Psyllid ID: psy11118

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
VSDDTCSISGGGAGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEESFFDFE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEccccccccccccc
Coil and Loop (DISEMBL)
vsddtcsisgggagggrggsssgrrrkpvLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICdmrgedspyvapdsstglitsgtqgdtaltahahteesffdfe
Flexible Loop (DISEMBL)
vsddtcsisgggagggrggsssgrrrkpvlnareknmrrlesnererMRMHSLNDAFQslreviphvkkerrlskietltlAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEESFFDFE
Low Complexity Region (SEG)
VSDDTCSIsgggagggrggsssgrrrKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEESFFDFE
Disordered region (IsUnstruct)
*************************************************************EVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG***************************************
Disordered Region (DISOPRED)
********************************************RERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNV*********************************************
Disordered Region (DISEMBL)
*************************RKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEESFFDFE
Disordered Region (DISPRO)
****************************************ESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VSDDTCSISGGGAGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEESFFDFE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
B6VQA1	390	Protein dimmed OS=Drosoph	yes	N/A	0.569	0.2	0.794	2e-30
Q7RTS1	189	Class A basic helix-loop-	yes	N/A	0.540	0.391	0.632	1e-20
P70562	197	Class A basic helix-loop-	yes	N/A	0.503	0.350	0.648	2e-20
Q9QYC3	197	Class A basic helix-loop-	yes	N/A	0.503	0.350	0.648	3e-20
O42202	350	Neurogenic differentiatio	no	N/A	0.416	0.162	0.614	1e-14
Q6NYU3	327	Neurogenic differentiatio	no	N/A	0.518	0.217	0.534	3e-14
Q9W6C7	317	Neurogenic differentiatio	no	N/A	0.416	0.179	0.631	3e-14
Q91616	352	Neurogenic differentiatio	N/A	N/A	0.416	0.161	0.596	1e-13
P48986	337	Neurogenic differentiatio	no	N/A	0.416	0.169	0.596	5e-13
Q08DI0	337	Neurogenic differentiatio	no	N/A	0.416	0.169	0.596	5e-13

>sp|B6VQA1|DIMM_DROME Protein dimmed OS=Drosophila melanogaster GN=dimm PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 70/78 (89%)

Query: 24  RRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAK 83
           RRRK  LNA+E+NMRRLESNERERMRMHSLNDAFQSLREVIPHV+ ERRLSKIETLTLAK
Sbjct: 143 RRRKGALNAKERNMRRLESNERERMRMHSLNDAFQSLREVIPHVEMERRLSKIETLTLAK 202

Query: 84  NYIMALTNVICDMRGEDS 101
           NYI+ LT++I   R E++
Sbjct: 203 NYIINLTHIILSKRNEEA 220

Transcription factor that regulates neurosecretory (NS) cell function and neuroendocrine cell fate. Acts as a master regulator of common NS functions such as Phm expression and neuropeptide production. Plays a role as a regulator of peptide-containing large dense-core vesicle (LDCV) production and peptidergic cell differentiation. Controls transcription of FMRFamide in Tv neuronal cells and Fur1 in Ap-let cells (Tvb and dorsal apterous cells). Also required for up-regulation of Phm in Tv and Ap-let cells, and expression of three neuropeptide genes, Dms, FMRFamide and Lk. Influences both regulated and constitutive secretory activity in neuroendocrine cells at embryonic and postembryonic level. Loss of function studies show reduced cellular levels of various neuropeptides and neuropeptide biosynthetic enzymes.
Drosophila melanogaster (taxid: 7227)

>sp|Q7RTS1|BHA15_HUMAN Class A basic helix-loop-helix protein 15 OS=Homo sapiens GN=BHLHA15 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 62/79 (78%), Gaps = 5/79 (6%)

Query: 23  GRRRKPVLNA----REKNM-RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIE 77
           GRRR+P  +     R+ ++ RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIE
Sbjct: 56  GRRRRPGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIE 115

Query: 78  TLTLAKNYIMALTNVICDM 96
           TLTLAKNYI +LT  I  M
Sbjct: 116 TLTLAKNYIKSLTATILTM 134

Plays a role in controlling the transcriptional activity of MYOD1, ensuring that expanding myoblast populations remain undifferentiated. Repression may occur through muscle-specific E-box occupancy by homodimers. May also negatively regulate bHLH-mediated transcription through an N-terminal repressor domain. Serves as a key regulator of acinar cell function, stability, and identity. Also required for normal organelle localization in exocrine cells and for mitochondrial calcium ion transport. May function as a unique regulator of gene expression in several different embryonic and postnatal cell lineages. Binds to the E-box consensus sequence 5'-CANNTG-3'.

Homo sapiens (taxid: 9606)

>sp|P70562|BHA15_RAT Class A basic helix-loop-helix protein 15 OS=Rattus norvegicus GN=Bhlha15 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 57/74 (77%), Gaps = 5/74 (6%)

Query: 38  RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97
           RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI +LT  I  M 
Sbjct: 73  RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMS 132

Query: 98  -----GEDSPYVAP 106
                G ++P  AP
Sbjct: 133 SSRLPGLEAPGPAP 146

Plays a role in controlling the transcriptional activity of MyoD, ensuring that expanding myoblast populations remain undifferentiated. Repression may occur through muscle-specific E-box occupancy by homodimers. May also negatively regulate bHLH-mediated transcription through an N-terminal repressor domain. Serves as a key regulator of acinar cell function, stability, and identity. Also required for normal organelle localization in exocrine cells and for mitochondrial calcium ion transport. May function as a unique regulator of gene expression in several different embryonic and postnatal cell lineages. Binds to the E-box consensus sequence 5'-CANNTG-3'.

Rattus norvegicus (taxid: 10116)

>sp|Q9QYC3|BHA15_MOUSE Class A basic helix-loop-helix protein 15 OS=Mus musculus GN=Bhlha15 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 57/74 (77%), Gaps = 5/74 (6%)

Query: 38  RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97
           RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI +LT  I  M 
Sbjct: 73  RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMS 132

Query: 98  -----GEDSPYVAP 106
                G ++P  AP
Sbjct: 133 SSRLPGLEAPGPAP 146

Plays a role in controlling the transcriptional activity of MyoD, ensuring that expanding myoblast populations remain undifferentiated. Repression may occur through muscle-specific E-box occupancy by homodimers. May also negatively regulate bHLH-mediated transcription through an N-terminal repressor domain. Serves as a key regulator of acinar cell function, stability, and identity. Also required for normal organelle localization in exocrine cells and for mitochondrial calcium ion transport. May function as a unique regulator of gene expression in several different embryonic and postnatal cell lineages. Binds to the E-box consensus sequence 5'-CANNTG-3'.

Mus musculus (taxid: 10090)

>sp|O42202|NDF1_DANRE Neurogenic differentiation factor 1 OS=Danio rerio GN=neurod1 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 37  MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
           MRR+++N RER RMH LNDA +SLR+V+P   K ++LSKIETL LAKNYI AL+ ++
Sbjct: 96  MRRMKANARERNRMHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 152

May act as a transcriptional activator. Differentiation factor required for neurogenesis. Acts as an upstream activator of isl1.

Danio rerio (taxid: 7955)

>sp|Q6NYU3|NDF6A_DANRE Neurogenic differentiation factor 6-A OS=Danio rerio GN=neurod6a PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 2/73 (2%)

Query: 23  GRRRKPVLNAR--EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLT 80
           G R+K +  AR     +RR+E+N RER RMH LN+A  SLR+V+P   K ++LSKIETL 
Sbjct: 72  GPRKKKMTKARVDRVKVRRMEANARERNRMHGLNNALDSLRKVVPCYSKTQKLSKIETLR 131

Query: 81  LAKNYIMALTNVI 93
           LAKNYI AL+ ++
Sbjct: 132 LAKNYIWALSEIL 144

Differentiation factor required for neurogenesis. Acts as an upstream activator of isl1.

Danio rerio (taxid: 7955)

>sp|Q9W6C7|NDF6B_DANRE Neurogenic differentiation factor 6-B OS=Danio rerio GN=neurod6b PE=1 SV=3

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 44/57 (77%)

Query: 37  MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
           MRR E+N RER RMH LNDA +SLR+V+P   K ++LSKIETL LAKNYI AL+  +
Sbjct: 78  MRRQEANARERSRMHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIWALSETL 134

Differentiation factor required for neurogenesis (By similarity). Does not act as an upstream activator of isl1.

Danio rerio (taxid: 7955)

>sp|Q91616|NDF1_XENLA Neurogenic differentiation factor 1 OS=Xenopus laevis GN=neurod1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 37  MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
           +RR+++N RER RMH LNDA  SLR+V+P   K ++LSKIETL LAKNYI AL+ ++
Sbjct: 102 VRRMKANARERNRMHGLNDALDSLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 158

Acts as a transcriptional activator. Plays a role as a differentiation factor during neurogenesis. Required for the conversion of cells within the neural plate and ventral ectoderm into differentiated neurons. Promotes the differentiation of late-born retinal amacrine cells, but not early-born retinal ganglion cells. Its function is inhibited at early stages of retinal cells differentiation.

Xenopus laevis (taxid: 8355)

>sp|P48986|NDF6_MOUSE Neurogenic differentiation factor 6 OS=Mus musculus GN=Neurod6 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 37  MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
            RR E+N RER RMH LNDA  +LR+V+P   K ++LSKIETL LAKNYI AL+ ++
Sbjct: 94  FRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150

Activates E box-dependent transcription in collaboration with TCF3/E47. May be a trans-acting factor involved in the development and maintenance of the mammalian nervous system. Transactivates the promoter of its own gene.

Mus musculus (taxid: 10090)

>sp|Q08DI0|NDF6_BOVIN Neurogenic differentiation factor 6 OS=Bos taurus GN=NEUROD6 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 37  MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
            RR E+N RER RMH LNDA  +LR+V+P   K ++LSKIETL LAKNYI AL+ ++
Sbjct: 94  FRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150

Activates E box-dependent transcription in collaboration with TCF3/E47. May be a trans-acting factor involved in the development and maintenance of the mammalian nervous system. Transactivates the promoter of its own gene.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
328777481	203	PREDICTED: neurogenin-3-like [Apis melli	0.846	0.571	0.655	1e-35
383847777	203	PREDICTED: neurogenin-3-like [Megachile	0.846	0.571	0.655	1e-35
242023267	228	Class B basic helix-loop-helix protein,	0.686	0.412	0.776	6e-35
193650155	200	PREDICTED: hypothetical protein LOC10015	0.751	0.515	0.699	1e-34
307167440	204	Class B basic helix-loop-helix protein 8	0.846	0.568	0.649	2e-34
391341702	289	PREDICTED: uncharacterized protein LOC10	0.795	0.377	0.660	3e-34
391327703	186	PREDICTED: neurogenic differentiation fa	0.635	0.467	0.781	4e-34
307192581	201	Class B basic helix-loop-helix protein 8	0.839	0.572	0.643	4e-34
332023537	202	Class A basic helix-loop-helix protein 1	0.795	0.539	0.660	2e-33
156537960	204	PREDICTED: neurogenin-3 [Nasonia vitripe	0.664	0.446	0.769	2e-33

>gi|328777481|ref|XP_003249350.1| PREDICTED: neurogenin-3-like [Apis mellifera] gi|340716683|ref|XP_003396825.1| PREDICTED: neurogenin-3-like [Bombus terrestris] gi|350425784|ref|XP_003494231.1| PREDICTED: neurogenin-3-like [Bombus impatiens] gi|380013485|ref|XP_003690786.1| PREDICTED: neurogenin-3-like [Apis florea]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 89/116 (76%)

Query: 17  RGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKI 76
           RGG  + RRRK  ++ARE+N+RRLESNERERMRMHSLNDAF+ LREVIPHVK ER+LSKI
Sbjct: 65  RGGPPTTRRRKSGISARERNLRRLESNERERMRMHSLNDAFEQLREVIPHVKMERKLSKI 124

Query: 77  ETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEES 132
           ETLTLAKNYIMALTNVIC+MRGE+ PY   D   G  +  + G   L+     EE+
Sbjct: 125 ETLTLAKNYIMALTNVICEMRGEEQPYTFVDGECGSSSGDSTGQLELSGGEQPEEA 180

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847777|ref|XP_003699529.1| PREDICTED: neurogenin-3-like [Megachile rotundata]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 89/116 (76%)

Query: 17  RGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKI 76
           RGG  + RRRK  ++ARE+N+RRLESNERERMRMHSLNDAF+ LREVIPHVK ER+LSKI
Sbjct: 65  RGGPPTTRRRKSGISARERNLRRLESNERERMRMHSLNDAFEQLREVIPHVKMERKLSKI 124

Query: 77  ETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEES 132
           ETLTLAKNYIMALTNVIC+MRGE+ PY   D   G  +  + G   L+     EE+
Sbjct: 125 ETLTLAKNYIMALTNVICEMRGEEQPYTFVDGECGSSSGDSTGQLELSGGEQPEEA 180

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023267|ref|XP_002432057.1| Class B basic helix-loop-helix protein, putative [Pediculus humanus corporis] gi|212517415|gb|EEB19319.1| Class B basic helix-loop-helix protein, putative [Pediculus humanus corporis]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 84/94 (89%)

Query: 25  RRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKN 84
           RRKPVLNARE+N+RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKN
Sbjct: 124 RRKPVLNARERNIRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKN 183

Query: 85  YIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQ 118
           YI+ALT+VICD+RG++    +  + T ++TS  Q
Sbjct: 184 YILALTSVICDIRGDNKLMQSGRTETTVVTSSNQ 217

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193650155|ref|XP_001944687.1| PREDICTED: hypothetical protein LOC100158851 [Acyrthosiphon pisum]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 85/103 (82%)

Query: 1   VSDDTCSISGGGAGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSL 60
           +SDDTC+ S G    G G   SG RRK   + ++KN+RRLESNERER+RMHS+NDAFQSL
Sbjct: 45  ISDDTCTGSDGQGRNGSGAIRSGNRRKRKSSGKDKNVRRLESNERERLRMHSINDAFQSL 104

Query: 61  REVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDSPY 103
           REVIPHVKK+RRLSKIETLTLAKNYI+ALT +IC+MRGE  P+
Sbjct: 105 REVIPHVKKDRRLSKIETLTLAKNYIIALTKIICEMRGELDPF 147

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167440|gb|EFN61016.1| Class B basic helix-loop-helix protein 8 [Camponotus floridanus]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 1/117 (0%)

Query: 17  RGGSS-SGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSK 75
           RGG+  + RRRK  ++ARE+N+RRLESNERERMRMHSLNDAF+ LREVIPHVK ER+LSK
Sbjct: 66  RGGAPPTTRRRKSGISARERNLRRLESNERERMRMHSLNDAFEQLREVIPHVKMERKLSK 125

Query: 76  IETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEES 132
           IETLTLAKNYIMALTNVIC+MRGE+ PY   D   G  +  + G   L+     +ES
Sbjct: 126 IETLTLAKNYIMALTNVICEMRGEEQPYTFVDGECGSSSGDSTGQLELSGGEQPDES 182

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391341702|ref|XP_003745166.1| PREDICTED: uncharacterized protein LOC100904190 [Metaseiulus occidentalis]

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 86/109 (78%)

Query: 11  GGAGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKE 70
             A       +S RRR+  L+ARE+N+RRLESNERERMRMHSLNDAFQ+LREVIPHV  E
Sbjct: 99  ANANQNPASQNSLRRRRTTLSARERNLRRLESNERERMRMHSLNDAFQALREVIPHVAME 158

Query: 71  RRLSKIETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQG 119
           R+LSKIETLTLAKNYIMALTNVICD+RG++ PY   ++ T + +SG  G
Sbjct: 159 RKLSKIETLTLAKNYIMALTNVICDIRGDERPYQFCEAETSIDSSGYNG 207

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391327703|ref|XP_003738336.1| PREDICTED: neurogenic differentiation factor 1-like [Metaseiulus occidentalis]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 79/87 (90%)

Query: 17  RGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKI 76
           +   ++GRRRK  L++RE+N+RRLESNERERMRMHSLNDAFQ+LREVIPHV  ER+LSKI
Sbjct: 9   KADDAAGRRRKTTLSSRERNLRRLESNERERMRMHSLNDAFQALREVIPHVAMERKLSKI 68

Query: 77  ETLTLAKNYIMALTNVICDMRGEDSPY 103
           ETLTLAKNYIMALTNVICDMRG++ PY
Sbjct: 69  ETLTLAKNYIMALTNVICDMRGDEKPY 95

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192581|gb|EFN75769.1| Class B basic helix-loop-helix protein 8 [Harpegnathos saltator]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 87/115 (75%)

Query: 18  GGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIE 77
           G   + RRRK  ++ARE+N+RRLESNERERMRMHSLNDAF+ LREVIPHVK ER+LSKIE
Sbjct: 65  GAPPTTRRRKSGISARERNLRRLESNERERMRMHSLNDAFEQLREVIPHVKMERKLSKIE 124

Query: 78  TLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEES 132
           TLTLAKNYIMALTNVIC+MRGE+ PY   D   G  +  + G   L+     +ES
Sbjct: 125 TLTLAKNYIMALTNVICEMRGEERPYTFVDGECGSSSGDSTGQLELSGGEQPDES 179

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023537|gb|EGI63773.1| Class A basic helix-loop-helix protein 15 [Acromyrmex echinatior]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 85/109 (77%)

Query: 24  RRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAK 83
           RRRK  ++ARE+N+RRLESNERERMRMHSLNDAF+ LREVIPHVK ER+LSKIETLTLAK
Sbjct: 72  RRRKSGISARERNLRRLESNERERMRMHSLNDAFEQLREVIPHVKMERKLSKIETLTLAK 131

Query: 84  NYIMALTNVICDMRGEDSPYVAPDSSTGLITSGTQGDTALTAHAHTEES 132
           NYI+ALTNVIC+MRGE+ PY   D   G  +  + G   L+     +ES
Sbjct: 132 NYIIALTNVICEMRGEEQPYTFVDGECGSSSGDSTGQLELSGGEQPDES 180

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537960|ref|XP_001608175.1| PREDICTED: neurogenin-3 [Nasonia vitripennis]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 79/91 (86%)

Query: 17  RGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKI 76
           RGG  + RRRK  ++ARE+ +RRLESNERERMRMHSLNDAF+ LREVIPHVK ER+LSKI
Sbjct: 65  RGGPPTTRRRKSGISARERTLRRLESNERERMRMHSLNDAFEQLREVIPHVKMERKLSKI 124

Query: 77  ETLTLAKNYIMALTNVICDMRGEDSPYVAPD 107
           ETLTLAKNYIMALTNVIC+MRGE+ PY   D
Sbjct: 125 ETLTLAKNYIMALTNVICEMRGEEQPYTFVD 155

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0023091	390	dimm "dimmed" [Drosophila mela	0.693	0.243	0.639	1.5e-26
ZFIN|ZDB-GENE-070803-3	184	bhlha15 "basic helix-loop-heli	0.481	0.358	0.742	9e-22
UNIPROTKB|E1C082	166	BHLHA15 "Uncharacterized prote	0.525	0.433	0.638	3.5e-20
MGI|MGI:891976	197	Bhlha15 "basic helix-loop-heli	0.576	0.401	0.617	2.5e-19
RGD|3091	197	Bhlha15 "basic helix-loop-heli	0.576	0.401	0.617	2.5e-19
UNIPROTKB|F1RFL0	184	BHLHA15 "Uncharacterized prote	0.496	0.369	0.685	8.3e-19
UNIPROTKB|G5E6I7	187	LOC100848337 "Uncharacterized	0.467	0.342	0.707	1.1e-18
UNIPROTKB|E2R952	187	BHLHA15 "Uncharacterized prote	0.430	0.315	0.745	1.1e-18
UNIPROTKB|Q7RTS1	189	BHLHA15 "Class A basic helix-l	0.474	0.343	0.692	1.4e-18
ZFIN|ZDB-GENE-990415-172	350	neurod "neurogenic differentia	0.540	0.211	0.513	9.1e-14

FB|FBgn0023091 dimm "dimmed" [Drosophila melanogaster (taxid:7227)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 62/97 (63%), Positives = 76/97 (78%)

Query:    27 KPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYI 86
             K  LNA+E+NMRRLESNERERMRMHSLNDAFQSLREVIPHV+ ERRLSKIETLTLAKNYI
Sbjct:   146 KGALNAKERNMRRLESNERERMRMHSLNDAFQSLREVIPHVEMERRLSKIETLTLAKNYI 205

Query:    87 MALTNVICDMRGEDSPYVAPDSST--GLITSGTQGDT 121
             + LT++I   R E++  +  +S    G++ S    ++
Sbjct:   206 INLTHIILSKRNEEAAALELNSGAVGGVLLSNLSSES 242

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0046887 "positive regulation of hormone secretion" evidence=IMP

GO:0002793 "positive regulation of peptide secretion" evidence=IMP

ZFIN|ZDB-GENE-070803-3 bhlha15 "basic helix-loop-helix family, member a15" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 49/66 (74%), Positives = 57/66 (86%)

Query:    31 NAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALT 90
             N +E+N+RRLESNERER RMH LN+AFQ+LRE IPHVK E++LSKIETLTLAKNYI ALT
Sbjct:    70 NTKERNVRRLESNERERQRMHKLNNAFQALREAIPHVKTEKKLSKIETLTLAKNYIKALT 129

Query:    91 NVICDM 96
              +I  M
Sbjct:   130 TIILGM 135

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0031017 "exocrine pancreas development" evidence=IMP;IDA

UNIPROTKB|E1C082 BHLHA15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 46/72 (63%), Positives = 60/72 (83%)

Query:    31 NAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALT 90
             +++++ +RRLESNERER RMH LN+AFQ+LREVIPHV+ E +LSKIETLTLAKNYI +LT
Sbjct:    60 SSKDRLLRRLESNERERQRMHKLNNAFQALREVIPHVRAENKLSKIETLTLAKNYIKSLT 119

Query:    91 NVICDMRGEDSP 102
             ++I +M     P
Sbjct:   120 SIILNMSNGHFP 131

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006851 "mitochondrial calcium ion transport" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048312 "intracellular distribution of mitochondria" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

MGI|MGI:891976 Bhlha15 "basic helix-loop-helix family, member a15" [Mus musculus (taxid:10090)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 50/81 (61%), Positives = 61/81 (75%)

Query:    33 REKNM-RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN 91
             RE ++ RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI +LT 
Sbjct:    67 RENSVQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTA 126

Query:    92 VICDMRGEDSPYV-APDSSTG 111
              I  M     P + AP  + G
Sbjct:   127 TILTMSSSRLPGLEAPGPAPG 147

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006851 "mitochondrial calcium ion transport" evidence=IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=IMP

GO:0019722 "calcium-mediated signaling" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048312 "intracellular distribution of mitochondria" evidence=IMP

GO:0048469 "cell maturation" evidence=IMP

RGD|3091 Bhlha15 "basic helix-loop-helix family, member a15" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 50/81 (61%), Positives = 61/81 (75%)

Query:    33 REKNM-RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN 91
             RE ++ RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI +LT 
Sbjct:    67 RENSVQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTA 126

Query:    92 VICDMRGEDSPYV-APDSSTG 111
              I  M     P + AP  + G
Sbjct:   127 TILTMSSSRLPGLEAPGPAPG 147

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006851 "mitochondrial calcium ion transport" evidence=IEA;ISO

GO:0007030 "Golgi organization" evidence=IEA;ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISO

GO:0007267 "cell-cell signaling" evidence=IEA;ISO

GO:0019722 "calcium-mediated signaling" evidence=IEA;ISO

GO:0042593 "glucose homeostasis" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048312 "intracellular distribution of mitochondria" evidence=IEA;ISO

GO:0048469 "cell maturation" evidence=IEA;ISO

UNIPROTKB|F1RFL0 BHLHA15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 48/70 (68%), Positives = 57/70 (81%)

Query:    28 PVLNAREKNM-RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYI 86
             PV   RE ++ RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI
Sbjct:    62 PV-GRRESSVQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYI 120

Query:    87 MALTNVICDM 96
              +LT  I  M
Sbjct:   121 KSLTATILTM 130

GO:0048469 "cell maturation" evidence=IEA

GO:0048312 "intracellular distribution of mitochondria" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0006851 "mitochondrial calcium ion transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|G5E6I7 LOC100848337 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/65 (70%), Positives = 55/65 (84%)

Query:    33 REKNM-RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN 91
             RE ++ RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI +LT 
Sbjct:    67 RESSVQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTA 126

Query:    92 VICDM 96
              I  M
Sbjct:   127 TILTM 131

GO:0048469 "cell maturation" evidence=IEA

GO:0048312 "intracellular distribution of mitochondria" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0006851 "mitochondrial calcium ion transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2R952 BHLHA15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 44/59 (74%), Positives = 52/59 (88%)

Query:    38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDM 96
             RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI +LT+ I  M
Sbjct:    75 RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTSTILTM 133

GO:0048469 "cell maturation" evidence=IEA

GO:0048312 "intracellular distribution of mitochondria" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0006851 "mitochondrial calcium ion transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q7RTS1 BHLHA15 "Class A basic helix-loop-helix protein 15" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 45/65 (69%), Positives = 52/65 (80%)

Query:    38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97
             RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI +LT  I  M 
Sbjct:    76 RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMS 135

Query:    98 GEDSP 102
                 P
Sbjct:   136 SSRLP 140

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006851 "mitochondrial calcium ion transport" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048312 "intracellular distribution of mitochondria" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-990415-172 neurod "neurogenic differentiation" [Danio rerio (taxid:7955)]

 Score = 183 (69.5 bits), Expect = 9.1e-14, P = 9.1e-14
 Identities = 39/76 (51%), Positives = 53/76 (69%)

Query:    27 KPVLNAREKN--MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKN 84
             K +  AR +   MRR+++N RER RMH LNDA +SLR+V+P   K ++LSKIETL LAKN
Sbjct:    84 KKMTKARMQRFKMRRMKANARERNRMHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKN 143

Query:    85 YIMALTNVICDMRGED 100
             YI AL+ ++   +  D
Sbjct:   144 YIWALSEILRSGKSPD 159

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048923 "posterior lateral line neuromast hair cell differentiation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QYC3	BHA15_MOUSE	No assigned EC number	0.6486	0.5036	0.3502	yes	N/A
P70562	BHA15_RAT	No assigned EC number	0.6486	0.5036	0.3502	yes	N/A
Q7RTS1	BHA15_HUMAN	No assigned EC number	0.6329	0.5401	0.3915	yes	N/A
B6VQA1	DIMM_DROME	No assigned EC number	0.7948	0.5693	0.2	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	1e-15
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	3e-15
smart00353	53	smart00353, HLH, helix loop helix domain	7e-15

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 65.6 bits (161), Expect = 1e-15
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALT 90
          RR   NERER R   +NDAF+ LRE++P     ++LSK E L LA  YI  L 
Sbjct: 1  RRKAHNERERRRRDRINDAFEELRELLPTPPN-KKLSKAEILRLAIEYIKHLQ 52

Length = 52

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 64.9 bits (159), Expect = 3e-15
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
          +  RR   N RER R   +NDAF  LR ++P +   ++LSK E L  A +YI +L  ++
Sbjct: 1  RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 63.8 bits (156), Expect = 7e-15
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 43 NERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNV 92
          N RER R   +N+AF  LR ++P + K ++LSK E L LA  YI +L   
Sbjct: 1  NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEE 50

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG4029|consensus	228		99.75
KOG3960|consensus	284		99.75
KOG3898|consensus	254		99.68
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.63
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.56
smart00353	53	HLH helix loop helix domain.	99.49
KOG4447|consensus	173		99.47
KOG4395|consensus	285		99.44
KOG0561|consensus	373		99.41
KOG3910|consensus	632		99.04
KOG1318|consensus	411		98.87
KOG1319|consensus	229		98.84
KOG2483|consensus	232		98.21
KOG3561|consensus	803		97.88
KOG4304|consensus	250		97.77
KOG2588|consensus	953		97.52
KOG4447|consensus	173		96.98
PLN03217	93	transcription factor ATBS1; Provisional	96.55
KOG3558|consensus	768		92.74
KOG3560|consensus	712		90.92
PLN02705	681	beta-amylase	88.99

>KOG4029|consensus

Probab=99.75  E-value=2.2e-18  Score=137.68  Aligned_cols=64  Identities=39%  Similarity=0.619  Sum_probs=59.5

Q ss_pred             HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118         35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKK-ERRLSKIETLTLAKNYIMALTNVICDMRG   98 (137)
Q Consensus        35 ~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~-~kklSKi~tLr~Ai~YI~~L~~~L~~~~~   98 (137)
                      ...+|.++|+|||+||+.||.+|..||.+||+.+. ++|||||+||+.||.||.+|+++|.....
T Consensus       106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~  170 (228)
T KOG4029|consen  106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA  170 (228)
T ss_pred             hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence            44578899999999999999999999999999998 99999999999999999999999987653

>KOG3960|consensus

Probab=99.75  E-value=1e-17  Score=136.42  Aligned_cols=63  Identities=30%  Similarity=0.480  Sum_probs=56.8

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDS  101 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~e~~  101 (137)
                      ||++|.+|||+|+++||+||+.|++..-.. ++++|.||||||.||+||..||.||.+.....+
T Consensus       118 RRKAATMRERRRLkKVNEAFE~LKRrT~~N-PNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  118 RRKAATMRERRRLKKVNEAFETLKRRTSSN-PNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            899999999999999999999999988644 467999999999999999999999998765544

>KOG3898|consensus

Probab=99.68  E-value=2.3e-17  Score=134.61  Aligned_cols=65  Identities=55%  Similarity=0.770  Sum_probs=60.2

Q ss_pred             HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118         34 EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG   98 (137)
Q Consensus        34 ~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~   98 (137)
                      .++.||..+|.|||+|||+||+||+.||.+||+++.+.||+||+||++|-+||+.|++++.....
T Consensus        68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~  132 (254)
T KOG3898|consen   68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIA  132 (254)
T ss_pred             hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCC
Confidence            67789999999999999999999999999999989999999999999999999999998865443

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.63  E-value=9.5e-16  Score=97.43  Aligned_cols=53  Identities=45%  Similarity=0.681  Sum_probs=49.4

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCC--CCCCCCCHHHHHHHHHHHHHHHH
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHV--KKERRLSKIETLTLAKNYIMALT   90 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~--~~~kklSKi~tLr~Ai~YI~~L~   90 (137)
                      +|..||.+||.|+..||.+|+.|+.+||..  ....+++|++||..||+||.+||
T Consensus         1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            588999999999999999999999999985  36679999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.56  E-value=1.9e-14  Score=91.72  Aligned_cols=56  Identities=41%  Similarity=0.643  Sum_probs=52.6

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI   93 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L   93 (137)
                      +|..||..||.|+..||.+|+.|+.+||......+++|+.||..|++||..|+..+
T Consensus         4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            67889999999999999999999999998766789999999999999999999865

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.49  E-value=1.4e-13  Score=86.20  Aligned_cols=52  Identities=40%  Similarity=0.662  Sum_probs=48.1

Q ss_pred             hHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118         43 NERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVIC   94 (137)
Q Consensus        43 n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~   94 (137)
                      |++||.|+..||.+|+.|+.+||......+++|+.||..|++||..|+..++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999987667899999999999999999998764

>KOG4447|consensus

Probab=99.47  E-value=4.5e-14  Score=108.01  Aligned_cols=65  Identities=43%  Similarity=0.611  Sum_probs=60.1

Q ss_pred             chHHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11118         31 NAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDM   96 (137)
Q Consensus        31 s~~~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~   96 (137)
                      .-.+.+.+|.-||.|||+|-+.||+||..||..+|++|.+ |||||.||++|..||.+|..+|..+
T Consensus        71 ~~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsd-klSkiqtLklA~ryidfl~~vl~s~  135 (173)
T KOG4447|consen   71 SLDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSD  135 (173)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCcc-ccccccchhhcccCCchhhhccccc
Confidence            3466777899999999999999999999999999999876 9999999999999999999999765

>KOG4395|consensus

Probab=99.44  E-value=1.7e-13  Score=111.90  Aligned_cols=64  Identities=44%  Similarity=0.626  Sum_probs=59.3

Q ss_pred             HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         34 EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        34 ~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      ....||.++|+|||+||..||.||+.||.+||....+++|||.+||++|-.||..|..+|....
T Consensus       170 v~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~  233 (285)
T KOG4395|consen  170 VNSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPM  233 (285)
T ss_pred             HHHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCcc
Confidence            4556889999999999999999999999999999999999999999999999999999996544

>KOG0561|consensus

Probab=99.41  E-value=6.6e-13  Score=110.98  Aligned_cols=83  Identities=33%  Similarity=0.379  Sum_probs=68.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy11118          9 SGGGAGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMA   88 (137)
Q Consensus         9 ~~g~g~~g~~~~~~~k~~k~~~s~~~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~   88 (137)
                      +.+||+.+.+...-..-..+.....+++.||..||--||+||+.||.+|..||.+||... +.||||..||+...+||..
T Consensus        31 s~iGg~~~lan~s~~plspkt~~D~erRmRReIANsNERRRMQSINAGFqsLr~LlPr~e-GEKLSKAAILQQTa~yI~~  109 (373)
T KOG0561|consen   31 STIGGAPMLANRSLAPLSPKTSLDPERRMRREIANSNERRRMQSINAGFQSLRALLPRKE-GEKLSKAAILQQTADYIHQ  109 (373)
T ss_pred             cccCCcccccccccCCCCCCcccCHHHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCccc-chhhHHHHHHHHHHHHHHH
Confidence            555666666655555555666667788889999999999999999999999999999764 4599999999999999999


Q ss_pred             HHHH
Q psy11118         89 LTNV   92 (137)
Q Consensus        89 L~~~   92 (137)
                      |...
T Consensus       110 Le~~  113 (373)
T KOG0561|consen  110 LEGH  113 (373)
T ss_pred             HHhc
Confidence            8753

>KOG3910|consensus

Probab=99.04  E-value=2.5e-10  Score=100.63  Aligned_cols=63  Identities=30%  Similarity=0.536  Sum_probs=55.9

Q ss_pred             HHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11118         33 REKNMRRLESNERERMRMHSLNDAFQSLREVI-PHVKKERRLSKIETLTLAKNYIMALTNVICD   95 (137)
Q Consensus        33 ~~~~~rR~~~n~rER~R~~~in~af~~Lr~~l-P~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~   95 (137)
                      ..++.||++.|+|||.|+++||+||.+|-++. -++..+|..+|+-||..|+.-|..|++.+++
T Consensus       521 eREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  521 EREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             hHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            44566899999999999999999999996655 4466889999999999999999999999986

>KOG1318|consensus

Probab=98.87  E-value=1.2e-08  Score=88.50  Aligned_cols=65  Identities=25%  Similarity=0.369  Sum_probs=56.0

Q ss_pred             chHHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11118         31 NAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVK-KERRLSKIETLTLAKNYIMALTNVICD   95 (137)
Q Consensus        31 s~~~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~-~~kklSKi~tLr~Ai~YI~~L~~~L~~   95 (137)
                      .....+.||..||+-||+|+.+||+.+.+|..+||.+. .+-++.|-.||..+++||..|++.++.
T Consensus       226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~  291 (411)
T KOG1318|consen  226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR  291 (411)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence            33445556778999999999999999999999999863 566888999999999999999998873

>KOG1319|consensus

Probab=98.84  E-value=1e-08  Score=81.17  Aligned_cols=61  Identities=23%  Similarity=0.363  Sum_probs=52.6

Q ss_pred             HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118         34 EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKK----ERRLSKIETLTLAKNYIMALTNVIC   94 (137)
Q Consensus        34 ~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~----~kklSKi~tLr~Ai~YI~~L~~~L~   94 (137)
                      .+..||.+|..-||+|+.-||.+|+.|+.+||.+..    +.||||..||..+|+||.+|..-..
T Consensus        58 yk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~  122 (229)
T KOG1319|consen   58 YKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKK  122 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344467789999999999999999999999998753    3599999999999999999976443

>KOG2483|consensus

Probab=98.21  E-value=4.1e-06  Score=68.12  Aligned_cols=57  Identities=28%  Similarity=0.396  Sum_probs=50.4

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVIC   94 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~   94 (137)
                      .|..||+-||+|+..|.++|+.|+..||..+.+++-.-+.||+.|..||..|+....
T Consensus        59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~  115 (232)
T KOG2483|consen   59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA  115 (232)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence            688999999999999999999999999987766555589999999999999876544

>KOG3561|consensus

Probab=97.88  E-value=3.1e-05  Score=72.17  Aligned_cols=55  Identities=22%  Similarity=0.361  Sum_probs=50.1

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVK-KERRLSKIETLTLAKNYIMALTNV   92 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~-~~kklSKi~tLr~Ai~YI~~L~~~   92 (137)
                      .|..+|.-||+|+.++|.-+++|-.+||... -.+|+-|..|||+||..|+.+..+
T Consensus        20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            4888999999999999999999999999854 457999999999999999988874

>KOG4304|consensus

Probab=97.77  E-value=3.6e-05  Score=63.11  Aligned_cols=59  Identities=24%  Similarity=0.414  Sum_probs=50.2

Q ss_pred             HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHH
Q psy11118         34 EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKE-----RRLSKIETLTLAKNYIMALTNV   92 (137)
Q Consensus        34 ~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~-----kklSKi~tLr~Ai~YI~~L~~~   92 (137)
                      ....|+..+=.-||+|+.-||..++.||.+||.....     .||-|.+||.++++|...|+..
T Consensus        28 ~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~   91 (250)
T KOG4304|consen   28 TRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS   91 (250)
T ss_pred             hHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            3444667788999999999999999999999985322     6999999999999999999883

>KOG2588|consensus

Probab=97.52  E-value=4.8e-05  Score=71.63  Aligned_cols=59  Identities=25%  Similarity=0.363  Sum_probs=52.5

Q ss_pred             HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        37 ~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      .+|.+||..|++=+-.||+-+.+||+.||..+.  ||.|-++|+.||+||.+|+......+
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~a--Kl~kSavLr~ai~~i~dl~~~nq~lk  333 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEA--KLNKSAVLRKAIDYIEDLQGYNQKLK  333 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHh--hhhhhhhHHHHHHHHHHhhccccccc
Confidence            479999999999999999999999999997544  99999999999999999987665444

>KOG4447|consensus

Probab=96.98  E-value=0.00037  Score=53.87  Aligned_cols=55  Identities=24%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             HHhHhhHH-HHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11118         38 RRLESNER-ERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI   93 (137)
Q Consensus        38 rR~~~n~r-ER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L   93 (137)
                      .+.-+|.+ ||.|.+.+|++|.-|+..+|-.|.+ +.+++.+|+.+..||..|.++-
T Consensus        21 ~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~-gk~~~ktlr~~~~~~~~~dE~q   76 (173)
T KOG4447|consen   21 EEECDRQRKERGRKRRLSDASTLLGKLEPGSPAD-GKRGKKTLRIGTDSIQSLDELQ   76 (173)
T ss_pred             hhhhhhhHHHHhHHhhhhhhhhhccccCCCCCCc-ccccccccccCCCchhhHHHHH
Confidence            34455666 9999999999999999999998866 8899999999999999988753

>PLN03217 transcription factor ATBS1; Provisional

Probab=96.55  E-value=0.0063  Score=42.87  Aligned_cols=49  Identities=22%  Similarity=0.413  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHhhCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118         50 MHSLNDAFQSLREVIPHVK---KERRLSKIETLTLAKNYIMALTNVICDMRG   98 (137)
Q Consensus        50 ~~~in~af~~Lr~~lP~~~---~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~   98 (137)
                      -.+||+-+.+|+..||...   ...+.|--.+|+.+|+||..|...++++-.
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSe   70 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSE   70 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999853   245888889999999999999998876643

>KOG3558|consensus

Probab=92.74  E-value=0.2  Score=46.71  Aligned_cols=50  Identities=22%  Similarity=0.397  Sum_probs=39.6

Q ss_pred             hHHHHHhHHHHHHHHHHHHhhCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118         43 NERERMRMHSLNDAFQSLREVIPHVKK--ERRLSKIETLTLAKNYIMALTNVIC   94 (137)
Q Consensus        43 n~rER~R~~~in~af~~Lr~~lP~~~~--~kklSKi~tLr~Ai~YI~~L~~~L~   94 (137)
                      ...-|.|+.+=|+-|.+|..+|| +|.  .-.|-|+.|+|++|.|.+ |.+++.
T Consensus        51 RdAARsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLR-lrk~a~  102 (768)
T KOG3558|consen   51 RDAARSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLR-LRKFAG  102 (768)
T ss_pred             hhhhhhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHH-HHHHhh
Confidence            33346788999999999999999 664  468999999999999865 444444

>KOG3560|consensus

Probab=90.92  E-value=0.15  Score=46.56  Aligned_cols=52  Identities=19%  Similarity=0.353  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHH---HHHHHHHhhcCCCC
Q psy11118         50 MHSLNDAFQSLREVIPHVKK-ERRLSKIETLTLAKNYIM---ALTNVICDMRGEDS  101 (137)
Q Consensus        50 ~~~in~af~~Lr~~lP~~~~-~kklSKi~tLr~Ai~YI~---~L~~~L~~~~~e~~  101 (137)
                      +.-||..++.|..+||+.+. --||-|+.+||+++.|+.   +.|-+|.+...+..
T Consensus        37 RdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~~~~~   92 (712)
T KOG3560|consen   37 RDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSSRQPA   92 (712)
T ss_pred             HHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccC
Confidence            34589999999999997432 259999999999999986   56667766554443

>PLN02705 beta-amylase

Probab=88.99  E-value=2.7  Score=39.11  Aligned_cols=28  Identities=21%  Similarity=0.198  Sum_probs=22.5

Q ss_pred             HhHhhHHHHHhHHHHHHHHHHHHhhCCC
Q psy11118         39 RLESNERERMRMHSLNDAFQSLREVIPH   66 (137)
Q Consensus        39 R~~~n~rER~R~~~in~af~~Lr~~lP~   66 (137)
                      |..-..|||+|+.---.-|..||++=-+
T Consensus        85 ~e~~~~rer~rrai~~ki~aglr~~g~~  112 (681)
T PLN02705         85 KERTKLRERHRRAITSRMLAGLRQYGNF  112 (681)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence            3344678999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
2ql2_B	60	Crystal Structure Of The Basic-Helix-Loop-Helix Dom		1e-12

>pdb|2QL2|B Chain B, Crystal Structure Of The Basic-Helix-Loop-Helix Domains Of The Heterodimer E47NEUROD1 BOUND TO DNA Length = 60

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
          RR+++N RER RMH LN A  +LR+V+P   K ++LSKIETL LAKNYI AL+ ++
Sbjct: 2  RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	3e-26
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	4e-19
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	1e-15
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	2e-11
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	7e-07
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	9e-07
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	1e-06
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-06
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	4e-04

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60

 Score = 92.7 bits (231), Expect = 3e-26
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
          RR+++N RER RMH LN A  +LR+V+P   K ++LSKIETL LAKNYI AL+ ++
Sbjct: 2  RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68

 Score = 74.3 bits (183), Expect = 4e-19
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
          RR  +  RER R+  +N+AF++L+         +RL K+E L  A  YI  L  ++
Sbjct: 12 RRKAATMRERRRLSKVNEAFETLKRSTSS-NPNQRLPKVEILRNAIRYIEGLQALL 66

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76

 Score = 66.1 bits (161), Expect = 1e-15
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 38 RRLESNERERMRMHSLNDAFQSL-REVIPHVKKERRLSKIETLTLAKNYIMAL 89
          +R   N  ER R   +N+AF+ L R    H+K ++  +K+  L  A   I+ L
Sbjct: 5  KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGL 57

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 55.0 bits (133), Expect = 2e-11
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 34 EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
            N++R   N  ER R + L  +F +LR+ IP ++   +  K+  L  A  YI+++    
Sbjct: 2  HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEE 61

Query: 94 CDMRGE 99
            +  E
Sbjct: 62 QKLISE 67

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 43.1 bits (102), Expect = 7e-07
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 33 REKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNV 92
               +R   N  ER R   + D+F SLR+ +P ++ E + S+ + L  A  YI  +   
Sbjct: 7  ESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRK 65

Query: 93 ICDMRGE 99
              + +
Sbjct: 66 NHTHQQD 72

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 42.9 bits (101), Expect = 9e-07
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 43 NERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGE 99
          NE E+ R   L  + + L+ ++P      R + +  LT AK +I  L +       +
Sbjct: 6  NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97
          +R   N  ER R   + D+F SLR+ +P ++ E+  S+ + L  A  YI  +       +
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQ 60

Query: 98 GE 99
           +
Sbjct: 61 QD 62

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 33 REKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNV 92
          + +  +R   N  E+    S+ND    L++++   +   +L+K   L  A +YI  L + 
Sbjct: 1  QSRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA--KLNKSAVLRKAIDYIRFLQHS 58

Query: 93 ICDMRGE 99
             ++ E
Sbjct: 59 NQKLKQE 65

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 68

 Score = 35.9 bits (82), Expect = 4e-04
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 38 RRLESNERERMRM-HSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMAL 89
                  E + +   +N  +  LRE++P V +  +LS++E L    +YI+ L
Sbjct: 13 GGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDL 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.92
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.9
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	99.86
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	99.86
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.77
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.72
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.69
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.67
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.64
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.55
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.5
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.45
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.43
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.39
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.36
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.86
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.62
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.19
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	94.95

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.92  E-value=1.6e-25  Score=145.99  Aligned_cols=58  Identities=55%  Similarity=0.849  Sum_probs=55.9

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICD   95 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~   95 (137)
                      +|.+||+|||+||++||+||+.||.+||+++.++|||||+||+.||+||.+|+++|++
T Consensus         2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~   59 (60)
T 2ql2_B            2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS   59 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999999999999999999999999999999999999999864

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.90  E-value=2.7e-24  Score=143.38  Aligned_cols=58  Identities=33%  Similarity=0.488  Sum_probs=54.4

Q ss_pred             HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118         36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVIC   94 (137)
Q Consensus        36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~   94 (137)
                      ..+|.+||+|||+||+.||+||+.||.+||..| ++|||||+||+.||+||.+|+++|+
T Consensus        10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            458999999999999999999999999999866 7899999999999999999999885

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=99.86  E-value=3.2e-22  Score=141.45  Aligned_cols=73  Identities=19%  Similarity=0.373  Sum_probs=52.6

Q ss_pred             CCCchHHHHHHHhHh-hHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11118         28 PVLNAREKNMRRLES-NERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGED  100 (137)
Q Consensus        28 ~~~s~~~~~~rR~~~-n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~e~  100 (137)
                      ...++......|..+ ..+||.||++||+||+.||++||++|.++||||||||++||+||.+|+++|++.....
T Consensus        14 ~~lseqs~~i~R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~   87 (97)
T 4aya_A           14 NSLSDHSLGISRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPS   87 (97)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred             hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            355565555555544 4666899999999999999999999999999999999999999999999998865443

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.86  E-value=5.1e-23  Score=137.08  Aligned_cols=50  Identities=28%  Similarity=0.508  Sum_probs=48.4

Q ss_pred             hhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy11118         42 SNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN   91 (137)
Q Consensus        42 ~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~   91 (137)
                      +|+|||+||++||+||+.||++||++|.++||||||||+.||+||.+||.
T Consensus        18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            58999999999999999999999999999999999999999999999985

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.77  E-value=2.7e-19  Score=121.42  Aligned_cols=61  Identities=25%  Similarity=0.365  Sum_probs=51.6

Q ss_pred             HHHhHhhHHHHHhHHHHHHHHHHHHhhCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         37 MRRLESNERERMRMHSLNDAFQSLREVIPH-VKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        37 ~rR~~~n~rER~R~~~in~af~~Lr~~lP~-~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      .+|.+||++||+|+..||++|+.|+.+||. .+.++.+||++||+.||+||..|++.|.+..
T Consensus         4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A            4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999994 5667777999999999999999999998753

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.72  E-value=2.1e-17  Score=112.31  Aligned_cols=63  Identities=25%  Similarity=0.401  Sum_probs=56.6

Q ss_pred             HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118         35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG   98 (137)
Q Consensus        35 ~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~   98 (137)
                      ...+|..||++||+|+..||.+|+.|+.+||.++. .|+||++||+.||+||.+|+..+..+..
T Consensus         9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~-~k~sK~~iL~~Ai~YI~~L~~~~~~L~~   71 (80)
T 1hlo_A            9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKNHTHQQ   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTT-SCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCC-CCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34589999999999999999999999999998764 4899999999999999999998887653

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.69  E-value=8.2e-17  Score=111.65  Aligned_cols=60  Identities=28%  Similarity=0.448  Sum_probs=55.5

Q ss_pred             HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11118         36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICD   95 (137)
Q Consensus        36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~   95 (137)
                      ..+|..||+.||+|+..||++|+.|+.+||.++.+.|+||+.||+.||+||..|+.....
T Consensus         4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~   63 (88)
T 1nkp_A            4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK   63 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            347999999999999999999999999999988788999999999999999999987554

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.67  E-value=1.1e-16  Score=109.09  Aligned_cols=59  Identities=27%  Similarity=0.451  Sum_probs=53.3

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      +|..||.+||+|+..||++|+.|+.+||.++ +.|+||++||+.||+||.+|+..+..+.
T Consensus         2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~   60 (83)
T 1nkp_B            2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQ   60 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999866 4589999999999999999997766543

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.64  E-value=6e-16  Score=105.67  Aligned_cols=59  Identities=25%  Similarity=0.241  Sum_probs=54.7

Q ss_pred             HhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         39 RLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        39 R~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      |..||+.||+|+..||.+|+.|+..||.++.+.|+||+.||+.|++||..|+.....+.
T Consensus         2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~   60 (80)
T 1nlw_A            2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV   60 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999888999999999999999999998765443

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.55  E-value=1.8e-14  Score=98.40  Aligned_cols=61  Identities=25%  Similarity=0.319  Sum_probs=55.1

Q ss_pred             HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118         36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG   98 (137)
Q Consensus        36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~   98 (137)
                      ..+|..||..||+|+..||++|..|+.+||..  +.|++|+.||..||+||.+|+..+..+..
T Consensus         4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~   64 (82)
T 1am9_A            4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKLKQ   64 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999963  56999999999999999999998876654

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.50  E-value=3.8e-15  Score=97.27  Aligned_cols=54  Identities=35%  Similarity=0.443  Sum_probs=49.5

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCC---CCCCHHHHHHHHHHHHHHHHH
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKE---RRLSKIETLTLAKNYIMALTN   91 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~---kklSKi~tLr~Ai~YI~~L~~   91 (137)
                      +|..||..||+|+..||++|+.|+.+||.+...   .+++|+.||..||+||.+|+.
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~   61 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            577899999999999999999999999987643   489999999999999999986

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.45  E-value=4.2e-13  Score=89.92  Aligned_cols=60  Identities=17%  Similarity=0.349  Sum_probs=54.1

Q ss_pred             HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      ..+|..+|..||+|+..||..|..|+.+||.  ...|+.|..||+.||+||..|+..+..+.
T Consensus         6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4578899999999999999999999999994  44699999999999999999999887653

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.43  E-value=3.9e-14  Score=92.66  Aligned_cols=56  Identities=29%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVKK----ERRLSKIETLTLAKNYIMALTNVI   93 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~----~kklSKi~tLr~Ai~YI~~L~~~L   93 (137)
                      +|..|+.-||.|+..||.+|+.|+.+||....    ..++||.+||.+||+||.+|++.+
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            57889999999999999999999999997532    479999999999999999998743

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.39  E-value=7.1e-13  Score=96.17  Aligned_cols=61  Identities=25%  Similarity=0.316  Sum_probs=49.9

Q ss_pred             HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         37 MRRLESNERERMRMHSLNDAFQSLREVIPHVK-KERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        37 ~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~-~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      .+|..||..||+|+..||+.|..|+.+||.+. .+.|++|..||..||+||.+|+..+..+.
T Consensus        26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~   87 (118)
T 4ati_A           26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK   87 (118)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999864 35799999999999999999998777665

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.36  E-value=6.1e-13  Score=89.44  Aligned_cols=57  Identities=21%  Similarity=0.332  Sum_probs=51.0

Q ss_pred             HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHH
Q psy11118         35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHV-KKERRLSKIETLTLAKNYIMALTN   91 (137)
Q Consensus        35 ~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~-~~~kklSKi~tLr~Ai~YI~~L~~   91 (137)
                      ...+|..|+..||+|+..||.+|+.|+.+||.+ ....||.|..||++||+||..|+.
T Consensus         6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            445788999999999999999999999999964 345799999999999999999975

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.86  E-value=3.2e-09  Score=87.38  Aligned_cols=57  Identities=18%  Similarity=0.363  Sum_probs=43.7

Q ss_pred             HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11118         35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI   93 (137)
Q Consensus        35 ~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L   93 (137)
                      ...+|..||..||+|+..||..|..|+.+||  ....||.|..||++||.||..|+.+-
T Consensus         9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A            9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            3457888999999999999999999999999  34569999999999999999999854

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.62  E-value=3e-08  Score=82.60  Aligned_cols=56  Identities=21%  Similarity=0.357  Sum_probs=49.6

Q ss_pred             HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q psy11118         36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVK-KERRLSKIETLTLAKNYIMALTN   91 (137)
Q Consensus        36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~-~~kklSKi~tLr~Ai~YI~~L~~   91 (137)
                      ..+|..||..||+|+..||..|.+|+.+||... ...||.|..||++||.||..|+.
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence            346888999999999999999999999999643 45699999999999999999873

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.19  E-value=4.2e-06  Score=57.34  Aligned_cols=47  Identities=23%  Similarity=0.310  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11118         50 MHSLNDAFQSLREVIPHV-KKERRLSKIETLTLAKNYIMALTNVICDM   96 (137)
Q Consensus        50 ~~~in~af~~Lr~~lP~~-~~~kklSKi~tLr~Ai~YI~~L~~~L~~~   96 (137)
                      +-+||+.|.+|...||.. ..+-+.+|-.||+.|++||.+|++....+
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~   51 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA   51 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999974 35679999999999999999998855543

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=94.95  E-value=0.05  Score=40.20  Aligned_cols=39  Identities=33%  Similarity=0.431  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHHH
Q psy11118         52 SLNDAFQSLREVIPHVKK-ERRLSKIETLTLAKNYIMALT   90 (137)
Q Consensus        52 ~in~af~~Lr~~lP~~~~-~kklSKi~tLr~Ai~YI~~L~   90 (137)
                      .|+-+|+.|.+.||-+|. ..+|.|--||+.|.++...|-
T Consensus        95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~  134 (138)
T 3muj_A           95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY  134 (138)
T ss_dssp             CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence            578899999999999874 379999999999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	2e-13
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	3e-12
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	3e-12
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	4e-11
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	6e-11
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	3e-10
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	1e-07

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 2e-13
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVIC 94
           N++R   N  ER R + L  +F +LR+ IP ++   +  K+  L  A  YI+++     
Sbjct: 3  MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62

Query: 95 DMRGE 99
           +  E
Sbjct: 63 KLISE 67

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 3e-12
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 39 RLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG 98
          R   NE E+ R   L  + + L+ ++P      R + +  LT AK +I  L +       
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61

Query: 99 E 99
          +
Sbjct: 62 Q 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (134), Expect = 3e-12
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICD 95
          RR  +  RER R+  +N+AF++L+         +RL K+E L  A  YI  L  ++ D
Sbjct: 12 RRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYIEGLQALLRD 68

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 4e-11
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97
          +R   N  ER R   + D+F SLR+ +P + +  + S+ + L  A  YI  +       +
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSVPSL-QGEKASRAQILDKATEYIQYMRRKNHTHQ 60

Query: 98 GE 99
           +
Sbjct: 61 QD 62

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 6e-11
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKE---RRLSKIETLTLAKNYIMAL 89
          RR + NE ER R   +N+    L ++IP    E      SK   L+ A +YI  L
Sbjct: 5  RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (120), Expect = 3e-10
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKE----RRLSKIETLTLAKNYIMAL 89
          M+R      E+ R + L  A   L  +IP   K+       SK  T+  A  YI  L
Sbjct: 1  MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHL 57

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 33 REKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNV 92
          + +  +R   N  E+    S+ND    L++++   +   +L+K   L  A +YI  L + 
Sbjct: 1  QSRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA--KLNKSAVLRKAIDYIRFLQHS 58

Query: 93 ICDMRGE 99
             ++ E
Sbjct: 59 NQKLKQE 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.76
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.67
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.59
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.52
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.93

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=7.7e-19  Score=114.91  Aligned_cols=57  Identities=33%  Similarity=0.497  Sum_probs=52.9

Q ss_pred             HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118         37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVIC   94 (137)
Q Consensus        37 ~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~   94 (137)
                      .+|.+||.+||.|+..||++|+.|+.+||.++. ++++|++||+.||+||.+|+++|.
T Consensus        11 ~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~~-~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPN-QRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTT-SCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHhh
Confidence            378899999999999999999999999998764 599999999999999999999875

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.9e-17  Score=108.97  Aligned_cols=62  Identities=27%  Similarity=0.435  Sum_probs=57.1

Q ss_pred             HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      ..+|..||++||+|+..||++|+.|+.+||.++...|+||++||..||+||..|++.+..+.
T Consensus         4 ~~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~   65 (88)
T d1nkpa_           4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI   65 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999988878899999999999999999999887653

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-16  Score=105.87  Aligned_cols=59  Identities=25%  Similarity=0.241  Sum_probs=55.0

Q ss_pred             HhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         39 RLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        39 R~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      |..||+.||+|+..||++|+.|+.+||..+...|+||++||..||+||..|+..+..+.
T Consensus         2 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~   60 (79)
T d1nlwa_           2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV   60 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999998888899999999999999999999877543

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.9e-16  Score=104.70  Aligned_cols=59  Identities=27%  Similarity=0.451  Sum_probs=53.2

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      +|..||.+||+|+..||++|+.|+.+||..+ +.++||++||+.||+||..|+..+..+.
T Consensus         2 rR~~Hn~~Er~RR~~in~~f~~L~~llP~~~-~~k~sK~~iL~~A~~yI~~L~~~~~~l~   60 (83)
T d1nkpb_           2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQ   60 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999654 4699999999999999999988776543

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=3e-16  Score=100.74  Aligned_cols=56  Identities=27%  Similarity=0.269  Sum_probs=50.5

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHV----KKERRLSKIETLTLAKNYIMALTNVI   93 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~----~~~kklSKi~tLr~Ai~YI~~L~~~L   93 (137)
                      +|..||..||+|+..||++|+.|+.+||..    ..+.|++|.+||+.|++||.+|++.+
T Consensus         2 rR~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            688999999999999999999999999952    35679999999999999999998743

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.9e-15  Score=98.15  Aligned_cols=60  Identities=25%  Similarity=0.330  Sum_probs=54.0

Q ss_pred             HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118         36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR   97 (137)
Q Consensus        36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~   97 (137)
                      ..+|..||..||+|+..||++|+.|+.+||..  ..|++|++||..||+||..|+..+..+.
T Consensus         4 ~~kR~~H~~~Er~RR~~in~~~~~L~~llP~~--~~k~~K~~iL~~a~~yI~~L~~~~~~L~   63 (80)
T d1am9a_           4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKLK   63 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999963  4599999999999999999999877654

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-15  Score=98.69  Aligned_cols=54  Identities=33%  Similarity=0.438  Sum_probs=49.7

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC---CCCCCCHHHHHHHHHHHHHHHHH
Q psy11118         38 RRLESNERERMRMHSLNDAFQSLREVIPHVK---KERRLSKIETLTLAKNYIMALTN   91 (137)
Q Consensus        38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~---~~kklSKi~tLr~Ai~YI~~L~~   91 (137)
                      +|..||..||+|+..||++|+.|+.+||.+.   .+.+++|.+||..|++||..|++
T Consensus         5 rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~   61 (65)
T d1an4a_           5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999753   45699999999999999999986

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.3e-10  Score=72.38  Aligned_cols=45  Identities=27%  Similarity=0.403  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118         52 SLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG   98 (137)
Q Consensus        52 ~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~   98 (137)
                      .||+.|..|+..||..  ..|++|++||..||+||..|+..+..+..
T Consensus         3 ~in~~f~~L~~lvP~~--~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~   47 (61)
T d1uklc_           3 SINDKIIELKDLVMGT--DAKMHKSGVLRKAIDYIKYLQQVNHKLRQ   47 (61)
T ss_dssp             CHHHHHHHHHHHHSCS--SCCCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCC--CCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999953  45999999999999999999998887654