI--CM 56

Query: 247 KSFYLMASLKSHQRVH 262
           ++F     L +H R H
Sbjct: 57  RNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 125 LNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNC 184
           +N    +++     +P+ C         C   F    +L RH+  H   K  + C    C
Sbjct: 6   MNNLLNYVVPK--MRPYAC-----PVESCDRRFSRSDELTRHIRIHTGQKP-FQCRI--C 55

Query: 185 NKRFTTLSNLKMHMVRH 201
            + F+   +L  H+  H
Sbjct: 56  MRNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 225 STHLKEHSNVSA-PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCR 283
             +L  +      PY C  + C + F     L  H R+H T  +   C+ C + F     
Sbjct: 6   MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDH 64

Query: 284 LREHYK 289
           L  H +
Sbjct: 65  LTTHIR 70

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 307 LLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP 363
           +     + L  +   K    R + CP+ +C + F RS+ L  H+  H   KP F C 
Sbjct: 1   MEPHPMNNLLNYVVPKM---RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCR 53

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 159 SKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGR 216
             + LL ++       + Y C  ++C++RF+    L  H+  H   KP    C    C R
Sbjct: 5   PMNNLLNYVVPKM---RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ--CRI--CMR 57

Query: 217 KFQTMKQYSTHLKEHS 232
            F      +TH++ H+
Sbjct: 58  NFSRSDHLTTHIRTHT 73

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 48.2 bits (115), Expect = 9e-08
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML 351
               ++  C+H GC   +   S LK H +  H   + F C    C + F RS+ L  H  
Sbjct: 12  SSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRR 70

Query: 352 QH 353
            H
Sbjct: 71  TH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 313 SALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 367
           S+     +     +R   C    CGK++ +S HL+ H   H   KP F+C ++ C
Sbjct: 2   SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGC 55

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 192 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCGKS 248
           S      +   +  +  C   GCG+ +      S+HLK H+       P+ C +KGC + 
Sbjct: 3   SGSSGPQIDSSRIRSHICSHPGCGKTYFK----SSHLKAHTRTHTGEKPFSCSWKGCERR 58

Query: 249 FYLMASLKSHQRVH 262
           F     L  H+R H
Sbjct: 59  FARSDELSRHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 31/97 (31%)

Query: 222 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 281
              S    + S     ++C + GCGK+++  + LK+H R H                   
Sbjct: 3   SGSSGPQIDSSR-IRSHICSHPGCGKTYFKSSHLKAHTRTHT------------------ 43

Query: 282 CRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRH 318
                         K F C+  GC+  F+    L RH
Sbjct: 44  ------------GEKPFSCSWKGCERRFARSDELSRH 68

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 19/95 (20%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
           K + C    C + F+   +L  H+  H G KP    C+   CGRKF      S   K H 
Sbjct: 2   KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA--CDI--CGRKFAR----SDERKRHR 51

Query: 233 NV--SAPYMCDYKGCGKSFYLMASLKSHQ---RVH 262
           ++    P + D     +       L++     +  
Sbjct: 52  DIQHILPILEDK--VEELLSKNYHLENEVARLKKL 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
           P+ C    C ++F     L +H R H T  +   C  CG++F      + H    H    
Sbjct: 3   PFQCRI--CMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRDIQHI--L 57

Query: 297 NFKCTHDGCKLLFSSKSALKRHNK 320
                    + L S    L+    
Sbjct: 58  PILEDK--VEELLSKNYHLENEVA 79

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 19/94 (20%)

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
           KPF+C         CM  F     L  H+ +H  +K  + CD   C ++F      K H 
Sbjct: 2   KPFQC-------RICMRNFSRSDHLTTHIRTHTGEKP-FACDI--CGRKFARSDERKRHR 51

Query: 199 VRHG-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
                 P+    ++             + HL+  
Sbjct: 52  DIQHILPIL--EDK--VEELL----SKNYHLENE 77

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 21/94 (22%)

Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEH 349
           K F+C    C   FS    L  H       +R       F C    CG+ F RS+  + H
Sbjct: 2   KPFQCRI--CMRNFSRSDHLTTH-------IRTHTGEKPFACD--ICGRKFARSDERKRH 50

Query: 350 MLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKH 383
               +   P                  L   +  
Sbjct: 51  RDIQHI-LP-ILE--DKVEELLSKNYHLENEVAR 80

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
            Y C    CGKSF   +    H  +H        C  CGK+FK+   L  H K +H   K
Sbjct: 10  LYPCQ---CGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIK 64

Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHL 346
            ++C    C   F  + +  RH        + +        ++   +   
Sbjct: 65  PYECNI--CAKRFMWRDSFHRH---VTSCTKSYEAA--KAEQNTTEASGP 107

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 31/109 (28%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
           K YPC    C K FT  S    HM  H G +P    C    CG+KF    +   HL  H 
Sbjct: 9   KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYG--CGV--CGKKF----KMKHHLVGHM 57

Query: 233 NV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 278
            +     PY C    C K F    S   H+ V  +  +        +  
Sbjct: 58  KIHTGIKPYEC--NICAKRFMWRDSF--HRHVT-SCTKSYEAAKAEQNT 101

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSK-HLNMRMFPCPLVTCGKSFLRSEHLQEHM 350
            E    ++C    C  +++  S   RH  +    N++++PCP   C K F R +++  H+
Sbjct: 5   KEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHV 60

Query: 351 LQHNE 355
              ++
Sbjct: 61  KIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHV-TNPEDLVCKGCGKQFKVPCRLREHYKAVHE 293
            Y C    C + +  +++   H       N +   C  C K+F     +  H K +H+
Sbjct: 10  TYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHM-TSHDEDKKCYPCDQKNCNKRFTTLSNLKMH 197
             ++CK+       C   +       RH  TSH  + K YPC    C K FT   N+  H
Sbjct: 9   HTYRCKV-------CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAH 59

Query: 198 MVRH 201
           +   
Sbjct: 60  VKII 63

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 46.6 bits (112), Expect = 5e-07
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
             + C+   C K F+    LK HM  H G KP    C+   C          + HL+ HS
Sbjct: 7   GPHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYK--CKT--CDYAAADSSSLNKHLRIHS 60

Query: 233 NVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
           +   P+ C  + C  +    + L  H R H
Sbjct: 61  D-ERPFKC--QICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 26/122 (21%), Positives = 36/122 (29%), Gaps = 37/122 (30%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
           P+ C  + CGK F     LK+H R H T  +   CK C         L +H   +H   +
Sbjct: 8   PHKC--EVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKH-LRIHSDER 63

Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN 356
            FKC                                   C  +   S  L  H+  H  +
Sbjct: 64  PFKCQI---------------------------------CPYASRNSSQLTVHLRSHTGD 90

Query: 357 KP 358
             
Sbjct: 91  SG 92

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTN 265
           CE   CG+ F         LK H        PY C  K C  +    +SL  H R+H ++
Sbjct: 11  CEV--CGKCFS----RKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIH-SD 61

Query: 266 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 300
                C+ C    +   +L  H +  H        
Sbjct: 62  ERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 46.3 bits (111), Expect = 7e-07
 Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 38/126 (30%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
            ++C  K CG+ F    +L  H+R H T+     C  C K F+    LR+H + +H   K
Sbjct: 17  EFIC--KFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHLRDH-RYIHSKEK 72

Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN 356
            FKC                                   CGK F +S  L  H   H + 
Sbjct: 73  PFKCQE---------------------------------CGKGFCQSRTLAVHKTLHMQT 99

Query: 357 KPKFTC 362
               T 
Sbjct: 100 SS-PTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 17/115 (14%)

Query: 192 SNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCG 246
           S      +     K     C+   CGR F      S +L  H        PY C    C 
Sbjct: 3   SGSSGGRLPSKTKKEFI--CKF--CGRHFT----KSYNLLIHERTHTDERPYTC--DICH 52

Query: 247 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
           K+F     L+ H+ +H +  +   C+ CGK F     L  H K +H  T +    
Sbjct: 53  KAFRRQDHLRDHRYIH-SKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTSSPTAA 105

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH--ESTKNFKCTHDGCKLLFSS 311
           S  S  R H +  +   C  C  +F     ++ H       E+   F C H  C  + + 
Sbjct: 2   SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPH--CDTVIAR 57

Query: 312 KSALKRHNKSKH 323
           KS L  H + +H
Sbjct: 58  KSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 34/99 (34%)

Query: 162 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 221
                  +H  +K  Y C    C+ RFT    +KMH+++                     
Sbjct: 2   SSGSSGRTHSGEKP-YECYI--CHARFTQSGTMKMHILQK-------------------- 38

Query: 222 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQR 260
                    H+   A + C +  C       + L  H R
Sbjct: 39  ---------HTENVAKFHCPH--CDTVIARKSDLGVHLR 66

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 336 CGKSFLRSEHLQEHMLQHN-ENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 386
           C   F +S  ++ H+LQ + EN  KF CP+  C      KS L  HL+  HS
Sbjct: 21  CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHS 70

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.5 bits (101), Expect = 9e-06
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 7/59 (11%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL---VCKGCGKQFKVPCRLREHYKAVH 292
           PY C    C   F    ++K H     T  E++    C  C         L  H +  H
Sbjct: 15  PYECYI--CHARFTQSGTMKMHILQKHT--ENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 127 TFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCN 185
           +       H  +KP++C +       C   F     +  H+     E+   + C    C+
Sbjct: 2   SSGSSGRTHSGEKPYECYI-------CHARFTQSGTMKMHILQKHTENVAKFHCPH--CD 52

Query: 186 KRFTTLSNLKMHM 198
                 S+L +H+
Sbjct: 53  TVIARKSDLGVHL 65

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 59/366 (16%), Positives = 99/366 (27%), Gaps = 93/366 (25%)

Query: 57  VRHADVLIMPANHV--LTVSWVYEEDAITEALQSL--GINKEYFISSTGGKNSKKQQLWS 112
                V       +  L +      + + E LQ L   I+  +   S    N        
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-------- 222

Query: 113 CPIVNCNFTSVNLNTF---KIH---LL-----------KHFDKKPFKCK--LTT--ANNT 151
              +  +     L      K +   LL             F+     CK  LTT     T
Sbjct: 223 -IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVT 278

Query: 152 PCMWGFFSKHKLLRHMT---SHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLC 208
             +    + H  L H +   + DE K       K  + R   L       V    P  L 
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLP----REVLTTNPRRLS 331

Query: 209 CEELGCGRKFQTM-------KQYS----THLKEHS-NVSAPYMCDYKGCGKSFYLMASLK 256
                     +         K  +    T + E S NV  P   +Y+     F  ++   
Sbjct: 332 ----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKM---FDRLSVFP 382

Query: 257 SHQRVHVT--------------NPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
                H+               +   +V K   K   V  + +E   ++       K   
Sbjct: 383 PS--AHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 303 DGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM--LQHNENKPKF 360
           +    L   +S +  +N  K  +      P       +    H+  H+  ++H E    F
Sbjct: 440 ENEYAL--HRSIVDHYNIPKTFDSDDLI-PPYLDQYFY---SHIGHHLKNIEHPERMTLF 493

Query: 361 TCPYQD 366
              + D
Sbjct: 494 RMVFLD 499

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 46/230 (20%)

Query: 50  ENMFVFCVRHADVLIMPANHVLTVSW----VYEEDAITEALQ--SLGINKEYFISSTGGK 103
           + + VF        I     +L++ W      +   +   L   SL + K+         
Sbjct: 376 DRLSVF---PPSAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQP-------- 421

Query: 104 NSKKQQLWSCPIVNCNFTSVNLNTFKIH--LLKHFDKKPFKCKLTTANNTPCMWGFFSKH 161
              K+   S P +         N + +H  ++ H++    K   +     P +  +F  H
Sbjct: 422 ---KESTISIPSIYLELKVKLENEYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYSH 476

Query: 162 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 221
            +  H+ + +  ++         + RF  L   K   +RH    T            Q +
Sbjct: 477 -IGHHLKNIEHPERMTLFRMVFLDFRF--LEQ-K---IRHDS--TAWNASGSILNTLQQL 527

Query: 222 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE-DLV 270
           K Y  ++ ++       +         F     L   +   + +   DL+
Sbjct: 528 KFYKPYICDNDPKYERLVNAI----LDF-----LPKIEENLICSKYTDLL 568

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 33/116 (28%)

Query: 163 LLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMK 222
                 +H  +K  Y C    C+K F     L MH                         
Sbjct: 3   SGSSGRTHTGEKP-YACSH--CDKTFRQKQLLDMHF------------------------ 35

Query: 223 QYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 278
               +   +  V A ++C    CGK+F    ++  H       P+ +  +  G   
Sbjct: 36  --KRYHDPNF-VPAAFVC--SKCGKTFTRRNTMARHADNC-AGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL---VCKGCGKQFKVPCRLREHYKAVHE 293
           PY C    C K+F     L  H + +          VC  CGK F     +  H      
Sbjct: 15  PYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCA 71

Query: 294 STKNFKCTH 302
                +  +
Sbjct: 72  GPDGVEGEN 80

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 225 STHLKEHSNVSA---PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 281
             H   HS+++    PY CD   C  SF    +L SH+ VH T  +   C  CG QF  P
Sbjct: 2   GHHHHHHSHMTHSDKPYKCDR--CQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRP 58

Query: 282 CRLREH 287
             L+ H
Sbjct: 59  ANLKTH 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 35/88 (39%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 234
               C +  C+   ++ + L++H   H            C  +                 
Sbjct: 8   HPEKCSE--CSYSCSSKAALRIHERIH------------CTDR----------------- 36

Query: 235 SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
             P+ C+Y  C       ++L  H +  
Sbjct: 37  --PFKCNY--CSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 289
           P  C    C  S    A+L+ H+R+H        C  C    K P  L +H K
Sbjct: 9   PEKCSE--CSYSCSSKAALRIHERIH-CTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 134 KHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSN 193
                 P KC         C +   SK  L  H   H  D+  + C+   C+      SN
Sbjct: 3   SGSSGHPEKCS-------ECSYSCSSKAALRIHERIHCTDRP-FKCNY--CSFDTKQPSN 52

Query: 194 LKMHMVRH 201
           L  HM + 
Sbjct: 53  LSKHMKKF 60

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 293 ESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQ 352
           E+ + ++C    C    SS      H +          CP   C   F   E  QEH  +
Sbjct: 12  ENKEVYQCRL--CNAKLSSLLEQGSHERLCR---NAAVCPY--CSLRFFSPELKQEHESK 64

Query: 353 HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNKIT 391
                 K TC   +C+ ++ +  S++ H   VH+ N + 
Sbjct: 65  CEYK--KLTCL--ECMRTFKSSFSIWRHQVEVHNQNNMA 99

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 24/109 (22%), Positives = 32/109 (29%), Gaps = 9/109 (8%)

Query: 229 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHY 288
                    Y C    C      +    SH+R+        VC  C  +F  P   +EH 
Sbjct: 8   ASPVENKEVYQCRL--CNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEH- 61

Query: 289 KAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCG 337
                  K   C    C   F S  ++ RH    H    M P    + G
Sbjct: 62  -ESKCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSSG 107

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 39.7 bits (94), Expect = 8e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 17/91 (18%)

Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 234
           + C    C K F   S L  H++ H   +P    C+   CG++F       + +K+H+ +
Sbjct: 2   FDCKI--CGKSFKRSSTLSTHLLIHSDTRPYP--CQY--CGKRFH----QKSDMKKHTFI 51

Query: 235 ---SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
                P+ C  + CGK+F   ++L +H R H
Sbjct: 52  HTGEKPHKC--QVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 39.7 bits (94), Expect = 9e-05
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPED 268
           C+   CG+ F+     STHL  HS+ + PY C Y  CGK F+  + +K H  +H T  + 
Sbjct: 4   CKI--CGKSFKRSSTLSTHLLIHSD-TRPYPCQY--CGKRFHQKSDMKKHTFIH-TGEKP 57

Query: 269 LVCKGCGKQFKVPCRLREH 287
             C+ CGK F     L  H
Sbjct: 58  HKCQVCGKAFSQSSNLITH 76

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 37/116 (31%)

Query: 238 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKN 297
           + C  K CGKSF   ++L +H  +H ++     C+ CGK+F     +++H   +H   K 
Sbjct: 2   FDC--KICGKSFKRSSTLSTHLLIH-SDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKP 57

Query: 298 FKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
            KC                                   CGK+F +S +L  H  +H
Sbjct: 58  HKCQV---------------------------------CGKAFSQSSNLITHSRKH 80

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.5 bits (94), Expect = 9e-05
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 4/102 (3%)

Query: 254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAV-HESTKNFKCTHDGCKLLFSSK 312
           S K +  +  T      CK C   +     L  H     H    N +  ++  K     +
Sbjct: 6   SGKLYGSIF-TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64

Query: 313 SALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN 354
                  + K    ++  C    CG SF   + L  HM++  
Sbjct: 65  KRSLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVHMIKTK 104

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 166 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM--VRHGKPLTLCCEELGCGRKFQTMKQ 223
           + +      K + C    C+  + TL  L +HM    H +      +     R  +  K+
Sbjct: 10  YGSIFTGASK-FRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66

Query: 224 YSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 258
               ++   +      C Y  CG SF  +  L  H
Sbjct: 67  SLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVH 99

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 287
           PY C    CGK+F   + L  HQRVH T  +   C  CGK F     L  H
Sbjct: 14  PYGC--VECGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLINH 61

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 7/74 (9%)

Query: 264 TNPEDLVCKGCGKQFKVPCRLREHYKAVH---ESTKNFKCTHDGCKLL---FSSKSALKR 317
                   K C + F     L  H    H       N  C  + C      F +K  L  
Sbjct: 21  EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80

Query: 318 HNKSKHLNMRMFPC 331
           H +  H   +  P 
Sbjct: 81  HIRV-HTGEKSGPS 93

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 292
            ++C+   C ++F     LK H R H TN +   C  C + F     L  H + +H
Sbjct: 2   SFVCEV--CTRAFARQEHLKRHYRSH-TNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 287
            Y CD   CGKSF   + L  H+R H T  +   C  CGK F     L  H
Sbjct: 18  RYKCDE--CGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLIGH 65

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 226 THLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
           +     +    P+ C + GCG  F     L  H+R H
Sbjct: 2   SSGSSGTG-EKPFACTWPGCGWRFSRSDELSRHRRSH 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.85
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.84
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.83
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.75
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.73
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.72
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.72
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.72
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.71
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.71
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.69
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.69
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.67
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.67
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.65
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.64
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.62
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.61
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.61
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.6
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.56
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.55
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.54
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.53
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.53
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.51
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.51
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.5
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.48
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.47
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.47
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.47
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.46
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.46
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.45
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.45
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.45
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.44
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.44
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.43
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.43
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.42
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.42
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.41
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.41
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.41
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.4
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.4
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.39
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.38
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.33
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.32
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.32
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.31
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.29
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.27
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.26
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.24
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.21
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.21
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.18
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.15
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.15
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.06
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.05
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.05
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.03
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.03
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.03
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.02
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.01
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.0
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.0
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.99
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.98
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.98
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.97
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.96
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.96
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.96
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.96
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.94
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.93
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.92
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.91
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.91
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.9
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.9
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.9
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.89
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.89
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.87
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.87
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.87
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.86
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.86
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.86
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.85
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.85
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.85
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.85
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.85
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.84
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.84
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.84
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.84
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.83
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.83
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.83
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.82
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.8
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.79
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.79
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.78
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.76
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.75
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.75
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.74
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.74
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.74
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.73
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.71
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.67
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.65
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.63
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.62
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.61
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.59
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.55
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.52
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.51
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.5
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.49
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.48
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.48
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.47
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.41
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.4
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.38
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.37
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.34
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.33
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.29
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.28
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.18
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.16
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.15
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.15
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.15
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.14
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.14
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.12
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.09
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.09
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.08
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.06
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.06
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.06
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.05
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.03
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.03
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.03
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.98
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.95
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.95
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.94
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.93
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.15
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.89
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.89
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.1
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.84
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.83
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.83
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.81
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.8
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.79
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.77
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.76
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.76
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.75
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.75
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.75
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.74
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.73
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.91
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.68
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.64
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.63
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.79
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.75
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.43
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.53
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.95
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.9
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.69
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.32
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.15
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.05
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.67
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.9
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.15
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	90.97
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.09
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.84

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=7.3e-36  Score=252.62  Aligned_cols=183  Identities=31%  Similarity=0.639  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHcCCCCccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhHhccccccCCCCCccc
Q psy11069        191 LSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLV  270 (391)
Q Consensus       191 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~  270 (391)
                      ...|..|++.+.++++|.|..  |++.|.+...|..|++.|.+ +++|.|..  |++.|.+...|..|+++| .++++|.
T Consensus         6 ~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~   79 (190)
T 2i13_A            6 SSSSVAQAALEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTG-EKPYKCPE--CGKSFSDKKDLTRHQRTH-TGEKPYK   79 (190)
T ss_dssp             ---------------------------CCSSHHHHHGGGCC----CCEECTT--TCCEESSHHHHHHHHHHH-HCCCCEE
T ss_pred             hccchhhhhhcCCCCCCcCCC--CccccCCHHHHHHHHHHcCC-CCCccCCC--cCchhCCHHHHHHHHHhc-CCCCCcc
Confidence            456778888888888999998  99999999999999988876 78899986  999999999999999888 4567899


Q ss_pred             cCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHH
Q psy11069        271 CKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM  350 (391)
Q Consensus       271 C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~  350 (391)
                      |+.|++.|.+...|..|++ .|.++++|.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.+...|..|+
T Consensus        80 C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~  153 (190)
T 2i13_A           80 CPECGKSFSQRANLRAHQR-THTGEKPYACPE--CGKSFSQLAHLRAHQR-THTGEKPYKCPE--CGKSFSREDNLHTHQ  153 (190)
T ss_dssp             CTTTCCEESCHHHHHHHHH-HHHTCCCEECTT--TCCEESSHHHHHHHHH-HHHCCCCEECTT--TCCEESCHHHHHHHH
T ss_pred             CcccCCccCCHHHHHHHHH-hcCCCCCCcCCC--CCCccCCHHHHHHHHH-HhCCCCCeECCC--CCcccCCHHHHHHHH
Confidence            9999999999999999987 788899999987  9999999999999998 588899999997  999999999999999


Q ss_pred             HHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       351 ~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      ++|++++ +|.|+.  |++.|.++..|..|+++|+++.
T Consensus       154 ~~H~~~~-~~~C~~--C~~~f~~~~~L~~H~~~H~~~k  188 (190)
T 2i13_A          154 RTHTGEK-PYKCPE--CGKSFSRRDALNVHQRTHTGKK  188 (190)
T ss_dssp             HHHHCCC-CEECTT--TCCEESSHHHHHHHHTTC----
T ss_pred             HhcCCCC-CeECCC--CCCccCCHHHHHHHHHhcCCCC
Confidence            9999998 499988  9999999999999999998875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=5e-35  Score=247.47  Aligned_cols=182  Identities=30%  Similarity=0.608  Sum_probs=90.1

Q ss_pred             HHHHHHHHhcCCCCcccCccCCCCCCccccccCCHHHHHHHHhhcCCCCCcccccccccccccCCHHHHHHHHHHcCCCC
Q psy11069        126 NTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPL  205 (391)
Q Consensus       126 ~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~  205 (391)
                      ..|..|++.|.++++|.|++       |++.|.+...|..|++.|.+. ++|.|.  .|++.|.+...|..|++.|.+++
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~-------C~~~f~~~~~l~~H~~~h~~~-~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~   76 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPE-------CGKSFSRSDHLAEHQRTHTGE-KPYKCP--ECGKSFSDKKDLTRHQRTHTGEK   76 (190)
T ss_dssp             -------------------------------CCSSHHHHHGGGCC----CCEECT--TTCCEESSHHHHHHHHHHHHCCC
T ss_pred             ccchhhhhhcCCCCCCcCCC-------CccccCCHHHHHHHHHHcCCC-CCccCC--CcCchhCCHHHHHHHHHhcCCCC
Confidence            45666666666777777776       777777777777777666655 445555  66666666666666666666555


Q ss_pred             ccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhHhccccccCCCCCccccCcccccCCChhHHH
Q psy11069        206 TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLR  285 (391)
Q Consensus       206 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~  285 (391)
                      +|.|..  |++.|.+...|..|++.|++ +                               ++|.|+.|++.|.+...|.
T Consensus        77 ~~~C~~--C~~~f~~~~~l~~H~~~h~~-~-------------------------------~~~~C~~C~~~f~~~~~l~  122 (190)
T 2i13_A           77 PYKCPE--CGKSFSQRANLRAHQRTHTG-E-------------------------------KPYACPECGKSFSQLAHLR  122 (190)
T ss_dssp             CEECTT--TCCEESCHHHHHHHHHHHHT-C-------------------------------CCEECTTTCCEESSHHHHH
T ss_pred             CccCcc--cCCccCCHHHHHHHHHhcCC-C-------------------------------CCCcCCCCCCccCCHHHHH
Confidence            555555  55555555555555555543 3                               4455555555555555555


Q ss_pred             HHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        286 EHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       286 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      .|++ .|.++++|.|+.  |++.|.+...|..|++ .|.++++|.|++  |++.|.+...|..|+++|++++
T Consensus       123 ~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~~-~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~k  188 (190)
T 2i13_A          123 AHQR-THTGEKPYKCPE--CGKSFSREDNLHTHQR-THTGEKPYKCPE--CGKSFSRRDALNVHQRTHTGKK  188 (190)
T ss_dssp             HHHH-HHHCCCCEECTT--TCCEESCHHHHHHHHH-HHHCCCCEECTT--TCCEESSHHHHHHHHTTC----
T ss_pred             HHHH-HhCCCCCeECCC--CCcccCCHHHHHHHHH-hcCCCCCeECCC--CCCccCCHHHHHHHHHhcCCCC
Confidence            5554 555555666654  6666666666666655 355555666655  6666666666666666666555

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=9.6e-31  Score=221.10  Aligned_cols=173  Identities=29%  Similarity=0.572  Sum_probs=84.9

Q ss_pred             CcccccccccccccCCHHHHHHHHHHcCCCCcccc--ccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccch
Q psy11069        175 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCC--EELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLM  252 (391)
Q Consensus       175 ~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~  252 (391)
                      ++|.|.|+.|++.|.+...|..|++.|.++++|.|  ..  |++.|.+...|..|++.|.+ +++|.|..+.|++.|.+.
T Consensus        11 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~   87 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEG--CEKGFTSLHHLTRHSLTHTG-EKNFTCDSDGCDLRFTTK   87 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTT--CCCCCSSHHHHHHHHTTTTT-CCCEECCSSSCCCEESCH
T ss_pred             cceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCC--CChhhCCHHHHHHHHHHccC-CCceeCCCCCCCCccCCH
Confidence            34555444555555555555555555555555555  44  55555555555555555543 445555411255555555


Q ss_pred             hhHhccc-cccCCCCCcccc--CcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCcc
Q psy11069        253 ASLKSHQ-RVHVTNPEDLVC--KGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMF  329 (391)
Q Consensus       253 ~~l~~H~-~~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  329 (391)
                      ..|..|+ +.|..+.++|.|  +.|++.|.+...|..|++ +|.+++||.|+.++|++.|.+...|..|++ .|.+   |
T Consensus        88 ~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~-~H~~---~  162 (190)
T 1tf6_A           88 ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAG---Y  162 (190)
T ss_dssp             HHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHG-GGSSSCSSBCCSSSCCCBCSSHHHHHHHHT-SSCS---C
T ss_pred             HHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHH-HhCCCCCccCCCCCCCchhcCHHHHHHHHH-HhCC---C
Confidence            5555555 333223344555  445555555555555544 455555555532225555555555555554 2443   4


Q ss_pred             CCCCC-CCCcccCChHHHHHHHHHhcC
Q psy11069        330 PCPLV-TCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       330 ~C~~~-~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      .|... .|++.|.+...|..|+++|++
T Consensus       163 ~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          163 PCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             CCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             cCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            44410 045555555555555544443

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=9.3e-31  Score=221.18  Aligned_cols=175  Identities=24%  Similarity=0.538  Sum_probs=154.0

Q ss_pred             CCCCcccc--ccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhhHhccccccCCCCCccccC--ccccc
Q psy11069        202 GKPLTLCC--EELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQ  277 (391)
Q Consensus       202 ~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~  277 (391)
                      ...++|.|  ..  |++.|.+...|..|++.|.+ +++|.|..+.|++.|.+...|..|+++| .++++|.|+  .|++.
T Consensus         8 ~~~~~~~C~~~~--C~~~f~~~~~L~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~   83 (190)
T 1tf6_A            8 VVYKRYICSFAD--CGAAYNKNWKLQAHLCKHTG-EKPFPCKEEGCEKGFTSLHHLTRHSLTH-TGEKNFTCDSDGCDLR   83 (190)
T ss_dssp             --CCCCBCSSTT--TCCBCSSHHHHHHHHHHHHC-CCSSCCSSTTCCCCCSSHHHHHHHHTTT-TTCCCEECCSSSCCCE
T ss_pred             CCCcceeCCCCC--CcchhCCHHHHHHHHHhcCC-CCCccCCCCCCChhhCCHHHHHHHHHHc-cCCCceeCCCCCCCCc
Confidence            35678999  56  99999999999999999986 8899993224999999999999999999 566899999  89999


Q ss_pred             CCChhHHHHHHHHhc-CCCCcccc--ccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        278 FKVPCRLREHYKAVH-ESTKNFKC--THDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       278 f~~~~~l~~H~~~~H-~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      |.+...|..|++..| .+.++|.|  ..  |++.|.+...|..|++ .|.++++|.|++.+|++.|.+...|..|+++|+
T Consensus        84 f~~~~~l~~H~~~~h~~~~~~~~C~~~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~  160 (190)
T 1tf6_A           84 FTTKANMKKHFNRFHNIKICVYVCHFEN--CGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA  160 (190)
T ss_dssp             ESCHHHHHHHHHTTSSTTTSCCEECSSS--SCEECSSHHHHHHHHG-GGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSC
T ss_pred             cCCHHHHHHHHHHhcCCCcceeeCCCCC--CccccCCHHHHHHHHH-HhCCCCCccCCCCCCCchhcCHHHHHHHHHHhC
Confidence            999999999996688 57889999  77  9999999999999999 599999999974459999999999999999998


Q ss_pred             CCCCceeccCcC-cccccccchhHHHHHHhhcCC
Q psy11069        355 ENKPKFTCPYQD-CLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       355 ~~~~~~~C~~~~-C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      +    |.|+... |++.|.+...|..|+++||++
T Consensus       161 ~----~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          161 G----YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             S----CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             C----CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            8    6674311 999999999999999999975

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=1.2e-26  Score=189.32  Aligned_cols=138  Identities=29%  Similarity=0.551  Sum_probs=108.1

Q ss_pred             CCccccchhhHhcccc---ccCCCCCccc-----cCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHH
Q psy11069        245 CGKSFYLMASLKSHQR---VHVTNPEDLV-----CKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALK  316 (391)
Q Consensus       245 C~~~f~~~~~l~~H~~---~h~~~~~~~~-----C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~  316 (391)
                      |++.|.+...|..|++   +| .+.++|.     |..|++.|.+...|..|++ .|.++++|.|..+.|++.|.+...|.
T Consensus         9 C~~~f~~~~~L~~H~~~~h~h-~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~   86 (155)
T 2gli_A            9 CSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLK   86 (155)
T ss_dssp             CCCBCSCHHHHHHHHHHHTSS-SCSSCCCCCBTTCTTTTCCCSSHHHHHHHTH-HHHCCCCCCCCSTTCCCCCSSHHHHH
T ss_pred             CccccCCHHHHHHHHHhhccC-CCCcceeCCCCCccchhhhhhhHHHHHHHHH-hcCCCCCccCCCCCCCCcccCHHHHH
Confidence            4444444444444444   22 3334444     4455699999999999987 88889999996335999999999999


Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHH-HHhcCCCCceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM-LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~-~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      .|++ .|.++++|.|++.+|++.|.+...|..|+ ++|++++ +|.|+..+|++.|.+...|..|+++|||
T Consensus        87 ~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~-~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           87 THLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK-PYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             HHHH-HTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCC-CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHH-HcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCC-CeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            9998 58899999998545999999999999998 7888888 4999654599999999999999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=1.8e-26  Score=188.15  Aligned_cols=148  Identities=26%  Similarity=0.517  Sum_probs=102.3

Q ss_pred             cccccccccccCCHHHHHHHHH---HcCCCCccccccccccccccCchHHHHHHhHhcCCCCCeeccCCCCCccccchhh
Q psy11069        178 PCDQKNCNKRFTTLSNLKMHMV---RHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMAS  254 (391)
Q Consensus       178 ~c~c~~C~~~f~~~~~l~~H~~---~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~  254 (391)
                      .|.|+.|++.|.+...|..|++   .|.++++|.|.+  |+                        |.  .|++.|.+...
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~--c~------------------------C~--~c~~~f~~~~~   54 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHW--GG------------------------CS--RELRPFKAQYM   54 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCB--TT------------------------CT--TTTCCCSSHHH
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCC--CC------------------------cc--chhhhhhhHHH
Confidence            4444466666666666666665   345555555554  31                        22  25577777777


Q ss_pred             HhccccccCCCCCccccCc--ccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCC
Q psy11069        255 LKSHQRVHVTNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCP  332 (391)
Q Consensus       255 l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  332 (391)
                      |..|+++| .++++|.|++  |++.|.+...|..|++ .|.++++|.|+.++|++.|.+...|..|++..|.++++|.|+
T Consensus        55 l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  132 (155)
T 2gli_A           55 LVVHMRRH-TGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK  132 (155)
T ss_dssp             HHHHTHHH-HCCCCCCCCSTTCCCCCSSHHHHHHHHH-HTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECC
T ss_pred             HHHHHHhc-CCCCCccCCCCCCCCcccCHHHHHHHHH-HcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            77777777 4456777874  8888888888888876 677778888864348888888888888873368888888886


Q ss_pred             CCCCCcccCChHHHHHHHHHhcC
Q psy11069        333 LVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       333 ~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      +++|++.|.+...|..|+++|+|
T Consensus       133 ~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          133 LPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             STTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCccccCCHHHHHHHHHhhcC
Confidence            44588888888888888888765

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=7.1e-24  Score=165.86  Aligned_cols=118  Identities=25%  Similarity=0.577  Sum_probs=109.1

Q ss_pred             CCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhcc--CCCCCccCCCCCCCCcccC
Q psy11069        264 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSK--HLNMRMFPCPLVTCGKSFL  341 (391)
Q Consensus       264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~--H~~~~~~~C~~~~C~~~f~  341 (391)
                      .+.++|.|++|++.|.+...|..|++ .|.++++|.|..  |++.|.+...|..|++.+  |.++++|.|++  |++.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C~~~f~   77 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPK--CGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFR   77 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHH-HHSSCCSCBCTT--TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS--SCCEES
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHH-hCCCCCCeECCC--CCchhcCHHHHHHHHhhhhcCCCCCCeECCC--CCCccC
Confidence            35678999999999999999999988 899999999988  999999999999999853  57889999998  999999


Q ss_pred             ChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCCC
Q psy11069        342 RSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       342 ~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      +...|..|+++|++++ +|.|+.  |++.|.+...|..|++.+|++..
T Consensus        78 ~~~~l~~H~~~h~~~~-~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           78 RRMELRLHMVSHTGEM-PYKCSS--CSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             SHHHHHHHHHHHSSSC-SEECSS--SCCEESSHHHHHHHHHHTSSCSS
T ss_pred             CHHHHHHHHHHcCCCC-CccCCC--ccchhCCHHHHHHHHHHHCCCCC
Confidence            9999999999999999 499999  99999999999999998887653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=1.8e-23  Score=162.34  Aligned_cols=114  Identities=30%  Similarity=0.677  Sum_probs=104.8

Q ss_pred             CCCCccccCc--ccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccC
Q psy11069        264 TNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFL  341 (391)
Q Consensus       264 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~  341 (391)
                      .++++|.|.+  |++.|.+...|..|++ .|.++++|.|++..|++.|.+...|..|++ .|.++++|.|.+  |++.|.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~   77 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKT--CQRKFS   77 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHH-HHHCCCCEECTT--TCCEES
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHH-hhCCCCCccCCCCCCcCccCCHHHHHHHHH-HcCCCCCccCCc--cCchhC
Confidence            4568999997  9999999999999988 899999999982249999999999999999 599999999998  999999


Q ss_pred             ChHHHHHHHHHhcCCCCceec--cCcCcccccccchhHHHHHHhh
Q psy11069        342 RSEHLQEHMLQHNENKPKFTC--PYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       342 ~~~~L~~H~~~h~~~~~~~~C--~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      +...|..|+++|+++++ |.|  +.  |++.|.+...|..|+++|
T Consensus        78 ~~~~l~~H~~~h~~~~~-~~C~~~~--C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           78 RSDHLKTHTRTHTGEKP-FSCRWPS--CQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CHHHHHHHHHHHHTCCC-EECCSTT--CCCEESSHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhcCCCC-eeCCCCC--CccccCCHHHHHHHHhcC
Confidence            99999999999999994 999  78  999999999999999876

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=2.7e-23  Score=162.60  Aligned_cols=118  Identities=27%  Similarity=0.635  Sum_probs=93.4

Q ss_pred             CCccccC--cccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCCh
Q psy11069        266 PEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRS  343 (391)
Q Consensus       266 ~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~  343 (391)
                      +++|.|+  .|++.|.+...|..|++ .| ++++|.|..  |++.|.+...|..|++ .|.++++|.|.+.+|++.|.+.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h-~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~   77 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLH-TH-GPRVHVCAE--CGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLD   77 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHG-GG-SCCCEECTT--TCCEESSHHHHHHHGG-GTSCCCCEECCSTTCCCEESCH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHH-Hc-CCCCeECCC--CCchhCCHHHHHHHHH-HcCCCCCeeCCCCCCcCccCCH
Confidence            4678888  78888888888888877 77 778888877  8888888888888888 5888888888744588888888


Q ss_pred             HHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCCC
Q psy11069        344 EHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       344 ~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      ..|..|+++|++++ +|.|++.+|++.|.+...|..|+++|++++.
T Consensus        78 ~~l~~H~~~h~~~~-~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C           78 FNLRTHVRIHTGDR-PYVCPFDGCNKKFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             HHHHHHHHHHHCCC-CCCCCSTTCCCCCSSTTTTHHHHHHHC----
T ss_pred             HHHHHHHHHhCCCC-ceECCCCCCCCccCCHHHHHHHHHHHccccc
Confidence            88888888888888 4888522388888888888888888887653

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=4.7e-23  Score=161.18  Aligned_cols=120  Identities=35%  Similarity=0.678  Sum_probs=105.1

Q ss_pred             CCCeeccCCCCCccccchhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHH
Q psy11069        235 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSA  314 (391)
Q Consensus       235 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  314 (391)
                      +++|.|+++.|++.|.+...|..|+++|  +.++|.|+.|++.|.+...|..|++ .|.++++|.|..+.|++.|.+...
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~   79 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFN   79 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG--SCCCEECTTTCCEESSHHHHHHHGG-GTSCCCCEECCSTTCCCEESCHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc--CCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCeeCCCCCCcCccCCHHH
Confidence            5789998555999999999999999998  5689999999999999999999988 899999999974459999999999


Q ss_pred             HHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCC
Q psy11069        315 LKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKP  358 (391)
Q Consensus       315 l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~  358 (391)
                      |..|++ .|.++++|.|++..|++.|.+...|..|+++|+++++
T Consensus        80 l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C           80 LRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             HHHHHH-HHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC----
T ss_pred             HHHHHH-HhCCCCceECCCCCCCCccCCHHHHHHHHHHHccccc
Confidence            999999 5999999999633499999999999999999999884

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=1.2e-23  Score=165.61  Aligned_cols=112  Identities=20%  Similarity=0.468  Sum_probs=100.5

Q ss_pred             hccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCC
Q psy11069        256 KSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVT  335 (391)
Q Consensus       256 ~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~  335 (391)
                      ..|..+| .|+++|.|++|++.|.....|..|++ +|++++||+|..  |++.|.+...|..|++ .|++++||.|++  
T Consensus        11 ~h~~~~h-~Gek~y~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~--   83 (133)
T 2lt7_A           11 DHYELIV-DGRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRY--CEKVFPLAEYRTKHEI-HHTGERRYQCLA--   83 (133)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEESCHHHHHHHHH-HHHCCSCEECSS--SSCEESSHHHHHHHHH-HHHTCCCEEESS--
T ss_pred             hhceeec-CCCcCeECCCCCCCcCCHHHHHHHHH-HcCCCCCeeCCc--cCeecccccchhhhcc-ccCCCccccCCC--
Confidence            3444555 77899999999999999999999988 899999999988  9999999999999999 599999999998  


Q ss_pred             CCcccCChHHHHHHHHHhcCCCC-----ceeccCcCcccccccchh
Q psy11069        336 CGKSFLRSEHLQEHMLQHNENKP-----KFTCPYQDCLMSYVAKSS  376 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h~~~~~-----~~~C~~~~C~~~f~~~~~  376 (391)
                      |++.|.+...|..|+++|++++|     +|+|..  |++.|.....
T Consensus        84 C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~--C~k~~~~~~~  127 (133)
T 2lt7_A           84 CGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHP--CRSLQIRQYA  127 (133)
T ss_dssp             SCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECC--CCSSCCCCCH
T ss_pred             CCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCC--CCchhhhccc
Confidence            99999999999999999988753     599999  9999876543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=9.9e-23  Score=165.90  Aligned_cols=123  Identities=27%  Similarity=0.503  Sum_probs=80.3

Q ss_pred             CCeeccCCCCCccccchhhHhccccccCCCCCc--------cccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCc
Q psy11069        236 APYMCDYKGCGKSFYLMASLKSHQRVHVTNPED--------LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKL  307 (391)
Q Consensus       236 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~  307 (391)
                      .+|.|..  |++.|.+...|..|++.++.+..+        |.|++|++.|.+...|..|++ .|.++++|.|..+.|++
T Consensus        24 ~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~  100 (155)
T 2rpc_A           24 LSRPKKS--CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGK  100 (155)
T ss_dssp             CSSSCCC--CCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTH-HHHCCCSEECSCTTTCC
T ss_pred             ccccccc--CCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHH-hcCCCCcccCCcCCCCC
Confidence            3455543  555555555555555542233222        677777777777777777766 67777777775334777


Q ss_pred             cccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        308 LFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       308 ~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      .|.+...|..|++ .|.++++|.|.+.+|++.|.+...|.+|+++|++++| |.|.
T Consensus       101 ~f~~~~~L~~H~~-~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~~c~  154 (155)
T 2rpc_A          101 IFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS-GPSS  154 (155)
T ss_dssp             EESCHHHHHHHHT-TTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCC-SCSC
T ss_pred             ccCCHHHHHHHHH-hhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCC-CCCC
Confidence            7777777777777 4777777777643477777777777777777777773 7664

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=4e-22  Score=162.27  Aligned_cols=122  Identities=27%  Similarity=0.456  Sum_probs=110.3

Q ss_pred             CCCCccccCcccccCCChhHHHHHHHHhcCCCCc--------cccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCC
Q psy11069        264 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKN--------FKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVT  335 (391)
Q Consensus       264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~--------~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~  335 (391)
                      ....+|.|..|++.|.+...|..|++..|.+..+        |.|..  |++.|.+...|..|++ .|.++++|.|.+.+
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~   97 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR--EGKSFKAKYKLVNHIR-VHTGEKPFPCPFPG   97 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTT--SSCCCSSHHHHHHHTH-HHHCCCSEECSCTT
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCC--cccccCCHHHHHHHHH-hcCCCCcccCCcCC
Confidence            3457899999999999999999999855887765        89988  9999999999999999 59999999998556


Q ss_pred             CCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCCC
Q psy11069        336 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      |++.|.+...|..|+++|++++ +|.|++.+|++.|.+...|.+|+++|++++.
T Consensus        98 C~~~f~~~~~L~~H~~~h~~~~-~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A           98 CGKIFARSENLKIHKRTHTGEK-PFKCEFEGCDRRFANSSDRKKHMHVHTSDKS  150 (155)
T ss_dssp             TCCEESCHHHHHHHHTTTCSSC-SBCCSSTTCCCCBSSHHHHHHSSTTTTSCCC
T ss_pred             CCCccCCHHHHHHHHHhhCCCC-CccCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999 4999844599999999999999999998764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.85  E-value=1.4e-21  Score=151.57  Aligned_cols=113  Identities=27%  Similarity=0.578  Sum_probs=91.8

Q ss_pred             CCCceecCCCCCCCcccChHHHHHHHHhcCCCCcccCc--cCCCCCCccccccCCHHHHHHHHhhcCCCCCccccccccc
Q psy11069        107 KQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCK--LTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNC  184 (391)
Q Consensus       107 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C  184 (391)
                      ++++|.|++..|++.|.+...|..|++.|.++++|.|+  .       |++.|.+...|..|++.|++. ++|.|.  .|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~-------C~~~f~~~~~l~~H~~~h~~~-~~~~C~--~C   72 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD-------CERRFSRSDQLKRHQRRHTGV-KPFQCK--TC   72 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTT-------CCCEESSHHHHHHHHHHHHCC-CCEECT--TT
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCC-------CcCccCCHHHHHHHHHHcCCC-CCccCC--cc
Confidence            45778887556888888888888888888888888887  6       888888888888888888776 566666  88


Q ss_pred             ccccCCHHHHHHHHHHcCCCCcccc--ccccccccccCchHHHHHHhHh
Q psy11069        185 NKRFTTLSNLKMHMVRHGKPLTLCC--EELGCGRKFQTMKQYSTHLKEH  231 (391)
Q Consensus       185 ~~~f~~~~~l~~H~~~h~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h  231 (391)
                      ++.|.+...|..|+++|+++++|.|  +.  |++.|.+...|..|+++|
T Consensus        73 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPS--CQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCEESCHHHHHHHHHHHHTCCCEECCSTT--CCCEESSHHHHHHHHHTC
T ss_pred             CchhCCHHHHHHHHHHhcCCCCeeCCCCC--CccccCCHHHHHHHHhcC
Confidence            8888888888888888888888888  56  888888888888887764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=1.3e-20  Score=147.22  Aligned_cols=115  Identities=26%  Similarity=0.568  Sum_probs=99.6

Q ss_pred             CCCCceecCCCCCCCcccChHHHHHHHHhcCCCCcccCccCCCCCCccccccCCHHHHHHHHhhcC--CCCCcccccccc
Q psy11069        106 KKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHD--EDKKCYPCDQKN  183 (391)
Q Consensus       106 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~--~~~~~~~c~c~~  183 (391)
                      .++++|.|++  |++.|.+...|..|++.|.++++|.|++       |++.|.+...|..|++.++  ...++|.|.  .
T Consensus         3 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~-------C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~--~   71 (124)
T 2dlq_A            3 SGSSGVECPT--CHKKFLSKYYLKVHNRKHTGEKPFECPK-------CGKCYFRKENLLEHEARNCMNRSEQVFTCS--V   71 (124)
T ss_dssp             CCCSSCCCTT--TCCCCSSHHHHHHHHHHHSSCCSCBCTT-------TCCBCSSHHHHHHHHHHCCCCSCCCCEECS--S
T ss_pred             CCCCCCCCCC--CCCcCCCHHHHHHHHHhCCCCCCeECCC-------CCchhcCHHHHHHHHhhhhcCCCCCCeECC--C
Confidence            3467899996  9999999999999999999999999999       9999999999999998642  223566666  8


Q ss_pred             cccccCCHHHHHHHHHHcCCCCccccccccccccccCchHHHHHHhHhcC
Q psy11069        184 CNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSN  233 (391)
Q Consensus       184 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  233 (391)
                      |++.|.+...|..|+++|+++++|.|..  |++.|.+...|..|++..++
T Consensus        72 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           72 CQETFRRRMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             SCCEESSHHHHHHHHHHHSSSCSEECSS--SCCEESSHHHHHHHHHHTSS
T ss_pred             CCCccCCHHHHHHHHHHcCCCCCccCCC--ccchhCCHHHHHHHHHHHCC
Confidence            9999999999999999999999999999  99999999999999986554

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.83  E-value=1.3e-21  Score=153.96  Aligned_cols=95  Identities=26%  Similarity=0.566  Sum_probs=88.7

Q ss_pred             HHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcC
Q psy11069        287 HYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQD  366 (391)
Q Consensus       287 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~  366 (391)
                      |...+|.|+++|+|..  |++.|.+...|..|++ .|+++++|.|++  |++.|.+...|..|+++|++++| |.|+.  
T Consensus        12 h~~~~h~Gek~y~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~--   83 (133)
T 2lt7_A           12 HYELIVDGRVYYICIV--CKRSYVCLTSLRRHFN-IHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERR-YQCLA--   83 (133)
T ss_dssp             EEEEEETTEEEEEETT--TCCEESCHHHHHHHHH-HHHCCSCEECSS--SSCEESSHHHHHHHHHHHHTCCC-EEESS--
T ss_pred             hceeecCCCcCeECCC--CCCCcCCHHHHHHHHH-HcCCCCCeeCCc--cCeecccccchhhhccccCCCcc-ccCCC--
Confidence            3345899999999988  9999999999999999 599999999998  99999999999999999999995 99999  


Q ss_pred             cccccccchhHHHHHHhhcCCCC
Q psy11069        367 CLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       367 C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      |++.|.++..|..|+++||+++.
T Consensus        84 C~k~F~~~~~L~~H~~~hh~~~p  106 (133)
T 2lt7_A           84 CGKSFINYQFMSSHIKSVHSQDP  106 (133)
T ss_dssp             SCCEESSHHHHHHHHHHHTCCCT
T ss_pred             CCCCcCCHHHHHHHhHHhcCCCC
Confidence            99999999999999999998753

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.76  E-value=5.8e-19  Score=129.41  Aligned_cols=88  Identities=27%  Similarity=0.578  Sum_probs=67.3

Q ss_pred             CCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccc
Q psy11069        295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAK  374 (391)
Q Consensus       295 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~  374 (391)
                      ++||.|+++.|++.|.+...|..|++ .|.++++|.|.+  |++.|.+...|..|+++|++++ +|.|+.  |++.|.+.
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~~C~~--C~~~f~~~   75 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEK-PFACDI--CGRKFARS   75 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHH-HHHCCCCEECTT--TCCEESCHHHHHHHHHHHHCCC-CEECTT--TCCEESSH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHH-HhCCCCCccCCC--CCcccCCHHHHHHHHHHcCCCC-CccCCC--CCchhCCH
Confidence            56788863248888888888888887 477778888887  8888888888888888888877 488877  88888888


Q ss_pred             hhHHHHHHhhcCCC
Q psy11069        375 SSLYAHLKHVHSTN  388 (391)
Q Consensus       375 ~~L~~H~~~~H~~~  388 (391)
                      ..|..|+++|++++
T Consensus        76 ~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           76 DERKRHTKIHLRQK   89 (90)
T ss_dssp             HHHHHHHGGGGC--
T ss_pred             HHHHHHHHHhcccC
Confidence            88888888887764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.7e-18  Score=128.64  Aligned_cols=88  Identities=27%  Similarity=0.517  Sum_probs=55.5

Q ss_pred             CCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccc
Q psy11069        293 ESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYV  372 (391)
Q Consensus       293 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~  372 (391)
                      .++++|.|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+...|..|+++|++++ +|.|+.  |++.|.
T Consensus         4 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~~C~~--C~~~f~   75 (96)
T 2dmd_A            4 GSSGPHKCEV--CGKCFSRKDKLKTHMR-CHTGVKPYKCKT--CDYAAADSSSLNKHLRIHSDER-PFKCQI--CPYASR   75 (96)
T ss_dssp             CCCCCCCBTT--TTBCCCCHHHHHHHGG-GCCCCCSEECSS--SCCEESSHHHHHHHHHHSCCCC-CEECSS--SSCEES
T ss_pred             CCCcCeECCC--CCCccCCHHHHHHHHH-hcCCCCCEeCCC--CCCccCCHHHHHHHHHHhCCCC-CccCCC--CCCccC
Confidence            4555666655  6666666666666666 366666666665  6666666666666666666666 366666  666666


Q ss_pred             cchhHHHHHHhhcCCC
Q psy11069        373 AKSSLYAHLKHVHSTN  388 (391)
Q Consensus       373 ~~~~L~~H~~~~H~~~  388 (391)
                      +...|..|++.|+++.
T Consensus        76 ~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           76 NSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             SHHHHHHHHTTCCSCC
T ss_pred             CHHHHHHHHHHhcCCC
Confidence            6666666666666554

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.76  E-value=2.9e-18  Score=129.84  Aligned_cols=92  Identities=27%  Similarity=0.570  Sum_probs=83.5

Q ss_pred             CCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCCh
Q psy11069        264 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRS  343 (391)
Q Consensus       264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~  343 (391)
                      ..+++|.|.+|++.|.....|..|++ .|.++++|.|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+.
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~   86 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDI--CHKAFRRQDHLRDHRY-IHSKEKPFKCQE--CGKGFCQS   86 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHH-HHCCSCCCBCSS--SCCBCSCHHHHHHHGG-GSCCCCTTSCSS--SCCCCSSH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHH-HcCCCCCcCCCC--ccchhCCHHHHHHHHH-HhCCCCCeECCC--cCCcccCH
Confidence            45678999999999999999999987 899999999988  9999999999999998 599999999998  99999999


Q ss_pred             HHHHHHHHHhcCCCCceec
Q psy11069        344 EHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       344 ~~L~~H~~~h~~~~~~~~C  362 (391)
                      ..|..|+++|+++++ |.+
T Consensus        87 ~~L~~H~~~H~~~~~-~~~  104 (106)
T 2ee8_A           87 RTLAVHKTLHMQTSS-PTA  104 (106)
T ss_dssp             HHHHHHHHHTTSCCC-CCC
T ss_pred             HHHHHHHHHhCCCCC-CcC
Confidence            999999999999985 654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.9e-18  Score=128.36  Aligned_cols=89  Identities=27%  Similarity=0.545  Sum_probs=82.4

Q ss_pred             CCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCCh
Q psy11069        264 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRS  343 (391)
Q Consensus       264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~  343 (391)
                      +++++|.|.+|++.|.+...|..|++ .|.++++|.|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+.
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~   77 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKT--CDYAAADSSSLNKHLR-IHSDERPFKCQI--CPYASRNS   77 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGG-GCCCCCSEECSS--SCCEESSHHHHHHHHH-HSCCCCCEECSS--SSCEESSH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHH-hcCCCCCEeCCC--CCCccCCHHHHHHHHH-HhCCCCCccCCC--CCCccCCH
Confidence            45688999999999999999999988 899999999988  9999999999999999 599999999998  99999999


Q ss_pred             HHHHHHHHHhcCCCC
Q psy11069        344 EHLQEHMLQHNENKP  358 (391)
Q Consensus       344 ~~L~~H~~~h~~~~~  358 (391)
                      ..|..|+++|+++++
T Consensus        78 ~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           78 SQLTVHLRSHTGDSG   92 (96)
T ss_dssp             HHHHHHHTTCCSCCC
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999999999875

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=1e-18  Score=134.48  Aligned_cols=105  Identities=21%  Similarity=0.337  Sum_probs=83.0

Q ss_pred             chhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHh--cCCCCccc-cccCCcCccc--cCHHHHHHhhhccCCC
Q psy11069        251 LMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAV--HESTKNFK-CTHDGCKLLF--SSKSALKRHNKSKHLN  325 (391)
Q Consensus       251 ~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~--H~~~~~~~-C~~~~C~~~f--~~~~~l~~H~~~~H~~  325 (391)
                      +...|..|+++| .++++|.|++|++.|.....|..|++ .  |.+.+++. |..  |++.|  .....|..|++ .|.+
T Consensus         3 s~~~l~~H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~h~~~~~~~~C~~--C~~~f~f~~~~~l~~H~~-~H~~   77 (115)
T 2dmi_A            3 SGSSGKLYGSIF-TGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNN--NPKRWSKPRKRSLLEMEG-KEDA   77 (115)
T ss_dssp             CCCCCCCCCCCC-CCCCSEEBSSSSCEESSHHHHHHHHH-HTCCCBCSCCCCCCC--CCSCCSSCCCCCCCCCCC-SCCC
T ss_pred             cchhhhhheeee-CCCCCEECCccCchhcCHHHHHHHHH-HhCccccCCCccCCC--CCcccccccHHHHHHHhh-ccCC
Confidence            345688888888 56688999999999999999999987 6  66666544 877  88888  88888888888 5888


Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      +++|.|.+  |++.|.+...|..|+++|+.... ..++
T Consensus        78 ~~~~~C~~--C~k~f~~~~~L~~H~~~hh~~~~-~~~~  112 (115)
T 2dmi_A           78 QKVLKCMY--CGHSFESLQDLSVHMIKTKHYQK-VSGP  112 (115)
T ss_dssp             CSSCBCSS--SCCBCSSHHHHHHHHHHTTTTTC-SCCC
T ss_pred             CcceECCC--CCCccCCHHHHHHHHHHhCCccc-CCCC
Confidence            88888887  88888888888888888877653 4443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=9.2e-20  Score=140.35  Aligned_cols=104  Identities=17%  Similarity=0.267  Sum_probs=91.5

Q ss_pred             ChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhc-cCCCCCcc-CCCCCCCCccc--CChHHHHHHHHHhcC
Q psy11069        280 VPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKS-KHLNMRMF-PCPLVTCGKSF--LRSEHLQEHMLQHNE  355 (391)
Q Consensus       280 ~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-~H~~~~~~-~C~~~~C~~~f--~~~~~L~~H~~~h~~  355 (391)
                      +...|..|++ +|.+++||.|..  |++.|.+...|..|++. .|.+.+++ .|.+  |++.|  .....|..|+++|++
T Consensus         3 s~~~l~~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~--C~~~f~f~~~~~l~~H~~~H~~   77 (115)
T 2dmi_A            3 SGSSGKLYGS-IFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNN--NPKRWSKPRKRSLLEMEGKEDA   77 (115)
T ss_dssp             CCCCCCCCCC-CCCCCCSEEBSS--SSCEESSHHHHHHHHHHTCCCBCSCCCCCCC--CCSCCSSCCCCCCCCCCCSCCC
T ss_pred             cchhhhhhee-eeCCCCCEECCc--cCchhcCHHHHHHHHHHhCccccCCCccCCC--CCcccccccHHHHHHHhhccCC
Confidence            3456778987 899999999988  99999999999999994 05556655 5998  99999  999999999999999


Q ss_pred             CCCceeccCcCcccccccchhHHHHHHhhcCCCCCC
Q psy11069        356 NKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNKIT  391 (391)
Q Consensus       356 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~  391 (391)
                      ++ +|.|+.  |++.|.+...|..|++.||...+++
T Consensus        78 ~~-~~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           78 QK-VLKCMY--CGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             CS-SCBCSS--SCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             Cc-ceECCC--CCCccCCHHHHHHHHHHhCCcccCC
Confidence            99 499999  9999999999999999999887763

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.73  E-value=3.5e-18  Score=122.81  Aligned_cols=82  Identities=28%  Similarity=0.611  Sum_probs=60.6

Q ss_pred             ccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchh
Q psy11069        297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSS  376 (391)
Q Consensus       297 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~  376 (391)
                      ||.|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+...|..|+++|++++ +|.|+.  |++.|.+...
T Consensus         1 ~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~~C~~--C~~~f~~~~~   72 (82)
T 2kmk_A            1 SFDCKI--CGKSFKRSSTLSTHLL-IHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEK-PHKCQV--CGKAFSQSSN   72 (82)
T ss_dssp             CEECSS--SCCEESSHHHHHHHHH-HHHTCCCEECSS--SCCEESSHHHHHHHHHHHHTCC-CEECTT--TSCEESSHHH
T ss_pred             CccCCC--CcccccCchhHHHHHH-HcCCCCCeeCCc--CChhhCCHHHHHHHHHHhcCCC-CCcCCC--cchhhCChHH
Confidence            467766  7777777777777777 367777777776  7777777777777777777777 377777  7777777777


Q ss_pred             HHHHHHhhcC
Q psy11069        377 LYAHLKHVHS  386 (391)
Q Consensus       377 L~~H~~~~H~  386 (391)
                      |..|+++|+|
T Consensus        73 l~~H~~~H~g   82 (82)
T 2kmk_A           73 LITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHhhCC
Confidence            7777777764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.72  E-value=3.8e-18  Score=122.63  Aligned_cols=82  Identities=34%  Similarity=0.663  Sum_probs=76.1

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHH
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQ  347 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~  347 (391)
                      ||.|++|++.|.+...|..|++ .|.++++|.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.+...|.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~   74 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQY--CGKRFHQKSDMKKHTF-IHTGEKPHKCQV--CGKAFSQSSNLI   74 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH-HHHTCCCEECSS--SCCEESSHHHHHHHHH-HHHTCCCEECTT--TSCEESSHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHH-HcCCCCCeeCCc--CChhhCCHHHHHHHHH-HhcCCCCCcCCC--cchhhCChHHHH
Confidence            5889999999999999999988 799999999988  9999999999999999 589999999998  999999999999


Q ss_pred             HHHHHhcC
Q psy11069        348 EHMLQHNE  355 (391)
Q Consensus       348 ~H~~~h~~  355 (391)
                      .|+++|+|
T Consensus        75 ~H~~~H~g   82 (82)
T 2kmk_A           75 THSRKHTG   82 (82)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHhhCC
Confidence            99999975

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.72  E-value=4.3e-18  Score=124.72  Aligned_cols=86  Identities=29%  Similarity=0.639  Sum_probs=76.6

Q ss_pred             CCccccC--cccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCCh
Q psy11069        266 PEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRS  343 (391)
Q Consensus       266 ~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~  343 (391)
                      +++|.|+  .|++.|.....|..|++ .|.++++|.|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+.
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~   75 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRI--CMRNFSRSDHLTTHIR-THTGEKPFACDI--CGRKFARS   75 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHH-HHHCCCCEECTT--TCCEESCHHHHHHHHH-HHHCCCCEECTT--TCCEESSH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHH-HhCCCCCccCCC--CCcccCCHHHHHHHHH-HcCCCCCccCCC--CCchhCCH
Confidence            4689998  59999999999999987 898999999987  9999999999999998 588999999998  99999999


Q ss_pred             HHHHHHHHHhcCCC
Q psy11069        344 EHLQEHMLQHNENK  357 (391)
Q Consensus       344 ~~L~~H~~~h~~~~  357 (391)
                      ..|..|+++|++++
T Consensus        76 ~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           76 DERKRHTKIHLRQK   89 (90)
T ss_dssp             HHHHHHHGGGGC--
T ss_pred             HHHHHHHHHhcccC
Confidence            99999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.3e-17  Score=123.45  Aligned_cols=87  Identities=28%  Similarity=0.630  Sum_probs=59.2

Q ss_pred             CCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC--CCceeccCcCcccc
Q psy11069        293 ESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN--KPKFTCPYQDCLMS  370 (391)
Q Consensus       293 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~--~~~~~C~~~~C~~~  370 (391)
                      +++++|.|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+...|..|+++|+++  + +|.|+.  |++.
T Consensus         3 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~-~~~C~~--C~~~   74 (95)
T 2yt9_A            3 SGSSGVACEI--CGKIFRDVYHLNRHKL-SHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGK-PYICQS--CGKG   74 (95)
T ss_dssp             CCCSCEECSS--SCCEESSSHHHHHHHH-HSCSSCSEECSS--SCCEESCHHHHHHHHHHHCCCCCS-SBCCSS--SCCC
T ss_pred             CCCCCeECCC--CCCccCChHHHHHHHH-hcCCCCCCcCCC--CCCccCCHHHHHHHHHHhcCCCCC-ceECCC--ccch
Confidence            3556677765  7777777777777776 366667777776  777777777777777777665  4 477766  7777


Q ss_pred             cccchhHHHHHHhhcCC
Q psy11069        371 YVAKSSLYAHLKHVHST  387 (391)
Q Consensus       371 f~~~~~L~~H~~~~H~~  387 (391)
                      |.+...|..|++..|++
T Consensus        75 f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           75 FSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             BSSHHHHHHHHHHTSCC
T ss_pred             hCCHHHHHHHHHHhcCC
Confidence            77777777777655543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=7.7e-18  Score=127.70  Aligned_cols=96  Identities=21%  Similarity=0.338  Sum_probs=78.4

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCC
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTC  336 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C  336 (391)
                      .++++| .++++|.|.+|++.|.....|..|++ .|  .++|.|..  |++.|.+...|..|++  |.++++|.|.+  |
T Consensus         6 s~~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~-~H--~~~~~C~~--C~~~f~~~~~l~~H~~--H~~~~~~~C~~--C   75 (107)
T 1wjp_A            6 SGASPV-ENKEVYQCRLCNAKLSSLLEQGSHER-LC--RNAAVCPY--CSLRFFSPELKQEHES--KCEYKKLTCLE--C   75 (107)
T ss_dssp             CCCCCC-CCCCCCBCTTTCCBCSSHHHHHHHHH-HH--HHSBCCTT--TCCCBSSHHHHHHHHH--HCSTGGGEEGG--G
T ss_pred             ccCccc-CCCcCeECCCCCCccCCHHHHHHHHH-HC--CCCccCCC--CCCccCCHHHHHHHHH--cCCCCCccCcc--c
Confidence            355666 56678899999999999999999987 67  36888977  9999999888999883  88888899987  9


Q ss_pred             CcccCChHHHHHHHH-HhcCCCCceecc
Q psy11069        337 GKSFLRSEHLQEHML-QHNENKPKFTCP  363 (391)
Q Consensus       337 ~~~f~~~~~L~~H~~-~h~~~~~~~~C~  363 (391)
                      ++.|.+...|..|++ .|.+++ +|.|.
T Consensus        76 ~~~f~~~~~L~~H~~~~H~~~~-~~~~~  102 (107)
T 1wjp_A           76 MRTFKSSFSIWRHQVEVHNQNN-MAPTS  102 (107)
T ss_dssp             TEECSSHHHHHHHHHHTSCCCC-CCCCC
T ss_pred             cchhCCHHHHHHHHHHHcCCCC-CCCCC
Confidence            999999999999987 777777 48775

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1e-17  Score=127.74  Aligned_cols=85  Identities=31%  Similarity=0.616  Sum_probs=45.1

Q ss_pred             cCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCccccc
Q psy11069        292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSY  371 (391)
Q Consensus       292 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f  371 (391)
                      |+++++|.| .  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+...|..|+++|++++ +|.|+.  |++.|
T Consensus         5 h~~~k~~~C-~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~~C~~--C~~~f   75 (110)
T 2csh_A            5 SSGDKLYPC-Q--CGKSFTHKSQRDRHMS-MHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIK-PYECNI--CAKRF   75 (110)
T ss_dssp             CCCCCCEEC-T--TSCEESSHHHHHHHHH-HHSCCCSEECTT--TSCEESSSHHHHHHHTTTCCCC-CEECSS--SCCEE
T ss_pred             CCCCCCEec-c--CCCccCCHHHHHHHHH-HcCCCcCccCCC--CCcccCCHHHHHHHHHHcCCCC-CeeCCC--Ccchh
Confidence            445555555 4  5555555555555555 355555555554  5555555555555555555555 255555  55555


Q ss_pred             ccchhHHHHHHhhc
Q psy11069        372 VAKSSLYAHLKHVH  385 (391)
Q Consensus       372 ~~~~~L~~H~~~~H  385 (391)
                      .+...|..|++.||
T Consensus        76 ~~~~~l~~H~~~~~   89 (110)
T 2csh_A           76 MWRDSFHRHVTSCT   89 (110)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcc
Confidence            55555555555554

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.71  E-value=7.9e-17  Score=121.82  Aligned_cols=95  Identities=24%  Similarity=0.478  Sum_probs=85.5

Q ss_pred             CCCCCCCceecCCCCCCCcccChHHHHHHHHhcCCCCcccCccCCCCCCccccccCCHHHHHHHHhhcCCCCCccccccc
Q psy11069        103 KNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQK  182 (391)
Q Consensus       103 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~  182 (391)
                      .....+++|.|++  |++.|.+...|..|++.|.++++|.|.+       |++.|.....|..|++.|+++ ++|.|.  
T Consensus        10 ~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~-------C~~~f~~~~~l~~H~~~h~~~-~~~~C~--   77 (106)
T 2ee8_A           10 LPSKTKKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTCDI-------CHKAFRRQDHLRDHRYIHSKE-KPFKCQ--   77 (106)
T ss_dssp             CCCCCCCCCBCSS--SCCBCSSHHHHHHHHHHHCCSCCCBCSS-------SCCBCSCHHHHHHHGGGSCCC-CTTSCS--
T ss_pred             CCcCCCcCeECCC--CCCccCCHHHHHHHHHHcCCCCCcCCCC-------ccchhCCHHHHHHHHHHhCCC-CCeECC--
Confidence            3445678899996  9999999999999999999999999999       999999999999999999887 677777  


Q ss_pred             ccccccCCHHHHHHHHHHcCCCCcccc
Q psy11069        183 NCNKRFTTLSNLKMHMVRHGKPLTLCC  209 (391)
Q Consensus       183 ~C~~~f~~~~~l~~H~~~h~~~~~~~C  209 (391)
                      .|++.|.....|..|+++|+++++|.+
T Consensus        78 ~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           78 ECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            999999999999999999999888764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.70  E-value=4e-17  Score=122.08  Aligned_cols=84  Identities=36%  Similarity=0.745  Sum_probs=40.5

Q ss_pred             CccccCc--ccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChH
Q psy11069        267 EDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE  344 (391)
Q Consensus       267 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  344 (391)
                      ++|.|..  |++.|.....|..|++ .|.++++|.|..+.|++.|.+...|..|++ .|.++++|.|.+  |++.|.+..
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~   89 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGV--CNRSFSRSD   89 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHH-HHSCCCCEECCSSSCCCEESSHHHHHHHHH-HHTSCCSCBCSS--SCCBCSSHH
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHH-HhCCCCCeeCCCCCCCCccCCHHHHHHHHH-HhCCCCCeECCC--CcCccCCHH
Confidence            3455553  5555555555555544 454455555531125555555555555544 244444444444  444444444


Q ss_pred             HHHHHHHHhc
Q psy11069        345 HLQEHMLQHN  354 (391)
Q Consensus       345 ~L~~H~~~h~  354 (391)
                      .|..|+++|+
T Consensus        90 ~l~~H~~~H~   99 (100)
T 2ebt_A           90 HLALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            4444444443

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.69  E-value=5.3e-17  Score=118.56  Aligned_cols=86  Identities=28%  Similarity=0.568  Sum_probs=64.1

Q ss_pred             CCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccc
Q psy11069        295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAK  374 (391)
Q Consensus       295 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~  374 (391)
                      .++|.|..++|++.|.+...|..|++ .|.++++|.|++..|++.|.+...|..|+++|++++ +|.|+.  |++.|.+.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~--C~~~f~~~   78 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR-PFQCQK--CDRAFSRS   78 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHT-TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCC-CEECSS--SSCEESSH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHH-hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCC-CccCCC--CCcccCCH
Confidence            45677765557777777777777777 477777777763238888888888888888887777 488877  88888888


Q ss_pred             hhHHHHHHhh
Q psy11069        375 SSLYAHLKHV  384 (391)
Q Consensus       375 ~~L~~H~~~~  384 (391)
                      ..|..|+++|
T Consensus        79 ~~l~~H~~~H   88 (89)
T 2wbs_A           79 DHLALHMKRH   88 (89)
T ss_dssp             HHHHHHGGGG
T ss_pred             HHHHHHHHhh
Confidence            8888887776

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=5.4e-17  Score=120.11  Aligned_cols=87  Identities=31%  Similarity=0.635  Sum_probs=76.7

Q ss_pred             CCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCC--CccCCCCCCCCcccC
Q psy11069        264 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNM--RMFPCPLVTCGKSFL  341 (391)
Q Consensus       264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~--~~~~C~~~~C~~~f~  341 (391)
                      .++++|.|.+|++.|.+...|..|++ .|.++++|.|..  |++.|.+...|..|++. |.++  ++|.|.+  |++.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~-h~~~~~~~~~C~~--C~~~f~   76 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPV--CGLRFKRKDRMSYHVRS-HDGSVGKPYICQS--CGKGFS   76 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHH-HSCSSCSEECSS--SCCEESCHHHHHHHHHH-HCCCCCSSBCCSS--SCCCBS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHH-hcCCCCCCcCCC--CCCccCCHHHHHHHHHH-hcCCCCCceECCC--ccchhC
Confidence            35678999999999999999999987 899999999987  99999999999999985 6665  8999998  999999


Q ss_pred             ChHHHHHHHH-HhcCC
Q psy11069        342 RSEHLQEHML-QHNEN  356 (391)
Q Consensus       342 ~~~~L~~H~~-~h~~~  356 (391)
                      +...|..|++ .|.++
T Consensus        77 ~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           77 RPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SHHHHHHHHHHTSCCC
T ss_pred             CHHHHHHHHHHhcCCC
Confidence            9999999986 56654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.9e-17  Score=125.51  Aligned_cols=88  Identities=28%  Similarity=0.496  Sum_probs=80.4

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccc
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMS  370 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~  370 (391)
                      .|.++++|.|..  |++.|.+...|..|++. |  .++|.|.+  |++.|.+...|..|++ |++++ +|.|+.  |++.
T Consensus        10 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~-H--~~~~~C~~--C~~~f~~~~~l~~H~~-H~~~~-~~~C~~--C~~~   78 (107)
T 1wjp_A           10 PVENKEVYQCRL--CNAKLSSLLEQGSHERL-C--RNAAVCPY--CSLRFFSPELKQEHES-KCEYK-KLTCLE--CMRT   78 (107)
T ss_dssp             CCCCCCCCBCTT--TCCBCSSHHHHHHHHHH-H--HHSBCCTT--TCCCBSSHHHHHHHHH-HCSTG-GGEEGG--GTEE
T ss_pred             ccCCCcCeECCC--CCCccCCHHHHHHHHHH-C--CCCccCCC--CCCccCCHHHHHHHHH-cCCCC-CccCcc--ccch
Confidence            788999999988  99999999999999995 6  47999998  9999999999999996 99998 599999  9999


Q ss_pred             cccchhHHHHHHhhcCCCC
Q psy11069        371 YVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       371 f~~~~~L~~H~~~~H~~~~  389 (391)
                      |.+...|..|++.+|.+++
T Consensus        79 f~~~~~L~~H~~~~H~~~~   97 (107)
T 1wjp_A           79 FKSSFSIWRHQVEVHNQNN   97 (107)
T ss_dssp             CSSHHHHHHHHHHTSCCCC
T ss_pred             hCCHHHHHHHHHHHcCCCC
Confidence            9999999999986665554

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=6.4e-17  Score=123.23  Aligned_cols=85  Identities=24%  Similarity=0.545  Sum_probs=80.1

Q ss_pred             CCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCCh
Q psy11069        264 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRS  343 (391)
Q Consensus       264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~  343 (391)
                      .++++|.| .|++.|.+...|..|++ .|.++++|.|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+.
T Consensus         6 ~~~k~~~C-~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~   78 (110)
T 2csh_A            6 SGDKLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGV--CGKKFKMKHHLVGHMK-IHTGIKPYECNI--CAKRFMWR   78 (110)
T ss_dssp             CCCCCEEC-TTSCEESSHHHHHHHHH-HHSCCCSEECTT--TSCEESSSHHHHHHHT-TTCCCCCEECSS--SCCEESCH
T ss_pred             CCCCCEec-cCCCccCCHHHHHHHHH-HcCCCcCccCCC--CCcccCCHHHHHHHHH-HcCCCCCeeCCC--CcchhcCH
Confidence            66789999 99999999999999988 899999999988  9999999999999999 599999999998  99999999


Q ss_pred             HHHHHHHHHhcC
Q psy11069        344 EHLQEHMLQHNE  355 (391)
Q Consensus       344 ~~L~~H~~~h~~  355 (391)
                      ..|..|+++|+.
T Consensus        79 ~~l~~H~~~~~~   90 (110)
T 2csh_A           79 DSFHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHccc
Confidence            999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.67  E-value=1.4e-16  Score=118.99  Aligned_cols=89  Identities=27%  Similarity=0.539  Sum_probs=80.0

Q ss_pred             CCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCccccccc
Q psy11069        294 STKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVA  373 (391)
Q Consensus       294 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~  373 (391)
                      ..++|.|..+.|++.|.+...|..|++ .|.++++|.|.+..|++.|.+...|..|+++|++++ +|.|+.  |++.|.+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~--C~~~f~~   87 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK-PFQCGV--CNRSFSR   87 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHH-HHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCC-SCBCSS--SCCBCSS
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHH-HhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCC-CeECCC--CcCccCC
Confidence            457899985569999999999999999 599999999973349999999999999999999999 499999  9999999


Q ss_pred             chhHHHHHHhhcC
Q psy11069        374 KSSLYAHLKHVHS  386 (391)
Q Consensus       374 ~~~L~~H~~~~H~  386 (391)
                      ...|..|+++|++
T Consensus        88 ~~~l~~H~~~H~~  100 (100)
T 2ebt_A           88 SDHLALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999874

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.65  E-value=9.1e-17  Score=106.78  Aligned_cols=57  Identities=30%  Similarity=0.570  Sum_probs=42.2

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      |+||.|..  ||+.|.+...|..|+++|++++| |.|+.  ||++|.+.+.|..|+++|+++
T Consensus         2 EKpy~C~~--C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~--C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRP-RSCPE--CGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTT--TCCEESSHHHHHHHHHHHHTCCC-EECTT--TCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCC--CCCEeCCHHHHHHHHHHhCCCcC-eECCC--CCCCcCCHHHHHHHhCccCCC
Confidence            56777776  77777777777777777777773 77777  777777777777777776664

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.64  E-value=1.5e-16  Score=116.22  Aligned_cols=84  Identities=36%  Similarity=0.756  Sum_probs=66.8

Q ss_pred             CccccCc--ccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChH
Q psy11069        267 EDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE  344 (391)
Q Consensus       267 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  344 (391)
                      .+|.|+.  |++.|.+...|..|++ .|.++++|.|+.+.|++.|.+...|..|++ .|.++++|.|+.  |++.|.+..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~   79 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQK--CDRAFSRSD   79 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHT-TSCSSCCEECCSTTTCCEESSHHHHHHHHH-HHHCCCCEECSS--SSCEESSHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHH-hcCCCCCcCCCCCCCCCccCCHHHHHHHHH-HcCCCCCccCCC--CCcccCCHH
Confidence            5678887  8888888888888876 788888888852248888888888888887 478888888887  888888888


Q ss_pred             HHHHHHHHhc
Q psy11069        345 HLQEHMLQHN  354 (391)
Q Consensus       345 ~L~~H~~~h~  354 (391)
                      .|..|+++|.
T Consensus        80 ~l~~H~~~H~   89 (89)
T 2wbs_A           80 HLALHMKRHF   89 (89)
T ss_dssp             HHHHHGGGGC
T ss_pred             HHHHHHHhhC
Confidence            8888888773

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.62  E-value=2e-16  Score=105.09  Aligned_cols=57  Identities=32%  Similarity=0.694  Sum_probs=36.3

Q ss_pred             CCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       295 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |+||+|..  |++.|.+...|..|++ .|++++||.|..  ||+.|.+...|..|+++|+++
T Consensus         2 EKpy~C~~--C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~--C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNF--CGKTYRDASGLSRHRR-AHLGYRPRSCPE--CGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTT--TCCEESSHHHHHHHHH-HHHTCCCEECTT--TCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCC--CCCEeCCHHHHHHHHH-HhCCCcCeECCC--CCCCcCCHHHHHHHhCccCCC
Confidence            45666655  6666666666666666 366666666665  666666666666666666654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.61  E-value=4.3e-17  Score=118.81  Aligned_cols=84  Identities=21%  Similarity=0.350  Sum_probs=74.2

Q ss_pred             CCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccc
Q psy11069        295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAK  374 (391)
Q Consensus       295 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~  374 (391)
                      ++||.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.+...|..|+++|++ . +|.|+.  |++.|.+.
T Consensus         1 ek~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~h~~-~-~~~c~~--C~~~f~~~   71 (88)
T 1llm_C            1 MKPFQCRI--CMRNFSRSDHLTTHIR-THTGEKPFACDI--CGRKFARSDERKRHRDIQHI-L-PILEDK--VEELLSKN   71 (88)
T ss_dssp             CCCEECTT--TCCEESCHHHHHHHHH-HHHCCCCEECTT--TCCEESSHHHHHHHHHHHTH-H-HHHHHH--HHHHHHHH
T ss_pred             CCCCcCCC--CCCccCCHHHHHHHHH-HcCCCCCccCCC--CCCccCCHHHHHHHHHHhCC-C-cchHHH--HHHHHHHH
Confidence            47899987  9999999999999998 488899999997  99999999999999999986 4 599988  99999999


Q ss_pred             hhHHHHHHhhcCC
Q psy11069        375 SSLYAHLKHVHST  387 (391)
Q Consensus       375 ~~L~~H~~~~H~~  387 (391)
                      ..|..|++.+|+.
T Consensus        72 ~~L~~H~~~~h~~   84 (88)
T 1llm_C           72 YHLENEVARLKKL   84 (88)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH
Confidence            9999999998853

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=7.2e-16  Score=109.76  Aligned_cols=77  Identities=32%  Similarity=0.696  Sum_probs=57.1

Q ss_pred             CCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccc
Q psy11069        293 ESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYV  372 (391)
Q Consensus       293 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~  372 (391)
                      +++++|.|..+.|++.|.+...|..|++..|.++++|.|.++.|++.|.+...|..|+++|++++| |.|+.  |++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~--C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF--SGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCCS--SSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC-eeCCC--CCCCCC
Confidence            456677776555788888888888887744777777888744488888888888888888887774 88877  887773

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.60  E-value=8.5e-16  Score=110.99  Aligned_cols=82  Identities=24%  Similarity=0.489  Sum_probs=50.6

Q ss_pred             cccc--ccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcC-ccccccc
Q psy11069        297 NFKC--THDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQD-CLMSYVA  373 (391)
Q Consensus       297 ~~~C--~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~-C~~~f~~  373 (391)
                      ||.|  +.  |++.|.+...|..|++ .|.++++|.|++.+|++.|.+...|..|+++|++    |.|+..+ |++.|.+
T Consensus         1 p~~C~~~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~C~~~f~~   73 (85)
T 2j7j_A            1 MYVCHFEN--CGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVGKT   73 (85)
T ss_dssp             CEECCSTT--CCCEESSHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSSCCCEESS
T ss_pred             CccCCCCC--CCcccCCHHHHHHHHH-HhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCCCCCccCC
Confidence            4566  44  6666666666666665 3666666666533366666666666666666665    5664322 6666666


Q ss_pred             chhHHHHHHhhc
Q psy11069        374 KSSLYAHLKHVH  385 (391)
Q Consensus       374 ~~~L~~H~~~~H  385 (391)
                      ...|..|++.||
T Consensus        74 ~~~l~~H~~~hh   85 (85)
T 2j7j_A           74 WTLYLKHVAECH   85 (85)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence            666666666665

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.56  E-value=1.8e-16  Score=115.48  Aligned_cols=83  Identities=20%  Similarity=0.388  Sum_probs=71.9

Q ss_pred             CCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHH
Q psy11069        266 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEH  345 (391)
Q Consensus       266 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  345 (391)
                      +++|.|++|++.|.....|..|++ +|.+++||.|..  |++.|.+...|..|++.+|  ..+|.|..  |++.|.+...
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~h~--~~~~~c~~--C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDI--CGRKFARSDERKRHRDIQH--ILPILEDK--VEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTT--TCCEESSHHHHHHHHHHHT--HHHHHHHH--HHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHH-HcCCCCCccCCC--CCCccCCHHHHHHHHHHhC--CCcchHHH--HHHHHHHHhh
Confidence            368999999999999999999987 788999999987  9999999999999998644  37899987  9999999999


Q ss_pred             HHHHHHHhcC
Q psy11069        346 LQEHMLQHNE  355 (391)
Q Consensus       346 L~~H~~~h~~  355 (391)
                      |..|++.+++
T Consensus        74 L~~H~~~~h~   83 (88)
T 1llm_C           74 LENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999987654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=2.4e-15  Score=108.89  Aligned_cols=80  Identities=25%  Similarity=0.373  Sum_probs=49.8

Q ss_pred             HHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCC---CccCCCCCCCCcccCChHHHHHHHHHhcCCCCce
Q psy11069        284 LREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNM---RMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKF  360 (391)
Q Consensus       284 l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~---~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~  360 (391)
                      |.+|++ +|.++++|.|..  |++.|.+...|..|++.+|...   ++|.|.+  |++.|.+...|..|+++|++++ ++
T Consensus         3 ~~~H~~-~H~~~k~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~-~~   76 (86)
T 1x6h_A            3 SGSSGR-THTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRRNTMARHADNCAGPD-GV   76 (86)
T ss_dssp             TTCCST-TCCCCCCEECSS--SSCEESSHHHHHHHHHHTTCSSCCCCCEECSS--SCCEESCHHHHHHHHHHCCCCC-SC
T ss_pred             cccccc-eecCCCCCcCCC--CCCccCCHHHHHHHHHHhcCCcCCCcceECCC--CCChhCCHHHHHHHHHHccCCC-Cc
Confidence            334555 566666666655  6666666666666665444432   5666665  7777777777777777666666 36


Q ss_pred             eccCcCccccc
Q psy11069        361 TCPYQDCLMSY  371 (391)
Q Consensus       361 ~C~~~~C~~~f  371 (391)
                      .|..  |+..|
T Consensus        77 ~~~~--~~~~~   85 (86)
T 1x6h_A           77 EGEN--SGPSS   85 (86)
T ss_dssp             CCCC--CCCCC
T ss_pred             ccCC--CCCCC
Confidence            6666  66554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.54  E-value=4.6e-15  Score=107.08  Aligned_cols=82  Identities=33%  Similarity=0.593  Sum_probs=67.5

Q ss_pred             cccc--CcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCC-CCcccCChH
Q psy11069        268 DLVC--KGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVT-CGKSFLRSE  344 (391)
Q Consensus       268 ~~~C--~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~-C~~~f~~~~  344 (391)
                      ||.|  +.|++.|.....|..|++ +|.++++|+|+.++|++.|.+...|..|++. |.+   |.|.... |++.|.+..
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~---~~C~~~~~C~~~f~~~~   75 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAG---YPCKKDDSCSFVGKTWT   75 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHH-HHS---EECCSCSSCCCEESSHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHH-HhCCCCCeeCCCCCCcCccCCHHHHHHHHHH-hCC---CCCCCCCCCCCccCCHH
Confidence            5788  889999999999999987 7888888999544599999999999999884 665   8887422 899999999


Q ss_pred             HHHHHHHHhc
Q psy11069        345 HLQEHMLQHN  354 (391)
Q Consensus       345 ~L~~H~~~h~  354 (391)
                      .|..|+++|+
T Consensus        76 ~l~~H~~~hh   85 (85)
T 2j7j_A           76 LYLKHVAECH   85 (85)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            9999988875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=1.1e-14  Score=103.57  Aligned_cols=74  Identities=31%  Similarity=0.505  Sum_probs=52.0

Q ss_pred             CCCccccCc--ccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccC
Q psy11069        265 NPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFL  341 (391)
Q Consensus       265 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~  341 (391)
                      ++++|.|..  |++.|.+...|..|++..|.++++|.|..++|++.|.+...|..|++ .|.++++|.|.+  |++.|.
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C~k~F~   79 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICEF--SGPSSG   79 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHH-HHHTSCCCSCCS--SSCCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHH-HhCCCCCeeCCC--CCCCCC
Confidence            445677765  77777777777777664577777777753347777777777777777 477777777776  777763

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.53  E-value=1.1e-15  Score=119.79  Aligned_cols=81  Identities=26%  Similarity=0.410  Sum_probs=55.0

Q ss_pred             CccccccCCcCcccc------CHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCccc
Q psy11069        296 KNFKCTHDGCKLLFS------SKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLM  369 (391)
Q Consensus       296 ~~~~C~~~~C~~~f~------~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~  369 (391)
                      +++.|..  |.+.|.      ....|..|++  |.+++||.|.+  |++.|.+...|..|+++|  ++ +|.|+.  |++
T Consensus        40 ~~~~c~~--~~~~~~~~~~~~~~~~l~~h~~--h~~~~~~~C~~--C~k~f~~~~~l~~H~~~H--~~-~~~C~~--C~k  108 (129)
T 2wbt_A           40 KRLIRAI--VKTLIHNPQLLDESSYLYRLLA--SKAISQFVCPL--CLMPFSSSVSLKQHIRYT--EH-TKVCPV--CKK  108 (129)
T ss_dssp             HHHHHHH--HHHHHHCGGGTTTHHHHHHHHH--HHHHCSEECTT--TCCEESSHHHHHHHHHHT--CC-CCBCTT--TCC
T ss_pred             Ccccchh--hhcccCCCcccCCHHHHHHHHH--hCCCCCeECCC--CCcccCCHhHHHHHHHHC--CC-CCCCCC--CCc
Confidence            4455554  554443      5555556653  66677777776  777777777777777777  55 477777  777


Q ss_pred             ccccchhHHHHHHhhcCC
Q psy11069        370 SYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       370 ~f~~~~~L~~H~~~~H~~  387 (391)
                      .|.+...|.+|+++||++
T Consensus       109 ~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          109 EFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             BCSSHHHHHHHHHHTTCC
T ss_pred             ccCCHHHHHHHHHHHCCc
Confidence            777777777777777765

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=2.8e-14  Score=103.19  Aligned_cols=81  Identities=26%  Similarity=0.448  Sum_probs=70.6

Q ss_pred             hHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCC---CccccccCCcCccccCHHHHHHhhhccCCCCCccC
Q psy11069        254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST---KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFP  330 (391)
Q Consensus       254 ~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~---~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~  330 (391)
                      +|.+|+++| .++++|.|.+|++.|.....|..|++..|...   ++|.|..  |++.|.+...|..|++ .|.+++++.
T Consensus         2 s~~~H~~~H-~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~-~h~~~~~~~   77 (86)
T 1x6h_A            2 SSGSSGRTH-TGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRRNTMARHAD-NCAGPDGVE   77 (86)
T ss_dssp             TTTCCSTTC-CCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSS--SCCEESCHHHHHHHHH-HCCCCCSCC
T ss_pred             Cccccccee-cCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCC--CCChhCCHHHHHHHHH-HccCCCCcc
Confidence            467899999 56789999999999999999999988455443   7899988  9999999999999999 599999999


Q ss_pred             CCCCCCCccc
Q psy11069        331 CPLVTCGKSF  340 (391)
Q Consensus       331 C~~~~C~~~f  340 (391)
                      |..  |+..|
T Consensus        78 ~~~--~~~~~   85 (86)
T 1x6h_A           78 GEN--SGPSS   85 (86)
T ss_dssp             CCC--CCCCC
T ss_pred             cCC--CCCCC
Confidence            997  98876

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.2e-15  Score=110.44  Aligned_cols=75  Identities=17%  Similarity=0.301  Sum_probs=46.9

Q ss_pred             CCChhHHHHHHHHhcCCCCccccccCCcCcccc-CHHHHHHhhhccCCC-CCccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        278 FKVPCRLREHYKAVHESTKNFKCTHDGCKLLFS-SKSALKRHNKSKHLN-MRMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       278 f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~-~~~~l~~H~~~~H~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      +.....+..|++ +|.++++|.|..  |++.|. +...|..|++. |.+ +++|.|.+  |++.|.+...|.+|+++|++
T Consensus         6 ~~~~~~~~~h~~-~h~~~~~~~C~~--C~k~f~~~~~~L~~H~~~-h~~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A            6 SGPGGPEEQWQR-AIHERGEAVCPT--CNVVTRKTLVGLKKHMEV-CQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             CCCCCSCSHHHH-TTTTTSCCCCTT--TCCCCSSCSHHHHHHHHH-HHHHHHHHSCSS--SCCCCSCHHHHHHHHHHHSC
T ss_pred             CCCCCcHHHHHH-HhccCCCcCCCC--CCCChhhhHHHHHHHHHH-HcCCCCCEECCC--CCCccCCHHHHHHHHHHHcC
Confidence            444455556655 666666666655  666666 66666666663 554 66666665  66666666666666666666


Q ss_pred             CCC
Q psy11069        356 NKP  358 (391)
Q Consensus       356 ~~~  358 (391)
                      ++|
T Consensus        80 ~kp   82 (98)
T 2gqj_A           80 AKP   82 (98)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            663

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.50  E-value=2.4e-15  Score=117.90  Aligned_cols=111  Identities=22%  Similarity=0.329  Sum_probs=84.0

Q ss_pred             CCCeeccCCCCCccccchhhHhccccccCCCCCccccCcccccCC------ChhHHHHHHHHhcCCCCccccccCCcCcc
Q psy11069        235 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFK------VPCRLREHYKAVHESTKNFKCTHDGCKLL  308 (391)
Q Consensus       235 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~------~~~~l~~H~~~~H~~~~~~~C~~~~C~~~  308 (391)
                      .++|.|.+.++...|.....+..|....  ..+.+.|++|++.|.      ....|..|+  .|.+++||.|..  |++.
T Consensus        10 ~k~~~~~~k~~~~~~s~ee~~~~~~l~~--~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~--~h~~~~~~~C~~--C~k~   83 (129)
T 2wbt_A           10 SKKYLSNHKGIFIHVTLEELKRYHQLTP--EQKRLIRAIVKTLIHNPQLLDESSYLYRLL--ASKAISQFVCPL--CLMP   83 (129)
T ss_dssp             CCGGGGCSSCEEEECCHHHHHHHTTSCH--HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH--HHHHHCSEECTT--TCCE
T ss_pred             ccccccccCCeeeeecHHhhhccccCCh--hhCcccchhhhcccCCCcccCCHHHHHHHH--HhCCCCCeECCC--CCcc
Confidence            5677776534444444333333333322  235677877776654      667777775  588899999988  9999


Q ss_pred             ccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        309 FSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       309 f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |.+...|..|+++ |  ++||.|.+  |++.|.+...|.+|+++|++.
T Consensus        84 f~~~~~l~~H~~~-H--~~~~~C~~--C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           84 FSSSVSLKQHIRY-T--EHTKVCPV--CKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             ESSHHHHHHHHHH-T--CCCCBCTT--TCCBCSSHHHHHHHHHHTTCC
T ss_pred             cCCHhHHHHHHHH-C--CCCCCCCC--CCcccCCHHHHHHHHHHHCCc
Confidence            9999999999995 7  88999998  999999999999999999986

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=4.1e-14  Score=100.04  Aligned_cols=62  Identities=27%  Similarity=0.526  Sum_probs=30.4

Q ss_pred             CCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCC
Q psy11069        266 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC  331 (391)
Q Consensus       266 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  331 (391)
                      +++|.|++|++.|.....|..|++ .|.++++|.|..  |++.|.+...|..|++ .|.+++||.|
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~~-~H~~~~p~~C   77 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDE--CGKAFIQRSHLIGHHR-VHTGSGPSSG   77 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT-TTCCSCSEECSS--SCCEESSHHHHHHHGG-GSCCCCCCCC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHH-HcCCCcCeeCCC--CCCccCCHHHHHHHHH-HhCCCCCCCC
Confidence            344555555555555555555544 444444555544  5555555555555544 2444444444

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=3.8e-14  Score=100.17  Aligned_cols=70  Identities=31%  Similarity=0.572  Sum_probs=55.3

Q ss_pred             HHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHH-HhcCCCCceeccCcCcccccccchhHHHHHHhhcCCCC
Q psy11069        315 LKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML-QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       315 l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      |.+|++ .|.++++|.|.+  |++.|.+...|..|++ .|.++..+|.|+.  |++.|.+...|..|++.+|+...
T Consensus         3 ~~~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A            3 SGSSGR-THSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             CCCCCC-CCSCCCSEECTT--TCCEESCHHHHHHHHHHHSSSSCSSEECSS--SSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CCcccc-ccCCCCCeECCC--cCchhCCHHHHHHHHHHhcCCCCCccCCCC--CCCccCCHHHHHHHHHHhCCCCC
Confidence            456787 588888888887  8888888888888887 4555422588888  88888888888888888887664

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=2.8e-14  Score=105.79  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=41.6

Q ss_pred             CCCCccccccCCcCccccCHHHHHHhhhccC---CCCCccCCCCCCCCcccCChHHHHHH-HHHhcCCCCceeccC
Q psy11069        293 ESTKNFKCTHDGCKLLFSSKSALKRHNKSKH---LNMRMFPCPLVTCGKSFLRSEHLQEH-MLQHNENKPKFTCPY  364 (391)
Q Consensus       293 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H---~~~~~~~C~~~~C~~~f~~~~~L~~H-~~~h~~~~~~~~C~~  364 (391)
                      ++++||.|..  |++.|.+...|..|++..|   .+++||.|..  ||+.|.+...|..| +++|++++| |.|.+
T Consensus        14 ~gekpy~C~~--Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~--Cgk~F~~~~~L~~H~~r~Htgekp-y~C~~   84 (102)
T 2ghf_A           14 KVEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVE--CNFLTKRYDALSEHNLKYHPGEEN-FKLTM   84 (102)
T ss_dssp             CCCSSEECSS--CSCEESCHHHHHHHHHHHCSSCCCSCCEEETT--TTEEESSTHHHHTHHHHTSTTCCC-EEEEE
T ss_pred             CCCcCcCCCC--CCCccCCHHHHHHHHHhhCCCCCCCCCcCCCC--CCcccCCHHHHHHHHHHhcCCCCC-eeCCc
Confidence            4556666655  6666666666666665335   4456666665  66666666666666 566666663 66655

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=5.3e-14  Score=99.45  Aligned_cols=71  Identities=24%  Similarity=0.427  Sum_probs=37.2

Q ss_pred             HhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCC-CccccccCCcCccccCHHHHHHhhhccCCCCCc
Q psy11069        255 LKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST-KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM  328 (391)
Q Consensus       255 l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~  328 (391)
                      |.+|+++| .++++|.|++|++.|.....|..|++..|.++ ++|+|..  |++.|.+...|..|++.+|..+.|
T Consensus         3 ~~~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            3 SGSSGRTH-SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCCCCC-SCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSS--SSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCcccccc-CCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCC--CCCccCCHHHHHHHHHHhCCCCCC
Confidence            34455555 34455555555555555555555554345443 4555544  555555555555555544444443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1.1e-13  Score=97.80  Aligned_cols=66  Identities=29%  Similarity=0.627  Sum_probs=60.7

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceec
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C  362 (391)
                      .+.++++|.|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|
T Consensus        12 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~p-~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDE--CGKSFSHSSDLSKHRR-THTGEKPYKCDE--CGKAFIQRSHLIGHHRVHTGSGP-SSG   77 (77)
T ss_dssp             CCCCSCSSBCSS--SCCBCSCHHHHHHHHT-TTCCSCSEECSS--SCCEESSHHHHHHHGGGSCCCCC-CCC
T ss_pred             cCCCCCCEECCC--CCcccCCHHHHHHHHH-HcCCCcCeeCCC--CCCccCCHHHHHHHHHHhCCCCC-CCC
Confidence            466789999988  9999999999999999 599999999998  99999999999999999999995 987

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.46  E-value=6.7e-14  Score=99.99  Aligned_cols=62  Identities=23%  Similarity=0.575  Sum_probs=52.5

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      .+...++|.|++  |++.|.+...|.+|+++|++++ +|.|+.  |+++|.++..|.+|+++.|.++
T Consensus        22 ~~~~~~~h~C~~--Cgk~F~~~~~L~~H~~~H~~~k-~~~C~~--C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           22 LSASAECHLCPV--CGESFASKGAQERHLRLLHAAQ-VFPCKY--CPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SCCCCTTEECTT--SCCEESSHHHHHHHHHTTSCSS-SEECTT--SSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCEECCC--CCCCcCcHHHHhhhhhhccCCC-ccCCCC--CCCEeCCHHHHHHhCcccCcCC
Confidence            466778899997  9999999999999999999988 499988  9999999999999987766543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=6.7e-14  Score=97.51  Aligned_cols=62  Identities=29%  Similarity=0.481  Sum_probs=46.8

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      .|.++++|.|.+  |++.|.+...|..|+++|++++ +|.|+.  |++.|.+...|.+|+++|+++.
T Consensus         8 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~-~~~C~~--C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            8 IHSGEKPYGCVE--CGKAFSRSSILVQHQRVHTGEK-PYKCLE--CGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TTTTCCCEECSS--SCCEESSHHHHHHHHHGGGCSC-CEECSS--SCCEESSHHHHHHHHHHHHSSS
T ss_pred             ccCCCCCccCCC--CCCccCCHHHHHHHHHhcCCCC-CeECCC--CCcccCCHHHHHHHHHhcCCCC
Confidence            477777777776  7777777777777777777777 377777  7777777777777777777653

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.45  E-value=8.2e-14  Score=92.16  Aligned_cols=57  Identities=32%  Similarity=0.597  Sum_probs=47.8

Q ss_pred             CCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        325 NMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       325 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      ++++|.|.+  |++.|.+...|..|+++|++++| |.|+.  |++.|.+...|..|++.||+
T Consensus         1 g~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~-~~C~~--C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSY--CGKFFRSNYYLNIHLRTHTGEKP-YKCEF--CEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTT--TCCBCSCHHHHHHHHHHHHCCCC-EECSS--SSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCC--CcchhCChHHHHHHHHHcCCCCC-cCCCC--CcchhCCHHHHHHHHHHhcC
Confidence            467899997  99999999999999999999884 99988  99999999999999999885

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=9.3e-14  Score=96.18  Aligned_cols=60  Identities=25%  Similarity=0.404  Sum_probs=30.4

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      |.++++|.|.+  |++.|.+...|..|+++|++++ +|.|+.  |++.|.+...|..|++.||++
T Consensus         4 ~~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~-~~~C~~--C~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            4 GSSGHPEKCSE--CSYSCSSKAALRIHERIHCTDR-PFKCNY--CSFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             CCCCCSEECSS--SSCEESSHHHHHHHHGGGCCSC-SEECSS--SSCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCCCeECCC--CCcccCCHHHHHHHHHHcCCCC-CEeCCC--CCCccCCHHHHHHHHHHHhCC
Confidence            44445555554  5555555555555555555544 255544  555555555555555555544

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.9e-14  Score=106.80  Aligned_cols=78  Identities=17%  Similarity=0.211  Sum_probs=58.7

Q ss_pred             ccccCHHHHHHhhhccCCCCCccCCCCCCCCcccC-ChHHHHHHHHHhcC-CCCceeccCcCcccccccchhHHHHHHhh
Q psy11069        307 LLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFL-RSEHLQEHMLQHNE-NKPKFTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       307 ~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~-~~~~L~~H~~~h~~-~~~~~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      ..+.....+..|++ .|.++++|.|.+  |++.|. +...|..|+++|++ ++ +|.|++  |++.|.++..|..|++.|
T Consensus         4 ~s~~~~~~~~~h~~-~h~~~~~~~C~~--C~k~f~~~~~~L~~H~~~h~~~~~-~~~C~~--C~k~F~~~~~L~~H~~~h   77 (98)
T 2gqj_A            4 GSSGPGGPEEQWQR-AIHERGEAVCPT--CNVVTRKTLVGLKKHMEVCQKLQD-ALKCQH--CRKQFKSKAGLNYHTMAE   77 (98)
T ss_dssp             CCCCCCCSCSHHHH-TTTTTSCCCCTT--TCCCCSSCSHHHHHHHHHHHHHHH-HHSCSS--SCCCCSCHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHH-HhccCCCcCCCC--CCCChhhhHHHHHHHHHHHcCCCC-CEECCC--CCCccCCHHHHHHHHHHH
Confidence            34555556677777 577888888886  888888 88888888888877 66 488877  888888888888888888


Q ss_pred             cCCCCC
Q psy11069        385 HSTNKI  390 (391)
Q Consensus       385 H~~~~~  390 (391)
                      |++..+
T Consensus        78 ~~~kp~   83 (98)
T 2gqj_A           78 HSAKPS   83 (98)
T ss_dssp             SCSCSS
T ss_pred             cCCCCC
Confidence            876543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=6.5e-14  Score=103.83  Aligned_cols=67  Identities=22%  Similarity=0.293  Sum_probs=58.3

Q ss_pred             CCCCccccCcccccCCChhHHHHHHHHhc---CCCCccccccCCcCccccCHHHHHHh-hhccCCCCCccCCCC
Q psy11069        264 TNPEDLVCKGCGKQFKVPCRLREHYKAVH---ESTKNFKCTHDGCKLLFSSKSALKRH-NKSKHLNMRMFPCPL  333 (391)
Q Consensus       264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H---~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~~H~~~~~~~C~~  333 (391)
                      .++++|.|+.|++.|.....|..|++.+|   .+++||.|..  |++.|.+...|..| ++ .|++++||.|.+
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~--Cgk~F~~~~~L~~H~~r-~Htgekpy~C~~   84 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVE--CNFLTKRYDALSEHNLK-YHPGEENFKLTM   84 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETT--TTEEESSTHHHHTHHHH-TSTTCCCEEEEE
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCC--CCcccCCHHHHHHHHHH-hcCCCCCeeCCc
Confidence            46788999999999999999999987568   5688999987  99999999999999 66 699999999986

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=9.8e-14  Score=96.91  Aligned_cols=70  Identities=26%  Similarity=0.601  Sum_probs=57.4

Q ss_pred             HHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhc
Q psy11069        313 SALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       313 ~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      ..|..|++..|.++++|.|++..|++.|.+...|..|+++|+++++ |.|+.  |++.|.+...|..|+++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~-~~C~~--C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRI--CMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ----CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC-EECTT--TCCEESCHHHHHHHHTTCC
T ss_pred             CCccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC-eECCC--CCchhCCHHHHHHHHHhcC
Confidence            4566777778889999999733499999999999999999999884 99988  9999999999999998874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.43  E-value=1.8e-13  Score=90.51  Aligned_cols=57  Identities=26%  Similarity=0.636  Sum_probs=49.4

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCCC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      ||.|.+  |++.|.+...|..|+++|++++ +|.|+.  |++.|.+...|..|++.|++++|
T Consensus         1 p~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~~C~~--C~~~f~~~~~l~~H~~~h~~~kk   57 (57)
T 1bbo_A            1 KYICEE--CGIRXKKPSMLKKHIRTHTDVR-PYHCTY--CNFSFKTKGNLTKHMKSKAHSKK   57 (57)
T ss_dssp             CCBCTT--TCCBCSSHHHHHHHHHHTSSCC-CEECSS--SSCEESSHHHHHHHHHSSSSCCC
T ss_pred             CCcCCC--CcCcCCCHHHHHHHHHhcCCCC-CccCCC--CCchhcCHHHHHHHHHHhcccCC
Confidence            588887  9999999999999999988888 499988  99999999999999998888765

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.42  E-value=1.8e-13  Score=95.90  Aligned_cols=60  Identities=20%  Similarity=0.394  Sum_probs=31.1

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      +.++++|.|..  |++.|.+...|..|+++|++++ +|.|+.  |++.|.+...|.+|++.|+++
T Consensus        12 ~~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~~-~~~C~~--C~k~f~~~~~L~~H~~~H~~~   71 (74)
T 2lce_A           12 THSDKPYKCDR--CQASFRYKGNLASHKTVHTGEK-PYRCNI--CGAQFNRPANLKTHTRIHSGE   71 (74)
T ss_dssp             CCCCCSBCCTT--SSCCBSCHHHHHHHHHHHCCCC-SEECTT--TCCEESCHHHHHHHHHHHCCS
T ss_pred             cCCCCCeECCC--CCceeCCHHHHHHHHHHcCCCC-CEECCC--CCchhCCHHHHHHHHHhcCCC
Confidence            34445555554  5555555555555555555554 255554  555555555555555555444

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.42  E-value=3.5e-13  Score=94.36  Aligned_cols=64  Identities=31%  Similarity=0.687  Sum_probs=60.1

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCce
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKF  360 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~  360 (391)
                      .+.++++|+|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+...|.+|+++|++++| |
T Consensus        11 ~~~~~~~~~C~~--C~k~f~~~~~l~~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~kp-~   74 (74)
T 2lce_A           11 MTHSDKPYKCDR--CQASFRYKGNLASHKT-VHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP-Y   74 (74)
T ss_dssp             CCCCCCSBCCTT--SSCCBSCHHHHHHHHH-HHCCCCSEECTT--TCCEESCHHHHHHHHHHHCCSCC-C
T ss_pred             ccCCCCCeECCC--CCceeCCHHHHHHHHH-HcCCCCCEECCC--CCchhCCHHHHHHHHHhcCCCCC-C
Confidence            577899999988  9999999999999999 599999999998  99999999999999999999985 5

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.1e-13  Score=94.52  Aligned_cols=60  Identities=22%  Similarity=0.650  Sum_probs=46.6

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHH-h-cCCCCceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQ-H-NENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~-h-~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      .|.++++|.|+.  |++.|.+...|..|+++ | .+++ +|.|+.  |++.|.+...|..|++.+|+
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~~H~~~~~-~~~C~~--C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVK-VYPCPF--CFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTT--TCCEESSHHHHHHHHHHHSSSSCC-CEECTT--TCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCC--CcchhCCHHHHHHHHHHHcCCCCc-CeECCC--CCCccCCHHHHHHHHHHHcC
Confidence            477778888886  88888888888888877 5 3556 488877  88888888888888888876

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=2.2e-13  Score=94.31  Aligned_cols=63  Identities=29%  Similarity=0.471  Sum_probs=55.8

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKP  358 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~  358 (391)
                      .|+++++|+|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+...|..|+++|++++|
T Consensus         3 s~~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            3 SGSSGHPEKCSE--CSYSCSSKAALRIHER-IHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             SCCCCCSEECSS--SSCEESSHHHHHHHHG-GGCCSCSEECSS--SSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCeECCC--CCcccCCHHHHHHHHH-HcCCCCCEeCCC--CCCccCCHHHHHHHHHHHhCCCC
Confidence            477888999987  9999999999999998 488899999997  99999999999999999998875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=2.4e-13  Score=100.13  Aligned_cols=80  Identities=21%  Similarity=0.374  Sum_probs=63.6

Q ss_pred             cccCCChhHHHHHHHHhcCCCCccccccCCcCccc-cCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHH-HHH
Q psy11069        275 GKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLF-SSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEH-MLQ  352 (391)
Q Consensus       275 ~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f-~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H-~~~  352 (391)
                      ...|.....|..|.+ .|.++++|.|..  |++.| .+...|..|++. | ++++|.|.+  |++.|.....|..| +++
T Consensus        13 ~~~~~~~~~~~~~~~-~~~~~~~~~C~~--C~k~F~~~~~~L~~H~~~-h-~~k~~~C~~--Cgk~F~~~~~L~~H~~~~   85 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYL-EIVDKGSVSCPT--CQAVGRKTIEGLKKHMEN-C-KQEMFTCHH--CGKQLRSLAGMKYHVMAN   85 (96)
T ss_dssp             CCSSCTTCHHHHHHH-HHHHTSCEECTT--TCSCEESSHHHHHHHHHH-H-CCCCCCCSS--SCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHH-HhcCCCCcCCCC--CCCCcccCHHHHHHHHHH-H-CCCCeECCC--CCCeeCCHHHHHHHhHHh
Confidence            346677788888876 777888899977  99999 888899999884 7 888899987  99999999999999 777


Q ss_pred             hcCCCCceec
Q psy11069        353 HNENKPKFTC  362 (391)
Q Consensus       353 h~~~~~~~~C  362 (391)
                      |+++ |.|.+
T Consensus        86 H~~~-p~~~~   94 (96)
T 2ctd_A           86 HNSL-PSGPS   94 (96)
T ss_dssp             TCCC-SSCSC
T ss_pred             cCCC-CCCCC
Confidence            8654 33433

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.40  E-value=3.1e-13  Score=96.55  Aligned_cols=60  Identities=25%  Similarity=0.477  Sum_probs=41.4

Q ss_pred             CCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCC
Q psy11069        265 NPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMR  327 (391)
Q Consensus       265 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  327 (391)
                      ..++|.|++||+.|.....|.+|++ +|++++||.|..  |++.|.+...|.+|++..|+++.
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLR-LLHAAQVFPCKY--CPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHH-TTSCSSSEECTT--SSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhh-hccCCCccCCCC--CCCEeCCHHHHHHhCcccCcCCC
Confidence            3456777777777777777777766 677777777766  77777777777777655666553

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.4e-13  Score=94.04  Aligned_cols=61  Identities=26%  Similarity=0.693  Sum_probs=50.4

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccC-CCCCccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKH-LNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H-~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      +|++++||.|+.  |++.|.+...|..|++..| .++++|.|++  |++.|.+...|..|+++|++
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTT--TCCEESSHHHHHHHHHHHSSSSCCCEECTT--TCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCC--CcchhCCHHHHHHHHHHHcCCCCcCeECCC--CCCccCCHHHHHHHHHHHcC
Confidence            677888888877  8888888888888887546 5788888887  88888888888888888876

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=3.2e-13  Score=95.58  Aligned_cols=62  Identities=23%  Similarity=0.424  Sum_probs=43.1

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcC---CCCceeccCcCcccccccchhHHHHHHhhcCCCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE---NKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~---~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      |+++++|.|.+  |++.|.+...|..|+++|++   ++ +|.|+.  |++.|.+...|..|++.+|.+.+
T Consensus         2 h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~-~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A            2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAAL-RFPCEF--CGKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             CCSCCCEECSS--SCCEESSHHHHHHHHHHHHHHTTTC-CEECTT--TCCEESSHHHHHHHHHHTSTTTS
T ss_pred             CCCCcCeECCC--CCCeeCCHHHHHHHHHHhhccCCCc-ccCCCC--CCchhCCHHHHHHHHHHhCCCCC
Confidence            66677777776  77777777777777777764   55 477776  77777777777777766665543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=3.6e-13  Score=93.74  Aligned_cols=62  Identities=29%  Similarity=0.592  Sum_probs=51.1

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      +|.++++|+|..  |++.|.+...|..|++ .|.++++|.|.+  |++.|.+...|.+|+++|+++.
T Consensus         8 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            8 IHSGEKPYGCVE--CGKAFSRSSILVQHQR-VHTGEKPYKCLE--CGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TTTTCCCEECSS--SCCEESSHHHHHHHHH-GGGCSCCEECSS--SCCEESSHHHHHHHHHHHHSSS
T ss_pred             ccCCCCCccCCC--CCCccCCHHHHHHHHH-hcCCCCCeECCC--CCcccCCHHHHHHHHHhcCCCC
Confidence            677888888877  8888888888888888 488888888887  8888888888888888887764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=1.6e-12  Score=86.88  Aligned_cols=56  Identities=32%  Similarity=0.743  Sum_probs=42.7

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      +||.|.+  |++.|.+...|..|+++|++++ +|.|+.  |++.|.+...|..|++..|.+
T Consensus         1 k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~~C~~--C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK-PYPCGL--CNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTT--TCCCBSCHHHHHHHHHTTTSSC-SEECTT--TCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCC--CccccCCHHHHHHHHHHhCCCC-CccCCC--CCCccCCHHHHHHHHHHHcCC
Confidence            4678876  8888888888888888888777 488877  888888888888887554443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=3.5e-13  Score=94.05  Aligned_cols=64  Identities=30%  Similarity=0.620  Sum_probs=30.5

Q ss_pred             HHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHh
Q psy11069        287 HYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       287 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h  353 (391)
                      |+..+|.++++|.|+++.|++.|.+...|..|++ .|.++++|.|++  |++.|.+...|..|+++|
T Consensus         9 ~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             TTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHH-HHHCCCCEECTT--TCCEESCHHHHHHHHTTC
T ss_pred             hhhccCCCCCccCCcCCCCCCccCCHHHHHHHHH-hhCCCCCeECCC--CCchhCCHHHHHHHHHhc
Confidence            3333444445555531125555555555555544 244445555554  555555555555555444

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.32  E-value=9.8e-13  Score=86.88  Aligned_cols=55  Identities=22%  Similarity=0.494  Sum_probs=32.3

Q ss_pred             CCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       295 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      +++|.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.+...|..|+++|+
T Consensus         2 ~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSY--CGKFFRSNYYLNIHLR-THTGEKPYKCEF--CEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTT--TCCBCSCHHHHHHHHH-HHHCCCCEECSS--SSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCC--CcchhCChHHHHHHHH-HcCCCCCcCCCC--CcchhCCHHHHHHHHHHhc
Confidence            45566655  6666666666666666 356666666665  6666666666666666654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=2.6e-12  Score=94.56  Aligned_cols=78  Identities=21%  Similarity=0.304  Sum_probs=65.8

Q ss_pred             CcccChHHHHHHHHhcCCCCcccCccCCCCCCcccccc-CCHHHHHHHHhhcCCCCCcccccccccccccCCHHHHHHH-
Q psy11069        120 FTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGF-FSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMH-  197 (391)
Q Consensus       120 ~~f~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f-~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~f~~~~~l~~H-  197 (391)
                      ..|.....|..|++.|.++++|.|+.       |++.| .....|..|++.| ++ ++|.|.  .|++.|.....|..| 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~-------C~k~F~~~~~~L~~H~~~h-~~-k~~~C~--~Cgk~F~~~~~L~~H~   82 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPT-------CQAVGRKTIEGLKKHMENC-KQ-EMFTCH--HCGKQLRSLAGMKYHV   82 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTT-------TCSCEESSHHHHHHHHHHH-CC-CCCCCS--SSCCCCSSHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCC-------CCCCcccCHHHHHHHHHHH-CC-CCeECC--CCCCeeCCHHHHHHHh
Confidence            35566688899999998999999998       99999 8999999999999 65 777777  899999999999999 


Q ss_pred             HHHcCCCCccc
Q psy11069        198 MVRHGKPLTLC  208 (391)
Q Consensus       198 ~~~h~~~~~~~  208 (391)
                      +++|++...|.
T Consensus        83 ~~~H~~~p~~~   93 (96)
T 2ctd_A           83 MANHNSLPSGP   93 (96)
T ss_dssp             HHHTCCCSSCS
T ss_pred             HHhcCCCCCCC
Confidence            88887655444

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.29  E-value=2.7e-12  Score=84.69  Aligned_cols=56  Identities=29%  Similarity=0.624  Sum_probs=32.5

Q ss_pred             ccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       297 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      ||.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.+...|..|+++|++++
T Consensus         1 p~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEE--CGIRXKKPSMLKKHIR-THTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTT--TCCBCSSHHHHHHHHH-HTSSCCCEECSS--SSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCC--CcCcCCCHHHHHHHHH-hcCCCCCccCCC--CCchhcCHHHHHHHHHHhcccC
Confidence            355554  6666666666666655 355555666655  6666666666666666655543

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=5.3e-12  Score=84.24  Aligned_cols=54  Identities=30%  Similarity=0.677  Sum_probs=26.0

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCC
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHL  324 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  324 (391)
                      +|.|+.|++.|.....|..|++ .|.++++|.|+.  |++.|.+...|..|++..|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH-TTTSSCSEECTT--TCCEESSHHHHHHHHTTTSC
T ss_pred             cCcCCCCccccCCHHHHHHHHH-HhCCCCCccCCC--CCCccCCHHHHHHHHHHHcC
Confidence            3445555555555555555544 444444555544  55555555555555432343

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3.7e-12  Score=90.06  Aligned_cols=54  Identities=26%  Similarity=0.673  Sum_probs=25.7

Q ss_pred             cCCCCccccccCCcCccccCHHHHHHhhhccCCC---CCccCCCCCCCCcccCChHHHHHHH
Q psy11069        292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLN---MRMFPCPLVTCGKSFLRSEHLQEHM  350 (391)
Q Consensus       292 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~---~~~~~C~~~~C~~~f~~~~~L~~H~  350 (391)
                      |+++++|+|..  |++.|.+...|..|++. |.+   +++|.|.+  |++.|.+...|..|+
T Consensus         2 h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-h~~~~~~~~~~C~~--C~k~f~~~~~L~~H~   58 (78)
T 2d9h_A            2 SSGSSGLQCEI--CGFTCRQKASLNWHQRK-HAETVAALRFPCEF--CGKRFEKPDSVAAHR   58 (78)
T ss_dssp             CCSCCCEECSS--SCCEESSHHHHHHHHHH-HHHHTTTCCEECTT--TCCEESSHHHHHHHH
T ss_pred             CCCCcCeECCC--CCCeeCCHHHHHHHHHH-hhccCCCcccCCCC--CCchhCCHHHHHHHH
Confidence            34444455544  55555555455555442 332   44455544  555555555555554

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.4e-13  Score=96.00  Aligned_cols=70  Identities=19%  Similarity=0.284  Sum_probs=47.8

Q ss_pred             hhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCC
Q psy11069        252 MASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC  331 (391)
Q Consensus       252 ~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  331 (391)
                      ...|..|+++| .++++|.|++|++.|.....|..        +++|.|..  |++.|.+...|..|++ .|.++++|.|
T Consensus         3 ~~~l~~H~~~h-~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~--C~~~f~~~~~l~~H~~-~H~~~~~~~C   70 (73)
T 2ctu_A            3 SGSSGKRQKIH-LGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEK--CRKDSCQEAALNKDEG-NESGKKTSGP   70 (73)
T ss_dssp             CCSCCCCCCCC-CCCSEEECSSSCCEEECCCCCCC--------SSSCCCHH--HHHTCSCCCSSCCCSS-CCCCCCCSSC
T ss_pred             chhHHHHHHHh-CCCCCeeCCcccchhCCHHHhCc--------CCCCCCCC--CChhhcCHHHHHHHHH-hhcCCCCCCC
Confidence            34566777776 45567777777777776666554        56677766  7777777777777776 4777777777


Q ss_pred             CC
Q psy11069        332 PL  333 (391)
Q Consensus       332 ~~  333 (391)
                      ++
T Consensus        71 ~~   72 (73)
T 2ctu_A           71 SS   72 (73)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=2.1e-11  Score=89.67  Aligned_cols=70  Identities=24%  Similarity=0.305  Sum_probs=42.8

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHH
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQ  347 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~  347 (391)
                      .|.|..|++.|.....|..|++..|.++++..+..  |                     ++|.|.+  |++.|.+...|.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~--c---------------------~~~~C~~--C~k~f~~~~~L~   79 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV--C---------------------YWEECPR--EGKSFKAKYKLV   79 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCC--C---------------------CCTTCSS--TTCCCSSHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccc--e---------------------eccCCCC--CCcccCCHHHHH
Confidence            35566666666666666666552265555422221  2                     1267776  777777777777


Q ss_pred             HHHHHhcCCCCceecc
Q psy11069        348 EHMLQHNENKPKFTCP  363 (391)
Q Consensus       348 ~H~~~h~~~~~~~~C~  363 (391)
                      .|+++|++++| |.|+
T Consensus        80 ~H~~~H~~~k~-~~C~   94 (95)
T 2ej4_A           80 NHIRVHTGEKS-GPSS   94 (95)
T ss_dssp             HHHHHHHTCCC-CSSC
T ss_pred             HHHHhcCCCCC-CCCC
Confidence            77777777773 7774

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.4e-14  Score=100.04  Aligned_cols=71  Identities=20%  Similarity=0.315  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCce
Q psy11069        281 PCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKF  360 (391)
Q Consensus       281 ~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~  360 (391)
                      ...|..|++ +|.++++|.|..  |++.|.+...|..        +++|.|..  |++.|.+...|..|+++|++++ +|
T Consensus         3 ~~~l~~H~~-~h~~~~~~~C~~--C~k~f~~~~~l~~--------~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~-~~   68 (73)
T 2ctu_A            3 SGSSGKRQK-IHLGDRSQKCSK--CGIIFIRRSTLSR--------RKTPMCEK--CRKDSCQEAALNKDEGNESGKK-TS   68 (73)
T ss_dssp             CCSCCCCCC-CCCCCSEEECSS--SCCEEECCCCCCC--------SSSCCCHH--HHHTCSCCCSSCCCSSCCCCCC-CS
T ss_pred             chhHHHHHH-HhCCCCCeeCCc--ccchhCCHHHhCc--------CCCCCCCC--CChhhcCHHHHHHHHHhhcCCC-CC
Confidence            456778877 899999999988  9999999887765        68899997  9999999999999999999999 49


Q ss_pred             eccCcCc
Q psy11069        361 TCPYQDC  367 (391)
Q Consensus       361 ~C~~~~C  367 (391)
                      .|+.  |
T Consensus        69 ~C~~--C   73 (73)
T 2ctu_A           69 GPSS--G   73 (73)
T ss_dssp             SCCC--C
T ss_pred             CCCC--C
Confidence            9987  7

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.18  E-value=2.3e-11  Score=84.44  Aligned_cols=61  Identities=26%  Similarity=0.608  Sum_probs=48.2

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhh
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      +...++|.|.+.+|++.|.....|..|+++|++++ +|.|++.+|++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEK-PFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSC-SEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCC-CccCCCCCCCcccCCHHHHHhHhhcC
Confidence            56677888875568888888888888888888888 48885333888888888888888764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2.8e-11  Score=82.38  Aligned_cols=60  Identities=32%  Similarity=0.537  Sum_probs=47.4

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc-CcCcccccccchhHHHHHHhhcCCCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP-YQDCLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~-~~~C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      ..++++|.|..  |++.|. ...|..|+++ ++++ +|.|+ .  |++.|..++.|..|+++|-+...
T Consensus         5 ~C~~~~~~C~~--C~k~f~-~~~L~~H~~~-~~~~-p~~C~~~--C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTY--CTKEFV-FDTIQSHQYQ-CPRL-PVACPNQ--CGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSS--SCCEEE-HHHHHHHHHH-CSSS-EEECTTC--CSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccc--cCCccC-HHHHHHHHHH-cCCc-CccCCcc--cCcccccHHHHHHHHHhhcccCc
Confidence            45667888887  888888 8888888888 7777 48887 7  88888888888888887766544

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=4.2e-11  Score=88.02  Aligned_cols=63  Identities=24%  Similarity=0.359  Sum_probs=53.2

Q ss_pred             CCeeccCCCCCccccchhhHhccccccCCCCCc--------cccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        236 APYMCDYKGCGKSFYLMASLKSHQRVHVTNPED--------LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       236 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      ..|.|..  |++.|.....|..|+++++.++++        |.|.+|++.|.....|..|++ +|++++||.|.
T Consensus        24 ~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKS--CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCC--CCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHH-HHHTCCCCSSC
T ss_pred             CCCcccc--cccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHH-hcCCCCCCCCC
Confidence            3467875  999999999999999983366566        889999999999999999987 88888999885

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.07  E-value=9.4e-11  Score=73.40  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=38.1

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emk_A            2 SSGS-SGTGEKPYECKE--CGKAFSQTTHLIQHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCSSSCSCBCSS--SCCBCSCHHHHHHHHHHHSSCCC-SSCCC
T ss_pred             CCCC-ccCCCCceECCC--CCchhCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            5777 588899999987  99999999999999999998884 99987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1e-10  Score=73.19  Aligned_cols=44  Identities=27%  Similarity=0.449  Sum_probs=36.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2eq4_A            2 SSGS-SGTGEKLYNCKE--CGKSFSRAPCLLKHERLHSGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CSSCCCCCCBTT--TTBCCSCHHHHHHHHHHCCSSSC-CCCCC
T ss_pred             CCcc-cCCCCCCeECCC--CCCccCchHHHHHHHHhcCCCCC-CCCCC
Confidence            4777 588888888887  88888888888888888888884 88877

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.3e-10  Score=72.76  Aligned_cols=44  Identities=20%  Similarity=0.318  Sum_probs=38.1

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|++  |++.|.+...|..|+++|++++ +|.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~-~~~C~~   45 (46)
T 2eov_A            2 SSGS-SGTGEKPYKCSD--CGKSFTWKSRLRIHQKCHTGER-HSGPSS   45 (46)
T ss_dssp             CCCC-CCSSCCSCBCSS--SCCBCSSHHHHHHHHHHHSCCS-SCCSCC
T ss_pred             CCCC-CCCCCCCccCCc--cChhhCCHHHHHHHHHhcCCCC-CCCCCC
Confidence            4777 588899999997  9999999999999999999888 499987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1e-10  Score=73.27  Aligned_cols=44  Identities=25%  Similarity=0.416  Sum_probs=34.1

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytn_A            2 SSGS-SGTGKKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCSCCSSCBCTT--TCCBCSSHHHHHHHGGGTSCCCC-CSCCC
T ss_pred             CCCc-CCCCCcCeECCC--CCCeeCCHHHHHHHhhhcCCCCC-CCCCC
Confidence            4666 477888888886  88888888888888888888774 88876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.05  E-value=9.9e-11  Score=73.29  Aligned_cols=44  Identities=18%  Similarity=0.305  Sum_probs=35.0

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|++  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2em0_A            2 SSGS-SGMGEKTWKCRE--CDMCFSQASSLRLHQNVHVGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CSCCCCCCCCSS--SCCCCSSHHHHHHHGGGGSSSSC-SCSSC
T ss_pred             CCcC-ccCCCcCeECCC--CCcccCCHHHHHHHHHHcCCCCC-cCCCC
Confidence            4666 488888888886  88888888888888888888874 88876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=7.5e-11  Score=80.24  Aligned_cols=57  Identities=21%  Similarity=0.411  Sum_probs=33.7

Q ss_pred             CCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCC-CCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        294 STKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCP-LVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       294 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~-~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      +.+||.|..  |++.|. ...|..|+++  .+++||.|+ .  |++.|.....|..|+++|....
T Consensus         7 ~~~~~~C~~--C~k~f~-~~~L~~H~~~--~~~~p~~C~~~--C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            7 GKRTQPCTY--CTKEFV-FDTIQSHQYQ--CPRLPVACPNQ--CGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCEEECSS--SCCEEE-HHHHHHHHHH--CSSSEEECTTC--CSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCeeccc--cCCccC-HHHHHHHHHH--cCCcCccCCcc--cCcccccHHHHHHHHHhhcccC
Confidence            455666655  666666 6666666653  555666665 5  6666666666666666655443

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.3e-10  Score=72.73  Aligned_cols=44  Identities=25%  Similarity=0.435  Sum_probs=37.1

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|++  |++.|.+...|..|+++|++++ +|.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k-~~~C~~   45 (46)
T 2eoq_A            2 SSGS-SGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTAEK-PSGPSS   45 (46)
T ss_dssp             CCCC-CSSSSCSCCCSS--SCCCCSSHHHHHHHHHHTTCCC-SSSCCC
T ss_pred             CCCC-CCCCCCCcCCCc--CCchhCCHHHHHHHHHHcCCCC-CCCCCC
Confidence            4777 588888899987  9999999999999998888888 488877

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1e-10  Score=73.19  Aligned_cols=44  Identities=32%  Similarity=0.470  Sum_probs=37.3

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emm_A            2 SSGS-SGTGERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCS-CSSCCCSEECSS--SCCEESSHHHHHHHHHHHSCCCT-TSSSC
T ss_pred             CCcC-CcCCCCCeeCCC--CChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4777 588888999987  99999999999999999988884 88887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.8e-11  Score=73.78  Aligned_cols=44  Identities=30%  Similarity=0.436  Sum_probs=38.2

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eoo_A            2 SSGS-SGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFREKS-SGPSS   45 (46)
T ss_dssp             CCCC-CCSCCCCEECSS--SCCEESSHHHHHHHHHHHHSTTS-SCCSC
T ss_pred             CCCC-CCCCCCCEEccc--cCcccCCHHHHHHHHHHHcCCCC-CCCCC
Confidence            5777 588999999997  99999999999999999998884 99987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1e-10  Score=73.26  Aligned_cols=44  Identities=23%  Similarity=0.390  Sum_probs=37.9

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emp_A            2 SSGS-SGTGVKPYMCNE--CGKAFSVYSSLTTHQVIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCS-CSSCCCSEECSS--SCCEESCHHHHHHHHHHHHCCSC-CSCCC
T ss_pred             Cccc-ccCCCcCeECCC--CCchhCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            4777 588889999987  99999999999999999998884 99987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1e-10  Score=73.27  Aligned_cols=44  Identities=23%  Similarity=0.426  Sum_probs=35.7

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|++  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2eml_A            2 SSGS-SGTGEKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCSSCCSEECSS--SCCEESSHHHHHHHHGGGSSCCC-SCSSC
T ss_pred             CccC-CcCCCCCeeCCC--cCCccCCHHHHHHHHHHhcCCCC-CCCCC
Confidence            4677 588888888887  88888888888888888888884 88876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.1e-10  Score=72.98  Aligned_cols=44  Identities=23%  Similarity=0.293  Sum_probs=35.2

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eop_A            2 SSGS-SGTGEKPHECRE--CGKSFSFNSQLIVHQRIHTGENP-SGPSS   45 (46)
T ss_dssp             CCCC-SCCCCCSCBCTT--TCCBCSSHHHHHHHHTTTTTSCC-SCCCC
T ss_pred             CCcc-ccCCCCCeeCCC--CCchhCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            4666 488888888887  88888888888888888888884 88876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1e-10  Score=73.22  Aligned_cols=44  Identities=25%  Similarity=0.378  Sum_probs=37.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emy_A            2 SSGS-SGTGENPYECHE--CGKAFSRKYQLISHQRTHAGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCCSSCCEECSS--SCCEESSHHHHHHHHHHHTTSCC-SCSSC
T ss_pred             CCCC-CCCCCcCcCCCC--CCcccCcHHHHHHHHHHcCCCCC-CCCCC
Confidence            4777 588888999987  99999999999999999988884 98887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.04  E-value=1.5e-10  Score=72.47  Aligned_cols=44  Identities=25%  Similarity=0.338  Sum_probs=37.9

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|+++++|.|.+  |++.|.+...|.+|+++|++++ +|.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k-~~~C~~   45 (46)
T 2ely_A            2 SSGS-SGTGEKPFKCVE--CGKGFSRRSALNVHHKLHTGEK-PSGPSS   45 (46)
T ss_dssp             CCCC-CCCCCCSBCCSS--SCCCBSSTTHHHHHHHHHSCCS-SCSCCC
T ss_pred             CCCC-CCCCCCCcccCc--cCcccCCHHHHHHHHHHcCCCC-CCCCCC
Confidence            3677 588899999997  9999999999999999999888 499987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.3e-10  Score=71.93  Aligned_cols=43  Identities=26%  Similarity=0.349  Sum_probs=35.4

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         1 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   43 (44)
T 2emx_A            1 GSS-GSSGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKP-SGPSS   43 (44)
T ss_dssp             CCC-CCSSCCCEECSS--SSCEESSHHHHHHHHHHHTSSCS-CSCCC
T ss_pred             CCC-CcCCCcCccCCC--CCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            556 588888888887  88888888888888888888884 88877

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1e-10  Score=73.19  Aligned_cols=44  Identities=23%  Similarity=0.352  Sum_probs=35.0

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|.+|+++|++++ +|.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~-~~~C~~   45 (46)
T 2eoe_A            2 SSGS-SGTGEKPYKCNE--CGKVFTQNSHLANHQRIHTGVK-PSGPSS   45 (46)
T ss_dssp             CCSS-CCCCCCSSEETT--TTEECSSHHHHHHHHGGGSCCC-SCSSCC
T ss_pred             CCCC-CCCCCCCeECCC--cChhhCCHHHHHHHHHHcCCCC-CCCCCC
Confidence            4666 488888888887  8888888888888888888887 488876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=72.81  Aligned_cols=44  Identities=27%  Similarity=0.467  Sum_probs=37.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2ytd_A            2 SSGS-SGSGEKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRP-SGPSS   45 (46)
T ss_dssp             CCCC-CSCCCCSEECSS--SCCEESSHHHHHHHHHHHTCCCS-SCSSC
T ss_pred             CCcc-ccCCCcCeECCC--CCCeeCChHHHHHHHHHcCCCCC-CCCCC
Confidence            4777 588888999987  99999999999999999988884 99987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.4e-10  Score=72.63  Aligned_cols=44  Identities=23%  Similarity=0.407  Sum_probs=35.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2ytr_A            2 SSGS-SGTGEKPYKCNE--CGKAFSQTSKLARHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CSSC-CCSSCCTTCCTT--TCCCCSSHHHHHHHHTTTTTCSC-CCSCC
T ss_pred             CCCc-CCCCCcCcCCCC--CCCccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            4676 588888888887  88888888888888888888884 88877

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=72.75  Aligned_cols=44  Identities=23%  Similarity=0.377  Sum_probs=35.3

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|++
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytj_A            2 SSGS-SGTGEKPYICAE--CGKAFTIRSNLIKHQKIHTKQKP-SGPSS   45 (46)
T ss_dssp             CSSC-TTSSCCSEECSS--SCCEESSHHHHHHHHHHTSCCCC-SSCSC
T ss_pred             Cccc-CCCCCcCeECCC--CChhhCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            4677 488888888887  88888888888888888888884 88876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.6e-10  Score=72.30  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=34.6

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|.++++|.|.+  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2epz_A            3 SGS-SGTGEKPFDCID--CGKAFSDHIGLNQHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCS-SCCCCCSBCCTT--TCCCBSSHHHHHHHHTTTTTCCC-CSSCC
T ss_pred             CCC-CcCCCCCeECCC--CCceeCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            666 488888888887  88888888888888888888874 88876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.1e-10  Score=73.11  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=37.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emh_A            2 SSGS-SGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-SCSCCCSEECTT--TCCEESSHHHHHHHHHHHHCSSC-SSSCC
T ss_pred             CCCC-CCCCCCCcCCCC--CCchhCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            4777 588889999987  99999999999999999988884 98887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.2e-10  Score=72.84  Aligned_cols=44  Identities=25%  Similarity=0.433  Sum_probs=36.8

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2ytk_A            2 SSGS-SGSGEKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CSSSSCSEECSS--SCCEESSHHHHHHHHHHHSSSSC-SSCCC
T ss_pred             CCcc-cCCCCCCEeCCc--CCCccCCHHHHHHHHHHHCCCCC-CCCCC
Confidence            4777 588888888887  88888888888888888888884 88877

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.03  E-value=1.2e-10  Score=72.88  Aligned_cols=44  Identities=25%  Similarity=0.434  Sum_probs=35.3

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ema_A            2 SSGS-SGTGEKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKP-SGPSS   45 (46)
T ss_dssp             CSCS-SCTTSCCEECSS--SCCEESSHHHHHHHHTGGGCCCC-CSSSC
T ss_pred             CCcc-CCCCCcCcCCCC--CcchhCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            4666 488888888887  88888888888888888888884 88876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.03  E-value=9.6e-11  Score=73.33  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2el4_A            2 SSGS-SGTGVKPYGCSQ--CAKTFSLKSQLIVHQRSHTGVKP-SGPSS   45 (46)
T ss_dssp             CCCC-CSCCCCSEECSS--SSCEESSHHHHHHHGGGSSSCCC-SCCTT
T ss_pred             cccc-CCCCCCceECCC--CCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4666 477777777776  77777777777777777777773 77766

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.03  E-value=5.4e-10  Score=77.35  Aligned_cols=62  Identities=27%  Similarity=0.483  Sum_probs=53.3

Q ss_pred             CCCCCCceecCCCCCCCcccChHHHHHHHHhcCCCCcccCccCCCCCCccccccCCHHHHHHHHhhc
Q psy11069        104 NSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH  170 (391)
Q Consensus       104 ~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h  170 (391)
                      .....++|.|.+..|++.|.....|..|+++|+++++|.|.+.     .|++.|.....|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~-----~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWK-----GCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCT-----TCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCC-----CCCcccCCHHHHHhHhhcC
Confidence            4456789999865699999999999999999999999999521     1999999999999999875

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.8e-10  Score=72.03  Aligned_cols=43  Identities=21%  Similarity=0.266  Sum_probs=34.9

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         3 h~~-~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2elz_A            3 SGS-SGSVEKPYKCED--CGKGYNRRLNLDMHQRVHMGEKT-SGPSS   45 (46)
T ss_dssp             CCS-CCCCCSSCBCSS--SCCBCSSHHHHHHHGGGGGSCCC-CCSCC
T ss_pred             CCC-CCCCCCCeeCcc--cCchhCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            666 588888888887  88888888888888888888884 88876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.9e-10  Score=71.96  Aligned_cols=43  Identities=19%  Similarity=0.330  Sum_probs=37.6

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|.++++|.|.+  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         3 h~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2ytm_A            3 SGS-SGTGEKPYKCME--CGKAFGDNSSCTQHQRLHTGQRP-SGPSS   45 (46)
T ss_dssp             SCC-CCSSCCSSSBTT--TTBCCSSHHHHHHHHHHHHSCCC-CCCCC
T ss_pred             CCc-CCCCCCCcCCCC--CCchhCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            666 588999999997  99999999999999999999884 99987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.9e-10  Score=71.94  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=33.8

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|.++++|.|.+  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytq_A            3 SGS-SGAGEKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKP-SGPSS   45 (46)
T ss_dssp             CSS-CSSCCCSCBCSS--SCCBCSCHHHHHHHHTTTCCSCS-SCCCC
T ss_pred             CCc-CcCCCCCcCCCc--cChhhCChHHHHHHHHHhCCCCC-CCCCC
Confidence            666 478888888886  88888888888888888888774 88876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=73.12  Aligned_cols=44  Identities=23%  Similarity=0.401  Sum_probs=33.9

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2em5_A            2 SSGS-SGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCCCSCSEECSS--SCCEESSHHHHHHHHTTTSCSCC-SSCCC
T ss_pred             CCcC-CCCCCCCeECCc--CCCccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4666 477788888886  88888888888888888887774 88876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.5e-10  Score=72.50  Aligned_cols=44  Identities=23%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|++  |++.|.+...|..|+++|++++ +|.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k-~~~C~~   45 (46)
T 2ep2_A            2 SSGS-SGTGEKPYECSI--CGKSFTKKSQLHVHQQIHTGEK-PSGPSS   45 (46)
T ss_dssp             CSSS-CSSCCCSEECSS--SCCEESSHHHHHHHHHTTSSCC-SCCSCC
T ss_pred             CCCC-CCCCCcCcCCCC--CCcccCCHHHHHHHHHHhCCCC-CCCCCC
Confidence            4666 478888888887  8888888888888888888887 488876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.2e-10  Score=72.81  Aligned_cols=44  Identities=23%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|++  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ene_A            2 SSGS-SGTGEKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCS-SCCCSSSEECSS--SCCEESSHHHHHHHHTTTCCCCC-CSCCC
T ss_pred             Cccc-CCCCCCCeECCC--CCchhCChHHHHHHHhhcCCCCC-CCCCC
Confidence            3666 477778888876  88888888888888888877774 88876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.2e-10  Score=72.82  Aligned_cols=44  Identities=30%  Similarity=0.496  Sum_probs=33.5

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|++
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq0_A            2 SSGS-SGTGEKPYKCHE--CGKVFRRNSHLARHQLIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CTTCCCCEECTT--TCCEESSHHHHHHHHTTTCCCCC-SCCSC
T ss_pred             CCCc-CCCCCCCeECCC--CCchhCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            3666 477778888876  88888888888888888887774 88876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.6e-10  Score=72.34  Aligned_cols=44  Identities=25%  Similarity=0.362  Sum_probs=34.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|++  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2eme_A            2 SSGS-SGSGEKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-TTCCCCSEECSS--SCCEESSHHHHHHHHGGGCCCSC-CSSCC
T ss_pred             CCCC-CCCCCCCeECCC--CChhhCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            4666 478888888887  88888888888888888888874 88876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.01  E-value=3e-10  Score=71.05  Aligned_cols=44  Identities=30%  Similarity=0.431  Sum_probs=28.4

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||+|+.
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emk_A            2 SSGSSG-TGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC-SSSCSCBCSSSCCBCSCHHHHHHHHH-HHSSCCCSSCCC
T ss_pred             CCCCcc-CCCCceECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            456666 44566666666666666666666665 666666666654

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.1e-10  Score=73.06  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=37.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2yu8_A            2 SSGS-SGTGEKPYKCNE--CGKVFTQNSHLARHRRVHTGGKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCCCCSSEECSS--SCCEESSSHHHHHHTHHHHSCCC-SCSCC
T ss_pred             CcCc-CCCCCCCeECCc--CCchhCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            4777 588889999987  99999999999999999988884 99887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=72.53  Aligned_cols=43  Identities=28%  Similarity=0.437  Sum_probs=30.6

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|.++++|.|.+  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emf_A            3 SGS-SGTGGKHFECTE--CGKAFTRKSTLSMHQKIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCS-SSSSSCCEECSS--SCCEESCHHHHHHHGGGTSCSSC-SCCCC
T ss_pred             ccc-ccCCCCCeECCC--CCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            565 477777777776  77777777777777777777773 77765

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.5e-10  Score=72.42  Aligned_cols=44  Identities=20%  Similarity=0.279  Sum_probs=36.4

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|++  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2epw_A            2 SSGS-SGTGEKPCKCTE--CGKAFCWKSQLIMHQRTHVDDKH-SGPSS   45 (46)
T ss_dssp             CCCC-CCCCCCSEECSS--SCCEESSSHHHHHHHHHCCSCCC-SCCCC
T ss_pred             cCcc-cCCCCCCeeCCC--CCCccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4777 588888888887  88888888888888888888884 88877

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.3e-10  Score=72.68  Aligned_cols=44  Identities=20%  Similarity=0.212  Sum_probs=34.2

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|++  |++.|.+...|..|+++|++++ +|.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k-~~~C~~   45 (46)
T 2en8_A            2 SSGS-SGSGEKSHTCDE--CGKNFCYISALRIHQRVHMGEK-CSGPSS   45 (46)
T ss_dssp             CCCC-CCCCCSSEECTT--TCCEESSHHHHHHHHTTTCCSC-SSCCSC
T ss_pred             Cccc-cCCCCCCeECCC--cCcccCCHHHHHHHHHHhCCCC-CCCCCC
Confidence            4666 477888888886  8888888888888888888877 488876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.2e-10  Score=70.89  Aligned_cols=43  Identities=23%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+.
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytn_A            3 SGSSG-TGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-SCCSSCBCTTTCCBCSSHHHHHHHGG-GTSCCCCCSCCC
T ss_pred             CCcCC-CCCcCeECCCCCCeeCCHHHHHHHhh-hcCCCCCCCCCC
Confidence            44444 33445555555555555555555544 455555555543

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=2.3e-10  Score=74.35  Aligned_cols=46  Identities=24%  Similarity=0.499  Sum_probs=32.5

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHH-HhcCCCCceeccCcCccccccc
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHML-QHNENKPKFTCPYQDCLMSYVA  373 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~~~~C~~~~C~~~f~~  373 (391)
                      |.++++|.|.+  |++.|.+...|.+|++ +|++++ +|.|+.  |++.|.+
T Consensus         7 ~~~~k~~~C~~--C~k~f~~~~~L~~H~~~~H~~~k-~~~C~~--C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSER-PHKCQV--WVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSS--SCCEESSHHHHHHHHHHTSCCCC-CCCSSS--SCCSSCC
T ss_pred             CCCCCCeECCC--CCcccCCHHHHHHHHHHhcCCCC-CccCCC--CCCCCCC
Confidence            56667777776  7777777777777775 677766 377776  7777764

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.7e-10  Score=72.17  Aligned_cols=43  Identities=23%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|.++++|.|++  |++.|.+...|..|+++|++++| |.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em7_A            3 SGS-SGTGEKPYKCEE--CGKGFICRRDLYTHHMVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCC-SSSCCCSEECSS--SCCEESCHHHHHHHGGGGTTCCC-SSTTC
T ss_pred             CCC-CCCCCcCccCCC--ccchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            566 477777777776  77777777777777777777774 77776

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.4e-10  Score=70.75  Aligned_cols=44  Identities=27%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||.|..
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eq4_A            2 SSGSSG-TGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCS-SCCCCCCBTTTTBCCSCHHHHHHHHH-HCCSSSCCCCCC
T ss_pred             CCcccC-CCCCCeECCCCCCccCchHHHHHHHH-hcCCCCCCCCCC
Confidence            355555 44456666666666666666666655 566666666654

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.5e-10  Score=70.72  Aligned_cols=44  Identities=30%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+.
T Consensus         2 ~H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoq_A            2 SSGSSG-TGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPSS   45 (46)
T ss_dssp             CCCCCS-SSSCSCCCSSSCCCCSSHHHHHHHHH-HTTCCCSSSCCC
T ss_pred             CCCCCC-CCCCCcCCCcCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            355555 44566666666666666666666655 566666666654

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.7e-10  Score=70.61  Aligned_cols=44  Identities=30%  Similarity=0.451  Sum_probs=29.0

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|.+++||+|..
T Consensus         2 ~H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eov_A            2 SSGSSG-TGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCC-SSCCSCBCSSSCCBCSSHHHHHHHHH-HHSCCSSCCSCC
T ss_pred             CCCCCC-CCCCCccCCccChhhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            466666 44566777777777777777777765 666667777654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=2.4e-10  Score=71.46  Aligned_cols=44  Identities=20%  Similarity=0.276  Sum_probs=37.0

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yso_A            2 SSGS-SGSREKSHQCRE--CGEIFFQYVSLIEHQVLHMGQKN-SGPSS   45 (46)
T ss_dssp             CCSC-CSSCCCCEECTT--TCCEESSHHHHHHHHHHHSCCSC-CCTTC
T ss_pred             Cccc-ccCCCCCEEccc--cChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            3666 588888899987  99999999999999999988884 88877

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.00  E-value=3.3e-10  Score=70.83  Aligned_cols=43  Identities=21%  Similarity=0.286  Sum_probs=22.4

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+.
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em0_A            3 SGSSG-MGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGPSS   45 (46)
T ss_dssp             CCCCS-CCCCCCCCSSSCCCCSSHHHHHHHGG-GGSSSSCSCSSC
T ss_pred             CcCcc-CCCcCeECCCCCcccCCHHHHHHHHH-HcCCCCCcCCCC
Confidence            44444 33455555555555555555555544 455555555543

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.00  E-value=1.6e-10  Score=72.24  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2em9_A            2 SSGS-SGTGEKPYNCKE--CGKSFRWASCLLKHQRVHSGEKP-SGPSS   45 (46)
T ss_dssp             CSCC-SCCCCCSEECSS--SCCEESSHHHHHHHGGGGTSCCC-CSTTC
T ss_pred             CCCC-CCCCCcCeECCc--cccccCChHHHHHHHHHhCCCCC-CCCCC
Confidence            3666 477777777776  77777777777777777777773 77776

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.5e-10  Score=72.38  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=36.4

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~h~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2en6_A            2 SSGS-SGSGEKPYGCNE--CGKTFSQKSILSAHQRTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCSC-CCCSSCCEEETT--TTEEESSHHHHHHHHHHHSSCCC-SSSCC
T ss_pred             CCCC-ccCCCcCeECCC--CCcccCchHHHHHHHHHcCCCCC-CCCCC
Confidence            4666 588888888887  88888888888888888888884 88877

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.2e-10  Score=70.86  Aligned_cols=43  Identities=23%  Similarity=0.400  Sum_probs=24.2

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|+.
T Consensus         3 H~~~H-~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eoe_A            3 SGSSG-TGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPSS   45 (46)
T ss_dssp             CSSCC-CCCCSSEETTTTEECSSHHHHHHHHG-GGSCCCSCSSCC
T ss_pred             CCCCC-CCCCCeECCCcChhhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55555 34455666666666666666666654 555555555544

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.5e-10  Score=71.41  Aligned_cols=43  Identities=23%  Similarity=0.391  Sum_probs=34.0

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         3 h~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2enc_A            3 SGS-SGSGEKPFKCEE--CGKGFYTNSQCYSHQRSHSGEKP-SGPSS   45 (46)
T ss_dssp             CSS-CCCCCCSEECSS--SCCEESSHHHHHHHHHHSCCSSC-CSSCC
T ss_pred             CCC-CCCCCCCcCCCC--CCCcCCChHHHHHHHHHhCCCCC-CCCCC
Confidence            566 478888888886  88888888888888888888874 88876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.2e-10  Score=70.90  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=23.4

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|..
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eml_A            3 SGSSG-TGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGPSS   45 (46)
T ss_dssp             CCCCC-SSCCSEECSSSCCEESSHHHHHHHHG-GGSSCCCSCSSC
T ss_pred             ccCCc-CCCCCeeCCCcCCccCCHHHHHHHHH-HhcCCCCCCCCC
Confidence            45555 34455555555555555555555554 555555555544

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.9e-10  Score=72.00  Aligned_cols=44  Identities=23%  Similarity=0.377  Sum_probs=32.8

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2ep3_A            2 SSGS-SGTGEKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCS-SSSCCCSEECSS--SCCEESSHHHHHHHHTTTTTSCC-CCTTC
T ss_pred             CCCC-CCCCCCCeECCC--CCchhCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            4666 477777778876  88888887888888777777774 77765

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.6e-10  Score=72.27  Aligned_cols=44  Identities=25%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2en1_A            2 SSGS-SGSGEKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CSTT-CCCCCCSEEETT--TTEEESSHHHHHHHGGGGSCCCC-SCCCC
T ss_pred             Cccc-CCCCCCCeeCCC--CCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            4666 477777777776  77777777777777777777773 77766

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.99  E-value=2.4e-10  Score=71.53  Aligned_cols=43  Identities=23%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         3 h~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2el6_A            3 SGS-SGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTREKP-SGPSS   45 (46)
T ss_dssp             SCC-SSCCCCSEECSS--SSCEESSHHHHHHHHGGGCCSSC-CSCCC
T ss_pred             CCC-CCCCCCCeECCC--CCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            555 477888888886  88888888888888888888774 88876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.8e-10  Score=70.51  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+.
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eop_A            3 SGSSG-TGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCCSC-CCCCSCBCTTTCCBCSSHHHHHHHHT-TTTTSCCSCCCC
T ss_pred             Ccccc-CCCCCeeCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            44444 33455555555555555555555544 455555555543

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.3e-10  Score=70.81  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emm_A            2 SSGSSG-TGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCS-SCCCSEECSSSCCEESSHHHHHHHHH-HHSCCCTTSSSC
T ss_pred             CCcCCc-CCCCCeeCCCCChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            355555 34456666666666666666666655 566666666654

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.98  E-value=3.1e-10  Score=70.94  Aligned_cols=40  Identities=25%  Similarity=0.381  Sum_probs=19.3

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|++++||.|..  |++.|.+...|..|++ .|.+++||.|++
T Consensus         6 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2el4_A            6 SGTGVKPYGCSQ--CAKTFSLKSQLIVHQR-SHTGVKPSGPSS   45 (46)
T ss_dssp             CSCCCCSEECSS--SSCEESSHHHHHHHGG-GSSSCCCSCCTT
T ss_pred             CCCCCCceECCC--CCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            444444555544  5555555555555544 244444555443

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.8e-10  Score=71.21  Aligned_cols=44  Identities=20%  Similarity=0.252  Sum_probs=37.9

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCc
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC  367 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C  367 (391)
                      |++ .|.++++|.|++  |++.|.+...|..|+++|++++| |.|+.  |
T Consensus         3 h~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~--C   46 (46)
T 2em8_A            3 SGS-SGSGEKPYKCVE--CGKGYKRRLDLDFHQRVHTGEKL-SGPSS--G   46 (46)
T ss_dssp             CCC-CCCSCCSEECSS--SCCEESSHHHHHHHHHHHHCCCC-CCSCC--C
T ss_pred             CCC-CCCCCCCeECcc--cCchhCCHHHHHHHHHHHcCCCC-CCCCC--C
Confidence            666 588899999987  99999999999999999998884 99987  7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.1e-10  Score=70.40  Aligned_cols=43  Identities=23%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||.|..
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytr_A            3 SGSSG-TGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCC-SSCCTTCCTTTCCCCSSHHHHHHHHT-TTTTCSCCCSCC
T ss_pred             CCcCC-CCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            44555 34455555555555555555555544 555555555544

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.1e-10  Score=73.08  Aligned_cols=44  Identities=27%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytg_A            2 SSGS-SGTGEKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCSSCCSEECTT--TCCEESSSHHHHTTGGGGSSCCS-SCSCC
T ss_pred             CCCC-CCCCCCCeECCC--CCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            3666 477777777776  77777777777777777777773 77766

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.3e-10  Score=70.81  Aligned_cols=44  Identities=25%  Similarity=0.370  Sum_probs=27.2

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||+|+.
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emy_A            2 SSGSSG-TGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC-CSSCCEECSSSCCEESSHHHHHHHHH-HHTTSCCSCSSC
T ss_pred             CCCCCC-CCCcCcCCCCCCcccCcHHHHHHHHH-HcCCCCCCCCCC
Confidence            355555 44456666666666666666666655 566666666654

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.98  E-value=4.3e-10  Score=70.31  Aligned_cols=43  Identities=26%  Similarity=0.361  Sum_probs=28.6

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ely_A            3 SGSSG-TGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-CCCCSBCCSSSCCCBSSTTHHHHHHH-HHSCCSSCSCCC
T ss_pred             CCCCC-CCCCCcccCccCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            56666 45566777777777777777777765 666667777654

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.1e-10  Score=70.38  Aligned_cols=43  Identities=26%  Similarity=0.461  Sum_probs=22.8

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+.
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytj_A            3 SGSSG-TGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGPSS   45 (46)
T ss_dssp             SSCTT-SSCCSEECSSSCCEESSHHHHHHHHH-HTSCCCCSSCSC
T ss_pred             cccCC-CCCcCeECCCCChhhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            44554 33455555555555555555555554 555555555543

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3.2e-10  Score=70.88  Aligned_cols=43  Identities=19%  Similarity=0.435  Sum_probs=21.0

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em5_A            3 SGSSG-SSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-CCSCSEECSSSCCEESSHHHHHHHHT-TTSCSCCSSCCC
T ss_pred             CcCCC-CCCCCeECCcCCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            44444 33345555555555555555555544 455555555543

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.8e-10  Score=71.20  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoo_A            2 SSGSSG-SGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGPSS   45 (46)
T ss_dssp             CCCCCC-SCCCCEECSSSCCEESSHHHHHHHHH-HHHSTTSSCCSC
T ss_pred             CCCCCC-CCCCCEEccccCcccCCHHHHHHHHH-HHcCCCCCCCCC
Confidence            455555 44556666666666666666666655 566666666654

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.9e-10  Score=70.52  Aligned_cols=43  Identities=23%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+.
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep2_A            3 SGSSG-TGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCS-SCCCSEECSSSCCEESSHHHHHHHHH-TTSSCCSCCSCC
T ss_pred             CCCCC-CCCcCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            44444 33445555555555555555555544 455555555543

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.1e-10  Score=70.99  Aligned_cols=44  Identities=27%  Similarity=0.408  Sum_probs=25.5

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||+|+.
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emp_A            2 SSGSSG-TGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCS-SCCCSEECSSSCCEESCHHHHHHHHH-HHHCCSCCSCCC
T ss_pred             Cccccc-CCCcCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            355555 34455666666666666666666655 566666666654

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.8e-10  Score=70.55  Aligned_cols=44  Identities=25%  Similarity=0.323  Sum_probs=26.0

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      .|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+.
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2epw_A            2 SSGSSG-TGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCC-CCCCSEECSSSCCEESSSHHHHHHHH-HCCSCCCSCCCC
T ss_pred             cCcccC-CCCCCeeCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            355555 34456666666666666666666655 566666666654

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=4e-10  Score=69.68  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=21.5

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|..
T Consensus         1 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   43 (44)
T 2emx_A            1 GSSGS-SGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGPSS   43 (44)
T ss_dssp             CCCCC-SSCCCEECSSSSCEESSHHHHHHHHH-HHTSSCSCSCCC
T ss_pred             CCCCc-CCCcCccCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            33444 33445555555555555555555544 455555555543

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=4.2e-10  Score=70.35  Aligned_cols=44  Identities=23%  Similarity=0.406  Sum_probs=26.2

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||+|+.
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytd_A            2 SSGSSG-SGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPSS   45 (46)
T ss_dssp             CCCCCS-CCCCSEECSSSCCEESSHHHHHHHHH-HHTCCCSSCSSC
T ss_pred             CCcccc-CCCcCeECCCCCCeeCChHHHHHHHH-HcCCCCCCCCCC
Confidence            355555 34456666666666666666666655 566666666654

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.8e-10  Score=70.52  Aligned_cols=42  Identities=24%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|.
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eq0_A            3 SGSSG-TGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCCT-TCCCCEECTTTCCEESSHHHHHHHHT-TTCCCCCSCCS
T ss_pred             CCcCC-CCCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCC
Confidence            44444 33344555555555555555555543 44444444443

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.7e-10  Score=70.60  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|++++||.|..  |++.|.+...|..|++ .|.++++|.|++
T Consensus         6 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ene_A            6 SGTGEKPYKCNE--CGKVFRHNSYLSRHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCSSSEECSS--SCCEESSHHHHHHHHT-TTCCCCCCSCCC
T ss_pred             CCCCCCCeECCC--CCchhCChHHHHHHHh-hcCCCCCCCCCC
Confidence            444444555544  5555555555555544 244444555443

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.96  E-value=3.8e-10  Score=70.52  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2ema_A            3 SGSSG-TGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPS   44 (46)
T ss_dssp             SCSSC-TTSCCEECSSSCCEESSHHHHHHHHT-GGGCCCCCSSS
T ss_pred             CccCC-CCCcCcCCCCCcchhCCHHHHHHHHH-hcCCCCCCCCC
Confidence            44444 33445555555555555555555544 45555555554

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4e-10  Score=70.45  Aligned_cols=40  Identities=30%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|++++||.|..  |++.|.+...|..|++ .|.++++|.|++
T Consensus         6 ~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emf_A            6 SGTGGKHFECTE--CGKAFTRKSTLSMHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSCCEECSS--SCCEESCHHHHHHHGG-GTSCSSCSCCCC
T ss_pred             ccCCCCCeECCC--CCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            455555555544  5555555555555555 355555555543

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.9e-10  Score=70.48  Aligned_cols=44  Identities=27%  Similarity=0.458  Sum_probs=36.5

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|++
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em2_A            2 SSGS-SGSGEKPFKCKE--CGKAFRQNIHLASHLRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-SCCCCCSEECSS--SCCEESSHHHHHHHHHHHCCCCS-SCSSC
T ss_pred             CCCC-CCCCCCCEECCc--CCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            3666 588888888887  88888888888888888888884 88876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5e-10  Score=69.98  Aligned_cols=43  Identities=23%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|+.
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2epz_A            3 SGSSG-TGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSC-CCCCSBCCTTTCCCBSSHHHHHHHHT-TTTTCCCCSSCC
T ss_pred             CCCCc-CCCCCeECCCCCceeCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            44444 33345555555555555555555544 455555555543

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.5e-10  Score=70.20  Aligned_cols=43  Identities=23%  Similarity=0.427  Sum_probs=21.0

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||+|..
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eme_A            3 SGSSG-SGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCTT-CCCCSEECSSSCCEESSHHHHHHHHG-GGCCCSCCSSCC
T ss_pred             CCCCC-CCCCCeECCCCChhhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            44444 33345555555555555555555544 455555555543

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.4e-10  Score=70.78  Aligned_cols=44  Identities=27%  Similarity=0.402  Sum_probs=26.4

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|.+++||.|+.
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emh_A            2 SSGSSG-TGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSC-SCCCSEECTTTCCEESSHHHHHHHHH-HHHCSSCSSSCC
T ss_pred             CCCCCC-CCCCCcCCCCCCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            355555 44456666666666666666666655 566666666654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.5e-10  Score=69.81  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=22.2

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|..
T Consensus         3 h~~~h-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2elz_A            3 SGSSG-SVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGPSS   45 (46)
T ss_dssp             CCSCC-CCCSSCBCSSSCCBCSSHHHHHHHGG-GGGSCCCCCSCC
T ss_pred             CCCCC-CCCCCeeCcccCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            44444 33445555555555555555555544 455555555543

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=71.74  Aligned_cols=43  Identities=19%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      |++ .|.++++|.|++  |++.|.+...|.+|+++|++++| |.|+.
T Consensus         3 H~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2ysp_A            3 SGS-SGTGEKPYKCEK--CGKGYNSKFNLDMHQKVHTGERP-SGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSEEETT--TTEEESCHHHHHHHHTTSCSCCS-SCCSC
T ss_pred             CCc-CCCCCCCeECCC--CCCccCCHHHHHHHHHhhCCCCC-CCCCC
Confidence            555 477777777776  77777777777777777777773 77766

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.2e-10  Score=70.36  Aligned_cols=43  Identities=21%  Similarity=0.439  Sum_probs=24.2

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+.
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytk_A            3 SGSSG-SGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCS-SSSCSEECSSSCCEESSHHHHHHHHH-HHSSSSCSSCCC
T ss_pred             CcccC-CCCCCEeCCcCCCccCCHHHHHHHHH-HHCCCCCCCCCC
Confidence            55555 34455666666666666666666654 555555555544

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=5.2e-10  Score=72.60  Aligned_cols=47  Identities=23%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             cCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCC
Q psy11069        292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLR  342 (391)
Q Consensus       292 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~  342 (391)
                      |.+++||.|..  |++.|.....|.+|++..|.++++|.|.+  |++.|.+
T Consensus         7 ~~~~k~~~C~~--C~k~f~~~~~L~~H~~~~H~~~k~~~C~~--C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSS--SCCEESSHHHHHHHHHHTSCCCCCCCSSS--SCCSSCC
T ss_pred             CCCCCCeECCC--CCcccCCHHHHHHHHHHhcCCCCCccCCC--CCCCCCC
Confidence            44555666655  66666666666666543355566666665  6666553

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4e-10  Score=70.41  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=21.2

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en8_A            3 SGSSG-SGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCC-CCCSSEECTTTCCEESSHHHHHHHHT-TTCCSCSSCCSC
T ss_pred             ccccC-CCCCCeECCCcCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            44444 33345555555555555555555544 455555555543

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.7e-10  Score=69.72  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=19.7

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|.
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2ytq_A            3 SGSSG-AGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGPS   44 (46)
T ss_dssp             CSSCS-SCCCSCBCSSSCCBCSCHHHHHHHHT-TTCCSCSSCCC
T ss_pred             CCcCc-CCCCCcCCCccChhhCChHHHHHHHH-HhCCCCCCCCC
Confidence            34444 33344555555555555555555543 44444444444

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.4e-10  Score=70.59  Aligned_cols=44  Identities=23%  Similarity=0.412  Sum_probs=35.5

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHH-HhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML-QHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|++ +|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~~~k~-~~C~~   46 (47)
T 2epx_A            2 SSGS-SGTGKKPYECIE--CGKAFIQNTSLIRHWRYYHTGEKP-SGPSS   46 (47)
T ss_dssp             CCCC-CCCCCCSBCCSS--SCCCBSSHHHHHHHHTTTTTTSCS-SSCCC
T ss_pred             cccc-ccCCCCCEECCc--cCchhCChHHHHHHhHhhcCCCCC-CCCCC
Confidence            3666 588888888887  8888888888888888 8888884 88876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.95  E-value=5e-10  Score=69.98  Aligned_cols=40  Identities=20%  Similarity=0.299  Sum_probs=19.1

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|++++||.|..  |++.|.+...|..|++ .|.++++|.|.+
T Consensus         6 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em9_A            6 SGTGEKPYNCKE--CGKSFRWASCLLKHQR-VHSGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCSEECSS--SCCEESSHHHHHHHGG-GGTSCCCCSTTC
T ss_pred             CCCCCcCeECCc--cccccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            444444445544  5555554444554544 244444444443

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=5e-10  Score=69.97  Aligned_cols=40  Identities=20%  Similarity=0.265  Sum_probs=19.6

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|+++++|.|..  |++.|.+...|..|++ .|.++++|.|++
T Consensus         6 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em7_A            6 SGTGEKPYKCEE--CGKGFICRRDLYTHHM-VHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCCCSEECSS--SCCEESCHHHHHHHGG-GGTTCCCSSTTC
T ss_pred             CCCCCcCccCCC--ccchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            444445555544  5555555555555544 244455555543

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.7e-10  Score=70.12  Aligned_cols=40  Identities=25%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|+++++|.|..  |++.|.+...|..|++ .|.++++|.|++
T Consensus         6 ~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2en1_A            6 SGSGEKPFKCEE--CGKRFTQNSQLHSHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSEEETT--TTEEESSHHHHHHHGG-GGSCCCCSCCCC
T ss_pred             CCCCCCCeeCCC--CCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            455555555544  5555555555555554 355555555543

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.1e-10  Score=69.60  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|..
T Consensus         3 h~~~h-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytm_A            3 SGSSG-TGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPSS   45 (46)
T ss_dssp             SCCCC-SSCCSSSBTTTTBCCSSHHHHHHHHH-HHHSCCCCCCCC
T ss_pred             CCcCC-CCCCCcCCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55555 44566666666666666666666665 566666666654

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.6e-10  Score=67.89  Aligned_cols=42  Identities=14%  Similarity=0.285  Sum_probs=33.0

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      |++ .|.++++|.|.+  |++.|.+...|.+|+++|++++| |.|+
T Consensus         1 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2yte_A            1 GSS-GSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKSG-PSSG   42 (42)
T ss_dssp             CCS-SSCSCCSCBCTT--TCCBCSSHHHHHHHHHHTSCCSS-CCCC
T ss_pred             CCc-CcCCCCCeECCC--CCCccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            555 478888888887  88888888888888888888874 8774

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.5e-10  Score=69.79  Aligned_cols=44  Identities=23%  Similarity=0.432  Sum_probs=35.3

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ep1_A            2 SSGS-SGTGEKPYECSD--CGKSFIKKSQLHVHQRIHTGENP-SGPSS   45 (46)
T ss_dssp             CCCC-CCSSCCSSCCSS--SCCCCSSHHHHHHHHGGGSSSCC-CSSSC
T ss_pred             cccc-CCCCCCCcCCCC--CCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4676 588888888887  88888888888888888888884 88864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.4e-10  Score=70.79  Aligned_cols=42  Identities=24%  Similarity=0.426  Sum_probs=19.2

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||+|.
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2ytg_A            3 SGSSG-TGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPS   44 (46)
T ss_dssp             CCCCC-SSCCSEECTTTCCEESSSHHHHTTGG-GGSSCCSSCSC
T ss_pred             CCCCC-CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            44444 33344444444444444444444443 44444444443

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.7e-10  Score=70.09  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      .|+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         2 ~h~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en6_A            2 SSGSSG-SGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCC-CSSCCEEETTTTEEESSHHHHHHHHH-HHSSCCCSSSCC
T ss_pred             CCCCcc-CCCcCeECCCCCcccCchHHHHHHHH-HcCCCCCCCCCC
Confidence            355555 44456666666666666666666655 566666666654

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.94  E-value=4.7e-10  Score=68.56  Aligned_cols=42  Identities=21%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      |++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+
T Consensus         1 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2el5_A            1 GSS-GSSGENPYECSE--CGKAFNRKDQLISHQRTHAGESG-PSSG   42 (42)
T ss_dssp             CCS-SSSSCCSEECSS--SCCEESSHHHHHHHHGGGCCCCS-CCCC
T ss_pred             CCC-CCCCCCCccCCC--cChhhCCHHHHHHHHHhcCCCCC-CCCC
Confidence            455 477777888876  88888888888888888877773 7774

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.7e-10  Score=70.11  Aligned_cols=44  Identities=25%  Similarity=0.402  Sum_probs=33.4

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enf_A            2 SSGS-SGTGEKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCCCCCSCBCSS--SCCBCSSHHHHHHHHTTTTTSSC-CCCSC
T ss_pred             CCCc-CCCCCcCeECCC--CCcccCCHHHHHHHHHhhCCCCC-CCCCC
Confidence            4666 477788888886  88888888888888888888774 87764

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.4e-10  Score=70.77  Aligned_cols=44  Identities=27%  Similarity=0.397  Sum_probs=26.0

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+.
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2yu8_A            2 SSGSSG-TGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCCC-CCCSSEECSSSCCEESSSHHHHHHTH-HHHSCCCSCSCC
T ss_pred             CcCcCC-CCCCCeECCcCCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            355555 34456666666666666666666655 566666666654

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.1e-10  Score=69.96  Aligned_cols=44  Identities=23%  Similarity=0.402  Sum_probs=33.8

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq2_A            2 SSGS-SGTGGKPYQCNE--CGKAFSQTSKLARHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-SSSSSCSSSCCS--SCCCCSSHHHHHHHGGGGCCCCC-CCCCC
T ss_pred             Cccc-ccCCCCCeECCC--CCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            4666 477888888886  88888888888888888888774 87763

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.5e-10  Score=70.20  Aligned_cols=44  Identities=23%  Similarity=0.373  Sum_probs=35.9

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|++
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eow_A            2 SSGS-SGTGEKPYKCNE--CGKAFRARSSLAIHQATHSGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CSCCCCCEECTT--SCCEESSHHHHHHHHHHHCCCSC-SCTTC
T ss_pred             CccC-CCCCCCCeeccc--cCChhcCHHHHHHHHHHcCCCCC-CCCCC
Confidence            4677 588888888887  88888888888888888888884 88864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.7e-10  Score=70.10  Aligned_cols=44  Identities=23%  Similarity=0.458  Sum_probs=36.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2em3_A            2 SSGS-SGTGEKPYECKV--CSKAFTQKAHLAQHQKTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCSSCCSEECSS--SCCEESSHHHHHHHHHHHCCCCC-CCSCC
T ss_pred             CCCC-CCCCCcCeECCC--CCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4777 588888899987  99999999999999988888884 88864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.3e-10  Score=69.87  Aligned_cols=39  Identities=23%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCP  332 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  332 (391)
                      +|+++++|.|..  |++.|.+...|..|++ .|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2ep3_A            6 SGTGEKPYRCAE--CGKAFTDRSNLFTHQK-IHTGEKPSGPS   44 (46)
T ss_dssp             SSSCCCSEECSS--SCCEESSHHHHHHHHT-TTTTSCCCCTT
T ss_pred             CCCCCCCeECCC--CCchhCCHHHHHHHHH-HcCCCCCCCCC
Confidence            444444555544  5555555555555544 24444455444

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.94  E-value=4.5e-10  Score=70.21  Aligned_cols=44  Identities=30%  Similarity=0.416  Sum_probs=35.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|++
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emj_A            2 SSGS-SGTGEKPFECAE--CGKSFSISSQLATHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCCCCCSEECSS--SSCEESSHHHHHHHHHHHTTSCS-SSSCC
T ss_pred             CCCC-CCCCCCCEECCC--CCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4677 588888888887  88888888888888888888884 88864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5e-10  Score=69.97  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=20.7

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         3 H~~~h-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ysp_A            3 SGSSG-TGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPSS   45 (46)
T ss_dssp             CCCCC-SSCCSEEETTTTEEESCHHHHHHHHT-TSCSCCSSCCSC
T ss_pred             CCcCC-CCCCCeECCCCCCccCCHHHHHHHHH-hhCCCCCCCCCC
Confidence            44444 33344555555555555555555544 455555555543

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=6.7e-10  Score=69.38  Aligned_cols=43  Identities=23%  Similarity=0.318  Sum_probs=25.0

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yso_A            3 SGSSG-SREKSHQCRECGEIFFQYVSLIEHQV-LHMGQKNSGPSS   45 (46)
T ss_dssp             CSCCS-SCCCCEECTTTCCEESSHHHHHHHHH-HHSCCSCCCTTC
T ss_pred             ccccc-CCCCCEEccccChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            45555 34455666666666666666666654 566666666644

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=7.2e-10  Score=69.24  Aligned_cols=43  Identities=19%  Similarity=0.329  Sum_probs=21.5

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         3 h~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2enc_A            3 SGSSG-SGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPSS   45 (46)
T ss_dssp             CSSCC-CCCCSEECSSSCCEESSHHHHHHHHH-HSCCSSCCSSCC
T ss_pred             CCCCC-CCCCCcCCCCCCCcCCChHHHHHHHH-HhCCCCCCCCCC
Confidence            44444 33445555555555555555555544 455555555543

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=6.8e-10  Score=69.37  Aligned_cols=44  Identities=25%  Similarity=0.400  Sum_probs=36.3

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~h~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2en9_A            2 SSGS-SGAGKKLFKCNE--CKKTFTQSSSLTVHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCS-SCCSSCCCBCTT--TCCBCSSHHHHHHHHHHHTSSCC-CSCCC
T ss_pred             CCCC-CCCCCCCEECCc--cCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            4666 588888888887  88888888888888888888884 88864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.4e-10  Score=69.81  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=33.3

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yti_A            2 SSGS-SGTGEKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCSCCCTTCCSS--SCCCCSSHHHHHHHHTTTSCSCC-SSTTC
T ss_pred             CCCc-CCCCCcCeECCC--CCcccCChhHHHHHhHhcCCCCC-CCCCC
Confidence            3666 477788888886  88888888888888888887774 77764

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.7e-10  Score=69.74  Aligned_cols=44  Identities=27%  Similarity=0.466  Sum_probs=33.1

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yth_A            2 SSGS-SGSGEKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCS-CCCCSSSBCCSS--SCCCBSSHHHHHHHGGGGTTCCC-SSCCC
T ss_pred             Cccc-CCCCCcCCCCCC--CCcccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            4666 477778888876  88888888888888888877774 77763

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.93  E-value=7.1e-10  Score=69.29  Aligned_cols=40  Identities=23%  Similarity=0.343  Sum_probs=18.9

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|+++++|.|..  |++.|.+...|..|++ .|.++++|.|.+
T Consensus         6 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2el6_A            6 SGAGVNPYKCSQ--CEKSFSGKLRLLVHQR-MHTREKPSGPSS   45 (46)
T ss_dssp             SSCCCCSEECSS--SSCEESSHHHHHHHHG-GGCCSSCCSCCC
T ss_pred             CCCCCCCeECCC--CCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            444444444444  4444444444444444 244444444443

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=5.9e-10  Score=69.65  Aligned_cols=44  Identities=25%  Similarity=0.360  Sum_probs=35.7

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em4_A            2 SSGS-SGTGQRPYECIE--CGKAFKTKSSLICHRRSHTGEKP-SGPSS   45 (46)
T ss_dssp             CSCC-CCCCSSSEECSS--SCCEESSHHHHHHHHHHHSSSSC-CCCCC
T ss_pred             CCcc-ccCCCcCcCCCC--CCCccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            3666 588888888887  88888888888888888888884 88864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.8e-10  Score=70.08  Aligned_cols=44  Identities=27%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|+++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytp_A            2 SSGS-SGTGERHYECSE--CGKAFARKSTLIMHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-SSCCCCCEECSS--SCCEESSHHHHHHHHTTTSCCCC-CSSCC
T ss_pred             Cccc-CcCCCCCeECCc--CCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            3566 477777777776  77777777777777777777773 77753

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=5.5e-10  Score=69.79  Aligned_cols=44  Identities=27%  Similarity=0.481  Sum_probs=36.3

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|++
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~kp-~~C~~   45 (46)
T 2eor_A            2 SSGS-SGTGEKPYNCEE--CGKAFIHDSQLQEHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CSSS-SSSCCCSEECTT--TCCEESSHHHHHHHHHHHHSCCC-SSSTT
T ss_pred             CCCc-CcCCCcCccCCC--CCCCcCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            4777 588888888887  88888888888888888888884 88864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=7.7e-10  Score=69.11  Aligned_cols=44  Identities=23%  Similarity=0.334  Sum_probs=32.8

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|++
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2emg_A            2 SSGS-SGTGENPFICSE--CGKVFTHKTNLIIHQKIHTGERP-SGPSS   45 (46)
T ss_dssp             CCCC-CCCSCCSCBCTT--TCCBCSSHHHHHHHHTTTSCCCC-SCSCC
T ss_pred             CCCC-CCCCCCCEECCc--cCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            3666 477777888876  88888888888888888877774 77763

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.92  E-value=8.3e-10  Score=68.60  Aligned_cols=42  Identities=21%  Similarity=0.473  Sum_probs=34.8

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcc
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCL  368 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~  368 (391)
                      .|+++++|.|..  |++.|.....|..|+++|++++ +|.|+.  ||
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~~~~-~~~C~~--cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSV-GKSGPS--SG   45 (45)
T ss_dssp             CCSSCCSSEETT--TTEECSCHHHHHHHHHHHSCCC-CCCCCC--CC
T ss_pred             CcCCCCCCcCCC--CCcccCCHHHHHHHHHHccCCC-CCCCcC--CC
Confidence            578888888887  8888888888888888888888 488887  75

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=6.9e-10  Score=69.33  Aligned_cols=44  Identities=30%  Similarity=0.546  Sum_probs=33.2

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em6_A            2 SSGS-SGMGEKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCS-CCCCCCCCBCSS--SCCBCSSHHHHHHHHTTTSSSCC-CCTTC
T ss_pred             CCcc-ccCCCCCeECCC--CCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            3666 477788888876  88888888888888888887774 77763

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=6.7e-10  Score=69.40  Aligned_cols=44  Identities=23%  Similarity=0.410  Sum_probs=33.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq1_A            2 SSGS-SGTGEKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-CCCCSCCCCCTT--TTCCCSSHHHHHHHHTTTCCSCC-SSCCC
T ss_pred             Cccc-ccCCCCCeECCc--CChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4666 477888888886  88888888888888888888774 87763

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=9.7e-10  Score=68.96  Aligned_cols=41  Identities=20%  Similarity=0.292  Sum_probs=20.5

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|++++||.|..  |++.|.+...|..|++..|.+++||.|.+
T Consensus         6 ~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            6 SGTGKKPYECIE--CGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCCCCSBCCSS--SCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             ccCCCCCEECCc--cCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            445555555544  55555555555555542255555555543

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.9e-10  Score=68.83  Aligned_cols=43  Identities=19%  Similarity=0.379  Sum_probs=35.0

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|.+|+++|++++ +|.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k-~~~C~   44 (46)
T 2eoh_A            2 SSGS-SGSGKKPYECKE--CRKTFIQIGHLNQHKRVHTGER-SSGPS   44 (46)
T ss_dssp             CCCC-SCCCSCSCCCSS--SCCCCSSHHHHHHHHHHCSSCC-SCSTT
T ss_pred             CCCC-CcCCCCCcCCCC--cCchhCCHHHHHHHHHHhCCCC-CCCCC
Confidence            3666 588888888887  8888888888888888888888 48886

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=6.6e-10  Score=68.67  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=33.8

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2en7_A            2 SSGS-SGTGMKPYVCNE--CGKAFRSKSYLIIHTRTHTGESG-PSSG   44 (44)
T ss_dssp             CSCC-CSSSSSSSCCTT--TCCCCSSHHHHHHHHTTTCCSSS-SCCC
T ss_pred             CCCc-CCCCCcCeECCC--CCCccCCHHHHHHHhhhcCCCCC-CCCC
Confidence            4666 488888888887  88888888888888888888874 8774

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=6.7e-10  Score=68.62  Aligned_cols=43  Identities=16%  Similarity=0.264  Sum_probs=34.2

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eof_A            2 SSGS-SGTGEKPYECNE--CQKAFNTKSNLMVHQRTHTGESG-PSSG   44 (44)
T ss_dssp             CCSS-CCSCCCSEECTT--TCCEESCHHHHHHHHHHTTTSSC-SCCC
T ss_pred             CCcc-CCCCCCCeECCC--CCcccCCHhHHHHHHHHhCCCCC-CCCC
Confidence            4666 588888888887  88888888888888888888874 8774

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.4e-09  Score=66.39  Aligned_cols=41  Identities=20%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|
T Consensus         1 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGS-SGEKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSS   41 (42)
T ss_dssp             CCSSS-CSCCSCBCTTTCCBCSSHHHHHHHHH-HTSCCSSCCC
T ss_pred             CCcCc-CCCCCeECCCCCCccCCHHHHHHHHH-HhCCCCCCCC
Confidence            34444 34455555555555555555555554 5555555555

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.1e-10  Score=69.94  Aligned_cols=44  Identities=23%  Similarity=0.465  Sum_probs=35.2

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2eoz_A            2 SSGS-SGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQETL-SGPSS   45 (46)
T ss_dssp             CSCC-CCSSCCSEEETT--TTEEESSHHHHHHHHHHHSSCCS-SSCCC
T ss_pred             Cccc-cCCCCCCeECcc--cChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4677 588888888887  88888888888888888888884 88863

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.9e-10  Score=69.64  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytf_A            2 SSGS-SGTGEKPFECSE--CQKAFNTKSNLIVHQRTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-SSCCCCSEECSS--SCCEESSHHHHHHHHHTSCSSSS-SCCCC
T ss_pred             CCCC-CCCCCCCcCCCC--CCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            3666 477777777776  77777777777777777777773 77753

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.3e-09  Score=68.07  Aligned_cols=42  Identities=26%  Similarity=0.436  Sum_probs=23.1

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSG-TGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGPS   44 (46)
T ss_dssp             CCCSS-SSSCSSSCCSSCCCCSSHHHHHHHGG-GGCCCCCCCCC
T ss_pred             ccccc-CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            45555 34455555555555555555555554 55555555554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.2e-09  Score=68.20  Aligned_cols=42  Identities=24%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSG-TGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCCC-CCCCSCBCSSSCCBCSSHHHHHHHHT-TTTTSSCCCCS
T ss_pred             CCcCC-CCCcCeECCCCCcccCCHHHHHHHHH-hhCCCCCCCCC
Confidence            44444 33445555555555555555555544 45555555553

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=8.4e-10  Score=68.93  Aligned_cols=44  Identities=25%  Similarity=0.444  Sum_probs=32.7

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emi_A            2 SSGS-SGTGERHYECSE--CGKAFIQKSTLSMHQRIHRGEKP-SGPSS   45 (46)
T ss_dssp             CCCC-SCSSCCCEECSS--SCCEESSHHHHHHHHGGGCSCCC-CSCCC
T ss_pred             CCCc-ccCCCCCCCCCC--CCcccCCHHHHHHHHhHhCCCCC-CCCCC
Confidence            3666 477777888876  88888888888888888877774 77763

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.90  E-value=1.1e-09  Score=66.95  Aligned_cols=38  Identities=18%  Similarity=0.372  Sum_probs=19.0

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC  331 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  331 (391)
                      +|+++++|+|..  |++.|.+...|..|++ .|.++++|.|
T Consensus         4 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSE--CGKAFNRKDQLISHQR-THAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSS--SCCEESSHHHHHHHHG-GGCCCCSCCC
T ss_pred             CCCCCCCccCCC--cChhhCCHHHHHHHHH-hcCCCCCCCC
Confidence            444555555544  5555555555555554 2455555544

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=8.5e-10  Score=68.93  Aligned_cols=43  Identities=23%  Similarity=0.313  Sum_probs=25.8

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|..
T Consensus         3 h~~~h-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em8_A            3 SGSSG-SGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPSS   45 (46)
T ss_dssp             CCCCC-CSCCSEECSSSCCEESSHHHHHHHHH-HHHCCCCCCSCC
T ss_pred             CCCCC-CCCCCeECcccCchhCCHHHHHHHHH-HHcCCCCCCCCC
Confidence            45555 44456666666666666666666655 566666666654

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=7.5e-10  Score=69.17  Aligned_cols=44  Identities=30%  Similarity=0.440  Sum_probs=37.7

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~h~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emz_A            2 SSGS-SGSGERPFKCNE--CGKGFGRRSHLAGHLRLHSREKS-SGPSS   45 (46)
T ss_dssp             CCCS-CSSCCCSCCCSS--SCCCCSSHHHHHHHHHHHHHTTC-CCSCC
T ss_pred             CCCc-CCCCCCCeECCC--CCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4777 588999999997  99999999999999999998884 88864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.4e-09  Score=67.81  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=25.4

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSG-TGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGPS   44 (46)
T ss_dssp             CCCCCC-SSCCSSCCSSSCCCCSSHHHHHHHHG-GGSSSCCCSSS
T ss_pred             ccccCC-CCCCCcCCCCCCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            355555 34456666666666666666666655 56666666664

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=7.1e-10  Score=68.55  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=34.5

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2yu5_A            2 SSGS-SGAGENPFKCSK--CDRVFTQRNYLVQHERTHARKSG-PSSG   44 (44)
T ss_dssp             CCSC-CCSCCCSEECSS--SSCEESSSHHHHHHHHHCCCCCS-SCCC
T ss_pred             CCcc-ccCCCCCeECCC--CCchhCCHHHHHHHhHhcCCCCC-CCCC
Confidence            4677 488888888887  88888888888888888888884 8774

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6e-10  Score=69.60  Aligned_cols=44  Identities=27%  Similarity=0.469  Sum_probs=29.6

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~p-~~C~~   45 (46)
T 2yts_A            2 SSGS-SGTGEKPYICNE--CGKSFIQKSHLNRHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCSC-CCCSCCSEECSS--SCCEESSHHHHHHHGGGTSSCCS-SCCCC
T ss_pred             CCCC-CCCCCcCEECCC--CChhhCChHHHHHHHHhcCCCCC-cCCCC
Confidence            3555 466777777776  77777777777777777777663 76653

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=7.7e-10  Score=69.13  Aligned_cols=42  Identities=26%  Similarity=0.506  Sum_probs=28.1

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      |++ .|.++++|.|.+  |++.|.+...|.+|+++|++++| |.|+
T Consensus         3 h~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eon_A            3 SGS-SGTGEKPYKCQV--CGKAFRVSSHLVQHHSVHSGERP-SGPS   44 (46)
T ss_dssp             CSS-SCSSCCSCBCSS--SCCBCSSHHHHHHHTTTTTSCCS-CTTS
T ss_pred             CCC-CCCCCcccCCCC--CCcccCcHHHHHHHHHhcCCCCC-CCCC
Confidence            455 466667777765  77777777777777777776663 6665

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.2e-09  Score=68.27  Aligned_cols=42  Identities=24%  Similarity=0.466  Sum_probs=24.0

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2em2_A            3 SGSSG-SGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCSC-CCCCSEECSSSCCEESSHHHHHHHHH-HHCCCCSSCSS
T ss_pred             CCCCC-CCCCCEECCcCCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            45555 34455666666666666666666654 55555666554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6.6e-10  Score=69.41  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++ +|.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k-~~~C~~   45 (46)
T 2yrj_A            2 SSGS-SGTGEKPYRCGE--CGKAFAQKANLTQHQRIHTGEK-PSGPSS   45 (46)
T ss_dssp             CCCC-CCCCCCCEECSS--SCCEESSHHHHHHHHTTTSSCC-SSCSCC
T ss_pred             CCcc-CCCCCCCeECCC--CCCccCCHHHHHHHHHHcCCCC-CCCCCC
Confidence            3666 477777777776  7777777777777777777777 377753

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.4e-09  Score=67.93  Aligned_cols=42  Identities=24%  Similarity=0.375  Sum_probs=21.8

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSG-TGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCCC-SCCCTTCCSSSCCCCSSHHHHHHHHT-TTSCSCCSSTT
T ss_pred             CCcCC-CCCcCeECCCCCcccCChhHHHHHhH-hcCCCCCCCCC
Confidence            44444 33455555555555555555555544 45555555553

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.89  E-value=1.1e-09  Score=68.32  Aligned_cols=43  Identities=26%  Similarity=0.480  Sum_probs=25.0

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      .|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSG-TGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCC-CCCCSEECSSSSCEESSHHHHHHHHH-HHTTSCSSSSC
T ss_pred             CCCCCC-CCCCCEECCCCCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            355555 34456666666666666666666655 56666666654

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.6e-09  Score=67.68  Aligned_cols=42  Identities=24%  Similarity=0.404  Sum_probs=22.6

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|.
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSG-TGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPS   44 (46)
T ss_dssp             CCCCC-CSCCSCBCTTTCCBCSSHHHHHHHHT-TTSCCCCSCSC
T ss_pred             CCCCC-CCCCCEECCccCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            44555 34455555555555555555555554 55555555553

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.2e-09  Score=68.11  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=24.8

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSG-TGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGPS   44 (46)
T ss_dssp             CCCCCS-CCCCCEECTTSCCEESSHHHHHHHHH-HHCCCSCSCTT
T ss_pred             CccCCC-CCCCCeeccccCChhcCHHHHHHHHH-HcCCCCCCCCC
Confidence            355555 34455666666666666666666654 56666666654

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.6e-09  Score=67.68  Aligned_cols=42  Identities=24%  Similarity=0.453  Sum_probs=20.9

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSG-SGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPS   44 (46)
T ss_dssp             CCSCC-CCSSSBCCSSSCCCBSSHHHHHHHGG-GGTTCCCSSCC
T ss_pred             cccCC-CCCcCCCCCCCCcccCCHHHHHHHHH-hcCCCCCCCCC
Confidence            44444 33345555555555555555555544 45555555553

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.3e-10  Score=68.96  Aligned_cols=43  Identities=21%  Similarity=0.386  Sum_probs=35.4

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++ +|.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k-~~~C~   44 (46)
T 2yto_A            2 SSGS-SGTGEKPYKCSD--CGKAFTRKSGLHIHQQSHTGER-HSGPS   44 (46)
T ss_dssp             CCCC-CCCSCCCEECSS--SCCEESSHHHHHHHHHHHTCCC-BTTTB
T ss_pred             Cccc-ccCCCCCEECcc--cCCccCCHhHHHHHHHHcCCCC-CCCCC
Confidence            4777 588888888887  8888888888888888888888 48886

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.6e-09  Score=67.63  Aligned_cols=42  Identities=24%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSG-MGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGPS   44 (46)
T ss_dssp             CCSCC-CCCCCCBCSSSCCBCSSHHHHHHHHT-TTSSSCCCCTT
T ss_pred             Ccccc-CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            44444 33455555555555555555555544 55555555553

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.7e-09  Score=67.46  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=26.3

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      .|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         2 ~h~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSG-AGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSC-CSSCCCBCTTTCCBCSSHHHHHHHHH-HHTSSCCCSCC
T ss_pred             CCCCCC-CCCCCEECCccCcccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            355555 44456666666666666666666655 56666666664

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.5e-09  Score=67.04  Aligned_cols=41  Identities=24%  Similarity=0.395  Sum_probs=23.1

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSG-TGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSS   43 (44)
T ss_dssp             SCCCS-SSSSSSCCTTTCCCCSSHHHHHHHHT-TTCCSSSSCC
T ss_pred             CCcCC-CCCcCeECCCCCCccCCHHHHHHHhh-hcCCCCCCCC
Confidence            45555 34455566666666666666666654 5555555555

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.4e-09  Score=67.90  Aligned_cols=43  Identities=28%  Similarity=0.369  Sum_probs=25.7

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|.+++||.|+
T Consensus         2 ~H~~~H-~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSG-TGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPS   44 (46)
T ss_dssp             CCCCCC-SSCCSEECSSSCCEESSHHHHHHHHH-HHCCCCCCCSC
T ss_pred             CCCCCC-CCCcCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            355555 44456666666666666666666655 56666666664

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.2e-09  Score=68.14  Aligned_cols=39  Identities=21%  Similarity=0.396  Sum_probs=19.0

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCP  332 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  332 (391)
                      +|++++||+|..  |++.|.+...|..|++ .|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2ytp_A            6 SGTGERHYECSE--CGKAFARKSTLIMHQR-IHTGEKPSGPS   44 (46)
T ss_dssp             SSCCCCCEECSS--SCCEESSHHHHHHHHT-TTSCCCCCSSC
T ss_pred             CcCCCCCeECCc--CCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            444445555544  5555555555555544 24444555444

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.5e-10  Score=67.93  Aligned_cols=41  Identities=22%  Similarity=0.407  Sum_probs=26.2

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceec
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C  362 (391)
                      |++ .|.++++|.|++  |++.|.+...|..|+++|++++| |.|
T Consensus         2 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2ytb_A            2 SSG-SSGGEKPYRCDQ--CGKAFSQKGSLIVHIRVHTGSGP-SSG   42 (42)
T ss_dssp             CCC-CCCSCCSBCCTT--TTCCBSSHHHHHTTGGGTSCCSC-CCC
T ss_pred             Ccc-ccCCCCCeeCCC--ccchhCCHHHHHHHHHHhCCCCC-CCC
Confidence            555 366666666665  66666666666666666666663 655

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.4e-09  Score=67.84  Aligned_cols=41  Identities=24%  Similarity=0.447  Sum_probs=19.1

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~p~~C   43 (46)
T 2yts_A            3 SGSSG-TGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGP   43 (46)
T ss_dssp             CSCCC-CSCCSEECSSSCCEESSHHHHHHHGG-GTSSCCSSCC
T ss_pred             CCCCC-CCCcCEECCCCChhhCChHHHHHHHH-hcCCCCCcCC
Confidence            44444 33344444444444444444444443 4444444444

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.7e-09  Score=67.52  Aligned_cols=42  Identities=24%  Similarity=0.410  Sum_probs=22.6

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSG-TGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCCC-CCSCCCCCTTTTCCCSSHHHHHHHHT-TTCCSCCSSCC
T ss_pred             ccccc-CCCCCeECCcCChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            45555 33455555555555555555555554 55555555553

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.4e-09  Score=67.11  Aligned_cols=41  Identities=20%  Similarity=0.329  Sum_probs=22.8

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSG-TGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSS   43 (44)
T ss_dssp             CSSCC-SCCCSEECTTTCCEESCHHHHHHHHH-HTTTSSCSCC
T ss_pred             CccCC-CCCCCeECCCCCcccCCHhHHHHHHH-HhCCCCCCCC
Confidence            45555 34455555555555555555555554 5555555555

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2e-09  Score=67.14  Aligned_cols=42  Identities=21%  Similarity=0.346  Sum_probs=26.4

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSG-SGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGPS   44 (46)
T ss_dssp             CCCSC-CCSCSCCCSSSCCCCSSHHHHHHHHH-HCSSCCSCSTT
T ss_pred             CCCCc-CCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            55555 44466666666666666666666655 56666666664

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.5e-09  Score=67.73  Aligned_cols=42  Identities=21%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSG-TGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGPS   44 (46)
T ss_dssp             CCCSS-CCCCSEECSSSCCEESSHHHHHHHHH-TSCSSSSSCCC
T ss_pred             CCCCC-CCCCCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            44444 33345555555555555555555544 45555555543

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.4e-09  Score=67.95  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=24.0

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|.+|++.|.....|..|++ +|++++||+|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSG-TGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPS   44 (46)
T ss_dssp             SCCCC-CCSSSEECSSSCCEESSHHHHHHHHH-HHSSSSCCCCC
T ss_pred             Ccccc-CCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCC
Confidence            55555 34455666666666666666666654 55555666554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.5e-09  Score=67.80  Aligned_cols=43  Identities=23%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSG-TGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGPS   44 (46)
T ss_dssp             CCCCCC-CSCCCEECSSSCCEESSHHHHHHHHH-HHTCCCBTTTB
T ss_pred             Cccccc-CCCCCEECcccCCccCCHhHHHHHHH-HcCCCCCCCCC
Confidence            466666 44566777777777777777777765 66666777664

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.5e-09  Score=66.98  Aligned_cols=42  Identities=17%  Similarity=0.290  Sum_probs=25.2

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||.|
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSSG-AGENPFKCSKCDRVFTQRNYLVQHER-THARKSGPSS   43 (44)
T ss_dssp             CCSCCC-SCCCSEECSSSSCEESSSHHHHHHHH-HCCCCCSSCC
T ss_pred             CCcccc-CCCCCeECCCCCchhCCHHHHHHHhH-hcCCCCCCCC
Confidence            355555 44456666666666666666666655 5666666665

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.5e-10  Score=68.16  Aligned_cols=43  Identities=21%  Similarity=0.354  Sum_probs=30.4

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++ +|.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~-~~~C~   44 (44)
T 2eoj_A            2 SSGS-SGTGENPYECCE--CGKVFSRKDQLVSHQKTHSGQS-GPSSG   44 (44)
T ss_dssp             CSCC-SSSSCCSCEETT--TTEECSSHHHHHHHHTTSSSSC-SCCCC
T ss_pred             CCcc-ccCCCcCeeCCC--CCCccCCHHHHHHHHHHcCCCC-CCCCC
Confidence            3566 477777777776  7777777777777777777777 37763

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.3e-09  Score=66.53  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC  331 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  331 (391)
                      +|++++||.|..  |++.|.+...|..|++ .|.+++||.|
T Consensus         5 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2ytb_A            5 SSGGEKPYRCDQ--CGKAFSQKGSLIVHIR-VHTGSGPSSG   42 (42)
T ss_dssp             CCCSCCSBCCTT--TTCCBSSHHHHHTTGG-GTSCCSCCCC
T ss_pred             ccCCCCCeeCCC--ccchhCCHHHHHHHHH-HhCCCCCCCC
Confidence            455555555544  5555555555555555 3555555554

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=9.3e-10  Score=69.45  Aligned_cols=42  Identities=29%  Similarity=0.521  Sum_probs=26.8

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCccc
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLM  369 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~  369 (391)
                      |.++++|.|.+  |++.|.+...|..|+++|++++| |.|++  |++
T Consensus         7 ~~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~--C~k   48 (48)
T 2epr_A            7 GRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKP-YSSGP--SSG   48 (48)
T ss_dssp             CCCCCSEEETT--TTEEESSHHHHHHHGGGSCSCCC-CCSCC--CCC
T ss_pred             CCCCcCeeCCC--CCcccCCHHHHHHHHHhcCCCCC-ccCCC--CCC
Confidence            55566666665  66666666666666666666663 66666  654

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=9.3e-10  Score=67.99  Aligned_cols=43  Identities=16%  Similarity=0.307  Sum_probs=30.9

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      +|++ .|.++++|.|..  |++.|.+...|..|+++|++++| |.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2emb_A            2 SSGS-SGHTRKRYECSK--CQATFNLRKHLIQHQKTHAAKSG-PSSG   44 (44)
T ss_dssp             CCCS-CCCCCSSEECTT--TCCEESCHHHHHHHGGGGCCCCC-TTCC
T ss_pred             Cccc-ccCCCCCeECCC--CCCccCCHHHHHHHHHHcCCCCC-cCCC
Confidence            4666 477777777776  77777777777777777777773 7763

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.86  E-value=1.4e-09  Score=66.35  Aligned_cols=41  Identities=22%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceec
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C  362 (391)
                      |++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|
T Consensus         2 H~~-~H~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~k~-~~C   42 (42)
T 2epc_A            2 SSG-SSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQSGP-SSG   42 (42)
T ss_dssp             CCS-CCCSSCCEECSS--SCCEESSHHHHHHHHHHTTCCCC-CCC
T ss_pred             CCc-cCCCCCCeECCC--CCcccCCHHHHHHHhhhcCCCCC-CCC
Confidence            455 477788888886  88888888888888888888774 776

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.4e-09  Score=67.86  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=26.0

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSG-TGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPS   44 (46)
T ss_dssp             CSCCCC-SSCCSEEETTTTEEESSHHHHHHHHH-HHSSCCSSSCC
T ss_pred             CccccC-CCCCCeECcccChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            355555 44456666666666666666666655 56666666664

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.8e-09  Score=67.32  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||+|+
T Consensus         3 H~~~H-~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSG-TGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPS   44 (46)
T ss_dssp             CCCSC-SSCCCEECSSSCCEESSHHHHHHHHG-GGCSCCCCSCC
T ss_pred             CCccc-CCCCCCCCCCCCcccCCHHHHHHHHh-HhCCCCCCCCC
Confidence            44444 33445555555555555555555544 45555555553

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.2e-09  Score=68.16  Aligned_cols=40  Identities=25%  Similarity=0.368  Sum_probs=28.9

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|++
T Consensus         6 ~h~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ep0_A            6 SGTGEKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             SSTTCCSEECSS--SCCEESSHHHHHHHHTTTSSSCC-CSCCC
T ss_pred             CCCCCCCeeCcc--cCcccCChHHHHHHHHHhCCCCC-CCCCC
Confidence            467777777776  77777777777777777777773 77766

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2.1e-09  Score=66.35  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=35.4

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      |++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+
T Consensus         3 h~~-~h~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (44)
T 2eou_A            3 SGS-SGAAKTTSECQE--CGKIFRHSSLLIEHQALHAGESG-PSSG   44 (44)
T ss_dssp             CSC-SCSSSCCCCCTT--TCCCCSSHHHHHHHHHHHTTSCC-CCCC
T ss_pred             CCC-CCCCCcCeECCC--CCcccCCHHHHHHHHHHHCCCCC-CCCC
Confidence            566 588888999987  99999999999999999988884 8884

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.7e-09  Score=66.78  Aligned_cols=41  Identities=24%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|.++++|+|
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSG-TGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS   43 (44)
T ss_dssp             SCCSS-SSCCSCEETTTTEECSSHHHHHHHHT-TSSSSCSCCC
T ss_pred             Ccccc-CCCcCeeCCCCCCccCCHHHHHHHHH-HcCCCCCCCC
Confidence            44444 33455555555555555555555544 4555555555

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.1e-09  Score=66.91  Aligned_cols=41  Identities=22%  Similarity=0.515  Sum_probs=26.7

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceec
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C  362 (391)
                      |++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |+|
T Consensus         2 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2eos_A            2 SSG-SSGGEKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGP-SSG   42 (42)
T ss_dssp             CCS-CCSSSCCBCCSS--SCCCBSSHHHHHHHTTTTSCCSS-TTC
T ss_pred             CCc-ccCCCCCEECCC--CCCccCCHHHHHHHHHhcCCCCC-CCC
Confidence            444 466666677765  77777777777777766666663 655

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.5e-09  Score=67.75  Aligned_cols=40  Identities=30%  Similarity=0.498  Sum_probs=34.2

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+.
T Consensus         6 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytt_A            6 SGEGEKPYQCSE--CGKSFSGSYRLTQHWITHTREKP-SGPSS   45 (46)
T ss_dssp             SCSCCCTTCCSS--SCCCCSSHHHHHHHHTHHHHCCC-CSCCC
T ss_pred             CCCCCCCeeCCC--CCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            588888888887  88889888888889888888884 88887

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.7e-09  Score=67.46  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||.|
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C   43 (46)
T 2yrj_A            3 SGSSG-TGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGP   43 (46)
T ss_dssp             CCCCC-CCCCCEECSSSCCEESSHHHHHHHHT-TTSSCCSSCS
T ss_pred             CccCC-CCCCCeECCCCCCccCCHHHHHHHHH-HcCCCCCCCC
Confidence            44444 33344555555555555555555543 4444444444

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.5e-09  Score=67.76  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=31.2

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      |++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+
T Consensus         3 h~~-~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2enh_A            3 SGS-SGTGEKPYECDV--CRKAFSHHASLTQHQRVHSGEKP-SGPS   44 (46)
T ss_dssp             CCC-CCCCSSSCBCTT--TCCBCSSSHHHHHHGGGSCCSCC-CCCC
T ss_pred             CCC-CcCCCCCcCCCC--cCchhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            555 477777777776  88888877778888777777774 7775

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.85  E-value=5e-10  Score=72.71  Aligned_cols=48  Identities=15%  Similarity=0.247  Sum_probs=26.3

Q ss_pred             ccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        307 LLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       307 ~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      +.|.....|..|++ .|.++++|.|.+  |++.|.+...|..|+++|++++
T Consensus         4 k~~~~~~~l~~h~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k   51 (54)
T 1yui_A            4 KRAKHPPGTEKPRS-RSQSEQPATCPI--CYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             CCCSCSSCCCCCHH-HHTSSCCEECTT--TCCEESSHHHHHHHHHHHTTTS
T ss_pred             cccCCCcchhhHHH-hcCCCCCccCCC--CCcccCCHHHHHHHHHHhccCC
Confidence            34445555555555 355555555554  5555555555555555555555

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1e-09  Score=68.55  Aligned_cols=43  Identities=23%  Similarity=0.400  Sum_probs=31.4

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      +|++ .|.++++|.|.+  |++.|.....|..|+++|++++| |.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eq3_A            2 SSGS-SGTGEKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKP-SGPS   44 (46)
T ss_dssp             CCCC-SSCCCCSSEETT--TTEECSSHHHHHHHHTTSCCCCC-CCSC
T ss_pred             Cccc-CCCCCCCeECCC--CChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            3666 477777777776  77777777777777777777773 7775

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=8.3e-10  Score=68.95  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=37.0

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2en3_A            2 SSGS-SGTGEKPFQCKE--CGMNFSWSCSLFKHLRSHERTDP-SGPS   44 (46)
T ss_dssp             CCCC-CSCCCCSEECSS--SCCEESSSHHHHHHHHHHHHSCC-SSCS
T ss_pred             cccc-ccCCCCCeeCcc--cChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            4777 588899999997  99999999999999999998884 8886

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.7e-09  Score=66.72  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=21.1

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||+|
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSG-HTRKRYECSKCQATFNLRKHLIQHQK-THAAKSGPSS   43 (44)
T ss_dssp             CCSCC-CCCSSEECTTTCCEESCHHHHHHHGG-GGCCCCCTTC
T ss_pred             ccccc-CCCCCeECCCCCCccCCHHHHHHHHH-HcCCCCCcCC
Confidence            44444 33445555555555555555555544 4555555554

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.6e-09  Score=67.60  Aligned_cols=42  Identities=26%  Similarity=0.445  Sum_probs=23.6

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|.+|++.|.....|..|++ +|++++||.|+
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSG-TGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPS   44 (46)
T ss_dssp             SSSSS-SCCCSEECTTTCCEESSHHHHHHHHH-HHHSCCCSSST
T ss_pred             CCcCc-CCCcCccCCCCCCCcCCHHHHHHHHH-hcCCCCCCCCC
Confidence            45555 34455666666666666666666654 55555555554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.1e-09  Score=66.93  Aligned_cols=41  Identities=24%  Similarity=0.536  Sum_probs=32.3

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceec
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C  362 (391)
                      |++ .|+++++|.|..  |++.|.+...|..|+++|++++| |.|
T Consensus         2 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2en2_A            2 SSG-SSGGEKPYKCET--CGARFVQVAHLRAHVLIHTGSGP-SSG   42 (42)
T ss_dssp             CCC-CCCSSCSEECTT--TCCEESSHHHHHHHTHHHHSCCS-SCC
T ss_pred             CCc-ccCCCCCEeCCC--cChhhCCHHHHHHHHHHcCCCCC-CCC
Confidence            555 478888888886  88888888888888888888874 776

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.2e-09  Score=68.24  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcC-CCCceecc
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE-NKPKFTCP  363 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~-~~~~~~C~  363 (391)
                      |++ .|.++++|.|.+  |++.|.+...|..|+++|++ ++ +|.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~-~~~C~   45 (46)
T 2eoy_A            3 SGS-SGQKEKCFKCNK--CEKTFSCSKYLTQHERIHTRGVK-SGPSS   45 (46)
T ss_dssp             CCC-CCCCSCCEECSS--SCCEESSSHHHHHHHTTCCSCCT-TSSSC
T ss_pred             Ccc-ccCCCCCEECcC--CCCcCCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            566 477777777776  78888777777778777777 77 37775

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.84  E-value=2.9e-10  Score=76.17  Aligned_cols=55  Identities=24%  Similarity=0.504  Sum_probs=40.8

Q ss_pred             HHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHH
Q psy11069        315 LKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLY  378 (391)
Q Consensus       315 l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~  378 (391)
                      |..|++ .|.+++||.|+.  |++.|.+...|.   ++|++++ +|.|+.  |++.|....++.
T Consensus         2 L~~h~~-~H~~~k~~~C~~--C~k~F~~~~~l~---~~H~~~k-~~~C~~--C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDER-DSTNRASFKCPV--CSSTFTDLEANQ---LFDPMTG-TFRCTF--CHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSS-SCCSSSEEECSS--SCCEEEHHHHHH---HEETTTT-EEBCSS--SCCBCEECTTCS
T ss_pred             hhhHHH-HcCCCCCccCCC--CCchhccHHHhH---hhcCCCC-CEECCC--CCCccccCcccc
Confidence            346777 478888888886  888888777775   6787777 488877  888887766543

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.84  E-value=2.5e-10  Score=76.49  Aligned_cols=55  Identities=20%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             HhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHH
Q psy11069        255 LKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALK  316 (391)
Q Consensus       255 l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~  316 (391)
                      |..|+++| .++++|.|+.||+.|.....|.   + +|.+++||.|..  |++.|....++.
T Consensus         2 L~~h~~~H-~~~k~~~C~~C~k~F~~~~~l~---~-~H~~~k~~~C~~--C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDS-TNRASFKCPVCSSTFTDLEANQ---L-FDPMTGTFRCTF--CHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSC-CSSSEEECSSSCCEEEHHHHHH---H-EETTTTEEBCSS--SCCBCEECTTCS
T ss_pred             hhhHHHHc-CCCCCccCCCCCchhccHHHhH---h-hcCCCCCEECCC--CCCccccCcccc
Confidence            34566666 4456666666666666665554   3 566666666665  666666554443

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.2e-09  Score=65.53  Aligned_cols=38  Identities=21%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC  331 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  331 (391)
                      +|++++||.|..  |++.|.+...|..|++ .|.+++||.|
T Consensus         5 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEI--CGTRFRHLQTLKSHLR-IHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCBCCSS--SCCCBSSHHHHHHHTT-TTSCCSSTTC
T ss_pred             ccCCCCCEECCC--CCCccCCHHHHHHHHH-hcCCCCCCCC
Confidence            455555555544  5555555555555555 3555555554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.2e-09  Score=66.98  Aligned_cols=42  Identities=26%  Similarity=0.422  Sum_probs=23.1

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSG-TGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGPS   44 (46)
T ss_dssp             CCCSS-CCCCSSEETTTTEECSSHHHHHHHHT-TSCCCCCCCSC
T ss_pred             cccCC-CCCCCeECCCCChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            45555 34455555555555555555555554 55555555553

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.83  E-value=1e-09  Score=71.14  Aligned_cols=50  Identities=14%  Similarity=0.135  Sum_probs=27.5

Q ss_pred             ccccchhhHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcc
Q psy11069        247 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNF  298 (391)
Q Consensus       247 ~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~  298 (391)
                      +.|.....|..|+++| .++++|.|.+|++.|.....|..|++ +|++++||
T Consensus         4 k~~~~~~~l~~h~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRS-QSEQPATCPICYAVIRQSRNLRRHLE-LRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHH-TSSCCEECTTTCCEESSHHHHHHHHH-HHTTTSCC
T ss_pred             cccCCCcchhhHHHhc-CCCCCccCCCCCcccCCHHHHHHHHH-HhccCCCC
Confidence            4455555555555555 34455555555555555555555554 55555554

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.82  E-value=2.6e-09  Score=65.11  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=21.5

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|
T Consensus         2 H~~~H-~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSS-GGETPYLCGQCGKSFTQRGSLAVHQR-SCSQSGPSSG   42 (42)
T ss_dssp             CCSCC-CSSCCEECSSSCCEESSHHHHHHHHH-HTTCCCCCCC
T ss_pred             CCccC-CCCCCeECCCCCcccCCHHHHHHHhh-hcCCCCCCCC
Confidence            34444 33455555555555555555555554 5555555554

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.2e-09  Score=66.95  Aligned_cols=43  Identities=23%  Similarity=0.411  Sum_probs=27.0

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      .|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         2 ~h~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSG-SGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGPS   44 (46)
T ss_dssp             CCCSCS-SCCCSCCCSSSCCCCSSHHHHHHHHH-HHHHTTCCCSC
T ss_pred             CCCcCC-CCCCCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            355555 44566666666666666666666655 56666666664

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=3.9e-09  Score=65.84  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=33.0

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|.+
T Consensus         6 ~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eom_A            6 SGHGERGHRCSD--CGKFFLQASNFIQHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCSSCCCSS--SCCCCSSHHHHHHHHHHHSSCCC-SSCCC
T ss_pred             CCCCCCCcCCCC--CCCeeCChHHHHHHHHHhCCCCC-CCCCC
Confidence            578888888887  88888888888888888888884 88864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2e-09  Score=65.70  Aligned_cols=41  Identities=20%  Similarity=0.367  Sum_probs=23.3

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|+.|++.|.....|..|++ +|++++||.|
T Consensus         2 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSS-GGEKPYKCETCGARFVQVAHLRAHVL-IHTGSGPSSG   42 (42)
T ss_dssp             CCCCC-CSSCSEECTTTCCEESSHHHHHHHTH-HHHSCCSSCC
T ss_pred             CCccc-CCCCCEeCCCcChhhCCHHHHHHHHH-HcCCCCCCCC
Confidence            44455 34455666666666666666666654 5555555554

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=3.6e-09  Score=65.98  Aligned_cols=42  Identities=24%  Similarity=0.342  Sum_probs=21.8

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|+
T Consensus         3 h~~~h-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSG-TGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPS   44 (46)
T ss_dssp             CCCCC-CCSSSCBCTTTCCBCSSSHHHHHHGG-GSCCSCCCCCC
T ss_pred             CCCCc-CCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            34444 33445555555555555555555544 45555555553

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.1e-09  Score=67.70  Aligned_cols=43  Identities=23%  Similarity=0.408  Sum_probs=33.1

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      +|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eox_A            2 SSGS-SGTDSKSYNCNE--CGKAFTRIFHLTRHQKIHTRKSG-PSSG   44 (44)
T ss_dssp             CCCC-CCCCCCCEEETT--TTEEESSSHHHHTTHHHHCCCCC-CSCC
T ss_pred             CCCc-CCCCCCCeECcc--cCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            4666 478888888886  88888888888888888888774 7773

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=4.6e-09  Score=64.79  Aligned_cols=41  Identities=22%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|
T Consensus         3 h~~~h-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSG-AAKTTSECQECGKIFRHSSLLIEHQA-LHAGESGPSS   43 (44)
T ss_dssp             CSCSC-SSSCCCCCTTTCCCCSSHHHHHHHHH-HHTTSCCCCC
T ss_pred             CCCCC-CCCcCeECCCCCcccCCHHHHHHHHH-HHCCCCCCCC
Confidence            45555 44566667677776766666666665 6666666666

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=5.3e-09  Score=64.17  Aligned_cols=39  Identities=23%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      .|+++++|.|..  |++.|.+...|..|+++|++++| |.|+
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNE--CDCRFSEEASLKRHTLQTHSDKS-GPSS   42 (43)
T ss_dssp             CCSSSCCBCCSS--SCCCBSSHHHHHHHHHHHTCTTC-SSSC
T ss_pred             CcCCCCCEECCC--CCCeeCChHHHHHHHHhhCCCCC-ccCC
Confidence            477888888887  88888888888888888888884 8885

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.8e-09  Score=66.49  Aligned_cols=39  Identities=26%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCP  332 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  332 (391)
                      +|++++||.|..  |++.|.+...|.+|++ .|.++++|.|+
T Consensus         6 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eon_A            6 SGTGEKPYKCQV--CGKAFRVSSHLVQHHS-VHSGERPSGPS   44 (46)
T ss_dssp             SCSSCCSCBCSS--SCCBCSSHHHHHHHTT-TTTSCCSCTTS
T ss_pred             CCCCCcccCCCC--CCcccCcHHHHHHHHH-hcCCCCCCCCC
Confidence            455555555544  5555555555555555 35555555554

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=3e-09  Score=65.68  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceec
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C  362 (391)
                      .|++ .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|
T Consensus         2 ~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~~   43 (44)
T 2epv_A            2 SSGS-SGSGEKPYECNE--CGKAFIWKSLLIVHERTHAGVSG-PSS   43 (44)
T ss_dssp             CCCC-CCCCCCSEECSS--SCCEESSHHHHHHHHGGGSSCSC-CCC
T ss_pred             CCCc-ccCCCcCeECCC--CCcccCchHHHHHHHhHhcCCCC-CCC
Confidence            3666 477778888876  88888888888888888877774 765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=3.2e-09  Score=66.22  Aligned_cols=41  Identities=20%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCC-CCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES-TKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~-~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++ ++||.|
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~C   44 (46)
T 2eoy_A            3 SGSSG-QKEKCFKCNKCEKTFSCSKYLTQHER-IHTRGVKSGPS   44 (46)
T ss_dssp             CCCCC-CCSCCEECSSSCCEESSSHHHHHHHT-TCCSCCTTSSS
T ss_pred             Ccccc-CCCCCEECcCCCCcCCCHHHHHHHHH-HcCCCCCCCCC
Confidence            44444 33345555555555555555555544 4554 455554

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.1e-09  Score=66.36  Aligned_cols=41  Identities=24%  Similarity=0.434  Sum_probs=23.6

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|
T Consensus         3 H~~~H-~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSG-TDSKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSS   43 (44)
T ss_dssp             CCCCC-CCCCCEEETTTTEEESSSHHHHTTHH-HHCCCCCCSC
T ss_pred             CCcCC-CCCCCeECcccCcccCCHHHHHHHHH-HhCCCCCCCC
Confidence            55555 34455666666666666666666655 5555566555

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=3.8e-09  Score=65.84  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=22.5

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|+++++|.|..  |++.|.+...|..|++ .|.++++|.|.+
T Consensus         6 ~h~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep0_A            6 SGTGEKPYKCDV--CHKSFRYGSSLTVHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSTTCCSEECSS--SCCEESSHHHHHHHHT-TTSSSCCCSCCC
T ss_pred             CCCCCCCeeCcc--cCcccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            455555555554  5555555555555555 355555555554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.1e-09  Score=67.07  Aligned_cols=43  Identities=30%  Similarity=0.505  Sum_probs=28.6

Q ss_pred             ccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       257 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      +|+++| .++++|.|++|++.|.....|..|++ +|++++||.|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSG-TGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS   44 (46)
T ss_dssp             CCCCCS-CCCCSEECSSSCCEESSSHHHHHHHH-HHHHSCCSSCS
T ss_pred             cccccc-CCCCCeeCcccChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            466666 45566777777777777777777765 66666777664

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=3.7e-09  Score=66.55  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=28.6

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|+++++|.|.++.|++.|.....|..|+++|++++ +|+|..
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~   47 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVK-PSGPSS   47 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCC-SCSSCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCC-CCCCCC
Confidence            467777777761127777777777777777777777 377766

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=6e-09  Score=64.25  Aligned_cols=41  Identities=20%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSG-SGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS   43 (44)
T ss_dssp             CCCCC-CCCCSEECSSSCCEESSHHHHHHHHG-GGSSCSCCCC
T ss_pred             CCccc-CCCcCeECCCCCcccCchHHHHHHHh-HhcCCCCCCC
Confidence            44444 33445555555555555555555544 4555555544

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=6.9e-09  Score=65.35  Aligned_cols=42  Identities=19%  Similarity=0.359  Sum_probs=24.3

Q ss_pred             cCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCc
Q psy11069        292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGK  338 (391)
Q Consensus       292 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~  338 (391)
                      |.++++|.|..  |++.|.+...|..|++ .|.++++|.|.+  |++
T Consensus         7 ~~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~--C~k   48 (48)
T 2epr_A            7 GRTRKQVACEI--CGKIFRDVYHLNRHKL-SHSGEKPYSSGP--SSG   48 (48)
T ss_dssp             CCCCCSEEETT--TTEEESSHHHHHHHGG-GSCSCCCCCSCC--CCC
T ss_pred             CCCCcCeeCCC--CCcccCCHHHHHHHHH-hcCCCCCccCCC--CCC
Confidence            44555666655  6666666666666655 355566666665  553

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=4.5e-09  Score=65.54  Aligned_cols=37  Identities=27%  Similarity=0.499  Sum_probs=18.4

Q ss_pred             CCCccccCcccccCCChhHHHHHHHHhcCCCCcccccc
Q psy11069        265 NPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH  302 (391)
Q Consensus       265 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  302 (391)
                      ++++|.|++|++.|.....|..|++ +|++++||.|..
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytt_A            9 GEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGPSS   45 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHT-HHHHCCCCSCCC
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            3344555555555555555555544 455555555543

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=4.3e-09  Score=63.77  Aligned_cols=38  Identities=29%  Similarity=0.485  Sum_probs=22.9

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceec
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C  362 (391)
                      .|.++++|.|++  |++.|.....|..|+++|++++| |.|
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQE--CGKSFRQKGSLTLHERIHTGSGP-SSG   41 (41)
T ss_dssp             SCCCCCCEECSS--SCCEESSHHHHHHHGGGCCCCSC-SCC
T ss_pred             ccCCCCCeECCC--CCCCcCCHHHHHHHHHHhCCCCC-cCC
Confidence            355666666665  66666666666666666666653 555

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=3.7e-09  Score=65.56  Aligned_cols=39  Identities=28%  Similarity=0.432  Sum_probs=26.8

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      .|.++++|.|.+  |++.|.+...|..|+++|++++| |.|+
T Consensus         6 ~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTH--CGKSFRAKGNLVTHQRIHTGEKS-GPSS   44 (45)
T ss_dssp             CCCSCCSEEETT--TTEEESSHHHHHHHHTTTSSCCC-CCSC
T ss_pred             CCCCCcCccCCC--CCCccCChHHHHHHHHHhCCCCC-CCCC
Confidence            466677777776  77777777777777777777663 7665

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=5.5e-09  Score=64.76  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      .|++++||.|..  |++.|.....|..|++ .|.++++|.|++
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~-~H~~~~~~~C~~   43 (45)
T 2epq_A            4 GSSGEKPYSCPV--CGLRFKRKDRMSYHVR-SHDGSVGKSGPS   43 (45)
T ss_dssp             CCSSCCSSEETT--TTEECSCHHHHHHHHH-HHSCCCCCCCCC
T ss_pred             CcCCCCCCcCCC--CCcccCCHHHHHHHHH-HccCCCCCCCcC
Confidence            344555555544  5555555555555555 255555555554

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.71  E-value=1.3e-08  Score=67.59  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=30.5

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHH-HHhcCCCCceecc
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHM-LQHNENKPKFTCP  363 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~-~~h~~~~~~~~C~  363 (391)
                      .+++++||+|.+.+|+++|.....|.+|+ ++|++++| |.|.
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP-~~~~   62 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP-AFSA   62 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC-CCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC-cccc
Confidence            36777888886545888888888888886 57888884 7775

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.3e-08  Score=63.36  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=19.1

Q ss_pred             CCCccccCcccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        265 NPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       265 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      ++++|.|++|++.|.....|..|++ +|++++||+|.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eom_A            9 GERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCSSSCCCCSSHHHHHHHHH-HHSSCCCSSCC
T ss_pred             CCCCcCCCCCCCeeCChHHHHHHHH-HhCCCCCCCCC
Confidence            3445555555555555555555544 45555555553

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=2.3e-09  Score=74.67  Aligned_cols=65  Identities=17%  Similarity=0.256  Sum_probs=50.2

Q ss_pred             HHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        314 ALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       314 ~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      .|..|++ .|.+.++|.|..  |++.|. ...|..|+ .|.+++ +|.|+.  |++.|. +..|..|++.+.++
T Consensus         4 ~L~~H~~-~~c~~r~~~C~~--C~~~~~-~~~L~~H~-~~c~~~-~~~C~~--C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            4 GSSGHEE-TECPLRLAVCQH--CDLELS-ILKLKEHE-DYCGAR-TELCGN--CGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCSCCCC-CCCCCCCEECSS--SCCEEC-HHHHHHHH-HHHHHC-EEECSS--SCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHHhhCc-ccCCCcccCCcc--cChHhh-HHHHHHHH-hHcCCC-ceEccc--CCCcCc-HHHHHHHHHHccCC
Confidence            4667776 478888888887  888884 88888888 788888 488887  888776 58888888776654

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.65  E-value=1.9e-08  Score=66.72  Aligned_cols=38  Identities=26%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             CCCCccccCc--ccccCCChhHHHHHHHHhcCCCCccccc
Q psy11069        264 TNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCT  301 (391)
Q Consensus       264 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~  301 (391)
                      .+++||+|..  |++.|.....|.+|++.+|++++||.|.
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            4556666653  6666666666666654356666666664

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=2.2e-08  Score=62.89  Aligned_cols=42  Identities=29%  Similarity=0.460  Sum_probs=23.0

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL  333 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  333 (391)
                      +|+++++|+|..+.|++.|.....|..|++ .|.++++|.|.+
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   47 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPSS   47 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHT-TSCCCCSCSSCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            455555666641126666666666666655 355556666554

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=2.9e-08  Score=59.99  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=25.4

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC  331 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  331 (391)
                      +|++++||.|..  |++.|.....|..|++ .|.+++||.|
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQE--CGKSFRQKGSLTLHER-IHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSS--SCCEESSHHHHHHHGG-GCCCCSCSCC
T ss_pred             ccCCCCCeECCC--CCCCcCCHHHHHHHHH-HhCCCCCcCC
Confidence            566666677765  7777777777777766 4666666665

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=2.4e-08  Score=61.12  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=16.4

Q ss_pred             CCccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        266 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       266 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      +++|.|..|++.|.....|..|++ +|++++||.|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C   41 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTL-QTHSDKSGPS   41 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHH-HHTCTTCSSS
T ss_pred             CCCEECCCCCCeeCChHHHHHHHH-hhCCCCCccC
Confidence            344445555555544444544444 4444444444

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=3.4e-08  Score=58.36  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=21.7

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +.+++||.|+...|++.|.+...|.+|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5566666665333666666666666666666654

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.8e-08  Score=61.48  Aligned_cols=39  Identities=31%  Similarity=0.535  Sum_probs=20.9

Q ss_pred             hcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCC
Q psy11069        291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCP  332 (391)
Q Consensus       291 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  332 (391)
                      +|+++++|+|..  |++.|.+...|..|++ .|.++++|.|+
T Consensus         6 ~h~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTH--CGKSFRAKGNLVTHQR-IHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETT--TTEEESSHHHHHHHHT-TTSSCCCCCSC
T ss_pred             CCCCCcCccCCC--CCCccCChHHHHHHHH-HhCCCCCCCCC
Confidence            455555555544  5555555555555555 35555555554

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.55  E-value=3.6e-08  Score=58.87  Aligned_cols=37  Identities=22%  Similarity=0.458  Sum_probs=22.6

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceec
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC  362 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C  362 (391)
                      |+++++|.|.+  |++.|.+...|..|+++|++++| |.+
T Consensus         1 h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~-~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSF--CKREFRSAQALGGHMNVHRRDRA-RLR   37 (39)
T ss_dssp             -CCSSSEECTT--TCCEESSHHHHHHHHHTTCCSCT-TTT
T ss_pred             CCCCCceECCC--CCcccCCHHHHHHHHHHcCCCcc-cee
Confidence            44556666665  66666666666666666666663 543

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=2.4e-09  Score=74.50  Aligned_cols=60  Identities=20%  Similarity=0.310  Sum_probs=32.4

Q ss_pred             hHhccccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhh
Q psy11069        254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNK  320 (391)
Q Consensus       254 ~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~  320 (391)
                      .|..|++++ .+.+++.|..|++.|. ...|..|+  .|.+++||.|+.  |++.|. ...|..|++
T Consensus         4 ~L~~H~~~~-c~~r~~~C~~C~~~~~-~~~L~~H~--~~c~~~~~~C~~--C~~~~~-~~~l~~H~~   63 (75)
T 2d9k_A            4 GSSGHEETE-CPLRLAVCQHCDLELS-ILKLKEHE--DYCGARTELCGN--CGRNVL-VKDLKTHPE   63 (75)
T ss_dssp             CCSCCCCCC-CCCCCEECSSSCCEEC-HHHHHHHH--HHHHHCEEECSS--SCCEEE-TTGGGTHHH
T ss_pred             HHHhhCccc-CCCcccCCcccChHhh-HHHHHHHH--hHcCCCceEccc--CCCcCc-HHHHHHHHH
Confidence            445555555 3445556666665553 55555553  355555555554  555554 355555555

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=6.2e-08  Score=56.96  Aligned_cols=34  Identities=24%  Similarity=0.551  Sum_probs=22.6

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      .|.++++|.|..  |++.|.+...|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPV--CEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETT--TTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCC--CCCccCCHHHHHHHHHHHcCCC
Confidence            366666666665  6666666666666666666655

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.51  E-value=8.4e-08  Score=56.37  Aligned_cols=35  Identities=34%  Similarity=0.650  Sum_probs=20.6

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      |++ .|.+++||.|+.  |++.|.+...|..|+++|++
T Consensus         2 H~~-~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STR-GSTGIKPFQCPD--CDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSS-TTCCSSSBCCTT--TCCCBSSHHHHHHHHGGGTC
T ss_pred             CCC-cCCCCCCccCCC--CCcccCcHHHHHHHHHHhcc
Confidence            444 356666666665  66666666666666666554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.50  E-value=8.2e-09  Score=74.14  Aligned_cols=59  Identities=14%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             cccccCCCCCccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCC
Q psy11069        258 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLN  325 (391)
Q Consensus       258 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  325 (391)
                      |.++| .++++|.|++|++.|.....|..|++ +|++++||+|..  |.    ....|..|.+. |.+
T Consensus        16 ~~~~H-~~~kpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~--~~----~~~~~~~~~~~-~~~   74 (88)
T 1x6f_A           16 GNGPR-LQNSTYQCKHCDSKLQSTAELTSHLN-IHNEEFQKRAKR--QE----RRKQLLSKQKY-ADG   74 (88)
T ss_dssp             CCCSC-CCCSCEECSSSCCEESSHHHHHHHHH-HHHHHHHHHCCC--CS----CCCCCCCCCCC-CCC
T ss_pred             ccccc-CCCCCCcCCCCCCEeCCHHHHHHHHH-HhCCCCCcccch--hh----hHHHHHhhhcc-ccc
Confidence            34445 56688999999999999999999987 888888998865  55    44556667663 554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.50  E-value=8.9e-08  Score=55.42  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=19.3

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      |.++++|.|.+  |++.|.+...|..|+++|++++
T Consensus         2 h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCAL--CLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSS--SCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCC--CcchhCCHHHHHHHHHHHcCCC
Confidence            45555566655  6666666666666666665554

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.49  E-value=3.2e-08  Score=58.24  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=33.0

Q ss_pred             HHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        349 HMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       349 H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      |+++|++++| |.|+.  |++.|.+...|..|++.|+++
T Consensus         2 H~~~h~~~k~-~~C~~--C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKP-FQCPD--CDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSS-BCCTT--TCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCC-ccCCC--CCcccCcHHHHHHHHHHhccC
Confidence            6788999994 99999  999999999999999999874

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.48  E-value=8.7e-08  Score=56.72  Aligned_cols=36  Identities=25%  Similarity=0.477  Sum_probs=24.3

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKP  358 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~  358 (391)
                      |+++++|.|.+++|++.|.+...|.+|+++|++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            456677777633377777777777777777777663

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.48  E-value=1e-07  Score=55.18  Aligned_cols=33  Identities=21%  Similarity=0.447  Sum_probs=19.8

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      |.++++|.|.+  |++.|.+...|..|+++|++++
T Consensus         2 H~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSS--SCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCC--CCcccCCHHHHHHHHHHcCCCC
Confidence            45556666665  6666666666666666665554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.47  E-value=2.3e-09  Score=77.01  Aligned_cols=56  Identities=18%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      .|.++++|.|.+  |++.|.+...|..|+++|++++ +|+|..  |.    .+..|..|.+.|.+
T Consensus        19 ~H~~~kpy~C~~--C~k~F~~~~~L~~H~~~Ht~ek-p~~C~~--~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           19 PRLQNSTYQCKH--CDSKLQSTAELTSHLNIHNEEF-QKRAKR--QE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             SCCCCSCEECSS--SCCEESSHHHHHHHHHHHHHHH-HHHCCC--CS----CCCCCCCCCCCCCC
T ss_pred             ccCCCCCCcCCC--CCCEeCCHHHHHHHHHHhCCCC-Ccccch--hh----hHHHHHhhhccccc
Confidence            367777777776  7777777777777777777777 477766  44    34455556555554

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=1.5e-07  Score=55.47  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             hcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        353 HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       353 h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +++++ ||+|+..+|+++|.+++.|.+|+++|++++
T Consensus         4 ~~gek-p~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            4 GSSGI-LLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             SSCCC-CEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCC-CCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            57888 499974459999999999999999998864

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.41  E-value=2.4e-07  Score=52.91  Aligned_cols=32  Identities=38%  Similarity=0.678  Sum_probs=24.7

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCCCCcee
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFT  361 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~  361 (391)
                      +||.|..  |++.|.+...|..|+++|++++| |.
T Consensus         1 kp~~C~~--C~k~F~~~~~L~~H~~~H~~~~~-~~   32 (33)
T 1rim_A            1 YKFACPE--CPKRFMRSDHLSKHITLHELLGE-ER   32 (33)
T ss_dssp             CCCCCSS--SCCCCSSHHHHHHHHHHHTTTCC-CC
T ss_pred             CcccCCC--CCchhCCHHHHHHHHHHhCCCCC-CC
Confidence            4678876  88888888888888888888774 54

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.40  E-value=6.1e-07  Score=59.81  Aligned_cols=57  Identities=23%  Similarity=0.430  Sum_probs=39.8

Q ss_pred             cCCCCCCCCcccCChHHHHHHH-HHhcCCC-----CceeccCcCcccccccchhHHHHHHhhc
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHM-LQHNENK-----PKFTCPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~-~~h~~~~-----~~~~C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      |.|...+|++.|.+...|..|+ +.|.+.+     +.|.|...+|++.+.....|..|++..|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            4566666777777777777777 3565543     2477876668877777777888877765

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.38  E-value=2.4e-07  Score=54.42  Aligned_cols=34  Identities=24%  Similarity=0.500  Sum_probs=22.8

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |+++++|.|.+.+|++.|.+...|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5666777776333777777777777777777665

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.37  E-value=2.6e-07  Score=54.96  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=19.8

Q ss_pred             cCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCC
Q psy11069        292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC  331 (391)
Q Consensus       292 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  331 (391)
                      |++++||.|..  |++.|.+...|..|++ .|.++++|.+
T Consensus         1 h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSF--CKREFRSAQALGGHMN-VHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTT--TCCEESSHHHHHHHHH-TTCCSCTTTT
T ss_pred             CCCCCceECCC--CCcccCCHHHHHHHHH-HcCCCcccee
Confidence            34455555554  5555555555555555 3555555544

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=4.7e-07  Score=52.65  Aligned_cols=33  Identities=27%  Similarity=0.544  Sum_probs=23.9

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      .|.++++|.|.+  |++.|.+...|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDM--CGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTT--TCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCc--CCCCcCchHHHHHHHHHhcCC
Confidence            366677777776  777777777777777777665

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=3.5e-07  Score=53.21  Aligned_cols=32  Identities=19%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |.++++|.|.+  |++.|.....|..|+++|+++
T Consensus         4 h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQ--CSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSS--SSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCC--CCcccCCHHHHHHHHHHccCC
Confidence            55566666665  666666666666666666554

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.34  E-value=1.1e-07  Score=59.33  Aligned_cols=34  Identities=26%  Similarity=0.583  Sum_probs=21.0

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |.++++|.|.+..|++.|.....|..|+++|+++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            6666666664223666666666666666666654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=1.5e-07  Score=55.28  Aligned_cols=35  Identities=20%  Similarity=0.504  Sum_probs=31.8

Q ss_pred             HHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       351 ~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      ++|++++ +|.|+.  |++.|.+...|..|++.|++++
T Consensus         2 ~~h~~~k-~~~C~~--C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            2 SSGSSGR-SYSCPV--CEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCC-CCEETT--TTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCC-CcCCCC--CCCccCCHHHHHHHHHHHcCCC
Confidence            5688898 499999  9999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.33  E-value=3.7e-07  Score=52.04  Aligned_cols=31  Identities=26%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCCCccc
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFK  299 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~  299 (391)
                      +|.|++||+.|.....|..|++ +|+++++|.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT-LHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH-HHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHH-HhCCCCCCC
Confidence            5666666666666666666655 566666653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=4e-07  Score=52.98  Aligned_cols=32  Identities=25%  Similarity=0.471  Sum_probs=18.1

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |.++++|.|.+  |++.|.+...|..|+++|+++
T Consensus         4 h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSL--CEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SCCCCSEECSS--SSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCccCCC--CCchhCCHHHHHHHHHHhccC
Confidence            55555555554  555555555555555555543

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=3.6e-07  Score=53.22  Aligned_cols=31  Identities=23%  Similarity=0.534  Sum_probs=15.8

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      |.++++|.|.+  |++.|.....|..|+++|++
T Consensus         4 h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHI--CERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             SCCCCCEECSS--SCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCeECCC--CCCccCCHHHHHHHHHHhcC
Confidence            44445555554  55555555555555555544

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=4.3e-07  Score=53.22  Aligned_cols=32  Identities=28%  Similarity=0.594  Sum_probs=18.1

Q ss_pred             CCCCCccCCCCCCCCcccCCh-HHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRS-EHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~-~~L~~H~~~h~~~  356 (391)
                      |.++++|.|..  |++.|... ..|..|+++|+++
T Consensus         4 h~~~k~~~C~~--C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            4 GSSGRAMKCPY--CDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCCCCEECSS--SSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCeECCC--CChhhccCHHHHHHHHHhcCCC
Confidence            55555555554  55555555 5555555555544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.2e-06  Score=58.37  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=43.5

Q ss_pred             cccccCCcCccccCHHHHHHhhhccCCCCC------ccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        298 FKCTHDGCKLLFSSKSALKRHNKSKHLNMR------MFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       298 ~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~------~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      +.|...+|++.|.+...|..|+...|.+.+      +|.|...+|++.+.....|..|++..|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            456666788888888888888754676554      788887788888888888888887653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=6.4e-07  Score=52.10  Aligned_cols=32  Identities=28%  Similarity=0.553  Sum_probs=19.0

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |.++++|.|..  |++.|.....|..|+++|+++
T Consensus         4 ~~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEY--CNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTT--TCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCC--CCceeCCHHHHHHHHHHhCCC
Confidence            45555666665  666666666666666666554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.27  E-value=5.2e-07  Score=52.04  Aligned_cols=34  Identities=24%  Similarity=0.617  Sum_probs=30.5

Q ss_pred             HhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        352 QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       352 ~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +|++++ +|.|+.  |++.|.+...|..|++.|+++.
T Consensus         1 ~h~~~k-~~~C~~--C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            1 GSSGSS-GYVCAL--CLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCC-SEECSS--SCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCC-CeECCC--CcchhCCHHHHHHHHHHHcCCC
Confidence            367888 599999  9999999999999999998875

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=7e-07  Score=52.36  Aligned_cols=31  Identities=19%  Similarity=0.446  Sum_probs=14.6

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHH-HHHhcC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEH-MLQHNE  355 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H-~~~h~~  355 (391)
                      |.+++||.|..  |++.|.+...|..| +++|++
T Consensus         4 H~~~k~~~C~~--C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            4 GSSGHLYYCSQ--CHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSCEEECSS--SSCEEECHHHHHHHHHHHTCC
T ss_pred             cCCCcCeECCC--CCcccCCHHHHHHHHHHHccC
Confidence            44444444443  44444444444444 444443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=7.9e-07  Score=52.05  Aligned_cols=35  Identities=20%  Similarity=0.495  Sum_probs=30.8

Q ss_pred             HHhcCCCCceeccCcCcccccccc-hhHHHHHHhhcCCC
Q psy11069        351 LQHNENKPKFTCPYQDCLMSYVAK-SSLYAHLKHVHSTN  388 (391)
Q Consensus       351 ~~h~~~~~~~~C~~~~C~~~f~~~-~~L~~H~~~~H~~~  388 (391)
                      ++|++++ +|.|+.  |++.|.+. ..|..|++.|++++
T Consensus         2 ~~h~~~k-~~~C~~--C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGR-AMKCPY--CDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCC-CEECSS--SSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCC-CeECCC--CChhhccCHHHHHHHHHhcCCCC
Confidence            4688888 599999  99999999 99999999998763

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.16  E-value=1.2e-06  Score=50.44  Aligned_cols=33  Identities=27%  Similarity=0.488  Sum_probs=18.3

Q ss_pred             cCCCCccccccCCcCccccCHHHHHHhhhccCCCCC
Q psy11069        292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMR  327 (391)
Q Consensus       292 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  327 (391)
                      |++++||.|..  |++.|.+...|..|++ .|.+++
T Consensus         2 H~~~k~~~C~~--C~k~f~~~~~l~~H~~-~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRI--CLSAFTTKANCARHLK-VHTDTL   34 (35)
T ss_dssp             CSCCSCEECSS--SCCEESSHHHHHHHHG-GGTSCC
T ss_pred             CCCCcCeeCCC--CCcccCCHHHHHHHHH-HcCCCC
Confidence            45555566654  6666666666666655 355443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=1.2e-06  Score=50.86  Aligned_cols=34  Identities=24%  Similarity=0.522  Sum_probs=30.2

Q ss_pred             HhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        352 QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       352 ~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +|++++ +|.|+.  |++.|.....|..|++.|++++
T Consensus         3 ~h~~~k-~~~C~~--C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGK-PYKCPQ--CSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCC-SEECSS--SSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCC-CCCCCC--CCcccCCHHHHHHHHHHccCCC
Confidence            477888 599999  9999999999999999998763

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.15  E-value=9.1e-07  Score=55.37  Aligned_cols=34  Identities=21%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHH-HhcCCCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHML-QHNENKP  358 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~  358 (391)
                      |+++++|.|.+  |++.|.+...|..|++ +|+++.+
T Consensus         2 Ht~~kp~~C~~--C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDI--CGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTT--TCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCC--cCcccCCHHHHHHHhhhhcCCCCC
Confidence            66777777776  7777777777777777 7766653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.15  E-value=5.6e-07  Score=52.78  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             HHhcCCCCceeccCcCcccccccchhHHHH-HHhhcCC
Q psy11069        351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAH-LKHVHST  387 (391)
Q Consensus       351 ~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H-~~~~H~~  387 (391)
                      ++|++++ +|.|+.  |++.|.++..|..| ++.|+++
T Consensus         2 ~~H~~~k-~~~C~~--C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGH-LYYCSQ--CHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSC-EEECSS--SSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCc-CeECCC--CCcccCCHHHHHHHHHHHccCc
Confidence            5788998 599999  99999999999999 8877664

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.15  E-value=9.6e-07  Score=51.30  Aligned_cols=33  Identities=27%  Similarity=0.493  Sum_probs=29.9

Q ss_pred             HhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        352 QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       352 ~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      +|++++ +|.|+.  |++.|.+...|..|++.|+++
T Consensus         3 ~h~~~k-~~~C~~--C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGK-PFKCSL--CEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCC-SEECSS--SSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCC-CccCCC--CCchhCCHHHHHHHHHHhccC
Confidence            578888 599999  999999999999999998875

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.14  E-value=2.5e-06  Score=57.08  Aligned_cols=39  Identities=31%  Similarity=0.623  Sum_probs=30.6

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY  364 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~  364 (391)
                      .|.+++||.|..  |++.|.+...|.+|+++|+++.  ..+.+
T Consensus         7 ~~~~ekpy~C~~--CgK~F~~~s~L~~H~r~Htg~~--~~~~~   45 (66)
T 2epp_A            7 GLREAGILPCGL--CGKVFTDANRLRQHEAQHGVTS--LQLGY   45 (66)
T ss_dssp             SCCCCCCCCCTT--TCCCCSCHHHHHHHHHHHTTTS--CCCCS
T ss_pred             CCCCccCcCCCC--CCCccCCHHHHHhhhhhhCCCc--ccccc
Confidence            367788888887  8888888888888888888765  44544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=1e-06  Score=51.21  Aligned_cols=33  Identities=9%  Similarity=0.174  Sum_probs=29.7

Q ss_pred             HhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        352 QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       352 ~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      .|++++ +|.|+.  |++.|.....|..|+++|+++
T Consensus         3 ~h~~~k-~~~C~~--C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGL-LYDCHI--CERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCC-CEECSS--SCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCC-CeECCC--CCCccCCHHHHHHHHHHhcCC
Confidence            577888 599999  999999999999999998775

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.12  E-value=2.1e-06  Score=48.23  Aligned_cols=30  Identities=33%  Similarity=0.680  Sum_probs=14.6

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +||.|.+..|++.|.+...|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            345554111555555555555555555443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.09  E-value=1.3e-06  Score=51.49  Aligned_cols=32  Identities=34%  Similarity=0.681  Sum_probs=15.7

Q ss_pred             CCccccC--cccccCCChhHHHHHHHHhcCCCCcc
Q psy11069        266 PEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNF  298 (391)
Q Consensus       266 ~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~  298 (391)
                      +++|.|.  .|++.|.....|..|++ +|+++++|
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~   37 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKH-KHEMTLKF   37 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHH-HHHTTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHH-HhCCCCCC
Confidence            3445555  35555555555555544 45444443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.09  E-value=2.2e-06  Score=47.82  Aligned_cols=29  Identities=41%  Similarity=0.725  Sum_probs=13.9

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      ||.|.+..|++.|.+...|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            45554111555555555555555555443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.08  E-value=3e-06  Score=46.20  Aligned_cols=27  Identities=37%  Similarity=0.853  Sum_probs=15.0

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      ||.|..  |++.|.....|..|+++|+++
T Consensus         2 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEV--CTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTT--TCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCC--CCcccCCHHHHHHHHHHhcCC
Confidence            455554  555555555555555555543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=2.1e-06  Score=49.74  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             HhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        352 QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       352 ~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      .|++++ +|.|+.  |++.|.+...|..|++.|++++
T Consensus         3 ~h~~~~-~~~C~~--C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGK-THLCDM--CGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCS-SCBCTT--TCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCC-CeecCc--CCCCcCchHHHHHHHHHhcCCC
Confidence            467788 599999  9999999999999999998763

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=2.4e-06  Score=47.00  Aligned_cols=20  Identities=30%  Similarity=0.652  Sum_probs=8.6

Q ss_pred             CCcccCChHHHHHHHHHhcC
Q psy11069        336 CGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h~~  355 (391)
                      |++.|.....|..|+++|++
T Consensus         9 C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            9 CGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             TCCEESCHHHHHHHHHTTCC
T ss_pred             CCcccCCHHHHHHHHHHhcc
Confidence            44444444444444444433

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=2.8e-06  Score=49.25  Aligned_cols=34  Identities=35%  Similarity=0.555  Sum_probs=29.8

Q ss_pred             HhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        352 QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       352 ~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      .|.+++ +|.|+.  |++.|.....|..|++.|++++
T Consensus         3 ~~~~~k-~~~C~~--C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGK-IFTCEY--CNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCC-CEECTT--TCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCC-CEECCC--CCceeCCHHHHHHHHHHhCCCC
Confidence            366778 599999  9999999999999999998763

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.06  E-value=1.9e-06  Score=53.90  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=28.5

Q ss_pred             HhcCCCCceeccCcCcccccccchhHHHHHH-hhcCCC
Q psy11069        352 QHNENKPKFTCPYQDCLMSYVAKSSLYAHLK-HVHSTN  388 (391)
Q Consensus       352 ~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~~H~~~  388 (391)
                      +|++++| |.|..  |++.|.....|..|++ .|.++.
T Consensus         1 ~Ht~~kp-~~C~~--C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKP-YACDI--CGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSC-EECTT--TCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcC-EECCC--cCcccCCHHHHHHHhhhhcCCCC
Confidence            4788994 99999  9999999999999999 777654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.06  E-value=1.5e-06  Score=50.34  Aligned_cols=26  Identities=31%  Similarity=0.545  Sum_probs=14.6

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHH
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHM  350 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~  350 (391)
                      +.+++||.|..  |+++|.+.+.|.+|+
T Consensus         3 ~~gekp~~C~~--CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLP--CGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETT--TTEECSCHHHHHHHH
T ss_pred             CCCccCeECCC--CCCccCCHhHccCcC
Confidence            34555555554  555555555555555

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.05  E-value=4.8e-07  Score=56.37  Aligned_cols=41  Identities=12%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             HHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        347 QEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       347 ~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      ..|+..|++++ +|.|++.+|++.|...+.|..|+++|++++
T Consensus         7 ~~~~~~H~~~k-~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDK-TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTT-EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCC-CeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            44556799999 599952239999999999999999998763

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.03  E-value=2.1e-06  Score=49.77  Aligned_cols=24  Identities=33%  Similarity=0.800  Sum_probs=12.1

Q ss_pred             CCCccccCcccccCCChhHHHHHH
Q psy11069        265 NPEDLVCKGCGKQFKVPCRLREHY  288 (391)
Q Consensus       265 ~~~~~~C~~C~~~f~~~~~l~~H~  288 (391)
                      +++||.|+.||+.|...+.|.+|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            344555555555555555555553

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.03  E-value=2.4e-06  Score=46.65  Aligned_cols=25  Identities=24%  Similarity=0.575  Sum_probs=12.6

Q ss_pred             eeccCcCcccccccchhHHHHHHhhcC
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      |.|+.  |++.|.+...|..|++.|++
T Consensus         3 ~~C~~--C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            3 FACPE--CPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             EECSS--SSCEESCSHHHHHHHTGGGS
T ss_pred             ccCCC--CCchhCCHHHHHHHHHHhcC
Confidence            45544  55555555555555554443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.03  E-value=4.4e-06  Score=45.87  Aligned_cols=27  Identities=19%  Similarity=0.454  Sum_probs=13.2

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +|.|..  |++.|.....|..|+++|+++
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQY--CEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSS--SSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCC--CCCccCCHHHHHHHHHHHccC
Confidence            344544  555555555555555554443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=3.6e-06  Score=45.87  Aligned_cols=27  Identities=33%  Similarity=0.667  Sum_probs=13.5

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +|.|..  |++.|.+...|..|+++|+++
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRE--CGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTT--TSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCC--CCCccCChhHHHHHHHHhcCC
Confidence            444554  555555555555555555443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.98  E-value=4.4e-06  Score=45.46  Aligned_cols=27  Identities=30%  Similarity=0.618  Sum_probs=13.2

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      ||.|..  |++.|.....|..|+++|+++
T Consensus         2 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPH--CDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSS--CCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCC--CCcccCCHHHHHHHHHHhccC
Confidence            444544  555555555555555554443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.95  E-value=4.3e-06  Score=44.85  Aligned_cols=17  Identities=24%  Similarity=0.329  Sum_probs=7.2

Q ss_pred             cccccccchhHHHHHHh
Q psy11069        367 CLMSYVAKSSLYAHLKH  383 (391)
Q Consensus       367 C~~~f~~~~~L~~H~~~  383 (391)
                      |++.|.+...|..|++.
T Consensus         9 C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            9 CPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             SSCEESSHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHH
Confidence            44444444444444433

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.95  E-value=4.1e-07  Score=51.46  Aligned_cols=30  Identities=27%  Similarity=0.497  Sum_probs=16.6

Q ss_pred             ccccccCCcCccccCHHHHHHhhhccCCCCCcc
Q psy11069        297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMF  329 (391)
Q Consensus       297 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  329 (391)
                      ||+|..  |++.|...+.|..|++ .|++++||
T Consensus         2 p~~C~~--C~k~f~~~~~L~~H~~-~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPA--CPKRFMRSDALSKHIK-TAFIVVAL   31 (32)
T ss_dssp             CSSSSS--SCTTHHHHHTTSSSTT-SSSSSSSC
T ss_pred             CCCCCC--CCcccCCHHHHHHHHH-HHccCCCC
Confidence            455544  5555555555555555 35555554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.94  E-value=3.7e-06  Score=45.48  Aligned_cols=23  Identities=17%  Similarity=0.499  Sum_probs=10.2

Q ss_pred             eeccCcCcccccccchhHHHHHHhh
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      |.|+.  |++.|.+...|..|++.|
T Consensus         4 ~~C~~--C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            4 YSCSV--CGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             EECSS--SCCEESCHHHHHHHHTTS
T ss_pred             ccCCC--CCcccCCHHHHHHHHHhc
Confidence            44444  444444444444444443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.93  E-value=5.3e-06  Score=48.43  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=29.6

Q ss_pred             hcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        353 HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       353 h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      |++++ +|.|.+.+|++.|.+.+.|..|+++|+++.
T Consensus         3 ~~~~k-~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKK-QHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCC-CEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCC-CCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            67888 599973349999999999999999998763

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.15  E-value=1.4e-06  Score=47.74  Aligned_cols=19  Identities=42%  Similarity=0.831  Sum_probs=8.2

Q ss_pred             CCcccCChHHHHHHHHHhc
Q psy11069        336 CGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h~  354 (391)
                      |++.|.+...|..|+++|+
T Consensus         8 C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            8 CGKAFTQASSLIAHVRQHT   26 (29)
Confidence            4444444444444444443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.89  E-value=6.2e-06  Score=44.09  Aligned_cols=18  Identities=39%  Similarity=0.534  Sum_probs=7.5

Q ss_pred             cccccccchhHHHHHHhh
Q psy11069        367 CLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       367 C~~~f~~~~~L~~H~~~~  384 (391)
                      |++.|.+...|..|++.|
T Consensus         7 C~k~f~~~~~l~~H~~~h   24 (27)
T 1znf_A            7 CERSFVEKSALSRHQRVH   24 (27)
T ss_dssp             SCCBCSSHHHHHHHGGGT
T ss_pred             CCCcCCCHHHHHHHHHHc
Confidence            444444444444444433

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.89  E-value=3.4e-06  Score=45.33  Aligned_cols=23  Identities=26%  Similarity=0.647  Sum_probs=11.2

Q ss_pred             eeccCcCcccccccchhHHHHHHhh
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      |.|+.  |++.|...+.|..|++.|
T Consensus         4 ~~C~~--C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            4 YRCPL--CRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             EEETT--TTEEESCHHHHHHHHTTC
T ss_pred             cCCCC--CCcccCCHHHHHHHHHhc
Confidence            44544  555555555555554443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.10  E-value=1.8e-06  Score=47.62  Aligned_cols=19  Identities=32%  Similarity=0.611  Sum_probs=8.3

Q ss_pred             CCcccCChHHHHHHHHHhc
Q psy11069        336 CGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h~  354 (391)
                      |++.|.+...|..|+++|+
T Consensus         9 C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            9 CQRQFADPGALQRHVRIHT   27 (30)
Confidence            4444444444444444443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.84  E-value=1.3e-05  Score=44.88  Aligned_cols=28  Identities=21%  Similarity=0.451  Sum_probs=25.4

Q ss_pred             ceecc--CcCcccccccchhHHHHHHhhcCCC
Q psy11069        359 KFTCP--YQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       359 ~~~C~--~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +|.|+  .  |++.|.+...|..|+++|+++.
T Consensus         3 ~~~C~~~~--C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            3 PYSCDHPG--CDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             SBCCCCTT--CCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCcCcCCC--CCCccCCHHHHHHHHHHccCCC
Confidence            59998  7  9999999999999999998763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.83  E-value=1.1e-05  Score=44.23  Aligned_cols=29  Identities=34%  Similarity=0.694  Sum_probs=26.7

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCCCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      +|.|+.  |++.|...+.|..|++.|+++++
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            2 TYQCQY--CEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCSS--SSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CccCCC--CCCccCCHHHHHHHHHHHccCCC
Confidence            599999  99999999999999999998764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=1.2e-05  Score=43.99  Aligned_cols=28  Identities=25%  Similarity=0.552  Sum_probs=25.6

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +|.|+.  |++.|.....|..|++.|++++
T Consensus         3 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            3 PYQCDY--CGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CEECTT--TCCEESCHHHHHHHHHTTCCCC
T ss_pred             CccCCC--CCcccCCHHHHHHHHHHhccCC
Confidence            599999  9999999999999999988763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.81  E-value=2.6e-06  Score=47.99  Aligned_cols=28  Identities=36%  Similarity=0.682  Sum_probs=17.7

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      ||.|..  |++.|.+...|..|+++|++++
T Consensus         2 p~~C~~--C~k~f~~~~~L~~H~~~H~~~k   29 (32)
T 2kfq_A            2 AFACPA--CPKRFMRSDALSKHIKTAFIVV   29 (32)
T ss_dssp             CSSSSS--SCTTHHHHHTTSSSTTSSSSSS
T ss_pred             CCCCCC--CCcccCCHHHHHHHHHHHccCC
Confidence            566665  6666666666666666666665

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.80  E-value=9.5e-06  Score=43.31  Aligned_cols=27  Identities=30%  Similarity=0.663  Sum_probs=23.8

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      ||.|..  |++.|.+...|..|+++|+++
T Consensus         1 ~~~C~~--C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGL--CERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSS--SCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCC--CCCcCCCHHHHHHHHHHcCCC
Confidence            589997  999999999999999999864

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.79  E-value=1.1e-05  Score=43.44  Aligned_cols=28  Identities=32%  Similarity=0.756  Sum_probs=25.6

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      +++|.|..  |++.|.+...|..|+++|++
T Consensus         1 ~k~~~C~~--C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSV--CGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSS--SCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCC--CCcccCCHHHHHHHHHhcCC
Confidence            47899998  99999999999999999874

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.77  E-value=1.5e-05  Score=43.26  Aligned_cols=29  Identities=48%  Similarity=0.949  Sum_probs=26.6

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      +||.|+.  |++.|.+...|..|+++|++++
T Consensus         1 k~~~C~~--C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPE--CPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSS--SSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCC--CCchhCCHHHHHHHHHHhcCCC
Confidence            5799997  9999999999999999998864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.76  E-value=2e-05  Score=43.73  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=9.3

Q ss_pred             cccccCCChhHHHHHHHHhcCC
Q psy11069        273 GCGKQFKVPCRLREHYKAVHES  294 (391)
Q Consensus       273 ~C~~~f~~~~~l~~H~~~~H~~  294 (391)
                      .||+.|.....|..|++ +|++
T Consensus         9 ~C~k~f~~~~~L~~H~~-~H~~   29 (31)
T 1sp2_A            9 YCGKRFTRSDELQRHKR-THTG   29 (31)
T ss_dssp             TCCCBCSSHHHHHHHHT-TTSC
T ss_pred             CCCcccCCHhHHHHHHH-HhcC
Confidence            44444444444444443 3433

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.76  E-value=1.6e-05  Score=43.55  Aligned_cols=27  Identities=22%  Similarity=0.440  Sum_probs=13.0

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCC
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHES  294 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~  294 (391)
                      +|.|+.|++.|.....|..|++.+|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            345555555555555555552224443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.75  E-value=1.2e-05  Score=43.03  Aligned_cols=27  Identities=30%  Similarity=0.593  Sum_probs=24.7

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      ++||.|..  |++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~--C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPL--CRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETT--TTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCC--CCcccCCHHHHHHHHHhcC
Confidence            47899998  9999999999999999874

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.75  E-value=1.2e-05  Score=44.05  Aligned_cols=14  Identities=21%  Similarity=0.529  Sum_probs=5.9

Q ss_pred             cccccccchhHHHH
Q psy11069        367 CLMSYVAKSSLYAH  380 (391)
Q Consensus       367 C~~~f~~~~~L~~H  380 (391)
                      |++.|.+...|..|
T Consensus         8 C~k~f~~~~~l~~H   21 (30)
T 1paa_A            8 CNRAFTRRDLLIRH   21 (30)
T ss_dssp             TCCBCSSSHHHHHH
T ss_pred             cCcccCChHHHHHH
Confidence            44444444444444

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.75  E-value=1.6e-05  Score=42.49  Aligned_cols=27  Identities=22%  Similarity=0.508  Sum_probs=24.8

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      ++||.|..  |++.|.+...|..|+++|+
T Consensus         1 ek~~~C~~--C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSL--CPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSS--SSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCC--cChhhCCHHHHHHHHHHcc
Confidence            47899997  9999999999999999885

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.74  E-value=1.7e-05  Score=43.03  Aligned_cols=27  Identities=19%  Similarity=0.507  Sum_probs=25.2

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      +|.|+.  |++.|.+...|..|++.|+++
T Consensus         2 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEV--CTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTT--TCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCC--CCcccCCHHHHHHHHHHhcCC
Confidence            599999  999999999999999999875

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.73  E-value=1.9e-05  Score=52.73  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             hcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        353 HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       353 h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +.+++ +|+|..  |++.|.++..|.+|+++|+++.
T Consensus         8 ~~~ek-py~C~~--CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAG-ILPCGL--CGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCC-CCCCTT--TCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCcc-CcCCCC--CCCccCCHHHHHhhhhhhCCCc
Confidence            55677 599999  9999999999999999999864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.91  E-value=4.4e-06  Score=44.33  Aligned_cols=17  Identities=35%  Similarity=0.692  Sum_probs=7.3

Q ss_pred             cccccccchhHHHHHHh
Q psy11069        367 CLMSYVAKSSLYAHLKH  383 (391)
Q Consensus       367 C~~~f~~~~~L~~H~~~  383 (391)
                      |++.|.+...|..|++.
T Consensus         8 C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            8 CGKRFVQSSQLANHIRH   24 (26)
Confidence            44444444444444433

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.68  E-value=2.1e-05  Score=42.55  Aligned_cols=28  Identities=29%  Similarity=0.468  Sum_probs=25.7

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +|.|+.  |++.|.....|..|++.|+++.
T Consensus         2 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            2 EHKCPH--CDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCSS--CCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCcCCC--CCcccCCHHHHHHHHHHhccCC
Confidence            599999  9999999999999999998763

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.64  E-value=2.5e-05  Score=42.27  Aligned_cols=28  Identities=18%  Similarity=0.395  Sum_probs=25.7

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +|.|+.  |++.|.+...|..|++.|+++.
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            2 PLKCRE--CGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CEECTT--TSCEESCHHHHHHHHHHHHTCC
T ss_pred             CccCCC--CCCccCChhHHHHHHHHhcCCC
Confidence            599999  9999999999999999998763

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.63  E-value=2e-05  Score=42.72  Aligned_cols=19  Identities=26%  Similarity=0.307  Sum_probs=9.8

Q ss_pred             cccccccchhHHHHHHhhc
Q psy11069        367 CLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       367 C~~~f~~~~~L~~H~~~~H  385 (391)
                      |++.|.+.+.|..|+++|+
T Consensus        10 C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A           10 CGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             TCEEESSHHHHHHHHGGGT
T ss_pred             CcCccCCHHHHHHHHHHhC
Confidence            5555555555555555443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.79  E-value=7.7e-06  Score=44.91  Aligned_cols=27  Identities=15%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      +|.|+.  |++.|.+...|..|++.|+++
T Consensus         3 ~~~C~~--C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            3 PYVCIH--CQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            599999  999999999999999999875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.75  E-value=8.9e-06  Score=44.32  Aligned_cols=27  Identities=26%  Similarity=0.485  Sum_probs=25.1

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      +|.|+.  |++.|.....|..|++.|+++
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVM--CGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            599999  999999999999999999875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.43  E-value=7.1e-05  Score=40.42  Aligned_cols=29  Identities=28%  Similarity=0.611  Sum_probs=24.6

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      ++|.|.+..|++.|.+...|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            47899922399999999999999999974

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.53  E-value=2.2e-05  Score=41.45  Aligned_cols=26  Identities=35%  Similarity=0.869  Sum_probs=23.9

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      +||.|..  |++.|.+...|..|+++|+
T Consensus         1 kp~~C~~--C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCER--CGKRFVQSSQLANHIRHHD   26 (26)
Confidence            5799997  9999999999999999874

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.95  E-value=0.0075  Score=48.64  Aligned_cols=48  Identities=15%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhh
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNK  320 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~  320 (391)
                      +..|+.|+..+ .+..|..|+. ..-..++..|+.  |+..+.. ..|..|..
T Consensus       110 ~v~C~~C~~~~-~r~~l~~H~~-~~C~~r~~~C~~--C~~~~~~-~~l~~H~~  157 (170)
T 3hcs_A          110 LMDCPQCQRPF-QKFHINIHIL-KDCPRRQVSCDN--CAASMAF-EDKEIHDQ  157 (170)
T ss_dssp             EEECTTTCCEE-EGGGHHHHHH-HTCTTCEEECTT--TCCEEEG-GGHHHHHT
T ss_pred             eeECCCCChHH-HHHHHHHHhh-hhCCCCCeECCC--CCCccCH-HHHHhHHH
Confidence            44455555544 3444555543 233344444544  5444422 23444444

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.90  E-value=0.0021  Score=49.05  Aligned_cols=78  Identities=18%  Similarity=0.325  Sum_probs=39.5

Q ss_pred             CccccCcccccCCChhHHHHHHH-HhcCCC-Ccccccc----CCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCccc
Q psy11069        267 EDLVCKGCGKQFKVPCRLREHYK-AVHEST-KNFKCTH----DGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSF  340 (391)
Q Consensus       267 ~~~~C~~C~~~f~~~~~l~~H~~-~~H~~~-~~~~C~~----~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f  340 (391)
                      +++.|.+|...|.+...+..|+. ..|... +.|.+..    ..=+..+...    .+.. .+.+.+.|.|.+  |++.|
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~C~~--C~~~f  103 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEI-SDGEDRSKCCPV--CNMTF  103 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCC-SSCCCTTTEETT--TTEEC
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----cccc-ccCCCCCeEcCC--CCCEe
Confidence            45677777777777777777762 134221 2233211    0001111110    0111 244555666776  77777


Q ss_pred             CChHHHHHHHH
Q psy11069        341 LRSEHLQEHML  351 (391)
Q Consensus       341 ~~~~~L~~H~~  351 (391)
                      .+...|..|+.
T Consensus       104 ~s~~~~~~H~~  114 (127)
T 1zu1_A          104 SSPVVAESHYI  114 (127)
T ss_dssp             SSHHHHHHHHT
T ss_pred             CCHHHHHHHHC
Confidence            77777766663

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.69  E-value=0.0078  Score=48.52  Aligned_cols=104  Identities=18%  Similarity=0.367  Sum_probs=66.5

Q ss_pred             ccCcccccCCChh-----HHHHHHHHhcCCCCccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChH
Q psy11069        270 VCKGCGKQFKVPC-----RLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSE  344 (391)
Q Consensus       270 ~C~~C~~~f~~~~-----~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  344 (391)
                      .|+.|...+....     .+.+-+.     .....|+..+|+..+. ...|..|..  .-.-++..|+.  |+..+ ...
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i~-----~l~v~C~n~GC~~~~~-~~~l~~H~~--~C~~~~v~C~~--C~~~~-~r~  123 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREIL-----SLMVKCPNEGCLHKME-LRHLEDHQA--HCEFALMDCPQ--CQRPF-QKF  123 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHH-----TSEEECCSTTCCCEEE-GGGHHHHHT--TCTTSEEECTT--TCCEE-EGG
T ss_pred             CCCCCccCcchhhhhhhHHHHHHHh-----hcccCCCCCCCCceec-HhHHHHHHh--cCCceeeECCC--CChHH-HHH
Confidence            6777777665431     1222211     3456776557887654 456777764  34446677874  88887 667


Q ss_pred             HHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        345 HLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       345 ~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      .|..|+...-..+ ...|+.  |+..+. ...|..|...+.|+.
T Consensus       124 ~l~~H~~~~C~~r-~~~C~~--C~~~~~-~~~l~~H~~~~~~~~  163 (170)
T 3hcs_A          124 HINIHILKDCPRR-QVSCDN--CAASMA-FEDKEIHDQNCPLAL  163 (170)
T ss_dssp             GHHHHHHHTCTTC-EEECTT--TCCEEE-GGGHHHHHTTCCC--
T ss_pred             HHHHHhhhhCCCC-CeECCC--CCCccC-HHHHHhHHHhCcChh
Confidence            7888887666666 478888  888775 467888887776653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.32  E-value=0.017  Score=43.94  Aligned_cols=80  Identities=23%  Similarity=0.361  Sum_probs=50.3

Q ss_pred             CCccccccCCcCccccCHHHHHHhhhc-cCCCC-CccCCCC----CCCCcccCChHHHHHHHHHhcCCCCceeccCcCcc
Q psy11069        295 TKNFKCTHDGCKLLFSSKSALKRHNKS-KHLNM-RMFPCPL----VTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCL  368 (391)
Q Consensus       295 ~~~~~C~~~~C~~~f~~~~~l~~H~~~-~H~~~-~~~~C~~----~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~  368 (391)
                      .+++.|..  |+..|.+...+..|... .|... +.|.+..    ..=++.|....    +...+.+.. .|.|.+  |+
T Consensus        30 ~~~~~C~~--C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~C~~--C~  100 (127)
T 1zu1_A           30 FSDTQCKV--CSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDR-SKCCPV--CN  100 (127)
T ss_dssp             BCSSEETT--TTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCT-TTEETT--TT
T ss_pred             CCCCcCcC--CCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCC-CeEcCC--CC
Confidence            46789988  99999999999999831 24321 2333210    00022232211    112234445 589999  99


Q ss_pred             cccccchhHHHHHHh
Q psy11069        369 MSYVAKSSLYAHLKH  383 (391)
Q Consensus       369 ~~f~~~~~L~~H~~~  383 (391)
                      +.|.+...|..|+..
T Consensus       101 ~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A          101 MTFSSPVVAESHYIG  115 (127)
T ss_dssp             EECSSHHHHHHHHTS
T ss_pred             CEeCCHHHHHHHHCC
Confidence            999999999999753

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.15  E-value=0.0042  Score=46.47  Aligned_cols=29  Identities=21%  Similarity=0.445  Sum_probs=22.1

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHH
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQ  352 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  352 (391)
                      .|+|+++|.|..  |++.|.+...|..|+++
T Consensus        44 d~tGekpfyC~~--C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLA--CARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETT--TTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEccc--CcchhCCHHHHHHHHhh
Confidence            477777888876  88888888888888764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.05  E-value=0.015  Score=34.67  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=18.2

Q ss_pred             CccccCcccccCCChhHHHHHHH
Q psy11069        267 EDLVCKGCGKQFKVPCRLREHYK  289 (391)
Q Consensus       267 ~~~~C~~C~~~f~~~~~l~~H~~  289 (391)
                      .+|.|+.|+..|.....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            46778888888888888888876

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.67  E-value=0.0077  Score=45.06  Aligned_cols=31  Identities=13%  Similarity=0.295  Sum_probs=27.0

Q ss_pred             HHhcCCCCceeccCcCcccccccchhHHHHHHhh
Q psy11069        351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       351 ~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      ..|+|++ +|.|..  |++.|.+...|..|++..
T Consensus        43 ed~tGek-pfyC~~--C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGG-LHRCLA--CARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGG-CSEETT--TTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCc-ceEccc--CcchhCCHHHHHHHHhhh
Confidence            3477888 599999  999999999999998765

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.90  E-value=0.042  Score=30.61  Aligned_cols=28  Identities=32%  Similarity=0.660  Sum_probs=22.9

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCC
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHEST  295 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~  295 (391)
                      .|.|++|.+.|.+...|..|....|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            4888999988999999998888777643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.15  E-value=0.07  Score=29.72  Aligned_cols=27  Identities=33%  Similarity=0.778  Sum_probs=19.3

Q ss_pred             eeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      |.||.  |.+.|.+...|..|....|...
T Consensus         6 FiCP~--C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            6 FICPQ--CMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EECTT--TCCEESSHHHHHHHHHHHTSSS
T ss_pred             cCCcH--HHHHcCCHHHHHHHHHhccccC
Confidence            77777  7777777777777777776553

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.97  E-value=0.31  Score=29.06  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=14.6

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHH
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHML  351 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~  351 (391)
                      ..|.|+-  |+..|.....|+.||+
T Consensus        11 ~~~~CPr--Cn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPR--CNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTT--TCCCCSSHHHHHHHHH
T ss_pred             CceeCCc--ccccccchHHHHhhhh
Confidence            4466665  6666666666666665

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=84.09  E-value=0.58  Score=25.07  Aligned_cols=25  Identities=24%  Similarity=0.642  Sum_probs=19.8

Q ss_pred             eeccCcCcccccccchhHHHHHHhhcC
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      -.|..  |.+.|....+|.+|++.-|.
T Consensus        10 qhcrf--ckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRF--CKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETT--TTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence            45888  88888888888888887764

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=82.84  E-value=0.85  Score=24.44  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             cccCcccccCCChhHHHHHHHHhcC
Q psy11069        269 LVCKGCGKQFKVPCRLREHYKAVHE  293 (391)
Q Consensus       269 ~~C~~C~~~f~~~~~l~~H~~~~H~  293 (391)
                      --|..|.+.|..-.+|..|++..|.
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3488899999999999999887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	391
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	1e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	3e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	0.003
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	4e-05
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	1e-04
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	0.003
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	0.003
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	1e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.002
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	1e-04
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	7e-04
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	2e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.002
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.002
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.004

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
           P+MC +  CGK F     L+ H+R H
Sbjct: 2   PFMCTWSYCGKRFTRSDELQRHKRTH 27

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
           P+ C ++GC KS+  + +LK+H R H
Sbjct: 2   PHKCTFEGCRKSYSRLENLKTHLRSH 27

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.003
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
           K + C  + C K ++ L NLK H+  H
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSH 27

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (89), Expect = 4e-05
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
           PY C  + C + F   A L  H R+H
Sbjct: 2   PYACPVESCDRRFSRSADLTRHIRIH 27

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
           PY+C + GC K F    +LKSH   H
Sbjct: 2   PYVCPFDGCNKKFAQSTNLKSHILTH 27

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.003
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
           + Y C    CNK+F   +NLK H++ H
Sbjct: 1   RPYVCPFDGCNKKFAQSTNLKSHILTH 27

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
           R + CP   C K F +S +L+ H+L H
Sbjct: 1   RPYVCPFDGCNKKFAQSTNLKSHILTH 27

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
           PY CD+ GC K+F     L  H++ H
Sbjct: 3   PYSCDHPGCDKAFVRNHDLIRHKKSH 28

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHGK 203
           + Y CD   C+K F    +L  H   H +
Sbjct: 2   RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY 364
           F CP   CGKSF   +HL+EHM  H++ +  + C +
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF 36

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 238 YMCDYKGCGKSFYLMASLKSHQRVH 262
           + C    CGKSF     LK H ++H
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLH 26

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
           P+ C ++GCGK F L  +L++H R+H
Sbjct: 2   PFQCTFEGCGKRFSLDFNLRTHVRIH 27

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 289
            Y C    CGKSF   +    H  +H+       C  CGK+FK+   L  H K
Sbjct: 3   LYPCQ---CGKSFTHKSQRDRHMSMHLGLRPY-GCGVCGKKFKMKHHLVGHMK 51

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
           K YPC    C K FT  S    HM  H       C    CG+KF+       H+K H
Sbjct: 2   KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 220 TMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
           ++ +Y   + +       + C + GC K+F    +++SH + H
Sbjct: 6   SIDKYVKEMPDK-----TFECLFPGCTKTFKRRYNIRSHIQTH 43

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
           PY C    CGK+F   + L  HQRVH
Sbjct: 7   PYGCVE--CGKAFSRSSILVQHQRVH 30

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.2 bits (74), Expect = 0.004
 Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
           P+ C    C ++F     L +H R H
Sbjct: 3   PFQCRI--CMRNFSRSDHLTTHIRTH 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.54
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.48
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.08
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.08
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.02
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.01
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.01
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.01
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.99
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.98
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.97
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.96
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.96
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.95
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.95
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.94
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.93
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.93
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.92
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.9
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.89
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.84
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.82
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.8
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.78
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.77
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.75
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.75
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.72
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.71
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.64
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.62
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.57
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.55
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.51
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.44
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.33
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.25
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.21
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.98
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.97
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.94
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.86
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.84
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.74
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.72
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.59
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.56
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.51
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.5
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.48
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.45
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.42
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.4
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.3
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.28
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.25
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.25
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.22
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.16
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.09
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.08
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.04
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.03
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.0
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.0
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.91
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.89
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.84
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.77
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.74
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.73
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.69
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.68
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.55
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.52
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.42
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.29
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.22
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.15
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.12
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.07
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.05
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.49
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.49
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.41
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.15
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.1
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.92
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.89
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.83
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.74
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.47
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.38
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.01
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	93.7
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.36
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.02
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.34
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.6
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.23
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.17
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	89.14
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	88.93
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	86.11
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	84.75
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	82.64
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	81.55
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	81.54

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.3e-15  Score=95.74  Aligned_cols=53  Identities=32%  Similarity=0.685  Sum_probs=42.5

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhh
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      ++||.|.   ||+.|.....|..|+++|++++| |.|+.  ||++|.+.+.|..|+++|
T Consensus         1 EK~y~C~---Cgk~F~~~~~l~~H~~~Ht~ekp-y~C~~--C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRP-YGCGV--CGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT---TSCEESSHHHHHHHHHHHSCCCS-EECTT--TSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC---CCCeECCHHHhHHHhhccccccC-CcCCC--cCCEecCHHHHHHHHhcC
Confidence            5778884   88888888888888888888884 88877  888888888888888765

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.7e-15  Score=93.01  Aligned_cols=52  Identities=40%  Similarity=0.759  Sum_probs=25.2

Q ss_pred             CccccccCCcCccccCHHHHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHh
Q psy11069        296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       296 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h  353 (391)
                      +||+| .  ||+.|.....|..|++ .|++++||.|..  ||++|.+...|..|+++|
T Consensus         2 K~y~C-~--Cgk~F~~~~~l~~H~~-~Ht~ekpy~C~~--C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPC-Q--CGKSFTHKSQRDRHMS-MHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEEC-T--TSCEESSHHHHHHHHH-HHSCCCSEECTT--TSCEESSSHHHHHHHTTT
T ss_pred             cCCCC-C--CCCeECCHHHhHHHhh-ccccccCCcCCC--cCCEecCHHHHHHHHhcC
Confidence            44444 2  5555555555555544 344445555544  555555555555554443

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.8e-12  Score=72.44  Aligned_cols=34  Identities=41%  Similarity=0.852  Sum_probs=16.8

Q ss_pred             CccccCcccccCCChhHHHHHHHHhcCCCCcccc
Q psy11069        267 EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  300 (391)
Q Consensus       267 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  300 (391)
                      +||+|.+||+.|.....|.+|++.+|++++||+|
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCccCCCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            4455555555555555555554434555555544

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.5e-11  Score=70.72  Aligned_cols=35  Identities=34%  Similarity=0.827  Sum_probs=18.1

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHH-HhcCCCCceecc
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHML-QHNENKPKFTCP  363 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~~~~C~  363 (391)
                      ++||+|..  ||+.|.+.+.|.+|++ +|++++| |+|.
T Consensus         3 ~Kpy~C~~--Cgk~F~~~~~L~~H~r~~Ht~ekp-y~C~   38 (39)
T d2epsa1           3 GKPYICQS--CGKGFSRPDHLNGHIKQVHTSERP-HKCQ   38 (39)
T ss_dssp             SCCEECSS--SCCEESSHHHHHHHHHHTSCCCCC-CCSS
T ss_pred             CCCccCCC--CCCCcCChHHhhccCcCccCCCcC-cCCc
Confidence            34555554  5555555555555543 3555552 5553

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.7e-11  Score=69.83  Aligned_cols=37  Identities=32%  Similarity=0.568  Sum_probs=25.9

Q ss_pred             HhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        317 RHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       317 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +|++ .|++++||.|+.  ||++|...+.|..|+++|+||
T Consensus         2 rH~~-~Ht~ekpy~C~~--CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEW-QQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCS-CCCCSCSSBCSS--SCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCc-ccCCCCCEecCC--CCceeeCHHHHHHhCccCCCC
Confidence            4566 477777777775  777777777777777777764

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.5e-11  Score=66.29  Aligned_cols=32  Identities=34%  Similarity=0.597  Sum_probs=18.9

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |++++||+|..  ||++|.+.+.|..|+++|+||
T Consensus         2 HTgekpy~C~~--Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVE--CGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSS--SCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCC--CCCEeCchHHhHhhccccCCC
Confidence            55566666654  666666666666666666553

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.4e-11  Score=66.77  Aligned_cols=34  Identities=44%  Similarity=0.954  Sum_probs=27.6

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHHhcCCCCceecc
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP  363 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~  363 (391)
                      |.|++++|++.|.+...|.+|+++|++++| |.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp-y~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC-EeCC
Confidence            677777788888888888888888888884 8885

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.9e-11  Score=67.03  Aligned_cols=32  Identities=22%  Similarity=0.542  Sum_probs=16.9

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |++++||+|..  ||++|.+.+.|..|+++|+++
T Consensus         3 HTgekPy~C~~--C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           3 HTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CCCCCCEECSS--SSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCEECCC--CCCCcCCHhHHHHhCcccCCC
Confidence            55555555554  555555555555555555443

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.2e-11  Score=67.38  Aligned_cols=34  Identities=21%  Similarity=0.564  Sum_probs=21.2

Q ss_pred             HHhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       351 ~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      |+|+|++| |+|+.  |++.|.++++|.+|++++|++
T Consensus         1 R~HTgekP-~~C~~--C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKP-YECYI--CHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCS-EECTT--TCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCC-EeCCC--CcccccchHHHHHHcccccCC
Confidence            35666663 66666  666666666666666666654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.7e-11  Score=70.67  Aligned_cols=37  Identities=22%  Similarity=0.367  Sum_probs=34.6

Q ss_pred             HHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        348 EHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       348 ~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      +|+++|++++| |.|+.  ||++|...++|..|+++|+|+
T Consensus         2 rH~~~Ht~ekp-y~C~~--CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRR-YKCDE--CGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCS-SBCSS--SCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCC-EecCC--CCceeeCHHHHHHhCccCCCC
Confidence            58899999995 99998  999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.3e-10  Score=63.04  Aligned_cols=31  Identities=45%  Similarity=0.763  Sum_probs=20.4

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      +||.|++++|+++|.+.+.|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            4666666666666666666666666666654

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=5.1e-11  Score=71.85  Aligned_cols=42  Identities=24%  Similarity=0.540  Sum_probs=28.7

Q ss_pred             HHHHhhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        314 ALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       314 ~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      .|..|+.  |.+++||.|.+++|++.|...+.|..|+++|+|++
T Consensus         6 ~l~~h~~--h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK--EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE--EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh--ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            3455553  67777777766667777777777777777777764

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.6e-10  Score=64.51  Aligned_cols=32  Identities=22%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             CCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       323 H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |+|++||+|.+  |++.|.+...|.+|+++|++.
T Consensus         2 ~TGekPy~C~~--C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSS--SCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCC--CCCcccChHHHHHHccccCCc
Confidence            55666666665  666666666666666666543

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.6e-10  Score=61.08  Aligned_cols=30  Identities=30%  Similarity=0.615  Sum_probs=20.8

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +||.|++++|+++|.+.+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            467777666777777777777777777664

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.96  E-value=2.2e-10  Score=61.15  Aligned_cols=29  Identities=41%  Similarity=0.884  Sum_probs=20.0

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      +||.|++  |+++|...+.|.+|+++|+|++
T Consensus         1 kp~~C~~--C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTT--TCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCC--CCCCCCCchHcccccCcccCCC
Confidence            4677776  7777777777777777777664

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.2e-10  Score=62.98  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.8

Q ss_pred             HhcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        352 QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       352 ~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      +|++++| |+|..  ||++|.+++.|..|+++|.++
T Consensus         1 IHTgekp-y~C~~--Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKP-YGCVE--CGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCC-EECSS--SCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCC-eeCCC--CCCEeCchHHhHhhccccCCC
Confidence            5899995 99998  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.9e-10  Score=61.82  Aligned_cols=30  Identities=30%  Similarity=0.624  Sum_probs=18.2

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +||.|++++|+++|.+.+.|.+|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            456666555666666666666666666554

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.5e-10  Score=64.33  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=32.5

Q ss_pred             ceecCCCCCCCcccChHHHHHHHHhcCCCCcccCc
Q psy11069        110 LWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCK  144 (391)
Q Consensus       110 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  144 (391)
                      .|.|++.+|++.|...+.|++|+++|++++||.|+
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CeECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            38899888999999999999999999999999996

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3e-10  Score=64.29  Aligned_cols=35  Identities=31%  Similarity=0.610  Sum_probs=26.1

Q ss_pred             HHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       351 ~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      |+|+|++| |+|..  |+++|..++.|..|+++||+++
T Consensus         1 R~HTgekP-y~C~~--C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKP-YACSH--CDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCC-EECSS--SSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCC-EECCC--CCCCcCCHhHHHHhCcccCCCC
Confidence            46777774 88877  8888888888888887777653

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=3.5e-10  Score=64.51  Aligned_cols=34  Identities=35%  Similarity=0.696  Sum_probs=20.4

Q ss_pred             hhhccCCCCCccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        318 HNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       318 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      |.+ .|++++||+|..  |+++|.+.+.|.+|+++|.
T Consensus         2 h~R-~HTgeKPy~C~~--C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STR-GSTGIKPFQCPD--CDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSS-TTCCSSSBCCTT--TCCCBSSHHHHHHHHGGGT
T ss_pred             CCC-ccCCccCeEeCC--CCCEecCHHHHHHHHhcCc
Confidence            344 366666666665  6666666666666666654

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=9.9e-11  Score=66.88  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=32.1

Q ss_pred             HHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        349 HMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       349 H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      |.|+|++++| |+|+.  |+++|.++++|.+|+++|-+
T Consensus         2 h~R~HTgeKP-y~C~~--C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKP-FQCPD--CDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSS-BCCTT--TCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccC-eEeCC--CCCEecCHHHHHHHHhcCcC
Confidence            6789999995 99999  99999999999999998854

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.3e-10  Score=59.50  Aligned_cols=29  Identities=45%  Similarity=0.994  Sum_probs=19.5

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENK  357 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  357 (391)
                      +||.|++  |+++|.+.+.|.+|+++|++++
T Consensus         1 Kpy~C~~--C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPE--CPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTT--TTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCc--CCCeecchHHhhhhcCccCCcC
Confidence            4666765  7777777777777777776654

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=3.4e-10  Score=59.61  Aligned_cols=28  Identities=36%  Similarity=0.803  Sum_probs=16.2

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      |+||+|+.  |+++|.+++.|.+|+++|+|
T Consensus         1 EKPy~C~~--C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRI--CMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTT--TCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCC--CcCEecccccccccCCCccC
Confidence            35556654  66666666666666665554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.2e-10  Score=70.11  Aligned_cols=43  Identities=12%  Similarity=0.381  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhcCCCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        344 EHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       344 ~~L~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +.|.+|+. |++++ +|+|++++|+++|..+++|..|+++|++++
T Consensus         5 ~~l~~h~~-h~gek-py~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDK-TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTT-EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCC-CeECCcCCCCccccCchHHHhhcccccCCC
Confidence            45667775 99999 599988789999999999999999999974

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-09  Score=61.51  Aligned_cols=33  Identities=24%  Similarity=0.570  Sum_probs=22.7

Q ss_pred             cCCCCCccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       322 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      .|+|++||+|++  |++.|.+.+.|.+|++.++++
T Consensus         2 ~HTgekP~~C~~--C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYI--CHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTT--TCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCC--CcccccchHHHHHHcccccCC
Confidence            477777777776  777777777777776655443

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=1.3e-09  Score=60.67  Aligned_cols=32  Identities=31%  Similarity=0.642  Sum_probs=29.2

Q ss_pred             hcCCCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        353 HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       353 h~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      |+|++| |+|.+  |++.|.++++|.+|+++|...
T Consensus         2 ~TGekP-y~C~~--C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRP-FVCRI--CLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSC-EECSS--SCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCcc-ccCCC--CCCcccChHHHHHHccccCCc
Confidence            689995 99999  999999999999999998754

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=1e-09  Score=58.15  Aligned_cols=29  Identities=34%  Similarity=0.793  Sum_probs=15.7

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      +||.|.+++|+++|.+.+.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            35555555555555555555555555543

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=2.6e-09  Score=58.02  Aligned_cols=30  Identities=33%  Similarity=0.638  Sum_probs=19.1

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      ++||.|.+++|+++|++.+.|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            456666666666666666666666666654

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.75  E-value=2.7e-09  Score=56.85  Aligned_cols=27  Identities=30%  Similarity=0.735  Sum_probs=13.8

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCC
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHEST  295 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~  295 (391)
                      ||.|++|++.|...+.|.+|++ +|+|+
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r-~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR-SHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH-TTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccC-cccCC
Confidence            4555555555555555555544 45544

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-09  Score=57.54  Aligned_cols=29  Identities=17%  Similarity=0.473  Sum_probs=27.5

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      ||.|++.+|+++|++.+.|.+|+|+|+|+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCCC
Confidence            59999999999999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2e-09  Score=56.30  Aligned_cols=28  Identities=39%  Similarity=0.861  Sum_probs=17.0

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      +||.|++++|+++|.+.+.|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            3566666666666666666666666653

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3e-09  Score=56.85  Aligned_cols=29  Identities=24%  Similarity=0.532  Sum_probs=27.6

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      ||+|++.+|+++|.+.+.|.+|+++|+|+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            59999999999999999999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=2.9e-09  Score=55.95  Aligned_cols=28  Identities=21%  Similarity=0.591  Sum_probs=25.9

Q ss_pred             CCCceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        356 NKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       356 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      |+ ||+|+.  |+++|.+++.|.+|+++|+|
T Consensus         1 EK-Py~C~~--C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QK-PFQCRI--CMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CC-CEECTT--TCCEESCHHHHHHHHHHHHC
T ss_pred             Cc-CccCCC--CcCEecccccccccCCCccC
Confidence            56 599999  99999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.1e-08  Score=55.33  Aligned_cols=29  Identities=14%  Similarity=0.245  Sum_probs=18.2

Q ss_pred             ceecCCCCCCCcccChHHHHHHHHhcCCC
Q psy11069        110 LWSCPIVNCNFTSVNLNTFKIHLLKHFDK  138 (391)
Q Consensus       110 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~  138 (391)
                      ||.|++..|++.|...+.|.+|+++|+|+
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            56666556666666666666666666655

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.1e-08  Score=54.30  Aligned_cols=28  Identities=29%  Similarity=0.663  Sum_probs=26.4

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      ||.|+.  |+++|.+++.|.+|+++|++++
T Consensus         2 py~C~~--C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           2 KFACPE--CPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CSCCTT--TTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CEECCc--CCCeecchHHhhhhcCccCCcC
Confidence            599999  9999999999999999999874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=1e-08  Score=54.22  Aligned_cols=28  Identities=18%  Similarity=0.536  Sum_probs=26.5

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      ||.|++++|+++|++.+.|.+|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5999999999999999999999999976

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.2e-08  Score=52.10  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=10.6

Q ss_pred             eeccCcCcccccccchhHHHHHHhh
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      |+|..  ||++|..++.|.+|+|+|
T Consensus         3 y~C~e--CgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           3 YKCLE--CGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             EECSS--SCCEESSHHHHHHHHHHH
T ss_pred             ccCCC--CcCeeccCcccccCccCC
Confidence            44444  444444444444444444

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=2.5e-08  Score=54.09  Aligned_cols=31  Identities=19%  Similarity=0.481  Sum_probs=28.3

Q ss_pred             CCCceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        356 NKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       356 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      ++ ||.|++.+|+++|++.++|.+|+++|.+.
T Consensus         1 Er-P~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DR-PYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CC-SBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             Cc-CeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            46 59999999999999999999999999864

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.9e-08  Score=52.53  Aligned_cols=27  Identities=19%  Similarity=0.630  Sum_probs=25.6

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhc
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      ||.|+..+|+++|++.++|.+|+++|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            599999999999999999999999985

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.1e-08  Score=50.04  Aligned_cols=26  Identities=31%  Similarity=0.643  Sum_probs=24.6

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      +||+|..  ||++|...+.|.+|+|+|+
T Consensus         1 KPy~C~e--CgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLE--CGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSS--SCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCC--CcCeeccCcccccCccCCC
Confidence            6999996  9999999999999999995

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.6e-07  Score=47.61  Aligned_cols=28  Identities=36%  Similarity=0.685  Sum_probs=20.1

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      ||.|.+.+|+++|+..++|++|++.+||
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4777777777777777777777777765

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3e-07  Score=46.60  Aligned_cols=29  Identities=21%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      +||.|.+.+|++++.+.++|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            46777777777777777777777776654

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.4e-07  Score=44.05  Aligned_cols=24  Identities=42%  Similarity=0.890  Sum_probs=12.9

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      .+|++  |++.|+.+..|+.|||.|+
T Consensus         2 hkc~~--c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           2 HKCEV--CGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCBTT--TTBCCCCHHHHHHHGGGCC
T ss_pred             Cccch--hhhHhcchhHHHHHhhccC
Confidence            44554  5555555555555555554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=1.8e-06  Score=42.99  Aligned_cols=26  Identities=35%  Similarity=0.807  Sum_probs=17.3

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHh
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h  353 (391)
                      ++||.|.+  ||+.|..+...++|.++|
T Consensus         1 EkPf~C~~--CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDI--CGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTT--TCCEESSHHHHHHHHGGG
T ss_pred             CCCcccch--hhhhhhcchhhhhhhhhc
Confidence            45666666  666666666666666666

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.6e-06  Score=42.73  Aligned_cols=27  Identities=30%  Similarity=0.559  Sum_probs=14.7

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      +||+|.+  |.+.-.+.+.|..|+|.|+|
T Consensus         2 rpfkcql--csy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQI--CPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSS--SSCEESSHHHHHHHHTTCCS
T ss_pred             Ccceeee--cccccCCchheEEeeecccC
Confidence            4555555  55555555555555555554

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.9e-07  Score=45.06  Aligned_cols=29  Identities=21%  Similarity=0.479  Sum_probs=17.2

Q ss_pred             CccCCCCCCCCcccCChHHHHHHH-HHhcC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHM-LQHNE  355 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~-~~h~~  355 (391)
                      +||.|.+++|.|.|++.++..+|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            356666666666666666666665 55543

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.94  E-value=2.5e-06  Score=42.23  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=17.8

Q ss_pred             ceeccCcCcccccccchhHHHHHHhh
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      ||+|+.++|+++|...+.|.+|.+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            47777777777777777777776654

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.5e-06  Score=42.55  Aligned_cols=27  Identities=30%  Similarity=0.849  Sum_probs=14.9

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      +||.|++  |+..|..+..+.-|+|.|.|
T Consensus         2 kp~~cpi--c~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPV--CGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETT--TTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccch--HHHHhhccccceEeeecccC
Confidence            4555555  55555555555555555544

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.2e-06  Score=43.75  Aligned_cols=30  Identities=30%  Similarity=0.610  Sum_probs=20.5

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcCCCCcc
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHESTKNF  298 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~  298 (391)
                      ...|..||+.|+....|.+|.. .|++++||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhkl-shs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKL-SHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGG-GSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhc-ccCCCCCC
Confidence            3557777777777777777744 67777766

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.7e-06  Score=40.38  Aligned_cols=26  Identities=19%  Similarity=0.427  Sum_probs=24.0

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      |.+|+.  |++.|..+..|..|+|.|+|
T Consensus         1 phkc~~--c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEV--CGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTT--TTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccch--hhhHhcchhHHHHHhhccCC
Confidence            378999  99999999999999999975

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.84  E-value=6e-06  Score=40.82  Aligned_cols=26  Identities=31%  Similarity=0.606  Sum_probs=15.5

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHh
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h  353 (391)
                      ||+|+..+|++.|...+.|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            55565555666666666666665554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.2e-05  Score=40.12  Aligned_cols=29  Identities=34%  Similarity=0.694  Sum_probs=23.7

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCCCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK  389 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  389 (391)
                      ||+|.+  |.++....++|..|+++.|+.++
T Consensus         2 py~cqy--c~yrsadssnlkthiktkhskek   30 (30)
T d1klra_           2 TYQCQY--CEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCSS--SSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             Cccccc--cccccccchhhhhhhhcccccCC
Confidence            488888  88888888888888888887654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.74  E-value=8.5e-06  Score=40.47  Aligned_cols=28  Identities=39%  Similarity=0.715  Sum_probs=15.9

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      ||.|...+|.+.|.+.-.|.+|..+|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            4555555555555555555555555554

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.5e-05  Score=39.24  Aligned_cols=27  Identities=30%  Similarity=0.671  Sum_probs=19.2

Q ss_pred             CceecCCCCCCCcccChHHHHHHHHhcCC
Q psy11069        109 QLWSCPIVNCNFTSVNLNTFKIHLLKHFD  137 (391)
Q Consensus       109 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  137 (391)
                      +||+|.+  |.+...+.+.|..|++.|+|
T Consensus         2 rpfkcql--csy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQI--CPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSS--SSCEESSHHHHHHHHTTCCS
T ss_pred             Ccceeee--cccccCCchheEEeeecccC
Confidence            5677776  77777777777777777765

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.2e-05  Score=40.55  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=22.2

Q ss_pred             CceecCCCCCCCcccChHHHHHHHHhcCCCCcc
Q psy11069        109 QLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPF  141 (391)
Q Consensus       109 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~  141 (391)
                      +...|++  |++.|.+...|.+|..+|++++||
T Consensus         4 k~~~ce~--cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEI--CGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETT--TTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHH--HHHHHHHHHHHHhhhcccCCCCCC
Confidence            4456775  777777777777777777777776

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=2.3e-05  Score=38.96  Aligned_cols=27  Identities=33%  Similarity=0.630  Sum_probs=18.1

Q ss_pred             CCcccCccCCCCCCccccccCCHHHHHHHHhhcC
Q psy11069        138 KKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHD  171 (391)
Q Consensus       138 ~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~  171 (391)
                      ++||.|.+       ||+.|.......+|.++|.
T Consensus         1 EkPf~C~~-------CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDI-------CGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTT-------TCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccch-------hhhhhhcchhhhhhhhhcc
Confidence            45677776       7777777777777766663

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.4e-05  Score=39.41  Aligned_cols=30  Identities=20%  Similarity=0.569  Sum_probs=26.8

Q ss_pred             CCCceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        356 NKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       356 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      ++ ||.|++  |+.+|..+.-+.-|+|.|-|.-
T Consensus         1 ek-p~~cpi--c~qrfkrkdrmsyhvrshdg~v   30 (32)
T d2epqa1           1 EK-PYSCPV--CGLRFKRKDRMSYHVRSHDGSV   30 (32)
T ss_dssp             CC-SSEETT--TTEECSCHHHHHHHHHHHSCCC
T ss_pred             CC-Ccccch--HHHHhhccccceEeeecccCcc
Confidence            46 599999  9999999999999999998753

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.7e-05  Score=42.14  Aligned_cols=28  Identities=32%  Similarity=0.666  Sum_probs=14.5

Q ss_pred             CCccCCCCCCCCcccCChHHHHHHHHHh
Q psy11069        326 MRMFPCPLVTCGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       326 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h  353 (391)
                      ++||.|..++|+.+|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            4455555555555555555555555444

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=5.2e-05  Score=37.56  Aligned_cols=26  Identities=23%  Similarity=0.566  Sum_probs=15.6

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      |.|+.  ||......+-|+.|+|+|+++
T Consensus         2 YvC~~--Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEE--CGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTT--TCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccc--cCcccCCHHHHHHHHHHhcCC
Confidence            55554  666666666666666666554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3.3e-05  Score=37.66  Aligned_cols=26  Identities=23%  Similarity=0.525  Sum_probs=15.9

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      +||+|..  |++.-.+.++|..|+|+|.
T Consensus         2 kp~kck~--cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKT--CDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSS--SCCEESSHHHHHHHHHHSC
T ss_pred             CCccccc--ccchhcchhhHhhhhhccc
Confidence            4566665  6666666666666666654

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.4e-05  Score=37.77  Aligned_cols=25  Identities=40%  Similarity=0.780  Sum_probs=15.4

Q ss_pred             cccCcccccCCChhHHHHHHHHhcCC
Q psy11069        269 LVCKGCGKQFKVPCRLREHYKAVHES  294 (391)
Q Consensus       269 ~~C~~C~~~f~~~~~l~~H~~~~H~~  294 (391)
                      ..|..||+.|...+.|++|.. +|++
T Consensus         3 hvc~ecgkaf~essklkrh~l-vhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQL-VHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGG-GTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhh-cccC
Confidence            356666666666666666654 5655

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=6.4e-05  Score=37.21  Aligned_cols=27  Identities=30%  Similarity=0.774  Sum_probs=20.1

Q ss_pred             cccCcccccCCChhHHHHHHHHhcCCCC
Q psy11069        269 LVCKGCGKQFKVPCRLREHYKAVHESTK  296 (391)
Q Consensus       269 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~  296 (391)
                      |.|+.||.....++.|..|++ .|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIR-sHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIR-THTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH-HTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHH-HhcCCC
Confidence            677777777777777777777 777653

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4.2e-05  Score=38.05  Aligned_cols=23  Identities=22%  Similarity=0.492  Sum_probs=10.8

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHH
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQ  352 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~  352 (391)
                      ||+|.+  |.+...+.+.|+.|+++
T Consensus         2 py~cqy--c~yrsadssnlkthikt   24 (30)
T d1klra_           2 TYQCQY--CEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSS--SSCCCSCSHHHHHHHHH
T ss_pred             Cccccc--cccccccchhhhhhhhc
Confidence            444444  44444444444444443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=8.5e-05  Score=35.74  Aligned_cols=25  Identities=36%  Similarity=0.667  Sum_probs=15.1

Q ss_pred             CCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        330 PCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       330 ~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +|+.  |.+.|.++..|+.|-|.|+|+
T Consensus         2 qcp~--c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPT--CHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTT--TCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcc--hHHHHHHhHhhhhccccccCC
Confidence            4554  666666666666666666655

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=8.6e-05  Score=36.74  Aligned_cols=24  Identities=33%  Similarity=0.778  Sum_probs=15.3

Q ss_pred             eeccCcCcccccccchhHHHHHHhhc
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      |.|..  |.+.|.++.+|.+||+...
T Consensus         2 y~C~~--CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           2 YHCTY--CNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             EECSS--SSCEESSHHHHHHHHHSSS
T ss_pred             cccce--eeeeEeeccchhHhhhhhh
Confidence            66666  6666666666666666543

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=6.6e-05  Score=36.72  Aligned_cols=20  Identities=45%  Similarity=0.894  Sum_probs=9.9

Q ss_pred             CCcccCChHHHHHHHHHhcC
Q psy11069        336 CGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h~~  355 (391)
                      ||+.|...+.|++|...|++
T Consensus         8 cgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           8 CGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             TCCEESSHHHHHHHGGGTSC
T ss_pred             HhHHHHHHHHHHHHhhcccC
Confidence            55555555555555444444

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.25  E-value=9.9e-05  Score=34.89  Aligned_cols=18  Identities=33%  Similarity=0.671  Sum_probs=7.5

Q ss_pred             CCcccCChHHHHHHHHHh
Q psy11069        336 CGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h  353 (391)
                      |.++|..++.|.+|++.|
T Consensus         6 cersfveksalsrhqrvh   23 (26)
T d1znfa_           6 CERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             SCCBCSSHHHHHHHGGGT
T ss_pred             hHHHHHHHHHHHHHHHhh
Confidence            444444444444444433

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00018  Score=35.48  Aligned_cols=29  Identities=21%  Similarity=0.591  Sum_probs=21.3

Q ss_pred             CCceecCCCCCCCcccChHHHHHHHHhcCCC
Q psy11069        108 QQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK  138 (391)
Q Consensus       108 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~  138 (391)
                      ++.|.|.+  |...|+..-.|+.||.+|+|+
T Consensus         2 eqvftcs~--cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSV--CQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSS--SCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHH--HHHHHHHHHhheeeeecccCC
Confidence            45677776  777777777777777777764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.0001  Score=35.49  Aligned_cols=26  Identities=23%  Similarity=0.512  Sum_probs=24.3

Q ss_pred             eccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        361 TCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       361 ~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      +|+.  |.+.|.++..|..|-|.|+|++
T Consensus         2 qcp~--c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPT--CHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTT--TCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcc--hHHHHHHhHhhhhccccccCCC
Confidence            6999  9999999999999999999874

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.16  E-value=0.00012  Score=37.22  Aligned_cols=28  Identities=25%  Similarity=0.615  Sum_probs=21.4

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHSTN  388 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  388 (391)
                      ||.|.+  |++.|+.+..|.+|.+.-|+++
T Consensus         1 Pf~C~~--C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGL--CNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTT--TCCEESSHHHHHHHHTTTSCCS
T ss_pred             Cccccc--ccchhhHHHHHHHHHHHHhcCc
Confidence            477877  8888888888888887777653

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.09  E-value=0.00015  Score=36.56  Aligned_cols=30  Identities=23%  Similarity=0.665  Sum_probs=22.1

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +.|.|.+++|+..|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            347777777777777777777777777764

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.08  E-value=0.00021  Score=35.37  Aligned_cols=29  Identities=17%  Similarity=0.334  Sum_probs=27.1

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      ||.|..++|.+.|.+...|.+|.-+|+|+
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccccccchhhhhhhhhhccccCC
Confidence            59999999999999999999999999875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.04  E-value=0.00016  Score=34.17  Aligned_cols=24  Identities=33%  Similarity=0.618  Sum_probs=22.0

Q ss_pred             eeccCcCcccccccchhHHHHHHhhc
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      |+|..  |.++|..++.|.+|++.|-
T Consensus         1 ykcgl--cersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGL--CERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSS--SCCBCSSHHHHHHHGGGTC
T ss_pred             Ccccc--hHHHHHHHHHHHHHHHhhc
Confidence            78999  9999999999999998874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00019  Score=35.58  Aligned_cols=27  Identities=33%  Similarity=0.690  Sum_probs=22.7

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      ||+|..  |.+-..+.++|..|++..|++
T Consensus         2 PFkC~~--CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           2 PFKCNY--CSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             SEECSS--SSCEESSHHHHHHHHHHHHSS
T ss_pred             Ccccce--ecccccCcchHHHHHHHHccC
Confidence            588888  888888888888888888876

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00023  Score=36.17  Aligned_cols=28  Identities=21%  Similarity=0.464  Sum_probs=24.2

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      ||.|.+.+|.|.|.+.+.-.+|+.+-|.
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccccCCChhhhhcchhhhhhhcccccc
Confidence            5999999999999999999999844443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0004  Score=37.51  Aligned_cols=29  Identities=21%  Similarity=0.422  Sum_probs=21.7

Q ss_pred             CCCceecCCCCCCCcccChHHHHHHHHhc
Q psy11069        107 KQQLWSCPIVNCNFTSVNLNTFKIHLLKH  135 (391)
Q Consensus       107 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h  135 (391)
                      +++||.|.+..|+..|.+...|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            36777787777777777777777777666

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00034  Score=36.97  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=14.6

Q ss_pred             cCCCCCCCCc---ccCChHHHHHHHHHhcCC
Q psy11069        329 FPCPLVTCGK---SFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       329 ~~C~~~~C~~---~f~~~~~L~~H~~~h~~~  356 (391)
                      |.|.+.+|.+   .|.....|..|||+|+||
T Consensus         3 y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           3 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             eEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            4455545532   355555555555555553

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00041  Score=34.17  Aligned_cols=26  Identities=35%  Similarity=0.820  Sum_probs=14.1

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHHhcC
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQHNE  355 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~  355 (391)
                      .|.|.+  |...|.....|..||-.|+|
T Consensus         4 vftcs~--cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSV--CQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSS--SCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHH--HHHHHHHHHhheeeeecccC
Confidence            355555  55555555555555555554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00035  Score=38.21  Aligned_cols=26  Identities=19%  Similarity=0.497  Sum_probs=19.5

Q ss_pred             cCCCCceeccCcCcccccccchhHHHHHH
Q psy11069        354 NENKPKFTCPYQDCLMSYVAKSSLYAHLK  382 (391)
Q Consensus       354 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~  382 (391)
                      +|.+ ||.|..  |++.|..+.++.+|..
T Consensus         1 TGiK-PYeC~~--C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIK-PYECNI--CAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCC-CEECSS--SCCEESCHHHHHHHHH
T ss_pred             CCCC-ceeccc--hhhhhhhHHHHHHhhh
Confidence            3566 488877  8888888888888854

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00041  Score=34.25  Aligned_cols=23  Identities=30%  Similarity=0.621  Sum_probs=13.2

Q ss_pred             ccCCCCCCCCcccCChHHHHHHHHH
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHMLQ  352 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~~~  352 (391)
                      ||.|..  |+.+|.++..|..||+.
T Consensus         1 py~C~~--CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTY--CNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSS--SSCEESSHHHHHHHHHS
T ss_pred             Ccccce--eeeeEeeccchhHhhhh
Confidence            455554  66666666666666554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00046  Score=37.71  Aligned_cols=25  Identities=24%  Similarity=0.571  Sum_probs=13.7

Q ss_pred             CCCccccccCCcCccccCHHHHHHhhh
Q psy11069        294 STKNFKCTHDGCKLLFSSKSALKRHNK  320 (391)
Q Consensus       294 ~~~~~~C~~~~C~~~f~~~~~l~~H~~  320 (391)
                      |.+||.|..  |++.|-++.++.+|..
T Consensus         2 GiKPYeC~~--C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNI--CAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSS--SCCEESCHHHHHHHHH
T ss_pred             CCCceeccc--hhhhhhhHHHHHHhhh
Confidence            445555544  5555555555555543

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0006  Score=33.14  Aligned_cols=18  Identities=22%  Similarity=0.473  Sum_probs=8.0

Q ss_pred             cccccCCHHHHHHHHhhc
Q psy11069        153 CMWGFFSKHKLLRHMTSH  170 (391)
Q Consensus       153 C~~~f~~~~~l~~H~~~h  170 (391)
                      |+..-...+.|..|+++|
T Consensus         9 cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           9 CDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             SCCEESSHHHHHHHHHHS
T ss_pred             ccchhcchhhHhhhhhcc
Confidence            444444444444444444

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.69  E-value=0.00057  Score=37.22  Aligned_cols=28  Identities=25%  Similarity=0.554  Sum_probs=18.3

Q ss_pred             CccccCcccccCCChhHHHHHHHHhcCCC
Q psy11069        267 EDLVCKGCGKQFKVPCRLREHYKAVHEST  295 (391)
Q Consensus       267 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  295 (391)
                      +.|.|.+|++.|.+...|--|++ .|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~-~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMN-VHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH-TTCCS
T ss_pred             CccCCCCCCCccCCcccccchHh-hhcch
Confidence            45667777777777777777765 66544

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.68  E-value=0.00058  Score=37.20  Aligned_cols=28  Identities=29%  Similarity=0.705  Sum_probs=16.7

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhcCC
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNEN  356 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  356 (391)
                      +.|.|.+  |++.|.+..+|--||+.|..+
T Consensus         4 r~~~C~~--C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSF--CKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTT--TCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCC--CCCccCCcccccchHhhhcch
Confidence            3456665  666666666666666666444

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.55  E-value=0.00077  Score=34.21  Aligned_cols=26  Identities=27%  Similarity=0.603  Sum_probs=11.6

Q ss_pred             ccccccCCcCccccCHHHHHHhhhccCC
Q psy11069        297 NFKCTHDGCKLLFSSKSALKRHNKSKHL  324 (391)
Q Consensus       297 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~  324 (391)
                      ||.|..  |++.|..+.-|.+|....|.
T Consensus         1 Pf~C~~--C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGL--CNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTT--TCCEESSHHHHHHHHTTTSC
T ss_pred             Cccccc--ccchhhHHHHHHHHHHHHhc
Confidence            344444  44444444444444443333

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00064  Score=35.90  Aligned_cols=29  Identities=14%  Similarity=0.280  Sum_probs=18.9

Q ss_pred             ceecCCCCCCC---cccChHHHHHHHHhcCCC
Q psy11069        110 LWSCPIVNCNF---TSVNLNTFKIHLLKHFDK  138 (391)
Q Consensus       110 ~~~C~~~~C~~---~f~~~~~l~~H~~~h~~~  138 (391)
                      .|.|.|.+|..   .|.....|..|+|.|+|+
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            46677766744   366667777777777654

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0011  Score=32.86  Aligned_cols=26  Identities=27%  Similarity=0.559  Sum_probs=14.7

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      +||+|.+  |.....+.++|..|++.-+
T Consensus         1 rPFkC~~--CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNY--CSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSS--SSCEESSHHHHHHHHHHHH
T ss_pred             CCcccce--ecccccCcchHHHHHHHHc
Confidence            3555665  6655566666666655443

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.29  E-value=0.0014  Score=31.56  Aligned_cols=26  Identities=31%  Similarity=0.814  Sum_probs=18.5

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      |.|.+..|++.|..-..|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            55666677777777777777777664

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0014  Score=32.08  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=16.8

Q ss_pred             eccCcCcccccccchhHHHHHHhh
Q psy11069        361 TCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       361 ~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      .|+..+|++.|.+.+.+++|+-+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            466667777777777777777665

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.15  E-value=0.0019  Score=30.55  Aligned_cols=24  Identities=33%  Similarity=0.999  Sum_probs=17.3

Q ss_pred             eeccCcCcccccccchhHHHHHHhhc
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      |.|+.  |-+.|+.+.++..|++.-|
T Consensus         2 ypcp~--cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPF--CFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTT--TCCEESCHHHHHHHHHHHT
T ss_pred             cCCch--hhHHhccccCceEEEEEec
Confidence            66777  7777777777777776655

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.002  Score=31.22  Aligned_cols=26  Identities=46%  Similarity=0.737  Sum_probs=22.5

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      .|+||.  |+.....++.|..|++.-|.
T Consensus         2 k~qcph--c~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           2 KFHCPH--CDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             SEECSS--SSCEESSHHHHHHHHHHTSC
T ss_pred             CccCCc--chhheeehhhhhHHhhhccc
Confidence            389999  99999999999999988774

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.0017  Score=31.34  Aligned_cols=23  Identities=35%  Similarity=0.697  Sum_probs=19.3

Q ss_pred             ceeccCcCcccccccchhHHHHHHh
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKH  383 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~  383 (391)
                      ||+|+.  ||+.|..+.+|..|..+
T Consensus         1 pf~c~k--cgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPK--CGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTT--TCCBCSSHHHHHHHHHH
T ss_pred             CCcccc--chhhhhhHhHHHHHHHH
Confidence            488988  99999999999988654

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.05  E-value=0.0016  Score=32.69  Aligned_cols=30  Identities=20%  Similarity=0.402  Sum_probs=24.6

Q ss_pred             CceecCCCCCCCcccChHHHHHHHHhcCCC
Q psy11069        109 QLWSCPIVNCNFTSVNLNTFKIHLLKHFDK  138 (391)
Q Consensus       109 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~  138 (391)
                      +.|.|.+.+|+..|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            468888888888888888888888888764

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0055  Score=29.87  Aligned_cols=23  Identities=30%  Similarity=0.722  Sum_probs=16.2

Q ss_pred             CCCCCCCcccCChHHHHHHHHHh
Q psy11069        331 CPLVTCGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       331 C~~~~C~~~f~~~~~L~~H~~~h  353 (391)
                      |+..+|++-|.+.+.+++|+.+|
T Consensus         4 CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           4 CPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCSTTCCCEESSHHHHHHHHGGG
T ss_pred             CCcccHHHHhhchHHHHHHhhcc
Confidence            55556777777777777777666

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.49  E-value=0.0045  Score=29.21  Aligned_cols=24  Identities=29%  Similarity=0.496  Sum_probs=17.3

Q ss_pred             cccCcccccCCChhHHHHHHHHhc
Q psy11069        269 LVCKGCGKQFKVPCRLREHYKAVH  292 (391)
Q Consensus       269 ~~C~~C~~~f~~~~~l~~H~~~~H  292 (391)
                      |.|+.|-+.|..+.++..|.+.+|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            567777777777777777776555

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.41  E-value=0.0047  Score=28.99  Aligned_cols=15  Identities=33%  Similarity=0.585  Sum_probs=6.2

Q ss_pred             cCccccCHHHHHHhh
Q psy11069        305 CKLLFSSKSALKRHN  319 (391)
Q Consensus       305 C~~~f~~~~~l~~H~  319 (391)
                      |...|-.+..|..|+
T Consensus         8 csqqfmqkkdlqshm   22 (26)
T d2dlqa1           8 CSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SCCEESSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0065  Score=29.40  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=15.4

Q ss_pred             cccCcccccCCChhHHHHHHHHhc
Q psy11069        269 LVCKGCGKQFKVPCRLREHYKAVH  292 (391)
Q Consensus       269 ~~C~~C~~~f~~~~~l~~H~~~~H  292 (391)
                      |.|+.|+-....++.|+.|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            566666666666666666666544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.10  E-value=0.0079  Score=28.22  Aligned_cols=21  Identities=33%  Similarity=0.884  Sum_probs=10.2

Q ss_pred             ccCCCCCCCCcccCChHHHHHHH
Q psy11069        328 MFPCPLVTCGKSFLRSEHLQEHM  350 (391)
Q Consensus       328 ~~~C~~~~C~~~f~~~~~L~~H~  350 (391)
                      ||+|.-  |...|.++.+|..||
T Consensus         2 pykcss--csqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSS--CSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSS--SCCEESSHHHHHHHH
T ss_pred             CCcccH--HHHHHHHHHHHHHHH
Confidence            344443  555555555554444

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0093  Score=29.21  Aligned_cols=24  Identities=38%  Similarity=0.834  Sum_probs=12.0

Q ss_pred             cccCCcCccccCHHHHHHhhhccC
Q psy11069        300 CTHDGCKLLFSSKSALKRHNKSKH  323 (391)
Q Consensus       300 C~~~~C~~~f~~~~~l~~H~~~~H  323 (391)
                      |..++|++.|+++.-|.-|.+..|
T Consensus         3 cdf~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           3 CDFPGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             CSSTTTCCEESSHHHHHHHHHHGG
T ss_pred             CCCCCchhhhccHHHHHhHHHHHH
Confidence            444455555555555555544333

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.89  E-value=0.011  Score=28.31  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=20.4

Q ss_pred             eecCCCCCCCcccChHHHHHHHHhcC
Q psy11069        111 WSCPIVNCNFTSVNLNTFKIHLLKHF  136 (391)
Q Consensus       111 ~~C~~~~C~~~f~~~~~l~~H~~~h~  136 (391)
                      |.|-+..|++.|+.-..|+.|+.+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            67777778888888888888877764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.0099  Score=28.64  Aligned_cols=22  Identities=41%  Similarity=0.854  Sum_probs=16.6

Q ss_pred             cccCccCCCCCCccccccCCHHHHHHHHh
Q psy11069        140 PFKCKLTTANNTPCMWGFFSKHKLLRHMT  168 (391)
Q Consensus       140 ~~~C~~~~~~~~~C~~~f~~~~~l~~H~~  168 (391)
                      ||+|..       ||+.+..+.+|..|..
T Consensus         1 pf~c~k-------cgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPK-------CGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTT-------TCCBCSSHHHHHHHHH
T ss_pred             CCcccc-------chhhhhhHhHHHHHHH
Confidence            577776       8888888888887764

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.74  E-value=0.015  Score=28.59  Aligned_cols=28  Identities=25%  Similarity=0.673  Sum_probs=22.7

Q ss_pred             eeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      |.|...+|+.+|+++.++.+|..+.|..
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfhn~   30 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFHNI   30 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHTTT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhccC
Confidence            7787778888888888888888877753

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.0077  Score=31.14  Aligned_cols=22  Identities=32%  Similarity=0.697  Sum_probs=18.2

Q ss_pred             ccccCcccccCCChhHHHHHHH
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYK  289 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~  289 (391)
                      .|.|..||++|..+..+.+|..
T Consensus         4 afvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhh
Confidence            5788888888888888888854

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.016  Score=32.65  Aligned_cols=26  Identities=42%  Similarity=0.928  Sum_probs=22.6

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHHhc
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQHN  354 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~  354 (391)
                      ..|.|.+  |+|.|++...|+.|...|-
T Consensus         5 ~l~pCG~--CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGL--CGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTT--TCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccc--cccccCCHHHHhHhHHhcC
Confidence            4588998  9999999999999998873

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.01  E-value=0.02  Score=28.09  Aligned_cols=27  Identities=44%  Similarity=0.940  Sum_probs=18.1

Q ss_pred             ccccccCCcCccccCHHHHHHhhhccC
Q psy11069        297 NFKCTHDGCKLLFSSKSALKRHNKSKH  323 (391)
Q Consensus       297 ~~~C~~~~C~~~f~~~~~l~~H~~~~H  323 (391)
                      .|.|..++|+..|.++..++.|...-|
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            466766677777777777777765434

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.022  Score=27.86  Aligned_cols=24  Identities=25%  Similarity=0.492  Sum_probs=14.9

Q ss_pred             ccCcCcccccccchhHHHHHHhhc
Q psy11069        362 CPYQDCLMSYVAKSSLYAHLKHVH  385 (391)
Q Consensus       362 C~~~~C~~~f~~~~~L~~H~~~~H  385 (391)
                      |...+|++.|.++..|..|.+-.|
T Consensus         3 cdf~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           3 CDFPGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             CSSTTTCCEESSHHHHHHHHHHGG
T ss_pred             CCCCCchhhhccHHHHHhHHHHHH
Confidence            455566666666666666665544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.037  Score=28.54  Aligned_cols=25  Identities=16%  Similarity=0.530  Sum_probs=15.2

Q ss_pred             eeccCcCcccccccchhHHHHHHhhcC
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      |.|..  |+++|+.+..+.+|-..-.|
T Consensus         5 fvcsk--cgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           5 FVCSK--CGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             EECSS--SCCEESCHHHHHHHHHHCCC
T ss_pred             eeecc--cccchhcchHHHHHhhhcCC
Confidence            56666  66666666666666554444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.032  Score=27.01  Aligned_cols=18  Identities=28%  Similarity=0.314  Sum_probs=9.3

Q ss_pred             CCcccCChHHHHHHHHHh
Q psy11069        336 CGKSFLRSEHLQEHMLQH  353 (391)
Q Consensus       336 C~~~f~~~~~L~~H~~~h  353 (391)
                      |.++.+++..|+.|.|+|
T Consensus         8 csyscsskaalrvh~rih   25 (28)
T d1x5wa1           8 CSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SSCEESSHHHHHHHHGGG
T ss_pred             cccccCcHHHHHHhhccc
Confidence            555555555555555544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=0.062  Score=25.97  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=23.0

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHS  386 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~  386 (391)
                      |-+|+.  |.++..++..|+.|.|.|-.
T Consensus         2 pekc~e--csyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSE--CSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSS--SSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcc--cccccCcHHHHHHhhccccC
Confidence            368988  99999999999999998854

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.032  Score=31.42  Aligned_cols=24  Identities=17%  Similarity=0.330  Sum_probs=21.8

Q ss_pred             ceeccCcCcccccccchhHHHHHHhh
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHV  384 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~  384 (391)
                      .|.|..  |+|.|+....|+.|...|
T Consensus         6 l~pCG~--CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGL--CGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTT--TCCCCSCHHHHHHHHHHH
T ss_pred             eeeccc--cccccCCHHHHhHhHHhc
Confidence            588999  999999999999998776

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.60  E-value=0.074  Score=27.08  Aligned_cols=21  Identities=33%  Similarity=0.781  Sum_probs=13.5

Q ss_pred             ccccCcccccCCChhHHHHHH
Q psy11069        268 DLVCKGCGKQFKVPCRLREHY  288 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~  288 (391)
                      .|.|.-||..|.+.+.|..|+
T Consensus         8 rf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHT
T ss_pred             ceeccccceeecChhHHHhhh
Confidence            466666666666666666663

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.23  E-value=0.17  Score=25.69  Aligned_cols=22  Identities=41%  Similarity=0.780  Sum_probs=13.3

Q ss_pred             ccccccCCcCccccCHHHHHHhhh
Q psy11069        297 NFKCTHDGCKLLFSSKSALKRHNK  320 (391)
Q Consensus       297 ~~~C~~~~C~~~f~~~~~l~~H~~  320 (391)
                      .|.|..  ||-.|++.+.|..|..
T Consensus         8 rf~c~p--cgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLP--CGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTT--TCCBCSCHHHHHHHTT
T ss_pred             ceeccc--cceeecChhHHHhhhh
Confidence            456655  6666666666666654

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.17  Score=24.72  Aligned_cols=26  Identities=31%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             ccccCcccccCCChhHHHHHHHHhcC
Q psy11069        268 DLVCKGCGKQFKVPCRLREHYKAVHE  293 (391)
Q Consensus       268 ~~~C~~C~~~f~~~~~l~~H~~~~H~  293 (391)
                      .|.|..||+...+...++-|+...|.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            36788888888888888888765554

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.14  E-value=0.14  Score=26.36  Aligned_cols=27  Identities=22%  Similarity=0.532  Sum_probs=20.5

Q ss_pred             CccccCcccccCCChhHHHHHHHHhcC
Q psy11069        267 EDLVCKGCGKQFKVPCRLREHYKAVHE  293 (391)
Q Consensus       267 ~~~~C~~C~~~f~~~~~l~~H~~~~H~  293 (391)
                      ..|.|.+|.+++...+++-+|....|.
T Consensus         7 ~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           7 HTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            467888888888888888888766664

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.93  E-value=0.15  Score=26.25  Aligned_cols=27  Identities=22%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      .|+|.+  |.+.|+..+++-+|.-+-|+.
T Consensus         8 ~yRC~~--C~r~YTHISNFCRHyvtSHk~   34 (37)
T d2drpa1           8 TYRCKV--CSRVYTHISNFCRHYVTSHKR   34 (37)
T ss_dssp             EEECTT--TCCEESSHHHHHHHHHHHSSS
T ss_pred             EEEeeh--hhHHHHHHHHHHHHHHhhccc
Confidence            588877  888888888888887776654

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=0.3  Score=27.99  Aligned_cols=29  Identities=24%  Similarity=0.635  Sum_probs=21.1

Q ss_pred             ceeccCcCcccccccchhHHHHHHhhcCC
Q psy11069        359 KFTCPYQDCLMSYVAKSSLYAHLKHVHST  387 (391)
Q Consensus       359 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  387 (391)
                      ||+|-.+||-..|+-..+|..|.+..|..
T Consensus        20 pyrcvhqgc~aaftiq~nlilhy~avh~s   48 (61)
T d1x3ca1          20 PYRCVHQGCFAAFTIQQNLILHYQAVHKS   48 (61)
T ss_dssp             SCBCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred             ceeeeccchhhhhhhhhhHHHHHHHHhhh
Confidence            47777777777777777777777776653

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.75  E-value=0.47  Score=27.11  Aligned_cols=27  Identities=30%  Similarity=0.704  Sum_probs=11.2

Q ss_pred             ccccccCCcCccccCHHHHHHhhhccC
Q psy11069        297 NFKCTHDGCKLLFSSKSALKRHNKSKH  323 (391)
Q Consensus       297 ~~~C~~~~C~~~f~~~~~l~~H~~~~H  323 (391)
                      ||.|...+|...|.-..+|.-|.+.+|
T Consensus        20 pyrcvhqgc~aaftiq~nlilhy~avh   46 (61)
T d1x3ca1          20 PYRCVHQGCFAAFTIQQNLILHYQAVH   46 (61)
T ss_dssp             SCBCCSTTCCCBCSSHHHHHHHHHHHS
T ss_pred             ceeeeccchhhhhhhhhhHHHHHHHHh
Confidence            444443344444444444444443333

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.64  E-value=1  Score=21.82  Aligned_cols=22  Identities=27%  Similarity=0.682  Sum_probs=11.7

Q ss_pred             cCCCCCCCCcccCChHHHHHHHHH
Q psy11069        329 FPCPLVTCGKSFLRSEHLQEHMLQ  352 (391)
Q Consensus       329 ~~C~~~~C~~~f~~~~~L~~H~~~  352 (391)
                      |.|..  ||+...+...++-|+..
T Consensus         3 ftc~h--cgkqlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHH--CGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSS--SCCCCSSHHHHHHHHHH
T ss_pred             eechh--HHHHHhhccCceEEEee
Confidence            44554  55555555555555443

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=0.24  Score=30.82  Aligned_cols=22  Identities=18%  Similarity=0.558  Sum_probs=13.6

Q ss_pred             eeccCcCcccccccchhHHHHHHh
Q psy11069        360 FTCPYQDCLMSYVAKSSLYAHLKH  383 (391)
Q Consensus       360 ~~C~~~~C~~~f~~~~~L~~H~~~  383 (391)
                      |-|..  |++.|.+...|..|+++
T Consensus        16 fYCv~--C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          16 HRCLA--CARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             SEETT--TTEECSSHHHHHHHTTC
T ss_pred             Eeccc--ccCccCCHHHHHHHHcc
Confidence            55666  66666666666666543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=0.16  Score=31.72  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=17.2

Q ss_pred             CccCCCCCCCCcccCChHHHHHHHHH
Q psy11069        327 RMFPCPLVTCGKSFLRSEHLQEHMLQ  352 (391)
Q Consensus       327 ~~~~C~~~~C~~~f~~~~~L~~H~~~  352 (391)
                      ..|-|..  |++.|.+...|..|+++
T Consensus        14 gqfYCv~--C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLA--CARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETT--TTEECSSHHHHHHHTTC
T ss_pred             CEEeccc--ccCccCCHHHHHHHHcc
Confidence            3477776  88888888777777653