Psyllid ID: psy11096

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHKI
ccHHHHHHHHHHHHHccccccEEEEEEcccccHHHHccccHHHHHHccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHccccccEEEEEccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEccccccccccccEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHcccc
ccHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEEcccHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHccHHHHHHHHHHHHHHcccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHccccccEEEccccccccHHHcEEEccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHcccccccccccHHHcccccccccccccccHHccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHccc
MNVVRAIKQYVIKMteqsgpgmKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKelknpkfgsyyiyftniipkadiktlaeydeqeSVREIEELYAdylpilphffslniplcsnghfwdpvhlvRSSQGLIALLLSLnknpviryQASSEMTKRLAEKVKETIIKEEKlfdmrqgdavpVLLIIDrtcdpitpllsQWTYQAMLHELLTINnnrvdlshvsgispdlKQVVVSyehddfyssnlfmnyGEIGQTIKLLMDDFNKRakrhegvcdfyssnlfmnyGEIGQTIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQFKMKKLltsgkirdVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVldysnehskythhndsfsatQDVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDlvkgklkdthfpyldpyqgrsegsrwYQDIIVFMVGGTTYEECLCVHqmntssgnnARAILLGATTVHNSTSFMQQVRSHKI
MNVVRAIKQYVIkmteqsgpgmKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIkeeklfdmrqgdAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQFKMKKlltsgkirdvEAVRLVMLYAIRYehhsnndlsGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHndsfsatqDVMVKKTQRFLKDLKGvenvytqhepvlKDILDDLVKGKLKDthfpyldpyqgrsegsrwYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTvhnstsfmqqvrshki
MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAekvketiikeekLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHKI
***VRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQAS****KRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFN************QDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHN*SFSATQDVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTV***************
MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKET*****************VLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLS*************VSYEHDDFYSSNLFMNYGEIGQTIKLLMDD****************************TIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVL**************************************NVYTQHEPVLKDILDDLVKGKLKDTHFPY****************IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSH**
MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFN**********SIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTS**********
MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQ****GSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHK*
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MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query554 2.2.26 [Sep-21-2011]
O08700570 Vacuolar protein sorting- yes N/A 0.902 0.877 0.489 1e-154
P97390570 Vacuolar protein sorting- yes N/A 0.902 0.877 0.488 1e-154
Q9NRW7570 Vacuolar protein sorting- yes N/A 0.902 0.877 0.488 1e-150
Q54GE3563 Vacuolar protein sorting- yes N/A 0.963 0.948 0.389 1e-105
O49048569 Vacuolar protein sorting- yes N/A 0.884 0.861 0.339 3e-88
Q09805558 Vacuolar protein sorting- yes N/A 0.962 0.955 0.362 5e-88
P38932577 Vacuolar protein sorting- yes N/A 0.936 0.899 0.313 6e-75
Q54QC8598 Protein transport protein no N/A 0.915 0.847 0.216 1e-25
Q62753594 Syntaxin-binding protein no N/A 0.913 0.851 0.233 1e-21
Q64324593 Syntaxin-binding protein no N/A 0.893 0.834 0.229 2e-21
>sp|O08700|VPS45_RAT Vacuolar protein sorting-associated protein 45 OS=Rattus norvegicus GN=Vps45 PE=2 SV=1 Back     alignment and function desciption
 Score =  545 bits (1403), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/596 (48%), Positives = 378/596 (63%), Gaps = 96/596 (16%)

Query: 1   MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQ 60
           MNVV A+KQY+ KM E SGPGMK+LL+DK+TT IVSMV+TQSEILQ+EVY+FE+I+   +
Sbjct: 1   MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60

Query: 61  CDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQE 120
              E MKHLK I  LRPTKEN+  L +EL+ PK+  Y+IYF+N+I K+D+K+LAE DEQE
Sbjct: 61  ---EIMKHLKAICFLRPTKENVDSLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQE 117

Query: 121 SVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRY 180
            V E++E Y DY+ + PH FSLNI  C  G  WDP  L R++QGL ALLLSL K P+IRY
Sbjct: 118 VVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRY 177

Query: 181 QASSEMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLH 240
           Q SSE  KRL E VK+ I KE +LF+ R+ +  P+LLI+DR  D ITPLL+QWTYQAM+H
Sbjct: 178 QLSSEAAKRLGECVKQVISKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVH 237

Query: 241 ELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKR 300
           ELL INNNR+DLS V GIS DL++VV+S E+D+FY++N+++N+ EIG  IK LM+DF K 
Sbjct: 238 ELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQK- 296

Query: 301 AKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQFK 360
                                             KR K QQK+ESI DMKAFVENYPQFK
Sbjct: 297 ----------------------------------KRPKEQQKLESIADMKAFVENYPQFK 322

Query: 361 -----------------------------------------------MKKLLTSGKIRDV 373
                                                          +K+LL + K+ + 
Sbjct: 323 KMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTEF 382

Query: 374 EAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDS 433
           +AVRLVMLYA+ YE HS+N L GL+  LR  GV+E   ++   V++Y     K    +D 
Sbjct: 383 DAVRLVMLYALHYERHSSNSLPGLIVDLRSKGVAEKYRKLVSAVVEYG---GKRVRGSDL 439

Query: 434 FSATQDVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRS 493
           FS    V +  T++FLK LKGVENVYTQH+P L + LD L+KGKLK+  +PYL P   R 
Sbjct: 440 FSPKDAVAI--TKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRD 497

Query: 494 EGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQV 549
                 QDIIVF++GG TYEE L V+ +N ++      I+LG TT+HN+ SF+++V
Sbjct: 498 RP----QDIIVFVIGGATYEEALTVYNLNRTTP--GVRIVLGGTTIHNTKSFLEEV 547
May play a role in vesicle-mediated protein trafficking from the Golgi stack through the trans-Golgi network.
Rattus norvegicus (taxid: 10116)
>sp|P97390|VPS45_MOUSE Vacuolar protein sorting-associated protein 45 OS=Mus musculus GN=Vps45 PE=1 SV=1 Back     alignment and function description
>sp|Q9NRW7|VPS45_HUMAN Vacuolar protein sorting-associated protein 45 OS=Homo sapiens GN=VPS45 PE=1 SV=1 Back     alignment and function description
>sp|Q54GE3|VPS45_DICDI Vacuolar protein sorting-associated protein 45 OS=Dictyostelium discoideum GN=vps45 PE=1 SV=1 Back     alignment and function description
>sp|O49048|VPS45_ARATH Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2 Back     alignment and function description
>sp|Q09805|VPS45_SCHPO Vacuolar protein sorting-associated protein 45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps45 PE=3 SV=1 Back     alignment and function description
>sp|P38932|VPS45_YEAST Vacuolar protein sorting-associated protein 45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS45 PE=1 SV=2 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description
>sp|Q62753|STXB2_RAT Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
383851725562 PREDICTED: vacuolar protein sorting-asso 0.902 0.889 0.489 1e-161
340725880562 PREDICTED: vacuolar protein sorting-asso 0.902 0.889 0.494 1e-161
328783525562 PREDICTED: vacuolar protein sorting-asso 0.902 0.889 0.495 1e-161
380016268562 PREDICTED: vacuolar protein sorting-asso 0.902 0.889 0.495 1e-161
332022953562 Vacuolar protein sorting-associated prot 0.900 0.887 0.496 1e-158
328783527555 PREDICTED: vacuolar protein sorting-asso 0.889 0.888 0.494 1e-157
291230004574 PREDICTED: vacuolar protein sorting 45-l 0.900 0.869 0.481 1e-156
229577349571 vacuolar protein sorting 45 [Nasonia vit 0.904 0.877 0.474 1e-154
387019807572 Vacuolar protein sorting-associated prot 0.906 0.877 0.488 1e-154
147898485570 vacuolar protein sorting 45 homolog [Xen 0.906 0.880 0.5 1e-154
>gi|383851725|ref|XP_003701382.1| PREDICTED: vacuolar protein sorting-associated protein 45-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 292/597 (48%), Positives = 401/597 (67%), Gaps = 97/597 (16%)

Query: 1   MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQ 60
           MN+  A+K Y+ +MTE+SGPGMK+LL+DKQTTSIVS++++QSEI  +EVY+FE+I+ +T+
Sbjct: 1   MNLTVALKFYITRMTEESGPGMKVLLMDKQTTSIVSLLYSQSEIFMKEVYLFERIDTNTR 60

Query: 61  CDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQE 120
              E +KHLKCI  +RPTKENI +LC EL+ PK+G+YYIYF+NII KAD+K LAE DEQE
Sbjct: 61  N--EGLKHLKCIVFIRPTKENIEILCNELRCPKYGTYYIYFSNIIAKADVKLLAESDEQE 118

Query: 121 SVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRY 180
            VRE+ E YADYL I PH FSL I  CS G  W+PVHL R+  G+I++LLS+ + P IRY
Sbjct: 119 VVREVHEYYADYLAISPHLFSLGINGCSQGLLWNPVHLHRTVLGIISVLLSIKRCPYIRY 178

Query: 181 QASSEMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLH 240
           Q SSEM KRLAEK++E + KE   F+ RQ D+ P+LLI+DR  DP+TPLL+QWTYQAM+H
Sbjct: 179 QCSSEMAKRLAEKIREVLSKESSSFEFRQ-DSSPILLILDRRDDPVTPLLNQWTYQAMVH 237

Query: 241 ELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKR 300
           ELLTINNNRV+LSHV GIS +LK+VV+S EHD+FY++NL++N+GEIGQTIK LMD+F K+
Sbjct: 238 ELLTINNNRVNLSHVKGISKELKEVVLSAEHDEFYANNLYLNFGEIGQTIKELMDEFQKK 297

Query: 301 AKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQF- 359
           AK+H                                    QKVESI DMK FVE YP F 
Sbjct: 298 AKKH------------------------------------QKVESIADMKNFVETYPLFK 321

Query: 360 ----------------------------------------------KMKKLLTSGKIRDV 373
                                                         K+K+L+ S +IR++
Sbjct: 322 KLSGTVSKHVTVVGELSSLVEKHNLLRVSELEQELSCQNDHSLQLQKIKELINSQQIREI 381

Query: 374 EAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDS 433
           ++VRLVMLYA+ YE ++NND++GL+++L+  G+SE  +++   +L+YS  +++ ++  D 
Sbjct: 382 DSVRLVMLYALHYEKYANNDINGLLNLLKNKGISEKYIKLVYNILEYSGINARQSNLFD- 440

Query: 434 FSATQDVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRS 493
               ++ + K T++  K L GV+N+YTQH P+L + L+DL+KG+L    FPYL    G +
Sbjct: 441 ----REAVAKITKKLFKGLNGVDNIYTQHTPLLNETLEDLIKGRLSLQTFPYL----GNT 492

Query: 494 EGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVR 550
             S+  QDIIVFM+GGTTYEE L V+ +N    N+   I+LG TT+HNSTSF+++++
Sbjct: 493 MVSKRPQDIIVFMIGGTTYEESLTVYNLNKQ--NSGIKIILGGTTIHNSTSFLEEIQ 547

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340725880|ref|XP_003401293.1| PREDICTED: vacuolar protein sorting-associated protein 45-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328783525|ref|XP_003250308.1| PREDICTED: vacuolar protein sorting-associated protein 45-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|380016268|ref|XP_003692109.1| PREDICTED: vacuolar protein sorting-associated protein 45-like [Apis florea] Back     alignment and taxonomy information
>gi|332022953|gb|EGI63219.1| Vacuolar protein sorting-associated protein 45 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328783527|ref|XP_003250309.1| PREDICTED: vacuolar protein sorting-associated protein 45-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|291230004|ref|XP_002734962.1| PREDICTED: vacuolar protein sorting 45-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|229577349|ref|NP_001153358.1| vacuolar protein sorting 45 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|387019807|gb|AFJ52021.1| Vacuolar protein sorting-associated protein 45 [Crotalus adamanteus] Back     alignment and taxonomy information
>gi|147898485|ref|NP_001088217.1| vacuolar protein sorting 45 homolog [Xenopus laevis] gi|54038413|gb|AAH84162.1| LOC495045 protein [Xenopus laevis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
UNIPROTKB|F1MDA6570 VPS45 "Uncharacterized protein 0.962 0.935 0.490 1.6e-132
UNIPROTKB|E2QVW9572 VPS45 "Uncharacterized protein 0.962 0.931 0.490 1.2e-131
UNIPROTKB|Q9NRW7570 VPS45 "Vacuolar protein sortin 0.962 0.935 0.486 1.5e-131
ZFIN|ZDB-GENE-060503-526568 vps45 "vacuolar protein sortin 0.963 0.940 0.485 1.9e-131
RGD|621267570 Vps45 "vacuolar protein sortin 0.963 0.936 0.491 2.4e-131
UNIPROTKB|F1SDG5572 VPS45 "Uncharacterized protein 0.962 0.931 0.488 3.1e-131
MGI|MGI:891965570 Vps45 "vacuolar protein sortin 0.963 0.936 0.489 3.1e-131
UNIPROTKB|F6Y241562 VPS45 "Uncharacterized protein 0.947 0.934 0.483 5.3e-127
FB|FBgn0261049574 Vps45 "Vacuolar protein sortin 0.965 0.932 0.452 3.1e-122
UNIPROTKB|H9L0B9563 VPS45 "Uncharacterized protein 0.949 0.934 0.435 6.8e-111
UNIPROTKB|F1MDA6 VPS45 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
 Identities = 276/563 (49%), Positives = 376/563 (66%)

Query:     1 MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQ 60
             MNVV A+KQY+ KM E SGPGMK+LL+DK+TT IVSMV+TQSEILQ+EVY+FE+I+   +
Sbjct:     1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60

Query:    61 CDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQE 120
                E MKHLK I  LRPTKEN+  L +EL+ PK+  Y+IYF+N+I K+D+K+LAE DEQE
Sbjct:    61 ---EIMKHLKAICFLRPTKENVDYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQE 117

Query:   121 SVREIEELYADYLPILPHFFSLNIPLCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRY 180
              V E++E Y DY+ + PH FSLNI  C  G  WDPV L R++QGL ALLLSL K P+IRY
Sbjct:   118 VVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPVQLSRTTQGLTALLLSLKKCPMIRY 177

Query:   181 QASSEMTKRLAXXXXXXXXXXXXLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLH 240
             Q SSE  KRLA            LF+ R+ +  P+LLI+DR  D ITPLL+QWTYQAM+H
Sbjct:   178 QLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVH 237

Query:   241 ELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKR 300
             ELL INNNR+DLS V GIS DL++VV+S E+D+FY++N+++N+ EIG  IK LM+DF K+
Sbjct:   238 ELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKK 297

Query:   301 AKRH----EGVCDF--YSSNLFMNYGEIGQTIK---LLMDDFNKRAKSQQ--KVESIQDM 349
               +     E + D   +  N +  + ++  T+     ++ + ++    +   +V  ++  
Sbjct:   298 KPKEQQKLESIADMKAFVEN-YPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQE 356

Query:   350 KAFVENYPQF--KMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVS 407
              A   ++      +K+LL + ++ + +A RLVMLYA+ YE HS+N L GLM  LR  GVS
Sbjct:   357 LACQNDHSSALQNVKRLLQNPRVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVS 416

Query:   408 ESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENVYTQHEPVLK 467
             E   ++   V++Y     K    +D FS    V +  T++FLK LKGVENVYTQH+P L 
Sbjct:   417 EKYRKLVSAVIEYGG---KRVRGSDLFSPKDAVAI--TKQFLKGLKGVENVYTQHQPFLH 471

Query:   468 DILDDLVKGKLKDTHFPYLDPYQGRSEGSRWYQDIIVFMVGGTTYEECLCVHQMN-TSSG 526
             + LD L+KGKLK+  +PYL P   R       QDIIVF++GG TYEE L V+ +N T+ G
Sbjct:   472 ETLDHLIKGKLKENLYPYLGPSTLRDRP----QDIIVFIIGGATYEEALTVYNLNRTTPG 527

Query:   527 NNARAILLGATTVHNSTSFMQQV 549
                R I+LG TTVHN+ SF+++V
Sbjct:   528 --VR-IVLGGTTVHNTKSFLEEV 547
GO:0010008 "endosome membrane" evidence=IEA
GO:0000139 "Golgi membrane" evidence=IEA
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
UNIPROTKB|E2QVW9 VPS45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRW7 VPS45 "Vacuolar protein sorting-associated protein 45" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-526 vps45 "vacuolar protein sorting 45 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|621267 Vps45 "vacuolar protein sorting 45 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDG5 VPS45 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:891965 Vps45 "vacuolar protein sorting 45 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F6Y241 VPS45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0261049 Vps45 "Vacuolar protein sorting 45" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|H9L0B9 VPS45 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O08700VPS45_RATNo assigned EC number0.48990.90250.8771yesN/A
P97390VPS45_MOUSENo assigned EC number0.48820.90250.8771yesN/A
Q09805VPS45_SCHPONo assigned EC number0.36210.96200.9551yesN/A
P38932VPS45_YEASTNo assigned EC number0.31300.93680.8994yesN/A
Q9NRW7VPS45_HUMANNo assigned EC number0.48820.90250.8771yesN/A
O49048VPS45_ARATHNo assigned EC number0.33930.88440.8611yesN/A
Q54GE3VPS45_DICDINo assigned EC number0.38900.96380.9484yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
pfam00995554 pfam00995, Sec1, Sec1 family 1e-131
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 2e-68
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  393 bits (1013), Expect = e-131
 Identities = 180/600 (30%), Positives = 294/600 (49%), Gaps = 118/600 (19%)

Query: 22  MKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKEN 81
            K+L+LDK+TT I+S V T S++L+  V + E IE       E +  L  I  +RPT+EN
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVENIE----NKREPLPDLPAIYFIRPTEEN 56

Query: 82  IALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFS 141
           +  +  +LKNPK+ SY+I+FTN + ++ ++ LAE D  E V++++E+Y D++P+    FS
Sbjct: 57  VDRIIDDLKNPKYKSYHIFFTNSLSRSLLERLAEADVAELVKQVKEIYLDFIPLESDLFS 116

Query: 142 LNIPLCS---NGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETI 198
           L +P           D   L R ++GL +LLL+L + P+IRYQ +S   +RLAEK+ + +
Sbjct: 117 LELPNSFRDLYSPDGDESDLERIAEGLFSLLLTLGEIPIIRYQGNSA-AERLAEKLAQLL 175

Query: 199 IKEEKLFDMRQGD-----AVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLS 253
            +   LFD            PVLLI+DR+ D ITPLL QWTYQAM+H+LL I NNRV L 
Sbjct: 176 QENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDLLGIKNNRVTLD 235

Query: 254 HVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSS 313
              G   + K+ VV  E+D F+  N  +++ ++ + IK  + ++ +  K           
Sbjct: 236 -TPGNGGESKKEVVLDENDPFWVENRHLHFPDVAEKIKKELKEYKEENK----------- 283

Query: 314 NLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQDMKAFVENYPQFKMKK---------- 363
                                    S +K +SI D+K FVE  P+F+ +K          
Sbjct: 284 ------------------------NSNKKKKSISDLKEFVEKLPEFQKEKGKLSLHLNLA 319

Query: 364 -------------------------------------LLTSGKIRDVEAVRLVMLYAIRY 386
                                                LL + K+   + +RL++LY++  
Sbjct: 320 EELMKQIKERKLDKVSELEQDLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSL-R 378

Query: 387 EHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQ 446
           +     DL  L  +L   G+    + +   +       S+      +FS  +D +    +
Sbjct: 379 DGGKGKDLEDLRKLLLHAGIGPEALNLVKNLEQLGGLLSR--TSGSNFSDLRDKLKLLVK 436

Query: 447 RFLK-DLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGS--------- 496
              K   KGV+NV ++++P+LK IL+DL+KGKL    +PY DP    + G          
Sbjct: 437 EVSKSLPKGVKNVLSRYKPLLKRILEDLIKGKLDTDSYPYFDPKLANASGPQGSLRSKRP 496

Query: 497 -------RWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQV 549
                  +  Q IIVF+VGG TY E   +++++     N + +++G+T++ N  SF++++
Sbjct: 497 TAAGQGRQPPQRIIVFVVGGVTYSEARALYELSKK--TNGKRVIIGSTSILNPESFLEEL 554

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 554
KOG1299|consensus549 100.0
KOG1300|consensus593 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
KOG1301|consensus621 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1302|consensus600 100.0
>KOG1299|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.7e-96  Score=725.93  Aligned_cols=526  Identities=49%  Similarity=0.829  Sum_probs=475.5

Q ss_pred             CcHHHHHHHHHHHhhccCCCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcCCHH
Q psy11096          1 MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKE   80 (554)
Q Consensus         1 m~l~~~~~~~i~~~l~~~~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~pt~~   80 (554)
                      |||....|.||.+|+..+++|.|||++|+.|..++|++++.|+++++.|++++.|+++   .|+.+.+..||+|++||++
T Consensus         1 Mnlv~~~k~yi~~m~~~~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~---~rE~~khLkcvvfiRPT~e   77 (549)
T KOG1299|consen    1 MNLVSSSKKYIEKMIQESGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNK---SRERIKHLKCVVFIRPTPE   77 (549)
T ss_pred             CchHHHHHHHHHHHHHhcCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcch---hhHHhhCceEEEEeccChH
Confidence            9999999999999999888899999999999999999999999999999999999996   5899999999999999999


Q ss_pred             HHHHHHHHhcCCCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCC-CCCChHHHH
Q psy11096         81 NIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNG-HFWDPVHLV  159 (554)
Q Consensus        81 ~i~~i~~d~~~~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~-~~~~~~~l~  159 (554)
                      |++++++++++|+|..|||+|++.++...++.||+++....|..|+|+++||+++++++|||+.|++|.. +.|++..++
T Consensus        78 niq~L~~ELrnPry~~Y~lyFsN~i~ks~le~LAesD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~~~w~~~~l~  157 (549)
T KOG1299|consen   78 NIQLLIEELRNPRYGEYHLYFSNIISKSDLERLAESDEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESSLNWDPGALT  157 (549)
T ss_pred             HHHHHHHHhcCCcceeEEEEEeccCCHHHHHHHHhcchHHHHHHHHHHHHhhhccCCceeecCCchhhccccccChhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999976 779999999


Q ss_pred             HHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhhhcccCCCCCCCCcEEEEeeCCCCCcccccchhhHHHHH
Q psy11096        160 RSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAML  239 (554)
Q Consensus       160 ~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~LiIlDR~~Dl~TpLl~~~TYq~Ll  239 (554)
                      ++.+||++++.+++..|.|||++++..|+++|+.+...+..+.++|+++.+...|+|+|+||+.|++||||+|||||||+
T Consensus       158 R~~~GI~AllLsLK~~P~IRYq~~S~~~~~lAe~vs~~i~~E~~lFdfr~~~~~p~LLiLDR~~DpvTPLL~qWTYQaMv  237 (549)
T KOG1299|consen  158 RSTQGIIALLLSLKKKPVIRYQTSSRACKRLAEEVSYRITKESTLFDFRRTDSPPLLLILDRRDDPVTPLLNQWTYQAMV  237 (549)
T ss_pred             HhHhhHHHHHHhccCCCeeEeecCCHHHHHHHHHHHHHHhhhhhhcccccCCCCCeEEEEecCCCCCchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999988888999988888899999999999999999999999999


Q ss_pred             HhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhccCcccccccccccCh
Q psy11096        240 HELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNY  319 (554)
Q Consensus       240 ~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  319 (554)
                      ||++||++|+|++...++.+++.++++||+.+|+||+..++.||+|+|+.|...+++|+.+++.++.         -.++
T Consensus       238 HEl~gi~nnrvdls~~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~fq~k~~~~~~---------iesi  308 (549)
T KOG1299|consen  238 HELLGIKNNRVDLSKVPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSEFQFKTKTNSN---------IESI  308 (549)
T ss_pred             HHHhccccCEEeeccCCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhchh---------hhhH
Confidence            9999999999999998888777789999999999999999999999999999999999997765542         4579


Q ss_pred             hhHHHHHHHHHHHHHHHH-HHhhhhhcHHHHHHHHH----------------ccC---hhH-HHHHHhCCCCChHHHHHH
Q psy11096        320 GEIGQTIKLLMDDFNKRA-KSQQKVESIQDMKAFVE----------------NYP---QFK-MKKLLTSGKIRDVEAVRL  378 (554)
Q Consensus       320 ~el~~~v~~l~~~~~~~~-~~~~~~~~i~~~~~~~~----------------~~~---~~~-i~~ll~~~~~~~~dklRL  378 (554)
                      .+|+.|+.++| +|++.. ...+++.-+.|+.+.++                +.+   +++ |.++|.+++++..|++||
T Consensus       309 ~Dmk~Fve~YP-efkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~~~i~~LL~n~~vs~~d~lrL  387 (549)
T KOG1299|consen  309 ADMKNFVEDYP-EFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGADFNDIKKLLQNEKVSEIDRLRL  387 (549)
T ss_pred             HHHHHHHHhcH-HHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhHHHHHHHHcCCcccHHHHHHH
Confidence            99999999998 577742 23233333333333222                111   222 888999999999999999


Q ss_pred             HHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchhhhhhhhhhhhcccCCcccc
Q psy11096        379 VMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENV  458 (554)
Q Consensus       379 l~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~~~~~~~~~~~~  458 (554)
                      +|||+|.++..++.+...|.+.|+..|-.  .-..+..|.+++|...+   +.++|+..+  ....++++.++++|++++
T Consensus       388 v~lYaLr~e~~~~~~~~~L~~~l~~~~~~--~~~~v~~ll~~~G~~~R---~~dlf~~~~--~v~i~R~~~kglkgvENV  460 (549)
T KOG1299|consen  388 VALYALRYERHPPNELRQLPQILREQGPK--KPELVPFLLKYAGLHVR---QGDLFGPND--LVPIARRFIKGLKGVENV  460 (549)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHHhcCCC--cchhHHHHHHhcCcccc---cccccCcch--hHHHHHHHhhccCcchhh
Confidence            99999999999999999999988887743  45678888999998877   789999775  556778888899999999


Q ss_pred             cccCcchHHHHHHHHhcCCCCCCCccccCCCCCCCCCCCCCCeEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEcccc
Q psy11096        459 YTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATT  538 (554)
Q Consensus       459 ~s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~  538 (554)
                      |.+|.|.++++++++.+|++++..||++++...+    .+++.|||||+||+||+|++.++++..+  +.|.+|+.|+|.
T Consensus       461 ytQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~s~----~~pq~IIVfivGGaTYEEa~~V~~~N~t--n~g~rvvLgGtt  534 (549)
T KOG1299|consen  461 YTQHQPLLKSTLEDLFRGRLKEIDYPFLGSQTSR----DRPQDIIVFIVGGATYEEARVVHELNAT--NPGVRVVLGGTT  534 (549)
T ss_pred             hhccCHHHHHHHHHHHhcccccCCCccccccccc----CCCceEEEEEECCccHHHHHHHHHHhcC--CCceEEEEcceE
Confidence            9999999999999999999999999999875444    7889999999999999999999999977  589999999999


Q ss_pred             ccChhHHHHHHhcC
Q psy11096        539 VHNSTSFMQQVRSH  552 (554)
Q Consensus       539 i~~~~~fl~~l~~l  552 (554)
                      |+|..+|++++...
T Consensus       535 vlntk~f~~di~~a  548 (549)
T KOG1299|consen  535 VLNTKSFIDEIMAA  548 (549)
T ss_pred             EechHHHHHHHhcc
Confidence            99999999998754

>KOG1300|consensus Back     alignment and domain information
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>KOG1301|consensus Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1302|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 3e-21
2xhe_A650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 1e-20
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 2e-19
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 4e-19
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 4e-19
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 4e-19
1mqs_A671 Crystal Structure Of Sly1p In Complex With An N-Ter 3e-13
1y9j_A159 Solution Structure Of The Rat Sly1 N-Terminal Domai 4e-04
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 126/588 (21%), Positives = 235/588 (39%), Gaps = 87/588 (14%)
Query: 23  KILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENI 82
           K+L++D+ +  +VS      EI+   + + E I        E +  L+ + L+ PT+E++
Sbjct: 26  KVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRR----EPLPLLEAVYLITPTEESV 81
Query: 83  ALLCKELKNPKFGSY---YIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHF 139
             L  + +NP    Y   +I+FT   P+   K L +      ++ ++E+   +LP     
Sbjct: 82  KCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQI 141
Query: 140 FSLNIPLCSNGHFWDPVHLV-------RSSQGLIALLLSLNKNPVIRYQASSEMTKRLAX 192
           FSL+ P      +++P           R ++ +  L  +L + P +RY++  +     A 
Sbjct: 142 FSLDSPDTFQV-YYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQ 200
Query: 193 XXXXX----XXXXXXLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNN 248
                          + +  Q D    LLI+DR  DPI+PLL + T+QAM ++LL I N+
Sbjct: 201 LVQQKLDAYRADDPTMGEGPQKDRS-QLLILDRGFDPISPLLHELTFQAMAYDLLPIEND 259
Query: 249 RVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDF--NKR---AKR 303
                +  G     K+V++  E DD +      +   + Q +   +  F   KR   A  
Sbjct: 260 VYKYVNTGGNEVPEKEVLLD-EKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAAD 318
Query: 304 HEGVCDF----------------YSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQ 347
             G+ D                 YS++L +        +K      +K  K +Q +    
Sbjct: 319 KAGIKDLSQMLKKMPQYQKELSKYSTHLHL----AEDCMKQYQQHVDKLCKVEQDLAMGT 374
Query: 348 DMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVS 407
           D            +  +L   KI   + +R+++LY I     S  +L+ L+     I   
Sbjct: 375 DADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQ-HAHIPAE 433
Query: 408 ESLVQMPLQVL------DYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENVYTQ 461
           E  +   +Q L      D         +H  +    Q     +  R+             
Sbjct: 434 EKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQMSRWT------------ 481
Query: 462 HEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSR--------WYQD-----------I 502
             P +KDI++  V+ KL   H+P+L+    R    +        W++D           +
Sbjct: 482 --PYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRL 539
Query: 503 IVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVR 550
           I+F+VGG +Y E    +++  ++ NN   ++LG+T +      ++ +R
Sbjct: 540 IIFVVGGISYSEMRSAYEVTQTAKNNWE-VILGSTHILTPEGLLRDLR 586
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 7e-90
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 3e-88
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 6e-88
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 3e-79
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 2e-77
1y9j_A159 SEC1 family domain containing protein 1; membrane 1e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
 Score =  287 bits (735), Expect = 7e-90
 Identities = 109/598 (18%), Positives = 237/598 (39%), Gaps = 81/598 (13%)

Query: 3   VVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCD 62
           V R IK  V     +     KI+LLD+ TT ++S     +++L+  + + E I      +
Sbjct: 14  VWRKIKTAVFDDCRKE-GEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIY----KN 68

Query: 63  YENMKHLKCIALLRPTKENIALLCKELK---NPKFGSYYIYFTNIIPKADIKTLAEYDEQ 119
            E ++ +K +  + PT +++    ++       K+ + YIYFT+  P +    +      
Sbjct: 69  REPVRQMKALYFISPTPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKA-SCS 127

Query: 120 ESVREIEELYADYLPILPHFFSLNIPLCSNGHF--------WDPVHLVRSSQGLIALLLS 171
           +S+R  +E+   ++P     ++L++P      +           V +   ++ ++ +  +
Sbjct: 128 KSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCAT 187

Query: 172 LNKNPVIRYQA-SSEMTKRLAEKVKETIIKEEKLFD--MRQGDAVPVLLIIDRTCDPITP 228
           L++NP +RY++   +   +LA+ V++ +    K+ +  + +G     LLIIDR  DP++ 
Sbjct: 188 LDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFDPVST 247

Query: 229 LLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQ 288
           +L + T+QAM ++LL I N+              ++  V  E DD +      +   + +
Sbjct: 248 VLHELTFQAMAYDLLPIENDTYKYKT-----DGKEKEAVLEEDDDLWVRVRHRHIAVVLE 302

Query: 289 TIKLLMDDFNKRAKRHEGVCDFY---------------SSNLFMNYGEIGQTIKLLMDDF 333
            I  LM + +   K  EG                     S   ++       +     + 
Sbjct: 303 EIPKLMKEISSTKKATEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKLNI 362

Query: 334 NKRAKSQQKVESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNND 393
            K  K++Q +    D +          +  +L +    + + +R V+LY       +  +
Sbjct: 363 EKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFGINGTTEEN 422

Query: 394 LSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLK 453
           L  L+  ++    S+                      N S      V   +  + L+  +
Sbjct: 423 LDRLIHNVKIEDDSD-------------------MIRNWSHLGVPIVPPSQQAKPLRKDR 463

Query: 454 GVENVY--TQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSRW------------- 498
             E  +  ++  P +KDI++D +  +L    +PY         GS               
Sbjct: 464 SAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSGAVSARQKPRTNYLE 523

Query: 499 -----YQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRS 551
                   +I+F++GG TY E  C ++++ +  +    +++G+T +      +  ++ 
Sbjct: 524 LDRKNGSRLIIFVIGGITYSEMRCAYEVSQAHKS--CEVIIGSTHILTPRKLLDDIKM 579
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.96
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
Probab=100.00  E-value=6.2e-96  Score=807.75  Aligned_cols=530  Identities=20%  Similarity=0.341  Sum_probs=425.5

Q ss_pred             CcHHHHHHHHHH-Hhhcc--CCCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcC
Q psy11096          1 MNVVRAIKQYVI-KMTEQ--SGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRP   77 (554)
Q Consensus         1 m~l~~~~~~~i~-~~l~~--~~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~p   77 (554)
                      |+|++++|+.|. ++++.  ..+||||||+|+.++++||+++++++|++|||++++.|++    +|+|+|+++|||||+|
T Consensus         1 ~~l~~~~~~~~~~~i~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~----~r~~~~~~~aIy~v~P   76 (591)
T 1epu_A            1 MALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINR----RREPLPLLEAVYLITP   76 (591)
T ss_dssp             -CHHHHHHHHHHHHTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSS----CCCCEEEEEEEEEECC
T ss_pred             CChHHHHHHHHHHHHHHhhccCCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeeccc----CCCCCCCCCeEEEecC
Confidence            899999999997 67753  2479999999999999999999999999999999999998    4899999999999999


Q ss_pred             CHHHHHHHHHHhcC---CCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCCC--
Q psy11096         78 TKENIALLCKELKN---PKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHF--  152 (554)
Q Consensus        78 t~~~i~~i~~d~~~---~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~~--  152 (554)
                      +.+||++|++|+++   |+|++|||+|+|.+++.+++.|++++..+.|.+|.|+++||+|+|+|+|||++|++|..++  
T Consensus        77 t~~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~  156 (591)
T 1epu_A           77 TEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNP  156 (591)
T ss_dssp             CHHHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHSTTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCG
T ss_pred             CHHHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhCchHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCC
Confidence            99999999999986   8999999999999999999999999988899899999999999999999999999877542  


Q ss_pred             ----CChHHHHHHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhh---hcccCCCCCCCCcEEEEeeCCCCC
Q psy11096        153 ----WDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKE---EKLFDMRQGDAVPVLLIIDRTCDP  225 (554)
Q Consensus       153 ----~~~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~---~~~~~~~~~~~~~~LiIlDR~~Dl  225 (554)
                          ++.+.++++|++|+++|.++|.+|.|||+|+++.|++||+.+++++.+.   ...+..+..+.+++|||+||++|+
T Consensus       157 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~  236 (591)
T 1epu_A          157 SRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDP  236 (591)
T ss_dssp             GGSTTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCS
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEECCCccc
Confidence                5678999999999999999999999999998778999999999888642   223332234578999999999999


Q ss_pred             cccccchhhHHHHHHhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhcc
Q psy11096        226 ITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHE  305 (554)
Q Consensus       226 ~TpLl~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~  305 (554)
                      +|||+||||||||+||+|||++|.|+++..++...+.+++.|+ ++|+||.++||+||++|++.|.+.+++|++..+...
T Consensus       237 vTPLlhq~TYqali~dll~I~~n~v~~~~~~~~~~~~k~~~L~-~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~  315 (591)
T 1epu_A          237 ISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLD-EKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGT  315 (591)
T ss_dssp             SGGGSCCCBHHHHHHHHSCCBTTEECC-----------CEECC-GGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC---
T ss_pred             hhhhhhhhhHHHHHHHHhCcCCCEEEEEecCCCCccceEEeCC-CCChHHHHHhccCHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999998654333455788997 899999999999999999999999999998765322


Q ss_pred             CcccccccccccChhhHHHHHHHHHHHHHHHHH---Hhhhhhc-----H-------HHHHH-HHHccC--------hh-H
Q psy11096        306 GVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAK---SQQKVES-----I-------QDMKA-FVENYP--------QF-K  360 (554)
Q Consensus       306 ~~~~~~~~~~~~~~~el~~~v~~l~~~~~~~~~---~~~~~~~-----i-------~~~~~-~~~~~~--------~~-~  360 (554)
                      .       ....+++||+++|+++| +++++..   .|.++.+     +       .++++ ++....        .+ .
T Consensus       316 ~-------~~~~s~~~lk~~v~~lP-~~~~~~~~l~~H~~ia~~l~~~i~~~l~~~~~~EQ~l~~g~d~~g~~~k~~~~~  387 (591)
T 1epu_A          316 A-------ADKAGIKDLSQMLKKMP-QYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRN  387 (591)
T ss_dssp             ------------CCCCCHHHHHTHH-HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCTTSCBCCCCHHH
T ss_pred             c-------ccccCHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccchHHHH
Confidence            0       12467999999999998 5777643   3443211     1       11111 111111        11 2


Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchhh
Q psy11096        361 MKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDV  440 (554)
Q Consensus       361 i~~ll~~~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~~  440 (554)
                      +.++|.+++.++.|||||+|||+++++|+++++++   ++++++|++.+++.++.+|+++|+...+.......+..  . 
T Consensus       388 i~~~l~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~---~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~~~~~~~~--~-  461 (591)
T 1epu_A          388 IVPILLDQKISAYDKIRIILLYIIHKGGISEENLA---KLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQP--Y-  461 (591)
T ss_dssp             HHHHHTCTTSCHHHHHHHHHHHHHHHTCBCHHHHH---HHHHHTTCCHHHHHHHHHGGGGTCCCBSCTTSCCCCCT--T-
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHcCCCCHHHHH---HHHHhcCCCHHHHHHHHHHHHcCCccccCCcccccccc--c-
Confidence            77788788999999999999999999999987765   46789999888999999999998765441111111110  0 


Q ss_pred             hhhhhhhhhcccCCcccccccCcchHHHHHHHHhcCCCCCCCccccCCCCCCC----------C------C---CCCCCe
Q psy11096        441 MVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRS----------E------G---SRWYQD  501 (554)
Q Consensus       441 ~~~~~k~~~~~~~~~~~~~s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~~~----------~------~---~~~~~~  501 (554)
                         ..+.....++++.|+|+||+|+++++||.+++|+++.++||++++++..+          +      +   ...+++
T Consensus       462 ---~~~~~~~~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  538 (591)
T 1epu_A          462 ---HTHNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPR  538 (591)
T ss_dssp             ---SGGGSCCCCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------------CCCCE
T ss_pred             ---cccccccCCCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCccccCCccccccCcccCCCCccccCCCCe
Confidence               01111234567889999999999999999999999999999998753110          0      0   123567


Q ss_pred             EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcCC
Q psy11096        502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHK  553 (554)
Q Consensus       502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l~  553 (554)
                      +|||||||+||+|+++||+|+++. ..+++|+||||+|+||++|+++|..||
T Consensus       539 viVF~vGG~Ty~E~~~l~~l~~~~-~~~~~viigsT~i~n~~~fl~~l~~l~  589 (591)
T 1epu_A          539 LIIFVVGGISYSEMRSAYEVTQTA-KNNWEVILGSTHILTPEGLLRDLRKIS  589 (591)
T ss_dssp             EEEEEETCBCHHHHHHHHHHHTSS-CSSCEEEEEESSBCCHHHHHHHHHTTS
T ss_pred             EEEEEECCCCHHHHHHHHHHHhhc-cCCCeEEEecCCcCCHHHHHHHHHHhc
Confidence            999999999999999999999831 268999999999999999999999987
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 554
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-105
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-105
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-102
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  326 bits (836), Expect = e-105
 Identities = 114/597 (19%), Positives = 236/597 (39%), Gaps = 68/597 (11%)

Query: 5   RAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYE 64
             I   V+   +++    K+L++D+ +  +VS      EI+   + + E I        E
Sbjct: 8   EKIMNDVVLAVKKNA-EWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRR----E 62

Query: 65  NMKHLKCIALLRPTKENIALLCKELK---NPKFGSYYIYFTNIIPKADIKTLAEYDEQES 121
            +  L+ + L+ PT+E++  L  + +   NP++   +I+FT   P+   K L +      
Sbjct: 63  PLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARF 122

Query: 122 VREIEELYADYLPILPHFFSLNIPLCSNGHF------WDPVHLVRSSQGLIALLLSLNKN 175
           ++ ++E+   +LP     FSL+ P     ++          +  R ++ +  L  +L + 
Sbjct: 123 IKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEY 182

Query: 176 PVIRYQASSEMTKRLAEKVKETI---IKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQ 232
           P +RY++  +     A+ V++ +     ++             LLI+DR  DPI+PLL +
Sbjct: 183 PSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHE 242

Query: 233 WTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKL 292
            T+QAM ++LL I N+     +  G     K+V++  E DD +      +   + Q +  
Sbjct: 243 LTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLD-EKDDLWVEMRHQHIAVVSQNVTK 301

Query: 293 LMDDFNKRAKRH-----EGVCDF------------YSSNLFMNYGEIGQTIKLLMDDFNK 335
            +  F    +        G+ D               S    +       +K      +K
Sbjct: 302 KLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDK 361

Query: 336 RAKSQQKVESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLS 395
             K +Q +    D            +  +L   KI   + +R+++LY I     S  +L+
Sbjct: 362 LCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLA 421

Query: 396 GLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGV 455
            L+              +P +     N+              +  + +      +  +  
Sbjct: 422 KLVQ----------HAHIPAEEKWIINDMQNLGVPIIQDGGRRK-IPQPYHTHNRKERQA 470

Query: 456 ENVY--TQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSE--------GSRWY------ 499
           ++ Y  ++  P +KDI++  V+ KL   H+P+L+    R             W+      
Sbjct: 471 DHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQA 530

Query: 500 -----QDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRS 551
                  +I+F+VGG +Y E    +++  ++ NN   ++LG+T +      ++ +R 
Sbjct: 531 SYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWE-VILGSTHILTPEGLLRDLRK 586
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-89  Score=757.08  Aligned_cols=524  Identities=17%  Similarity=0.336  Sum_probs=418.2

Q ss_pred             CcHHHHHHHHHHH-hhccCC--CceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcC
Q psy11096          1 MNVVRAIKQYVIK-MTEQSG--PGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRP   77 (554)
Q Consensus         1 m~l~~~~~~~i~~-~l~~~~--~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~p   77 (554)
                      |.|.++++++|++ +|+...  ..|||||+|+.++++||+++++++|++|||++++.|++    +|+|+|+++|||||+|
T Consensus         1 ~~~~~~~~~~~l~~~~~~v~~~~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~----~r~~~~~~~aIy~i~P   76 (589)
T d1dn1a_           1 IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK----RREPLPSLEAVYLITP   76 (589)
T ss_dssp             CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTS----CCCCCTTSEEEEEECC
T ss_pred             CChHHHHHHHHHHHHHhccCCCCccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccC----CCCCCCCCCEEEEEcC
Confidence            7899999999986 887642  34999999999999999999999999999999999988    4899999999999999


Q ss_pred             CHHHHHHHHHHhcC---CCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCC---
Q psy11096         78 TKENIALLCKELKN---PKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGH---  151 (554)
Q Consensus        78 t~~~i~~i~~d~~~---~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~---  151 (554)
                      +.+|+++|++|+++   ++|++|||+|+|++++.+++.|++++..+.|.+|.|+++||+|+|+|+|||++|++|..+   
T Consensus        77 t~~ni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~le~La~~~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~~  156 (589)
T d1dn1a_          77 SEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP  156 (589)
T ss_dssp             CHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred             CHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhcCccccCCeEEEEecceeeCCCCEEEecCCchHHHhcCC
Confidence            99999999999986   479999999999999999999999999999999999999999999999999999988754   


Q ss_pred             ---CCChHHHHHHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhhh---cccCCCCCCCCcEEEEeeCCCCC
Q psy11096        152 ---FWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEE---KLFDMRQGDAVPVLLIIDRTCDP  225 (554)
Q Consensus       152 ---~~~~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~~---~~~~~~~~~~~~~LiIlDR~~Dl  225 (554)
                         ..+.+.++++|+||+++|.++|.+|.|||+|++..|+.+|+++++++.+..   ..+.....+++++|||+||++|+
T Consensus       157 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~Dl  236 (589)
T d1dn1a_         157 HKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDP  236 (589)
T ss_dssp             GGTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCS
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHHHHHHHHHhcCcccCCCcccCCceEEEeccCccc
Confidence               245678999999999999999999999999998889999999998886421   11222234567899999999999


Q ss_pred             cccccchhhHHHHHHhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhcc
Q psy11096        226 ITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHE  305 (554)
Q Consensus       226 ~TpLl~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~  305 (554)
                      +|||+||||||||+||+|||++|.|+++.......+.+++.++ +.|++|.++|++||++|++.|.+.++++++..+...
T Consensus       237 iTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~~~~~~k~~~l~-~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~~  315 (589)
T d1dn1a_         237 SSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLD-EDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNT  315 (589)
T ss_dssp             STTTSCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEECS-TTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             cccccccccHHHHHHHHhcccCCeEEecCCCCCcccceEeecC-CCcHHHHHhhcccHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999998754443444666775 899999999999999999999999999988755322


Q ss_pred             CcccccccccccChhhHHHHHHHHHHHHHHHHH---Hhhhhh------------cHHHHHH-HHHcc-Ch--------hH
Q psy11096        306 GVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAK---SQQKVE------------SIQDMKA-FVENY-PQ--------FK  360 (554)
Q Consensus       306 ~~~~~~~~~~~~~~~el~~~v~~l~~~~~~~~~---~~~~~~------------~i~~~~~-~~~~~-~~--------~~  360 (554)
                              +...+++||+++|+.+|+ +++...   .|.++.            ...++++ ++... +.        -.
T Consensus       316 --------~~~~s~~e~~~~v~~lp~-~~~~~~~l~~H~~i~~~l~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~  386 (589)
T d1dn1a_         316 --------GEKTTMRDLSQMLKKMPQ-YQKELSKYSTHLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRA  386 (589)
T ss_dssp             -------------CCSSCCTTTTCGG-GHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSBCSSCCBCCCTHHH
T ss_pred             --------cccccHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhhHHHHHHH
Confidence                    123456667777776653 444322   233221            1111111 11110 10        12


Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchhh
Q psy11096        361 MKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDV  440 (554)
Q Consensus       361 i~~ll~~~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~~  440 (554)
                      +.+++.+.+.+++|+|||+|||+++++|+++++++.+.+   ..|++...+.++.+|+.+|....+   .+..+....  
T Consensus       387 i~~~l~~~~~~~~d~LRL~~l~~l~~~g~~~~~~~~l~~---~~~~~~~~~~~~~~l~~lg~~~~~---~~~~~~~~~--  458 (589)
T d1dn1a_         387 IVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQ---HAQIPPEDSEIITNMAHLGVPIVT---DSTLRRRSK--  458 (589)
T ss_dssp             HHHHHHCTTSCHHHHHHHHHHHHHHTTCBCHHHHHHHHH---HHTCCHHHHHHHHHGGGGTCCCBC---CCGGGCCCC--
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH---HcCCChHHHHHHHHHHHhCCcccc---Cchhhcccc--
Confidence            677787889999999999999999999999988877654   567777888999999998865433   111110000  


Q ss_pred             hhhhhhhhhcccCCcccccccCcchHHHHHHHHhcCCCCCCCccccCCCCCCC-------------------CCCCCCCe
Q psy11096        441 MVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRS-------------------EGSRWYQD  501 (554)
Q Consensus       441 ~~~~~k~~~~~~~~~~~~~s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~~~-------------------~~~~~~~~  501 (554)
                           ........+.+|+|+||+|+++++++.++++.++.+.||++.+.+...                   +....+++
T Consensus       459 -----~~~~~~~~~~~~~~s~y~Pl~~~l~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (589)
T d1dn1a_         459 -----PERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPR  533 (589)
T ss_dssp             -----CCCCCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------CCCCE
T ss_pred             -----cccccCCcccccccccchHHHHHHHHHHHhCCCCcccCcccCCCccccccccccccccccccccCCCCcCCCCCE
Confidence                 011123456789999999999999999999999999999987542110                   01234679


Q ss_pred             EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcCC
Q psy11096        502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHK  553 (554)
Q Consensus       502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l~  553 (554)
                      ||||||||+||+|+++||+|+++.  .+++|+||||+|+||++|+++|++||
T Consensus       534 viVF~vGGvTy~E~~~l~~l~~~~--~~~~iiiGsT~iln~~~fl~~l~~L~  583 (589)
T d1dn1a_         534 LIIFILGGVSLNEMRCAYEVTQAN--GKWEVLIGSTHILTPQKLLDTLKKLN  583 (589)
T ss_dssp             EEEEEETCEEHHHHHHHHHHHHHH--SSCEEEEEESSEECHHHHHHHHTTTT
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHc--CCceEEEEeCCEecHHHHHHHHHHhC
Confidence            999999999999999999999872  45799999999999999999999987
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure