Psyllid ID: psy11123

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MREDGERNDVTTHPSPTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVVTQYYATNRSNRRVHPTIVKAEEEMREDGGVEVKVEPGLELPSRKSKRKKVPRLVPDTGRPLTQRNFRFYVGTMCKALGSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMTDLEERLELKALEQDIDIT
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEEcEEEEEccccccccccEEEEEEEEccccccccccccEEEEEEEEcccccccccEEEEccccEEEEcEEEEEEEEEEEEEEcccccccEEEEEEEEEcccccccccccccccccEEcccHHHHHHHHccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHEcccccccccccccccccccccccccccHccccccccccccEEEEEEcccEcccccccccccccccccccEEEEEEEccccccccHHHHEEEEEEEEccccccccEEEEEcccEEEEEccccEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEEccHHHHHHHccccccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mredgerndvtthpsptldeskVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVVTQYYAtnrsnrrvhpTIVKAEEEmredggvevkvepglelpsrkskrkkvprlvpdtgrpltqrnFRFYVGTMckalgspacgqsthkwTVYVrncesnpeSIVRHIAHVKFMLhesyapnnvvivrkapfkitregwgefpmkitigfvdrennrnvelvhpvnflhvksiipiisletPIDVVLSLSETVLEYLMDADMMTDLEERLELKALEQDIDIT
Flexible Loop (DISEMBL)
mredgerndvtthpsptldeskvrDYLLREISTETaflesqavrlSDELNETLRLFRALKRSVVtqyyatnrsnrrvhptivkaeeemredggvevkvepglelpsrkskrkkvprlvpdtgrpltqrnFRFYVGTMCKALGSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHEsyapnnvviVRKAPFkitregwgefpMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMTDLEERLElkaleqdidit
Low Complexity Region (SEG)
MREDGERNDVTTHPSPTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVVTQYYATNRSNRRVHPTIVKAEEEMREDGGVEVKVEPGLElpsrkskrkkvprlvpDTGRPLTQRNFRFYVGTMCKALGSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMTDLEERLELKALEQDIDIT
Disordered region (IsUnstruct)
************************DYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVVTQYYATNR****************************************************LTQRNFRFYVGTMCKALGSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMTDL****************
Disordered Region (DISOPRED)
********************SKVRDYLLREISTETAFLES***RLSDELNETLRLFRALKRSVVTQYYA**********************************************************RNFRFYVGTMCKAL******QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETV*****************************
Disordered Region (DISEMBL)
***************PTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVVTQYYATNRSNRRVHPTIVKAEEEMREDGGVEVKVEPGLELPSRKSKRKKVPRLVPDTGRPLTQRNFRFYVGTMCKALGSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMTDLEERLELKALEQDIDIT
Disordered Region (DISPRO)
*************PSPTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVVTQYYATN*******************************************PRLVPDTGRPLTQRNFRFYVGTMC****SPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMTDLEERLELKALEQD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREDGERNDVTTHPSPTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVVTQYYATNRSNRRVHPTIVKAEEEMREDGGVEVKVEPGLELPSRKSKRKKVPRLVPDTGRPLTQRNFRFYVGTMCKALGSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMTDLEERLELKALEQDIDIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q3TUF7	1407	YEATS domain-containing p	yes	N/A	0.354	0.071	0.427	5e-17
Q9ULM3	1422	YEATS domain-containing p	yes	N/A	0.354	0.071	0.427	6e-17
Q755P0	208	Protein AF-9 homolog OS=A	yes	N/A	0.312	0.427	0.395	3e-11
Q6FXM4	221	Protein AF-9 homolog OS=C	yes	N/A	0.392	0.506	0.328	2e-10
Q6CIV8	220	Protein AF-9 homolog OS=K	yes	N/A	0.354	0.459	0.368	2e-10
P53930	226	Protein AF-9 homolog OS=S	yes	N/A	0.312	0.393	0.364	6e-10
Q5BC71	275	Protein AF-9 homolog OS=E	yes	N/A	0.259	0.269	0.428	1e-08
Q4WPM8	252	Protein AF-9 homolog OS=N	yes	N/A	0.259	0.293	0.389	1e-08
P0CM08	392	Protein AF-9 homolog OS=C	yes	N/A	0.438	0.318	0.282	2e-08
P0CM09	392	Protein AF-9 homolog OS=C	N/A	N/A	0.438	0.318	0.282	2e-08

>sp|Q3TUF7|YETS2_MOUSE YEATS domain-containing protein 2 OS=Mus musculus GN=Yeats2 PE=2 SV=2

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 2/103 (1%)

Query: 148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
           QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct: 230 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 288

Query: 208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL 250
           ++ + F D +N R ++++H +      + +  +  ET +DV L
Sbjct: 289 RVQVHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVEL 330

Component of the ATAC complex, a complex with histone acetyltransferase activity on histones H3 and H4.
Mus musculus (taxid: 10090)

>sp|Q9ULM3|YETS2_HUMAN YEATS domain-containing protein 2 OS=Homo sapiens GN=YEATS2 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 2/103 (1%)

Query: 148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
           QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct: 229 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 287

Query: 208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL 250
           ++ + F D +N R ++++H +      + +  +  ET +DV L
Sbjct: 288 RVQVHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVEL 329

Component of the ATAC complex, a complex with histone acetyltransferase activity on histones H3 and H4.

Homo sapiens (taxid: 9606)

>sp|Q755P0|AF9_ASHGO Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 135 GTMCKALGS--PACGQS--THKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIV 190
           G   K +G   PA   S  TH WT++VR  +   E I   I  V F LHE+Y PN V +V
Sbjct: 21  GNTAKKMGDVRPAIAPSEHTHMWTIFVRGPQG--EDISYFIKKVVFKLHETY-PNPVRVV 77

Query: 191 RKAPFKITREGWGEFPMKITIGFVDRENNRNVELVH 226
              PF++T  GWGEF + + + FVD  N + +   H
Sbjct: 78  DAPPFELTETGWGEFEINVKVHFVDEANEKMLNFYH 113

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6FXM4|AF9_CANGA Protein AF-9 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YAF9 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 13/125 (10%)

Query: 135 GTMCKALGSP----ACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIV 190
           G   K +G      A  + TH WT++VR+     + I   I  V F LHE+Y PN V  +
Sbjct: 21  GNTAKKIGENRPPNAPSEHTHLWTIFVRSPTG--DDISYFIKKVVFKLHETY-PNPVRTI 77

Query: 191 RKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL 250
              PF++T  GWGEF + I I FV+  N +       +NF H   + P +++  P+   +
Sbjct: 78  EAPPFELTETGWGEFDINIKIYFVEESNEKF------INFYHRLRLHPYVNVNPPMSTEV 131

Query: 251 SLSET 255
              ET
Sbjct: 132 KKEET 136

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q6CIV8|AF9_KLULA Protein AF-9 homolog OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YAF9 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 13/114 (11%)

Query: 135 GTMCKALGSP----ACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIV 190
           G   K +G      A    TH WT++VR+     E I   I  V F LHE+Y PN V ++
Sbjct: 22  GNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRG--EDISYFIKKVVFKLHETY-PNPVRVI 78

Query: 191 RKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLET 244
              PF++T  GWGEF + I I F D  N +       +NF H   + P I+ ET
Sbjct: 79  EAPPFELTETGWGEFEINIKIYFADVSNEKM------LNFYHHLRLHPYINPET 126

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P53930|AF9_YEAST Protein AF-9 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAF9 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 135 GTMCKALGS----PACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIV 190
           G   K +GS     A  + TH WT++VR  ++  E I   I  V F LH++Y PN V  +
Sbjct: 21  GNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQN--EDISYFIKKVVFKLHDTY-PNPVRSI 77

Query: 191 RKAPFKITREGWGEFPMKITIGFVDRENNRNVELVH 226
              PF++T  GWGEF + I + FV+  N + +   H
Sbjct: 78  EAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYH 113

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5BC71|AF9_EMENI Protein AF-9 homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=yaf9 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 150 THKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKI 209
           TH+W VYVR    N E I   I  V+F LHE+Y   NV  V   P+++T  GWGEF ++I
Sbjct: 42  THQWRVYVRGV--NGEDISYWIKKVQFKLHETYV-QNVRTVEHPPYEVTETGWGEFEIQI 98

Query: 210 TIGFVDRENNRNVELVH 226
            I FV     +   L H
Sbjct: 99  KIYFVPESMEKPQTLWH 115

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q4WPM8|AF9_ASPFU Protein AF-9 homolog OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yaf9 PE=3 SV=2

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 150 THKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKI 209
           TH+W V+V+    N E I   +  V+F LHE+YA  NV  + + PF++T  GWGEF ++I
Sbjct: 42  THQWRVFVKGV--NDEDISYWLKKVQFKLHETYA-QNVRTIEQPPFEVTETGWGEFEIQI 98

Query: 210 TIGFVDRENNRNVELVH 226
            + FV     +   L H
Sbjct: 99  KLYFVPESGEKPQTLWH 115

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|P0CM08|AF9_CRYNJ Protein AF-9 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=YAF9 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 27/152 (17%)

Query: 145 ACGQSTHKWTVYVRNCESNP-------------------ESIVRHIAHVKFMLHESYAPN 185
           A    THKWTV++ +  S P                   + +   I  V F LHE+YA  
Sbjct: 32  APAGHTHKWTVFLNSAASPPLKQGEPPDYEDIDYLPGGADDLSYFIRKVTFKLHETYATP 91

Query: 186 NVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSII---PIIS- 241
           N VI  K P++++  GWGEF ++I I  +   + + + L H +   H  + +   P++S 
Sbjct: 92  NRVI-DKPPYRVSETGWGEFTVQIRIQLIPESSEKPLGLQHNIKLHHWGAPVEPLPVVSG 150

Query: 242 LETPIDVVLSLSETVLEYLMDADMMTDLEERL 273
             TP  V    +E+  E  ++ D    LEE +
Sbjct: 151 APTPTPVP---TESNTEVKLEPDTPAPLEESV 179

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM09|AF9_CRYNB Protein AF-9 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=YAF9 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 27/152 (17%)

Query: 145 ACGQSTHKWTVYVRNCESNP-------------------ESIVRHIAHVKFMLHESYAPN 185
           A    THKWTV++ +  S P                   + +   I  V F LHE+YA  
Sbjct: 32  APAGHTHKWTVFLNSAASPPLKQGEPPDYEDIDYLPGGADDLSYFIRKVTFKLHETYATP 91

Query: 186 NVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSII---PIIS- 241
           N VI  K P++++  GWGEF ++I I  +   + + + L H +   H  + +   P++S 
Sbjct: 92  NRVI-DKPPYRVSETGWGEFTVQIRIQLIPESSEKPLGLQHNIKLHHWGAPVEPLPVVSG 150

Query: 242 LETPIDVVLSLSETVLEYLMDADMMTDLEERL 273
             TP  V    +E+  E  ++ D    LEE +
Sbjct: 151 APTPTPVP---TESNTEVKLEPDTPAPLEESV 179

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
194760683	955	GF14374 [Drosophila ananassae] gi|190616	0.596	0.178	0.333	1e-17
326925580	1410	PREDICTED: YEATS domain-containing prote	0.428	0.086	0.403	4e-17
449509424	1393	PREDICTED: YEATS domain-containing prote	0.428	0.087	0.403	6e-17
363736922	1408	PREDICTED: LOW QUALITY PROTEIN: YEATS do	0.428	0.086	0.403	9e-17
47228297	1310	unnamed protein product [Tetraodon nigro	0.894	0.194	0.271	1e-16
440802144	1027	YEATS family protein [Acanthamoeba caste	0.357	0.099	0.413	2e-16
432916776	1430	PREDICTED: YEATS domain-containing prote	0.856	0.170	0.262	2e-16
348500859	1437	PREDICTED: YEATS domain-containing prote	0.863	0.171	0.271	4e-16
395855421	1509	PREDICTED: YEATS domain-containing prote	0.428	0.080	0.379	5e-16
334324972	1399	PREDICTED: YEATS domain-containing prote	0.519	0.105	0.348	6e-16

>gi|194760683|ref|XP_001962567.1| GF14374 [Drosophila ananassae] gi|190616264|gb|EDV31788.1| GF14374 [Drosophila ananassae]

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 10/180 (5%)

Query: 83  KAEEEMREDGGVEVKVEPGLELPSRKSKRKKVPRLVPDTGRPLTQRNFRFYVGTMCKALG 142
           K E+ ++E   V VK+E      SR++  ++   L  +  R   +  F F VG   K +G
Sbjct: 203 KEEQPVQEVPAVSVKLEDEAPCTSRQALERQ---LELNASRLNNKNKFNFVVGNTSKYIG 259

Query: 143 SPACGQST------HKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFK 196
               G+ST      +KW VYV+  +  P+ +  +I  V+F LH SY PNN+V V   PF+
Sbjct: 260 DDMRGESTGSQALVYKWLVYVQG-KDLPQPLEAYIKKVRFQLHHSYRPNNIVDVHDPPFQ 318

Query: 197 ITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETV 256
           I+R GWGEFPM+I + F D  + + V+LVH V        +  +  ET +++ L   +++
Sbjct: 319 ISRRGWGEFPMRIQLFFQDHLHQKPVQLVHNVVLDKTMCGMHTMGAETIVEIWLRAEQSL 378

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326925580|ref|XP_003208990.1| PREDICTED: YEATS domain-containing protein 2-like [Meleagris gallopavo]

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 2/124 (1%)

Query: 148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
           QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct: 244 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 302

Query: 208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMT 267
           ++ I F D +N R ++++H +      + +  +  ET +DV L       EYL      +
Sbjct: 303 RVQIHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEEYLFSQSSES 361

Query: 268 DLEE 271
           DL +
Sbjct: 362 DLSD 365

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449509424|ref|XP_002189789.2| PREDICTED: YEATS domain-containing protein 2 [Taeniopygia guttata]

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 2/124 (1%)

Query: 148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
           QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct: 229 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 287

Query: 208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMT 267
           ++ I F D +N R ++++H +      + +  +  ET +DV L       EYL      +
Sbjct: 288 RVQIHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEEYLFSQSSES 346

Query: 268 DLEE 271
           DL +
Sbjct: 347 DLSD 350

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363736922|ref|XP_003641772.1| PREDICTED: LOW QUALITY PROTEIN: YEATS domain-containing protein 2 [Gallus gallus]

 Score = 93.6 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 2/124 (1%)

Query: 148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
           QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct: 237 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 295

Query: 208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMT 267
           ++ I F D +N R ++++H +      + +  +  ET +DV L       EYL       
Sbjct: 296 RVQIHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEEYLFSQSSEL 354

Query: 268 DLEE 271
           DL +
Sbjct: 355 DLSD 358

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47228297|emb|CAG07692.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 131/321 (40%), Gaps = 66/321 (20%)

Query: 1   MREDGERNDVTTHPSPTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALK 60
           + ++ +RN V  H +      K+   +  + S E    E +   +S  LNE  R+   L+
Sbjct: 20  LAQNSKRNKVEEHNAREATVRKIEAIIKEQFSLEMKNKEHEIDVISQRLNEARRMMDKLR 79

Query: 61  RSVVTQYYAT----------NRSNRRV--HPTIVK-----------------------AE 85
             +V  Y+A           ++S+  V  HP I +                       +E
Sbjct: 80  ACIVANYFANAGMTKVPEHASKSDPAVLNHPAIRRFLESPSRSSSPLNQGSETLSLGQSE 139

Query: 86  EE--------------MREDGGVEVKVEPG-------LELPSRKSKRKKVPRLV--PDTG 122
            E               REDGG   +  PG         +PS      +V      P+  
Sbjct: 140 SESLSQQGDESEKDGVFREDGG-RPEGRPGRNTGRDTFGVPSSLGAEHRVTYHTSGPEAS 198

Query: 123 RPLTQRNFRFYVGTMCKAL---GSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLH 179
           R   ++     VG + K +         QSTHKW VYVR     P SI   +  V F LH
Sbjct: 199 RLYAKKTI--VVGNVSKYIPPDKREESDQSTHKWMVYVRGSRKEP-SIDHFVKKVWFFLH 255

Query: 180 ESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPI 239
            SY PN++V V + PF +TR GWGEFP++I I F D  N R V+++H +      + +  
Sbjct: 256 PSYKPNDLVEVSEPPFHLTRRGWGEFPVRIQIHFKDPRNKR-VDIIHQLKLDRTYTGLQT 314

Query: 240 ISLETPIDVVLSLSETVLEYL 260
           +  ET +DV L     V +Y+
Sbjct: 315 LGAETVVDVELHRDTLVDDYI 335

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440802144|gb|ELR23083.1| YEATS family protein [Acanthamoeba castellanii str. Neff]

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 2/104 (1%)

Query: 148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
           +STHKW VYVR     P+ I   +   +F LH S+APN+VV V   PF +TR GWGEFP+
Sbjct: 597 RSTHKWMVYVRGPAEEPD-ISHFVKKARFFLHPSFAPNDVVEVLHPPFHLTRRGWGEFPV 655

Query: 208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLS 251
           ++ + FVD   N+ V+++H +      S + ++  ETP++V L+
Sbjct: 656 RVQLHFVD-TRNKPVDIIHHLKLDQTHSGLQMLGGETPVEVELN 698

Source: Acanthamoeba castellanii str. Neff

Species: Acanthamoeba castellanii

Genus: Acanthamoeba

Superkingdom: Eukaryota

>gi|432916776|ref|XP_004079378.1| PREDICTED: YEATS domain-containing protein 2-like [Oryzias latipes]

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 126/308 (40%), Gaps = 64/308 (20%)

Query: 4   DGERNDVTTHPSPTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSV 63
           + +RN    H +      K+   +  + S E    E +   +S  LNE  ++   L+  +
Sbjct: 23  NNKRNKTAEHDAREATIQKIETIIKEQFSLEMKNKEHEIDVISQRLNEARKMMDRLRACI 82

Query: 64  VTQYYAT------------------------------NRSNRRVH-----PTIVKAEEE- 87
           V  YYA+                              +RS+  V+     P++V++E E 
Sbjct: 83  VANYYASAGITKVPEHAPKSDPAVLNHPAIRRFLEPPSRSSSPVNQGSETPSLVQSESES 142

Query: 88  ---------------MREDGGVEVKVEPG-------LELPSRKSKRKKVPRLVPDTGRPL 125
                           RE+G  +V+  PG         +PS     ++V  L        
Sbjct: 143 LSQQGDGAERNGEGAWREEGSRQVR-RPGRNTGKDTFGVPSTIGAEQRVTYLTTGDEASR 201

Query: 126 TQRNFRFYVGTMCKAL---GSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESY 182
                   VG + K +         QSTHKW VYVR     P SI   +  V F LH SY
Sbjct: 202 LYVKKTIVVGNVSKYIPPDKREESDQSTHKWMVYVRGSRREP-SIDHFVKKVWFFLHPSY 260

Query: 183 APNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISL 242
            PN++V V ++PF +TR GWGEFP++I I F D  N R ++++H +      + +  +  
Sbjct: 261 KPNDLVEVSESPFHLTRRGWGEFPVRIQIHFKDPRNKR-IDIIHQLKLDRTYTGLQTLGA 319

Query: 243 ETPIDVVL 250
           ET +DV L
Sbjct: 320 ETVVDVEL 327

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348500859|ref|XP_003437989.1| PREDICTED: YEATS domain-containing protein 2-like [Oreochromis niloticus]

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 126/306 (41%), Gaps = 60/306 (19%)

Query: 3   EDGERNDVTTHPSPTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRS 62
           ++ +RN    H +      K+   +  + S E    E +   +S  LNE  R+   L+  
Sbjct: 22  QNSKRNKAAEHSAREATVQKIETIIKEQFSLEMKNKEHEIDVISQRLNEARRMMDKLRAC 81

Query: 63  VVTQYYA----------TNRSNRRV-------------------------HPTIVKAEEE 87
           +V  YYA          T++S+  V                          P++V++E E
Sbjct: 82  IVANYYASAGLTKLSEHTSKSDPAVLNHPAIRRFLESPSRSSSPLNQGSETPSLVQSESE 141

Query: 88  M--REDGGVEVKVEPGLELPSRKSKRKKVPRLVPDT-GRPLTQRN-----------FRFY 133
              ++  G E   E      S + +R+       DT G P +               R Y
Sbjct: 142 SLSQQGDGAERNGEGAWREESSRQERRPGRNTGKDTFGVPSSAEQRVTYHTTGDDASRLY 201

Query: 134 ------VGTMCKAL---GSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAP 184
                 VG + K +         QSTHKW VYVR     P SI   +  V F LH SY P
Sbjct: 202 AKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKP 260

Query: 185 NNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLET 244
           N++V V + PF +TR GWGEFP++I I F D  N R ++++H +      + +  +  ET
Sbjct: 261 NDLVEVSEPPFHLTRRGWGEFPVRIQIHFKDPRNKR-IDIIHQLKLDRTYTGLQTLGAET 319

Query: 245 PIDVVL 250
            +DV L
Sbjct: 320 VVDVEL 325

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395855421|ref|XP_003800161.1| PREDICTED: YEATS domain-containing protein 2 [Otolemur garnettii]

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 2/124 (1%)

Query: 148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
           QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct: 316 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 374

Query: 208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMT 267
           ++ + F D +N R ++++H +      + +  +  ET +DV L       EY+    + +
Sbjct: 375 RVQVHFKDNQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEEYIYPQPLES 433

Query: 268 DLEE 271
           D+ +
Sbjct: 434 DVSD 437

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334324972|ref|XP_001366314.2| PREDICTED: YEATS domain-containing protein 2 isoform 1 [Monodelphis domestica]

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 7/155 (4%)

Query: 99  EPGLELPSRKSKRKKVPRLVPDTGRPLTQRNFRFYVGTMCKAL---GSPACGQSTHKWTV 155
           +PG    SRK+ ++       D  R   ++     VG + K +         QSTHKW V
Sbjct: 181 DPGSGASSRKANQQNSDLTSEDVSRLFVKKTI--VVGNVSKYIPPDKREENDQSTHKWMV 238

Query: 156 YVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVD 215
           YVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+++ + F D
Sbjct: 239 YVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKD 297

Query: 216 RENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL 250
            +N R ++++H +      + +  +  ET +DV L
Sbjct: 298 NQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVEL 331

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
UNIPROTKB|E1BW02	1265	YEATS2 "Uncharacterized protei	0.428	0.096	0.403	6.6e-22
UNIPROTKB|E1BW01	1421	YEATS2 "Uncharacterized protei	0.428	0.085	0.403	8.9e-22
UNIPROTKB|E1C1B7	1425	YEATS2 "Uncharacterized protei	0.428	0.085	0.403	8.9e-22
ZFIN|ZDB-GENE-081104-292	1417	si:ch73-60l17.1 "si:ch73-60l17	0.354	0.071	0.427	4.3e-20
RGD|1566176	1303	Yeats2 "YEATS domain containin	0.428	0.093	0.370	8.9e-20
UNIPROTKB|A7Z088	1412	YEATS2 "YEATS2 protein" [Bos t	0.438	0.088	0.393	2.3e-19
MGI|MGI:2447762	1407	Yeats2 "YEATS domain containin	0.354	0.071	0.427	2.8e-19
UNIPROTKB|J9NTU6	1410	YEATS2 "Uncharacterized protei	0.354	0.071	0.427	2.9e-19
UNIPROTKB|F6UZ61	1415	YEATS2 "Uncharacterized protei	0.354	0.071	0.427	2.9e-19
UNIPROTKB|Q9ULM3	1422	YEATS2 "YEATS domain-containin	0.354	0.071	0.427	2.9e-19

UNIPROTKB|E1BW02 YEATS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
 Identities = 50/124 (40%), Positives = 69/124 (55%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct:   229 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 287

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMT 267
             ++ I F D +N R ++++H +      + +  +  ET +DV L       EYL       
Sbjct:   288 RVQIHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEEYLFSQSSEL 346

Query:   268 DLEE 271
             DL +
Sbjct:   347 DLSD 350

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1BW01 YEATS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
 Identities = 50/124 (40%), Positives = 69/124 (55%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct:   229 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 287

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMT 267
             ++ I F D +N R ++++H +      + +  +  ET +DV L       EYL       
Sbjct:   288 RVQIHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEEYLFSQSSEL 346

Query:   268 DLEE 271
             DL +
Sbjct:   347 DLSD 350

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1C1B7 YEATS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
 Identities = 50/124 (40%), Positives = 69/124 (55%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct:   229 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 287

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMT 267
             ++ I F D +N R ++++H +      + +  +  ET +DV L       EYL       
Sbjct:   288 RVQIHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEEYLFSQSSEL 346

Query:   268 DLEE 271
             DL +
Sbjct:   347 DLSD 350

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0072686 "mitotic spindle" evidence=IEA

ZFIN|ZDB-GENE-081104-292 si:ch73-60l17.1 "si:ch73-60l17.1" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
 Identities = 44/103 (42%), Positives = 62/103 (60%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V V + PF +TR GWGEFP+
Sbjct:   226 QSTHKWMVYVRGSRKEP-SIDHFVKKVWFFLHPSYKPNDLVEVSEPPFHLTRRGWGEFPV 284

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL 250
             ++ I F D+ N R ++++H +      + +  +  ET +DV L
Sbjct:   285 RVQIHFKDQRNKR-IDIIHHLKLDRTYTGLQTLGAETVVDVQL 326

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1566176 Yeats2 "YEATS domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 8.9e-20, Sum P(2) = 8.9e-20
 Identities = 46/124 (37%), Positives = 70/124 (56%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct:   230 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 288

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVLSLSETVLEYLMDADMMT 267
             ++ + F D +N R ++++H +      + +  +  ET +DV L       +Y+      +
Sbjct:   289 RVQVHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDYVYPQSSES 347

Query:   268 DLEE 271
             D+ +
Sbjct:   348 DISD 351

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

UNIPROTKB|A7Z088 YEATS2 "YEATS2 protein" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
 Identities = 52/132 (39%), Positives = 76/132 (57%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct:   230 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 288

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL---SLSE-TVLEYLMDA 263
             ++ + F D +N R ++++H +      + +  +  ET +DV L   SL E +V     ++
Sbjct:   289 RVQVHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDSVYPQSSES 347

Query:   264 DMMTDLEERLEL 275
             D+ +D    L L
Sbjct:   348 DI-SDAPPSLPL 358

GO:0072686 "mitotic spindle" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2447762 Yeats2 "YEATS domain containing 2" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
 Identities = 44/103 (42%), Positives = 63/103 (61%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct:   230 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 288

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL 250
             ++ + F D +N R ++++H +      + +  +  ET +DV L
Sbjct:   289 RVQVHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVEL 330

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0072686 "mitotic spindle" evidence=IDA

UNIPROTKB|J9NTU6 YEATS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 227 (85.0 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
 Identities = 44/103 (42%), Positives = 63/103 (61%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct:   230 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 288

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL 250
             ++ + F D +N R ++++H +      + +  +  ET +DV L
Sbjct:   289 RVQVHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVEL 330

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F6UZ61 YEATS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 227 (85.0 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
 Identities = 44/103 (42%), Positives = 63/103 (61%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct:   230 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 288

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL 250
             ++ + F D +N R ++++H +      + +  +  ET +DV L
Sbjct:   289 RVQVHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVEL 330

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9ULM3 YEATS2 "YEATS domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
 Identities = 44/103 (42%), Positives = 63/103 (61%)

Query:   148 QSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
             QSTHKW VYVR     P SI   +  V F LH SY PN++V VR+ PF +TR GWGEFP+
Sbjct:   229 QSTHKWMVYVRGSRREP-SINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 287

Query:   208 KITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPIDVVL 250
             ++ + F D +N R ++++H +      + +  +  ET +DV L
Sbjct:   288 RVQVHFKDSQNKR-IDIIHNLKLDRTYTGLQTLGAETVVDVEL 329

GO:0072686 "mitotic spindle" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0017025 "TBP-class protein binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	285
pfam03366	84	pfam03366, YEATS, YEATS family	5e-22
COG5033	225	COG5033, TFG3, Transcription initiation factor IIF	2e-09

>gnl|CDD|190614 pfam03366, YEATS, YEATS family

 Score = 87.2 bits (217), Expect = 5e-22
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 150 THKWTVYVR--NCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
           THKWTV+VR  + E +    ++    V F LHES+ PN V  V K PF++T  GWGEF +
Sbjct: 1   THKWTVFVRGLDNEGDLSYFIKK---VTFKLHESF-PNPVRTVTKPPFEVTETGWGEFEI 56

Query: 208 KITIGFVDRENNRNVELVHPVNF 230
            I I FVD  N + V + H +  
Sbjct: 57  PIKIYFVD-SNEKPVTIQHDLKL 78

We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit'. This family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity. Length = 84

>gnl|CDD|227366 COG5033, TFG3, Transcription initiation factor IIF, auxiliary subunit [Transcription]

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 150 THKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKI 209
           TH W V+VR      E I   +  V F LH ++  N    +   PF+I   GWGEF ++I
Sbjct: 35  THIWLVFVRA--PGKEDIATIVKKVIFKLHPTF-SNPTRTIESPPFEIKETGWGEFDIQI 91

Query: 210 TIGFVDRENNRNVELVH 226
            I F ++   + +    
Sbjct: 92  KIFFAEKAGEKTIHFYL 108

Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PF03366	84	YEATS: YEATS family; InterPro: IPR005033 Named the	99.98
KOG3149|consensus	249		99.95
COG5033	225	TFG3 Transcription initiation factor IIF, auxiliar	99.93

>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein

Probab=99.98  E-value=6.4e-33  Score=217.82  Aligned_cols=81  Identities=43%  Similarity=0.814  Sum_probs=68.0

Q ss_pred             ceeEEEEEEcCCCCCccccceeeeEEEEeCCCCCCCceeEeecCCeEEEeeeeeeEEEEEEEEEecCCCCcceEEEEEEe
Q psy11123        150 THKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVN  229 (285)
Q Consensus       150 THkWtVYVR~~~~e~edls~~IkKVtF~LHpSF~pnp~rvV~~PPFeVtE~GWGEF~I~I~I~Fk~~~~~k~v~i~H~L~  229 (285)
                      ||+|+||||+++++  +++.+|+||+|+||||| +||+|+|++|||+|+|+|||||+|.|+|+|++.++.++++|.|+|+
T Consensus         1 th~W~v~Vr~~~~~--d~~~~i~kV~f~LHpsF-~~p~r~v~~pPFevte~GWGeF~i~I~i~f~~~~~~~~~~~~h~L~   77 (84)
T PF03366_consen    1 THKWTVYVRGLDNE--DLSYFIKKVTFKLHPSF-PNPVRVVTKPPFEVTETGWGEFEIPIKIHFKDPSNEKPVTIQHDLK   77 (84)
T ss_dssp             -EEEEEEEEECCCT----TTTEEEEEEES-TTS-SS-EEECSSTTEEEEEEESS--EEEEEEECCCGGCTCEEEEEEE--
T ss_pred             CcEEEEEEEeCCCC--CccceEEEEEEECCCCC-CCCceEecCCCCEEEEeEeccEEEEEEEEEeCCCCCCcEEEEEEEE
Confidence            79999999999987  79999999999999999 5899999999999999999999999999999976667799999999


Q ss_pred             eCCC
Q psy11123        230 FLHV  233 (285)
Q Consensus       230 L~~~  233 (285)
                      |+++
T Consensus        78 l~~~   81 (84)
T PF03366_consen   78 LHQD   81 (84)
T ss_dssp             SSSC
T ss_pred             cCCC
Confidence            9865

All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.

>KOG3149|consensus

Probab=99.95  E-value=2.1e-28  Score=225.20  Aligned_cols=135  Identities=31%  Similarity=0.455  Sum_probs=112.9

Q ss_pred             ceeeeEEECccccccCCCCCCCCceeEEEEEEcCCCCCccccceeeeEEEEeCCCCCCCceeEeecCCeEEEeeeeeeEE
Q psy11123        127 QRNFRFYVGTMCKALGSPACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFP  206 (285)
Q Consensus       127 ~r~~~IViGn~a~~l~~~~~~~~THkWtVYVR~~~~e~edls~~IkKVtF~LHpSF~pnp~rvV~~PPFeVtE~GWGEF~  206 (285)
                      +...+|++||.|+.++++.++.+||.|+||||+...+  +++.||+||+|+||+|| +||+|+|++|||+|+|+|||+|+
T Consensus        13 ~~~~~iv~G~~a~~~~~~~~~~~th~w~v~v~~~~~e--d~~~~V~KV~f~LH~sf-~~P~Rvv~~pPf~i~EtGwgeF~   89 (249)
T KOG3149|consen   13 TISVPIVPGNRAAILGKRLPDGFTHIWEVYVRGPGKE--DISAFVDKVVFKLHESF-PNPRRVVESPPFEITETGWGEFE   89 (249)
T ss_pred             eEEeeeecCccccccCCCCCcccceeeEEEecCcCcc--ccceeeeeeeeeccccc-ccccccccCCCceEEeeccccce
Confidence            4556999999999999988889999999999999877  79999999999999999 79999999999999999999999


Q ss_pred             EEEEEEEecCCCCcceEEEEEEeeCCCCCCC-cc-------cccccceEEEeeccccce-eeeecCc
Q psy11123        207 MKITIGFVDRENNRNVELVHPVNFLHVKSII-PI-------ISLETPIDVVLSLSETVL-EYLMDAD  264 (285)
Q Consensus       207 I~I~I~Fk~~~~~k~v~i~H~L~L~~~~tg~-~t-------~g~et~v~v~l~~~e~~~-e~~~~~~  264 (285)
                      |.|+|||.+..+++++.+.|+|+++..+.+. +.       ...++..-=+-..+..++ +++|.++
T Consensus        90 i~i~i~f~d~~~~~~v~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~r~~v~~~~~~~e~~f~~~  156 (249)
T KOG3149|consen   90 IQIEIFFTDDANEKKVTLYHDLKLHSYGAPPVPHEESTKKTFVNPTISLRIPVVREGVDVEIVFPDP  156 (249)
T ss_pred             EEEEEEeccCCCCceeeeeeeEEeeccCCCCccchhhhcccccccchhcccccccccccceeecCCC
Confidence            9999999998888889999999998775431 11       111111111223467788 9999987

>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]

Probab=99.93  E-value=9e-27  Score=209.59  Aligned_cols=97  Identities=29%  Similarity=0.536  Sum_probs=85.6

Q ss_pred             eeEEECccccccCCC--CCCCCceeEEEEEEcCCCCCccccceeeeEEEEeCCCCCCCceeEeecCCeEEEeeeeeeEEE
Q psy11123        130 FRFYVGTMCKALGSP--ACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM  207 (285)
Q Consensus       130 ~~IViGn~a~~l~~~--~~~~~THkWtVYVR~~~~e~edls~~IkKVtF~LHpSF~pnp~rvV~~PPFeVtE~GWGEF~I  207 (285)
                      .+|+.| .|+.++..  .+-.+||-|.||||+..++  +++.||+||+|+||||| +||.|++.+|||+|.|+|||||+|
T Consensus        14 r~Iipg-ea~~~~~e~~~P~r~th~w~v~v~~~g~E--~~~~iv~KVifkLH~Tf-~NP~Rti~~pPFeI~EtGWGEF~i   89 (225)
T COG5033          14 RVIIPG-EAKPLGNEERFPVRHTHIWLVFVRAPGKE--DIATIVKKVIFKLHPTF-SNPTRTIESPPFEIKETGWGEFDI   89 (225)
T ss_pred             ceeccC-ccccCCccccCCchhhEEEEEEEeCCCCc--chhhhhheeeEEecccc-CCCcccccCCCcEEEecccccceE
Confidence            355555 99999885  4567899999999999887  89999999999999999 699999999999999999999999


Q ss_pred             EEEEEEecCCCCcceEEEEEEeeCC
Q psy11123        208 KITIGFVDRENNRNVELVHPVNFLH  232 (285)
Q Consensus       208 ~I~I~Fk~~~~~k~v~i~H~L~L~~  232 (285)
                      .|+|||.+..+++  +|.|+|.|..
T Consensus        90 ~I~iff~~~age~--~~~fyl~f~~  112 (225)
T COG5033          90 QIKIFFAEKAGEK--TIHFYLHFGD  112 (225)
T ss_pred             EEEEEEecCCCce--Eeehhhhccc
Confidence            9999999999977  6667666643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
3rls_A	175	Crystal Structure Of Yeast Af-9 Homolog Protein Yaf		8e-11
3fk3_A	164	Structure Of The Yeats Domain, Yaf9 Length = 164		3e-10

>pdb|3RLS|A Chain A, Crystal Structure Of Yeast Af-9 Homolog Protein Yaf9 Length = 175

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 135 GTMCKALGS----PACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIV 190
           G   K +GS     A  + TH WT++VR  ++  E I   I  V F LH++Y PN V  +
Sbjct: 13  GNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQN--EDISYFIKKVVFKLHDTY-PNPVRSI 69
Query: 191 RKAPFKITREGWGEFPMKITIGFVDRENNRNVELVH 226
              PF++T  GWGEF + I + FV+  N + +   H
Sbjct: 70  EAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYH 105

>pdb|3FK3|A Chain A, Structure Of The Yeats Domain, Yaf9 Length = 164

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 135 GTMCKALGS----PACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIV 190
           G   K  GS     A  + TH WT++VR  ++  E I   I  V F LH++Y PN V  +
Sbjct: 16  GNTAKKXGSVKPPNAPAEHTHLWTIFVRGPQN--EDISYFIKKVVFKLHDTY-PNPVRSI 72
Query: 191 RKAPFKITREGWGEFPMKITIGFVDRENNRNVELVH 226
              PF++T  GWGEF + I + FV+  N + +   H
Sbjct: 73  EAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYH 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
3rls_A	175	YAF9, protein AF-9 homolog; yeats domain, histone,	2e-20
3qrl_A	140	Transcription initiation factor TFIID subunit 14;	1e-19

>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A Length = 175

 Score = 85.2 bits (210), Expect = 2e-20
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 131 RFYVGTMCKALGSP----ACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNN 186
               G   K +GS     A  + TH WT++VR  ++   S    I  V F LH++Y PN 
Sbjct: 9   PIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYF--IKKVVFKLHDTY-PNP 65

Query: 187 VVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPI 246
           V  +   PF++T  GWGEF + I + FV+  N + +   H +      + +P        
Sbjct: 66  VRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQ 125

Query: 247 D 247
           +
Sbjct: 126 N 126

>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A Length = 140

 Score = 81.9 bits (202), Expect = 1e-19
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 131 RFYVGTMCKALG--SPACGQSTHKWTVYVRNCESNPESIVRH-IAHVKFMLHESYAPNNV 187
              + T    L    P       +W++ +   +   + I       V + LH ++  N  
Sbjct: 11  TIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTF-ANPN 69

Query: 188 VIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNF-LHVKSIIPIISLETPI 246
                 PF+I  +GWG FP+ I++  ++       ++ H +NF      +  +I +    
Sbjct: 70  RTFTDPPFRIEEQGWGGFPLDISVFLLE--KAGERKIPHDLNFLQESYEVEHVIQIPLNK 127

Query: 247 DVVLSL 252
            ++   
Sbjct: 128 PLLTEE 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
3rls_A	175	YAF9, protein AF-9 homolog; yeats domain, histone,	100.0
3qrl_A	140	Transcription initiation factor TFIID subunit 14;	99.96

>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A

Probab=100.00  E-value=7.9e-39  Score=279.77  Aligned_cols=133  Identities=27%  Similarity=0.483  Sum_probs=110.3

Q ss_pred             CceeeeEEECccccccCCC----CCCCCceeEEEEEEcCCCCCccccceeeeEEEEeCCCCCCCceeEeecCCeEEEeee
Q psy11123        126 TQRNFRFYVGTMCKALGSP----ACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREG  201 (285)
Q Consensus       126 ~~r~~~IViGn~a~~l~~~----~~~~~THkWtVYVR~~~~e~edls~~IkKVtF~LHpSF~pnp~rvV~~PPFeVtE~G  201 (285)
                      .+..++|||||+|+++++.    .++++||+|+||||+++++  ++++||+||+|+||||| +||+|+|++|||+|+|+|
T Consensus         4 v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~e--dis~~v~KV~F~LHpSF-~np~Rvv~~PPFevtE~G   80 (175)
T 3rls_A            4 LSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNE--DISYFIKKVVFKLHDTY-PNPVRSIEAPPFELTETG   80 (175)
T ss_dssp             CCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGC--CCTTTEEEEEEECCTTS-SSCEEEECSSSEEEEEEE
T ss_pred             eEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCC--ChhheEEEEEEEcCCCC-CCCcEEEeCCCCEEEEeE
Confidence            3578999999999999873    4578999999999999876  89999999999999999 799999999999999999


Q ss_pred             eeeEEEEEEEEEecCCCCcceEEEEEEeeCCCCCCC-------cccc-----cccceEEEeeccccceeeeecCccc
Q psy11123        202 WGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSII-------PIIS-----LETPIDVVLSLSETVLEYLMDADMM  266 (285)
Q Consensus       202 WGEF~I~I~I~Fk~~~~~k~v~i~H~L~L~~~~tg~-------~t~g-----~et~v~v~l~~~e~~~e~~~~~~~~  266 (285)
                      ||||+|.|+|||++.+++++++|.|+|+|++.....       +..+     ...+|     .|+.|||++|+++..
T Consensus        81 WGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V-----~se~ydEivF~ePte  152 (175)
T 3rls_A           81 WGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEV-----SSVYFDEIVFNEPNE  152 (175)
T ss_dssp             SSCCEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCE-----EEEEEEEEEESSCCH
T ss_pred             EeeEEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCce-----EEEEeccEEEeCCCH
Confidence            999999999999998877889999999999765321       1100     12222     577999999999853

>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A

Probab=99.96  E-value=1.8e-29  Score=213.85  Aligned_cols=101  Identities=22%  Similarity=0.479  Sum_probs=85.6

Q ss_pred             ceeeeEEECccccccCCC--CCCCCceeEE--EEEEcCCCCCccccceeeeEEEEeCCCCCCCceeEeecCCeEEEeeee
Q psy11123        127 QRNFRFYVGTMCKALGSP--ACGQSTHKWT--VYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGW  202 (285)
Q Consensus       127 ~r~~~IViGn~a~~l~~~--~~~~~THkWt--VYVR~~~~e~edls~~IkKVtF~LHpSF~pnp~rvV~~PPFeVtE~GW  202 (285)
                      .|..+|+.+..  .++..  ..+.++|+|+  |||||.++++ ..++||+||+|+||||| +||+|++++|||+|+|+||
T Consensus         9 krtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~e-i~~~~i~kV~f~LH~sF-~np~r~v~~pPF~v~e~GW   84 (140)
T 3qrl_A            9 KRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGKE-IPATIFDKVIYHLHPTF-ANPNRTFTDPPFRIEEQGW   84 (140)
T ss_dssp             EEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSCE-ECCTTEEEEEEECCTTS-SSCEEEECSTTCCEEEEES
T ss_pred             EEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCCc-CchheEEEEEEEeCCCC-CCCeEEEcCCCcEEEEEEe
Confidence            45567777776  44443  3356789999  8999999883 44689999999999999 5999999999999999999


Q ss_pred             eeEEEEEEEEEecCCCCcceEEEEEEeeCCC
Q psy11123        203 GEFPMKITIGFVDRENNRNVELVHPVNFLHV  233 (285)
Q Consensus       203 GEF~I~I~I~Fk~~~~~k~v~i~H~L~L~~~  233 (285)
                      |||+|.|+|||++.++  +++|.|+|+|++.
T Consensus        85 GeF~i~I~i~f~~~~~--~~~i~H~L~f~~~  113 (140)
T 3qrl_A           85 GGFPLDISVFLLEKAG--ERKIPHDLNFLQE  113 (140)
T ss_dssp             SCCCEEEEEEEGGGTE--EEEEEECCCSSSS
T ss_pred             eeEEEEEEEEEecCCC--cEEEEEEEEeCCC
Confidence            9999999999998764  4899999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00