Psyllid ID: psy11131

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MEPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHYNN
Secondary Structure (PSIPRED)
cEEEEEcccccEEEEccEEEEccccccccEEEEEEEEcccccEEEEEEEEEEcccEEEEccccEEEcccccEEEEEEEEEccccccEEEEEEccEEcccccccccEEEccccccccEEEEEEEEEcccccEEEEEEEEEcccccEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccEEEEEccccccccEEEEEEEccccEEEEEEEEEEEccccEEEccccEEEEccccEEEEEEEccccccccEEEEEEcccEccccccccEEEEEEEccccccEEEEEEEcccccEEEEEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
mepllvlpgprtrvlgpilaiegvtaedsgtyrcsssniggeaTAEVRLQvstpyrvdvnppllsvhldgsanfqceitpydsgpyliawfkdgrqipgrtsstslvinpvgredrgiyqciarrsdgdvaqgsaelqlggtrnikhynn
Flexible Loop (DISEMBL)
mepllvlpgprtrvlgPILAIegvtaedsgtyrcSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGrqipgrtsstslvinpvgreDRGIYQCIArrsdgdvaqgsaelqlggtrnikhynn
Low Complexity Region (SEG)
MEPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHYNN
Disordered region (IsUnstruct)
*****VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR**************************
Disordered Region (DISOPRED)
*EPLL**PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR**********LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG*********
Disordered Region (DISEMBL)
MEPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHYNN
Disordered Region (DISPRO)
MEPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHYNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.913	0.066	0.570	2e-39
P20241	1302	Neuroglian OS=Drosophila	no	N/A	0.706	0.081	0.336	3e-08
Q8IVU1	814	Immunoglobulin superfamil	yes	N/A	0.833	0.153	0.314	4e-08
Q810U4	1256	Neuronal cell adhesion mo	no	N/A	0.8	0.095	0.296	1e-07
O94856	1347	Neurofascin OS=Homo sapie	no	N/A	0.766	0.085	0.291	1e-07
Q92823	1304	Neuronal cell adhesion mo	no	N/A	0.7	0.080	0.284	1e-07
Q6AZB0	1110	Brother of CDO OS=Mus mus	no	N/A	0.846	0.114	0.333	2e-07
P97685	1240	Neurofascin OS=Rattus nor	no	N/A	0.766	0.092	0.291	2e-07
Q810U3	1240	Neurofascin OS=Mus muscul	no	N/A	0.766	0.092	0.291	2e-07
P53767	1336	Vascular endothelial grow	no	N/A	0.8	0.089	0.330	2e-07

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score =  161 bits (407), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 106/142 (74%), Gaps = 5/142 (3%)

Query: 3   PLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
           PL VL GPR R+LGPILAIE VT EDSG Y+C++ N+GGEA+AE+RL V+TP +V+++P 
Sbjct: 279 PLPVLSGPRVRLLGPILAIEAVTGEDSGVYKCTAGNVGGEASAELRLTVATPIQVEISPN 338

Query: 63  LLSVHLDGSANFQCEITPYDS--GPYLIAWFKDGRQIP--GRTSSTSLVINPVGREDRGI 118
           +LSVH+ G+A F+C +T   S  G   I W+KDGRQ+P  GR   T LV+  V RE+RG+
Sbjct: 339 VLSVHMGGTAEFRCLVTSNGSPVGMQNILWYKDGRQLPSSGRVEDT-LVVPRVSRENRGM 397

Query: 119 YQCIARRSDGDVAQGSAELQLG 140
           YQC+ RR +GD  Q +AELQLG
Sbjct: 398 YQCVVRRPEGDTFQATAELQLG 419

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|P20241|NRG_DROME Neuroglian OS=Drosophila melanogaster GN=Nrg PE=1 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I+ VT  D+G Y C + N  GE  A+  L V    R+   P    V    SA F+C  
Sbjct: 485 LEIQDVTFSDAGKYTCYAQNKFGEIQADGSLVVKEHTRITQEPQNYEVAAGQSATFRCNE 544

Query: 79  TPYDSGPYLIAWFKDGRQIPG-------RTSSTSLVINPVGREDRGIYQCIAR 124
              D+    I W+KDG+ I         +T+  SL I      D G Y C+AR
Sbjct: 545 AHDDTLEIEIDWWKDGQSIDFEAQPRFVKTNDNSLTIAKTMELDSGEYTCVAR 597

The long isoform may play a role in neural and glial cell adhesion in the developing embryo. The short isoform may be a more general cell adhesion molecule involved in other tissues and imaginal disk morphogenesis. Vital for embryonic development. Essential for septate junctions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion. Required for the blood-brain barrier formation.

Drosophila melanogaster (taxid: 7227)

>sp|Q8IVU1|IGDC3_HUMAN Immunoglobulin superfamily DCC subclass member 3 OS=Homo sapiens GN=IGDCC3 PE=2 SV=2

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 18/143 (12%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQC 76
           L I  VT + SG Y C+++  G     TA+ RL V  P     +P  +S     +A F C
Sbjct: 292 LIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVVQAPAEFVQHPQSISRPAGTTAMFTC 351

Query: 77  EITPYDSGPYLIAWFKDGRQI-PG-----RTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
           +       P  + W K+G+ + PG     + ++++L I+ +G ED  IYQC+A  S G  
Sbjct: 352 QAQ--GEPPPHVTWLKNGQVLGPGGHVRLKNNNSTLTISGIGPEDEAIYQCVAENSAGS- 408

Query: 131 AQGSAELQL-------GGTRNIK 146
           +Q SA L +       G  RN++
Sbjct: 409 SQASARLTVLWAEGLPGPPRNVR 431

Homo sapiens (taxid: 9606)

>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule OS=Mus musculus GN=Nrcam PE=1 SV=2

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I     + +GTY C + N  G A  EV L++  P R+   P    V      +F+C +
Sbjct: 504 LEIPVAQKDSTGTYTCVARNKLGMAKNEVHLEIKDPTRIIKQPEYAVVQRGSKVSFECRV 563

Query: 79  TPYDSGPYLIAWFKDGRQIPG----RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 134
               +    I W KD  ++P      T    LV++ V  +D G Y C A  +  D A  S
Sbjct: 564 KHDHTLIPTIMWLKDNGELPNDERFSTDKDHLVVSDVKDDDGGTYTCTANTT-LDSASAS 622

Query: 135 AELQL 139
           A L++
Sbjct: 623 AVLRV 627

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Mus musculus (taxid: 10090)

>sp|O94856|NFASC_HUMAN Neurofascin OS=Homo sapiens GN=NFASC PE=1 SV=4

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I+ +  ED G Y C ++NI G+A  +VRL+V  P R+   P         +   +C +
Sbjct: 486 LEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVARRGTTVQLECRV 545

Query: 79  TPYDSGPYLIAWFKDGRQI----PGRTSSTSLVINPVGREDRGIYQCIARRS-DGDVAQG 133
               S    ++W KD   +      +    SL I  V   D+G Y C+A    D D+A+ 
Sbjct: 546 KHDPSLKLTVSWLKDDEPLYIGNRMKKEDDSLTIFGVAERDQGSYTCVASTELDQDLAKA 605

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions.

Homo sapiens (taxid: 9606)

>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I     + +GTY C + N  G A  EV L++  P  +   P    V      +F+C++
Sbjct: 510 LEIPVAQKDSTGTYTCVARNKLGMAKNEVHLEIKDPTWIVKQPEYAVVQRGSMVSFECKV 569

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSST----SLVINPVGREDRGIYQCIA 123
               +    + W KD R++P     T     LV+  V  +D G Y C+A
Sbjct: 570 KHDHTLSLTVLWLKDNRELPSDERFTVDKDHLVVADVSDDDSGTYTCVA 618

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Homo sapiens (taxid: 9606)

>sp|Q6AZB0|BOC_MOUSE Brother of CDO OS=Mus musculus GN=Boc PE=1 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 14/141 (9%)

Query: 11  RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL---QVSTPYRVDVNPPLLSVH 67
           +TR L   L I+  + EDSGTYRC +SN  G+  A V L   QV  P  V V    L + 
Sbjct: 271 KTRFLLSNLLIDTTSEEDSGTYRCMASNGVGDPGAAVILYNVQVFEPPEVTVELSQLVIP 330

Query: 68  LDGSANFQCEITPYDSGPYLIAWFKDG-----RQIPGRTSSTSLVINPVGREDRGIYQCI 122
              SA   CE+    + P  + W ++       Q    +     V++ VG ED G+YQC+
Sbjct: 331 WGQSAKLTCEVR--GNPPPSVLWLRNAVPLTSSQRLRLSRRALRVVS-VGPEDEGVYQCM 387

Query: 123 ARRSDGDVAQGSAELQLGGTR 143
           A  +   V    A +QL   R
Sbjct: 388 AENA---VGSAHAVVQLRTAR 405

Component of a cell-surface receptor complex that mediates cell-cell interactions between muscle precursor cells. Promotes differentiation of myogenic cells.

Mus musculus (taxid: 10090)

>sp|P97685|NFASC_RAT Neurofascin OS=Rattus norvegicus GN=Nfasc PE=1 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I+ +  ED G Y C ++NI G+A  +VRL+V  P R+   P         +   +C +
Sbjct: 486 LEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAKRGTTVQLECRV 545

Query: 79  TPYDSGPYLIAWFKDGRQI----PGRTSSTSLVINPVGREDRGIYQCIARRS-DGDVAQG 133
               S    ++W KD   +      +    SL I  V   D+G Y C+A    D D+A+ 
Sbjct: 546 KHDPSLKLTVSWLKDDEPLYIGNRMKKEDDSLTIFGVAERDQGSYTCMASTELDQDLAKA 605

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions. Isoform 2/isoform 3 may be responsible for mediating and signaling axon-glial interaction during the early stages of myelination.

Rattus norvegicus (taxid: 10116)

>sp|Q810U3|NFASC_MOUSE Neurofascin OS=Mus musculus GN=Nfasc PE=1 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I+ +  ED G Y C ++NI G+A  +VRL+V  P R+   P         +   +C +
Sbjct: 486 LEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAKRGTTVQLECRV 545

Query: 79  TPYDSGPYLIAWFKDGRQI----PGRTSSTSLVINPVGREDRGIYQCIARRS-DGDVAQG 133
               S    ++W KD   +      +    SL I  V   D+G Y C+A    D D+A+ 
Sbjct: 546 KHDPSLKLTVSWLKDDEPLYIGNRMKKEDDSLTIFGVAERDQGSYTCMASTELDQDLAKA 605

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions.

Mus musculus (taxid: 10090)

>sp|P53767|VGFR1_RAT Vascular endothelial growth factor receptor 1 OS=Rattus norvegicus GN=Flt1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 19/139 (13%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLL-------SVHLDGS 71
           L I+ V+ EDSGTY C + NI    T E  L+ +     D+  PLL        V + GS
Sbjct: 621 LVIKNVSLEDSGTYACRARNI---YTGEEILRKTEVLVRDLEAPLLLQNLSDHEVSISGS 677

Query: 72  ANFQCEITPYDSGPYLIAWFKDGRQI---PGRT---SSTSLVINPVGREDRGIYQCIARR 125
               C+     +    I WFK+  +I   PG      +++L I  V  ED G+Y+C A  
Sbjct: 678 TTLDCQARGVPAPQ--ITWFKNNHKIQQEPGIILGPGNSTLFIERVTEEDEGVYRCRATN 735

Query: 126 SDGDVAQGSAELQLGGTRN 144
             G V + SA L + GT +
Sbjct: 736 QKG-VVESSAYLTVQGTSD 753

Tyrosine-protein kinase that acts as a cell-surface receptor for VEGFA, VEGFB and PGF, and plays an essential role in the development of embryonic vasculature, the regulation of angiogenesis, cell survival, cell migration, macrophage function, chemotaxis, and cancer cell invasion. May play an essential role as a negative regulator of embryonic angiogenesis by inhibiting excessive proliferation of endothelial cells. Can promote endothelial cell proliferation, survival and angiogenesis in adulthood. Its function in promoting cell proliferation seems to be cell-type specific. Promotes PGF-mediated proliferation of endothelial cells, and proliferation of some types of cancer cells, but does not promote proliferation of normal fibroblasts. Has very high affinity for VEGFA and relatively low protein kinase activity; may function as a negative regulator of VEGFA signaling by limiting the amount of free VEGFA and preventing its binding to KDR. Modulates KDR signaling by forming heterodimers with KDR. Ligand binding leads to the activation of several signaling cascades. Activation of PLCG1 leads to the production of the cellular signaling molecules diacylglycerol and inositol 1,4,5-trisphosphate and the activation of protein kinase C. Mediates phosphorylation of PIK3R1, the regulatory subunit of phosphatidylinositol 3-kinase, leading to the activation of phosphatidylinositol kinase and the downstream signaling pathway. Mediates activation of MAPK1/ERK2, MAPK3/ERK1 and the MAP kinase signaling pathway, as well as of the AKT1 signaling pathway. Phosphorylates PLCG1. Promotes phosphorylation of AKT1, PTK2/FAK1; YES1 and CBL.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
307201299	2051	Down syndrome cell adhesion molecule [Ha	0.926	0.067	0.645	6e-46
307169849	1609	Down syndrome cell adhesion molecule [Ca	0.926	0.086	0.638	2e-45
322800338	1441	hypothetical protein SINV_02508 [Solenop	0.953	0.099	0.627	2e-45
383854374	2032	PREDICTED: Down syndrome cell adhesion m	0.926	0.068	0.609	4e-45
92380877	1919	Dscam family member AbsCAM-Ig7A [Apis me	0.926	0.072	0.617	6e-45
147907437	1886	Dscam family member AbsCAM [Apis mellife	0.926	0.073	0.617	6e-45
380011235	1924	PREDICTED: Down syndrome cell adhesion m	0.926	0.072	0.617	6e-45
112732546	1923	cell adhesion molecule AbsCAM-Ig7B [Apis	0.926	0.072	0.617	6e-45
340714858	1965	PREDICTED: Down syndrome cell adhesion m	0.926	0.070	0.602	1e-44
350402059	1965	PREDICTED: Down syndrome cell adhesion m	0.926	0.070	0.602	1e-44

>gi|307201299|gb|EFN81146.1| Down syndrome cell adhesion molecule [Harpegnathos saltator]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 112/141 (79%), Gaps = 2/141 (1%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           EP+LVL GPRTR+LG +LAIE VT EDSG YRCS+SN GGEA+AE+RL V+ P  V+V P
Sbjct: 256 EPMLVLSGPRTRLLGSVLAIEAVTLEDSGVYRCSASNPGGEASAEIRLIVTAPLHVEVTP 315

Query: 62  PLLSVHLDGSANFQCEI-TPYDSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIY 119
           PLLSVHL G+A F+CE+ T   +GP+ I W+KDGRQ+PG    + L+ +N +GREDRG+Y
Sbjct: 316 PLLSVHLGGNAEFRCEVGTHPQAGPHFITWYKDGRQLPGTGRQSELLRLNGIGREDRGMY 375

Query: 120 QCIARRSDGDVAQGSAELQLG 140
           QCI RRS+GD AQ SAELQLG
Sbjct: 376 QCIVRRSEGDTAQASAELQLG 396

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169849|gb|EFN62358.1| Down syndrome cell adhesion molecule [Camponotus floridanus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 112/141 (79%), Gaps = 2/141 (1%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           EP+LVL GPRTR+LG +LAIE VT EDSG YRCS+SN GGEA+AE+RL V+ P  V+V P
Sbjct: 251 EPMLVLSGPRTRLLGSVLAIEAVTLEDSGVYRCSASNPGGEASAEIRLIVTAPLHVEVTP 310

Query: 62  PLLSVHLDGSANFQCEI-TPYDSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIY 119
           PLLSVHL G+A F+CE+ T   +GP+ I W+KDGRQ+PG    + L+ +N +GR+DRG+Y
Sbjct: 311 PLLSVHLGGNAEFRCEVGTHPQAGPHFITWYKDGRQLPGSGRQSELLRLNGIGRDDRGMY 370

Query: 120 QCIARRSDGDVAQGSAELQLG 140
           QCI RRS+GD AQ SAELQLG
Sbjct: 371 QCIVRRSEGDTAQASAELQLG 391

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800338|gb|EFZ21342.1| hypothetical protein SINV_02508 [Solenopsis invicta]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 113/145 (77%), Gaps = 2/145 (1%)

Query: 4   LLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL 63
           +LVL GPRTR+LG +LAIE VT EDSG YRCS+SN GGEA+AE+RL V+ P  V+V PPL
Sbjct: 1   MLVLSGPRTRLLGSVLAIEAVTLEDSGVYRCSASNPGGEASAEIRLIVTAPLHVEVTPPL 60

Query: 64  LSVHLDGSANFQCEI-TPYDSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIYQC 121
           LSVHL G+A F+CE+ T   +GP+ I W+KDGRQ+PG    + L+ +N +GREDRG+YQC
Sbjct: 61  LSVHLGGNAEFRCEVGTHPQAGPHFITWYKDGRQLPGSGRQSELLKLNGIGREDRGMYQC 120

Query: 122 IARRSDGDVAQGSAELQLGGTRNIK 146
           I RRS+GD AQ SAELQLGG   I+
Sbjct: 121 IVRRSEGDTAQASAELQLGGLPYIR 145

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854374|ref|XP_003702696.1| PREDICTED: Down syndrome cell adhesion molecule-like protein Dscam2-like [Megachile rotundata]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 113/141 (80%), Gaps = 2/141 (1%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           EP+LVL GPRTR+LG +LA+E VT EDSG YRCS++N GGEA+AE+RL V+ P  V+V P
Sbjct: 386 EPMLVLSGPRTRLLGTVLALEAVTLEDSGIYRCSAANPGGEASAEIRLIVTAPLHVEVTP 445

Query: 62  PLLSVHLDGSANFQCEITPY-DSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIY 119
           PLLSVHL G+A F+CE++ +  +GP+ + W+KDGRQ+PG    + L+ +N +GREDRG+Y
Sbjct: 446 PLLSVHLGGNAEFRCEVSTHPQAGPHFVTWYKDGRQLPGTGRQSELLRLNGIGREDRGMY 505

Query: 120 QCIARRSDGDVAQGSAELQLG 140
           QCI RR++GD AQ SAELQLG
Sbjct: 506 QCIVRRAEGDTAQASAELQLG 526

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|92380877|dbj|BAE93381.1| Dscam family member AbsCAM-Ig7A [Apis mellifera]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 112/141 (79%), Gaps = 2/141 (1%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           EP+LVL GPRTR+LG +LA+E VT ED+G YRCS+SN GGEA+AE+RL V+ P  V+V P
Sbjct: 278 EPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVTP 337

Query: 62  PLLSVHLDGSANFQCEITPY-DSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIY 119
           PLLSVHL G+A F+CE++ +  +GP+ I W+KDGRQ+PG    + L+ +N + REDRG+Y
Sbjct: 338 PLLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQLPGTGRQSELLRLNGINREDRGMY 397

Query: 120 QCIARRSDGDVAQGSAELQLG 140
           QCI RRS+GD AQ SAELQLG
Sbjct: 398 QCIVRRSEGDTAQASAELQLG 418

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|147907437|ref|NP_001035325.2| Dscam family member AbsCAM [Apis mellifera]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 112/141 (79%), Gaps = 2/141 (1%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           EP+LVL GPRTR+LG +LA+E VT ED+G YRCS+SN GGEA+AE+RL V+ P  V+V P
Sbjct: 245 EPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVTP 304

Query: 62  PLLSVHLDGSANFQCEITPY-DSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIY 119
           PLLSVHL G+A F+CE++ +  +GP+ I W+KDGRQ+PG    + L+ +N + REDRG+Y
Sbjct: 305 PLLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQLPGTGRQSELLRLNGINREDRGMY 364

Query: 120 QCIARRSDGDVAQGSAELQLG 140
           QCI RRS+GD AQ SAELQLG
Sbjct: 365 QCIVRRSEGDTAQASAELQLG 385

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011235|ref|XP_003689716.1| PREDICTED: Down syndrome cell adhesion molecule-like protein Dscam2-like [Apis florea]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 112/141 (79%), Gaps = 2/141 (1%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           EP+LVL GPRTR+LG +LA+E VT ED+G YRCS+SN GGEA+AE+RL V+ P  V+V P
Sbjct: 278 EPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVTP 337

Query: 62  PLLSVHLDGSANFQCEITPY-DSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIY 119
           PLLSVHL G+A F+CE++ +  +GP+ I W+KDGRQ+PG    + L+ +N + REDRG+Y
Sbjct: 338 PLLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQLPGTGRQSELLKLNGINREDRGMY 397

Query: 120 QCIARRSDGDVAQGSAELQLG 140
           QCI RRS+GD AQ SAELQLG
Sbjct: 398 QCIVRRSEGDTAQASAELQLG 418

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112732546|dbj|BAF03050.1| cell adhesion molecule AbsCAM-Ig7B [Apis mellifera]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 112/141 (79%), Gaps = 2/141 (1%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           EP+LVL GPRTR+LG +LA+E VT ED+G YRCS+SN GGEA+AE+RL V+ P  V+V P
Sbjct: 278 EPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVTP 337

Query: 62  PLLSVHLDGSANFQCEITPY-DSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIY 119
           PLLSVHL G+A F+CE++ +  +GP+ I W+KDGRQ+PG    + L+ +N + REDRG+Y
Sbjct: 338 PLLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQLPGTGRQSELLRLNGINREDRGMY 397

Query: 120 QCIARRSDGDVAQGSAELQLG 140
           QCI RRS+GD AQ SAELQLG
Sbjct: 398 QCIVRRSEGDTAQASAELQLG 418

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714858|ref|XP_003395940.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus terrestris]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 112/141 (79%), Gaps = 2/141 (1%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           EP+LVL GPRTR+LG +LA+E VT EDSG YRCS+SN GGEA+AE+RL V+ P  ++V P
Sbjct: 314 EPMLVLSGPRTRLLGSVLALEAVTLEDSGIYRCSASNPGGEASAEIRLIVTAPLHIEVTP 373

Query: 62  PLLSVHLDGSANFQCEITPY-DSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIY 119
           PLLSVHL G+A F+CE++ +  +GP+ + W+KDGRQ+PG    + L+ +N + REDRG+Y
Sbjct: 374 PLLSVHLGGNAEFRCEVSTHPQAGPHFVTWYKDGRQLPGSGRQSELLRLNGISREDRGMY 433

Query: 120 QCIARRSDGDVAQGSAELQLG 140
           QCI RR++GD AQ SAELQLG
Sbjct: 434 QCIVRRAEGDTAQASAELQLG 454

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402059|ref|XP_003486354.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus impatiens]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 112/141 (79%), Gaps = 2/141 (1%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           EP+LVL GPRTR+LG +LA+E VT EDSG YRCS+SN GGEA+AE+RL V+ P  ++V P
Sbjct: 314 EPMLVLSGPRTRLLGSVLALEAVTLEDSGIYRCSASNPGGEASAEIRLIVTAPLHIEVTP 373

Query: 62  PLLSVHLDGSANFQCEITPY-DSGPYLIAWFKDGRQIPGRTSSTSLV-INPVGREDRGIY 119
           PLLSVHL G+A F+CE++ +  +GP+ + W+KDGRQ+PG    + L+ +N + REDRG+Y
Sbjct: 374 PLLSVHLGGNAEFRCEVSTHPQAGPHFVTWYKDGRQLPGSGRQSELLRLNGISREDRGMY 433

Query: 120 QCIARRSDGDVAQGSAELQLG 140
           QCI RR++GD AQ SAELQLG
Sbjct: 434 QCIVRRAEGDTAQASAELQLG 454

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.86	0.063	0.376	1.5e-14
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.906	0.066	0.335	2.6e-12
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.84	0.065	0.348	4e-12
UNIPROTKB|H0YNQ1	535	IGDCC3 "Immunoglobulin superfa	0.813	0.228	0.335	4.4e-10
UNIPROTKB|Q8IVU1	814	IGDCC3 "Immunoglobulin superfa	0.813	0.149	0.335	8.2e-10
UNIPROTKB|F1SJL0	802	IGDCC3 "Uncharacterized protei	0.813	0.152	0.328	2.2e-09
MGI|MGI:2151153	1110	Boc "biregional cell adhesion	0.773	0.104	0.344	3.3e-09
RGD|1564772	5548	Hmcn1 "hemicentin 1" [Rattus n	0.833	0.022	0.323	7.2e-09
ZFIN|ZDB-GENE-080229-6	1369	nfasca "neurofascin homolog (c	0.773	0.084	0.354	1.4e-08
UNIPROTKB|E1BB93	1115	BOC "Uncharacterized protein"	0.853	0.114	0.328	1.4e-08

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 202 (76.2 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 52/138 (37%), Positives = 74/138 (53%)

Query:     6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVSTPYRVDVNPPLL 64
             V+   R + +   L I+    EDSG Y C  +N +GGE+   V L V+ P    ++PP  
Sbjct:   295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV-LTVTAPLSAKIDPPTQ 353

Query:    65 SVHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
             +V     A F C+   Y   P   ++W KDG+ I G  S   L I  V +ED+G+YQC  
Sbjct:   354 TVDFGRPAVFTCQ---YTGNPIKTVSWMKDGKAI-GH-SEPVLRIESVKKEDKGMYQCFV 408

Query:   124 RRSDGDVAQGSAELQLGG 141
             R +D + A+ SAEL+LGG
Sbjct:   409 R-NDQESAEASAELKLGG 425

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 51/152 (33%), Positives = 75/152 (49%)

Query:     4 LLVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
             L  +P  +  +L   +L I+     D+G + C +SN  GE   E+RL V++   V + P 
Sbjct:   289 LYPIPSSQRVILSRTLLLIKNADERDAGKWICQASNQFGEQRIEIRLSVNSYVSVHILPQ 348

Query:    63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP-------GRT-----SSTSLVINP 110
             +  V+  G+ANF C  T   S    I W  +G+ +        GR      S +SL++  
Sbjct:   349 VQIVNSGGTANFNCTTT--GSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKSSLLVQN 406

Query:   111 VGREDRGIYQCIARRSDGDVAQGSAELQLGGT 142
             VGR DRG+YQC+        AQ  AEL+LG T
Sbjct:   407 VGRRDRGVYQCLVENQRAS-AQAMAELKLGDT 437

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 47/135 (34%), Positives = 68/135 (50%)

Query:    12 TRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
             T V   +L I     EDSG Y C  +N  GE T +V L V+ P    + P + +V +D  
Sbjct:   287 TIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQVSLTVTAPLTAHLQPQVQTVDVDKD 346

Query:    72 ANFQCEITPYDSGPYLIAWFKDGRQI--PGR----TSSTSLVINPVGREDRGIYQCIARR 125
             A FQC ++ +    + + W  DG+ I    R    T    L+I  V +ED G+YQC    
Sbjct:   347 AQFQCIVSGHPV--HDVNWLHDGKPILRDNRVEILTDPPRLIIKKVQKEDPGMYQCFVS- 403

Query:   126 SDGDVAQGSAELQLG 140
             ++ +  Q +AELQLG
Sbjct:   404 NEWEQIQSTAELQLG 418

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

UNIPROTKB|H0YNQ1 IGDCC3 "Immunoglobulin superfamily DCC subclass member 3" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 45/134 (33%), Positives = 70/134 (52%)

Query:    13 RVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVDVNPPLLSVHLD 69
             +VLG   L I  VT + SG Y C+++  G     TA+ RL V  P     +P  +S    
Sbjct:   148 QVLGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVVQAPAEFVQHPQSISRPAG 207

Query:    70 GSANFQCEITPYDSGPYLIAWFKDGRQI-PG-----RTSSTSLVINPVGREDRGIYQCIA 123
              +A F C+    +  P+ + W K+G+ + PG     + ++++L I+ +G ED  IYQC+A
Sbjct:   208 TTAMFTCQAQG-EPPPH-VTWLKNGQVLGPGGHVRLKNNNSTLTISGIGPEDEAIYQCVA 265

Query:   124 RRSDGDVAQGSAEL 137
               S G  +Q SA L
Sbjct:   266 ENSAGS-SQASARL 278

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

UNIPROTKB|Q8IVU1 IGDCC3 "Immunoglobulin superfamily DCC subclass member 3" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 8.2e-10, P = 8.2e-10
 Identities = 45/134 (33%), Positives = 70/134 (52%)

Query:    13 RVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVDVNPPLLSVHLD 69
             +VLG   L I  VT + SG Y C+++  G     TA+ RL V  P     +P  +S    
Sbjct:   285 QVLGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVVQAPAEFVQHPQSISRPAG 344

Query:    70 GSANFQCEITPYDSGPYLIAWFKDGRQI-PG-----RTSSTSLVINPVGREDRGIYQCIA 123
              +A F C+    +  P+ + W K+G+ + PG     + ++++L I+ +G ED  IYQC+A
Sbjct:   345 TTAMFTCQAQG-EPPPH-VTWLKNGQVLGPGGHVRLKNNNSTLTISGIGPEDEAIYQCVA 402

Query:   124 RRSDGDVAQGSAEL 137
               S G  +Q SA L
Sbjct:   403 ENSAGS-SQASARL 415

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

UNIPROTKB|F1SJL0 IGDCC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 44/134 (32%), Positives = 70/134 (52%)

Query:    13 RVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVDVNPPLLSVHLD 69
             +VLG   L I  V+ + SG Y C+++  G     TA+ RL V  P     +P  +S    
Sbjct:   284 QVLGTGNLIISDVSVQHSGVYVCAANRPGTRVRRTAQGRLVVQAPAEFVQHPQSISRPAG 343

Query:    70 GSANFQCEITPYDSGPYLIAWFKDGRQI-PG-----RTSSTSLVINPVGREDRGIYQCIA 123
              +A F C+    +  P+ + W K+G+ + PG     + ++++L I+ +G ED  IYQC+A
Sbjct:   344 TTAMFTCQAQG-EPPPH-VTWLKNGQVLGPGGHVRLKNNNSTLTISGIGPEDEAIYQCVA 401

Query:   124 RRSDGDVAQGSAEL 137
               S G  +Q SA L
Sbjct:   402 ENSAGS-SQASARL 414

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

MGI|MGI:2151153 Boc "biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 43/125 (34%), Positives = 61/125 (48%)

Query:    11 RTRVLGPILAIEGVTAEDSGTYRCSSSN-IG--GEATAEVRLQVSTPYRVDVNPPLLSVH 67
             +TR L   L I+  + EDSGTYRC +SN +G  G A     +QV  P  V V    L + 
Sbjct:   271 KTRFLLSNLLIDTTSEEDSGTYRCMASNGVGDPGAAVILYNVQVFEPPEVTVELSQLVIP 330

Query:    68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPG----RTSSTSLVINPVGREDRGIYQCIA 123
                SA   CE+    + P  + W ++   +      R S  +L +  VG ED G+YQC+A
Sbjct:   331 WGQSAKLTCEVR--GNPPPSVLWLRNAVPLTSSQRLRLSRRALRVVSVGPEDEGVYQCMA 388

Query:   124 RRSDG 128
               + G
Sbjct:   389 ENAVG 393

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IDA

GO:0007411 "axon guidance" evidence=ISO;IMP

GO:0009986 "cell surface" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016202 "regulation of striated muscle tissue development" evidence=ISO

GO:0016337 "cell-cell adhesion" evidence=TAS

GO:0030030 "cell projection organization" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045663 "positive regulation of myoblast differentiation" evidence=IMP

RGD|1564772 Hmcn1 "hemicentin 1" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 44/136 (32%), Positives = 66/136 (48%)

Query:     2 EPLLVLPGP-RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN 60
             +P+   PG  R +  G +L I     ED+G Y C ++N  GEA    +L V  P  +D  
Sbjct:  1776 QPVNTAPGNLRIQSSGRVLQIAKALLEDAGRYTCVATNAAGEAHQHTQLHVHEPPSLDDG 1835

Query:    61 PPLL--SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV---INPVGR-- 113
               +L  SV ++     +C+ T   S   ++ W+KD   + G TS+T L    I  +G   
Sbjct:  1836 GKMLNESVVVNNPIQLECKAT--GSPVPVLTWYKDSHPLAGSTSATFLKRGQILEIGSAQ 1893

Query:   114 -EDRGIYQCIARRSDG 128
               D GIY+C+A  S G
Sbjct:  1894 ISDAGIYKCVAINSAG 1909

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-080229-6 nfasca "neurofascin homolog (chicken) a" [Danio rerio (taxid:7955)]

 Score = 144 (55.7 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 45/127 (35%), Positives = 58/127 (45%)

Query:    19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA-NFQCE 77
             L I+    ED GTY C +SNI G+   +VRL+V  P R+ V  P       G+   F C 
Sbjct:   485 LEIKQARTEDQGTYTCVASNILGKMENQVRLEVKEPTRI-VRAPEHKTEPRGTTVRFDCR 543

Query:    78 ITPYDSGPYLIAWFKDGRQIP----GRTSST--SLVINPVGREDRGIYQCIARRS-DGDV 130
             +    S P  + W KD + +     GR      SL I  V  +D G Y C A+   D D 
Sbjct:   544 VKHDPSLPATVTWLKDEKPLSFSWIGRLKKDDESLTIYNVNPDDGGTYTCTAKTEIDEDT 603

Query:   131 AQGSAEL 137
             A  SA L
Sbjct:   604 A--SARL 608

GO:0019226 "transmission of nerve impulse" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

UNIPROTKB|E1BB93 BOC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 46/140 (32%), Positives = 65/140 (46%)

Query:    11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL---QVSTPYRVDVNPPLLSVH 67
             +TR L   L I+    EDSGTYRC + N  GE  A V L   QV  P  V +    L + 
Sbjct:   276 KTRFLLSNLLIDTTNEEDSGTYRCMADNGVGEPGAAVILYNVQVFEPPEVTMELSQLVIP 335

Query:    68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPG----RTSSTSLVINPVGREDRGIYQCIA 123
                SA   CE+    + P  + W ++   +      R S  +L +  +G ED G+YQC+A
Sbjct:   336 WGQSAKLTCEVR--GNPPPSVLWLRNAVPLTSSQRLRLSHRALRVVSMGPEDEGVYQCMA 393

Query:   124 RRSDGDVAQGSAELQLGGTR 143
                + +V    A +QL   R
Sbjct:   394 ---ENEVGSAHAVVQLKTAR 410

GO:0045663 "positive regulation of myoblast differentiation" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	150
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-08
smart00409	85	smart00409, IG, Immunoglobulin	2e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-08
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	6e-08
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-06
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-06
smart00409	85	smart00409, IG, Immunoglobulin	3e-06
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	4e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	5e-05
PHA02826	227	PHA02826, PHA02826, IL-1 receptor-like protein; Pr	4e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	8e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	9e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.001
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	0.002
cd05771	139	cd05771, IgC_Tapasin_R, Tapasin-R immunoglobulin-l	0.002
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	0.003

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPV 111
           PP ++V    S    CE +   S P  + W+K G ++             S+++L I+ V
Sbjct: 1   PPSVTVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNV 58

Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQ 138
             ED G Y C A  S G        L 
Sbjct: 59  TPEDSGTYTCAATNSSGSA-SSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPV 111
           PP ++V    S    CE +   S P  + W+K G ++             S+++L I+ V
Sbjct: 1   PPSVTVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNV 58

Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQ 138
             ED G Y C A  S G        L 
Sbjct: 59  TPEDSGTYTCAATNSSGSA-SSGTTLT 84

Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 69  DGSANFQCEITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIAR 124
             S    C           I W KDG+ +P       S ++L I  V  ED G+Y C+A 
Sbjct: 2   GQSVTLTCPAEGNPV--PNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAE 59

Query: 125 RSDG 128
            S G
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 47.2 bits (113), Expect = 6e-08
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 15/85 (17%)

Query: 64  LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG--------RTSSTSLVINPVGR 113
           + V    SA F C +T  P       ++WFKDG+ +             + +L I+ V  
Sbjct: 10  VEVQEGESARFTCTVTGDP----DPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQP 65

Query: 114 EDRGIYQCIARRSDGDVAQGSAELQ 138
           +D G Y C+A  S G+ A+ SAEL 
Sbjct: 66  DDEGKYTCVATNSAGE-AEASAELT 89

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L I  V  +D G Y C ++N  GEA A   L V
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 42.9 bits (100), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 72  ANFQCEITPYDSGPYLIAWFKDGRQIPGR------------TSSTSLVINPVGREDRGIY 119
               C  +     P  I W K+G+ +P              + S++L I+ V  ED G Y
Sbjct: 1   VTLTCLASGPP--PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58

Query: 120 QCIARRSDGDV 130
            C+A  S G V
Sbjct: 59  TCVASNSAGTV 69

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 5  LVLPGPRTRVLGP----ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L+    R  V        L I  VT EDSGTY C+++N  G A++   L V
Sbjct: 35 LLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 5  LVLPGPRTRVLGP----ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L+    R  V        L I  VT EDSGTY C+++N  G A++   L V
Sbjct: 35 LLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 42.0 bits (98), Expect = 4e-06
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDR 116
            P  SV   G     C        P  I+W+++G    G     +S ++L ++ V  ED 
Sbjct: 7   SPSPSVTSGGGVTLTCSAEGG-PPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDS 65

Query: 117 GIYQCIAR 124
           G Y C+A 
Sbjct: 66  GTYTCVAS 73

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 7  LPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          LP  R  +L    L I  VTA D G+Y C + N+ G+  A   L V
Sbjct: 24 LPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|165173 PHA02826, PHA02826, IL-1 receptor-like protein; Provisional

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 17/113 (15%)

Query: 19  LAIEGVTAEDSGTYRC--SSSNIGGEATAEVRLQV-STPYRVDVNPPL-LSVHLDGSANF 74
           L I  V   D G Y C  SS NI  E+T  +RL   S       N      +H  G+   
Sbjct: 100 LWIGNVINIDEGIYICTISSGNICEEST--IRLTFDSGTINYQFNSGKDSKLHCYGTDGI 157

Query: 75  QCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQC 121
               + +    Y + W+K+G  +        R ++++LVI     +D GIY C
Sbjct: 158 S---STFKD--YTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTC 205

Length = 227

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 18/78 (23%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
           P    V         C      + P    W+KDG  +   +S        V  ED G Y 
Sbjct: 6   PSPTVVFEGEDVTLTCSAP--GNPPPNYTWYKDGVPLS--SSQNGFFTPNVSAEDSGTYT 61

Query: 121 CIARRSDGDVAQGSAELQ 138
           C+A    G        L 
Sbjct: 62  CVASNGGGGKTSNPVTLT 79

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 7  LPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSNIGGEAT 44
          LP  RT+       L I+ V+ ED G YRC++SN  G A 
Sbjct: 24 LPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 35.9 bits (82), Expect = 9e-04
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVR 48
          L I  VT EDSGTY C +SN  G  +A V 
Sbjct: 45 LTISNVTLEDSGTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 70  GSANFQCEITPYDSGPYLIAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQ 120
            S    C ++          WFK+G+ +           R SS +L I+ V  ED G Y 
Sbjct: 2   SSVTLTCSVSGPPQVDVT--WFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59

Query: 121 CIA 123
           C+ 
Sbjct: 60  CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 88  IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRS 126
             W+KDG+ I G+ S  SL I  V     G Y  +   S
Sbjct: 15  FQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNS 53

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143248 cd05771, IgC_Tapasin_R, Tapasin-R immunoglobulin-like domain

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L + G+T  D GTY CS S    +A   ++L VS P RV ++   L   ++      C I
Sbjct: 3   LTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHI 62

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
             Y      + W    R+ PG +     + N
Sbjct: 63  AGYYPLDVQVEWT---REPPGDSPPPVSLSN 90

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. Length = 139

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          G +L I  +  ED GTY C + NI G+ T + R+ V
Sbjct: 52 GAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG3513|consensus	1051		99.88
KOG3513|consensus	1051		99.87
KOG4194|consensus	873		99.8
PHA02826	227	IL-1 receptor-like protein; Provisional	99.77
KOG4194|consensus	873		99.72
PHA02785	326	IL-beta-binding protein; Provisional	99.72
KOG4221|consensus	1381		99.72
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.7
KOG4222|consensus	1281		99.7
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.68
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.66
KOG4221|consensus	1381		99.64
PHA02785	326	IL-beta-binding protein; Provisional	99.63
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.61
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.6
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.58
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.58
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.58
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.57
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.56
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.56
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.54
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.54
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.54
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.53
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.53
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.52
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.52
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.52
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.51
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.51
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.51
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.5
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.5
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.5
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.5
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.5
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.49
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.49
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.49
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.48
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.48
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.47
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.47
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.47
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.47
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.46
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.46
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.46
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.46
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.46
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.45
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.45
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.45
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.45
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.44
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.44
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.44
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.44
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.42
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.42
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.42
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.42
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.42
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.41
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.41
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.41
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.41
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.4
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.38
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.38
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.37
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.37
KOG4222|consensus	1281		99.34
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.34
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.33
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.33
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.32
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.32
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.31
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.31
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.3
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.3
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.29
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.28
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.27
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.27
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.27
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.26
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.25
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.25
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.25
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.25
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.23
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.2
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.2
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.19
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.13
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.13
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.1
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.08
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.08
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.07
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.05
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.04
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.02
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.98
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.98
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.97
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.97
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.96
smart00409	86	IG Immunoglobulin.	98.96
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.96
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.94
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.93
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.93
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.9
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.9
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.9
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.88
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.88
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.88
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.86
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.86
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.86
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.86
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.85
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.84
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.83
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.83
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.82
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.81
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.81
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.8
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.8
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.8
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.79
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.76
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.73
PHA02826	227	IL-1 receptor-like protein; Provisional	98.72
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.72
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.71
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.69
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.69
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.69
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.69
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.68
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.66
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.66
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.66
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.65
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.64
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.63
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.63
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.63
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.62
PHA03376	221	BARF1; Provisional	98.62
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.62
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.62
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.62
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.61
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.6
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.6
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.59
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.59
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.59
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.59
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.58
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.58
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.57
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.57
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.57
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.56
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.56
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.55
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.55
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.54
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.53
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.53
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.52
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.52
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.52
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.52
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.52
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.52
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.5
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.49
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.49
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.48
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.48
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.47
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.47
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.46
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.46
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.44
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.43
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.43
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.42
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.41
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.38
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.38
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.38
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.37
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.37
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.37
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.37
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.36
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.36
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.36
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.36
PHA02633	63	hypothetical protein; Provisional	98.35
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.34
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.34
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.34
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.33
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.32
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.32
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.32
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.31
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.3
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.29
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.28
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.26
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.26
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.25
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.25
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.25
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.24
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.24
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.24
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.23
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.22
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.21
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.21
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.19
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.19
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.18
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.18
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.17
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.16
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.16
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.14
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.12
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.11
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.09
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.08
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.08
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.06
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.06
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.06
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.04
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.03
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.01
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.99
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.98
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.98
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	97.98
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.98
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.97
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.97
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.97
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.96
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.96
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	97.94
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.94
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.92
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.92
smart00409	86	IG Immunoglobulin.	97.92
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.88
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.87
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.86
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.83
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.77
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.75
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.73
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.73
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.71
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.7
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.7
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.66
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.64
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.63
KOG3515|consensus	741		97.63
smart00407	75	IGc1 Immunoglobulin C-Type.	97.54
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.53
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.52
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.52
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.49
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.45
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.43
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.32
PHA02633	63	hypothetical protein; Provisional	97.31
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.28
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.28
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.26
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.25
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.24
PHA03269	566	envelope glycoprotein C; Provisional	97.23
PHA03273	486	envelope glycoprotein C; Provisional	97.22
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.17
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.14
smart00406	81	IGv Immunoglobulin V-Type.	97.12
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.12
PHA03270	466	envelope glycoprotein C; Provisional	97.1
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.1
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.1
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.07
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.06
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.03
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.01
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.0
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.99
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.97
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	96.96
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.93
smart00406	81	IGv Immunoglobulin V-Type.	96.91
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.88
PHA03376	221	BARF1; Provisional	96.88
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.84
KOG3515|consensus	741		96.83
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.82
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.82
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.79
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.69
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.62
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.58
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.46
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.42
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.42
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.33
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.31
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.3
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.21
KOG1480|consensus	909		96.19
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.16
PHA03271	490	envelope glycoprotein C; Provisional	96.09
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	96.05
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.04
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	96.03
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	95.99
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	95.97
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.86
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	95.74
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	95.73
PHA03042	286	CD47-like protein; Provisional	95.66
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	95.44
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.29
PHA03052	69	Hypothetical protein; Provisional	95.25
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	94.93
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	94.89
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.57
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	94.3
PHA02982	251	hypothetical protein; Provisional	93.96
PHA02914	500	Immunoglobulin-like domain protein; Provisional	93.72
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	93.07
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	92.27
PHA03283	542	envelope glycoprotein E; Provisional	90.81
KOG4597|consensus	560		89.45
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	89.11
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	88.7
PHA03282	540	envelope glycoprotein E; Provisional	88.22
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	87.19
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	86.16
PF01688	161	Herpes_gI: Alphaherpesvirus glycoprotein I; InterP	85.92
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	80.71

>KOG3513|consensus

Probab=99.88  E-value=3.4e-21  Score=139.78  Aligned_cols=135  Identities=26%  Similarity=0.432  Sum_probs=116.2

Q ss_pred             CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC-ceEEeCCCc--EEEecCCcEEEEEEec-CCCCC
Q psy11131          9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP-YRVDVNPPL--LSVHLDGSANFQCEIT-PYDSG   84 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~-~~~~~~~~~--~~~~~g~~~~l~C~~~-~p~~~   84 (150)
                      ++++.+..+.|.|.++..+|+|.|+|.+.|.+|...+.+.|.|.+. |.+...+..  ..+..|..+.|.|... .|   
T Consensus       378 ~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP---  454 (1051)
T KOG3513|consen  378 DPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASP---  454 (1051)
T ss_pred             CcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCC---
Confidence            3458888899999999999999999999999999999999999975 566655543  4677899999999999 99   


Q ss_pred             CcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcccc
Q psy11131         85 PYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKH  147 (150)
Q Consensus        85 ~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~~  147 (150)
                      .+.+.|.+.+..+....+     ...|.|.+++.+|.|.|+|.|.|.+| ....+..|.|.+++.++.
T Consensus       455 ~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G-~a~~~~~L~Vkd~tri~~  521 (1051)
T KOG3513|consen  455 KPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLG-KAESTGNLIVKDATRITL  521 (1051)
T ss_pred             cceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccC-ccceEEEEEEecCceEEe
Confidence            999999998774444433     67999999999999999999999999 789999999988876653

>KOG3513|consensus

Probab=99.87  E-value=7.4e-21  Score=138.05  Aligned_cols=125  Identities=26%  Similarity=0.457  Sum_probs=115.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      ..|.|.|+...|.|.|.|.+.|..|.......|+|.++|.+...+....+..|+.+.+.|.+. .|   .|.+.|.+++.
T Consensus       294 ~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P---~p~v~WlkNg~  370 (1051)
T KOG3513|consen  294 KVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKP---NPTVKWLKNGE  370 (1051)
T ss_pred             cEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCC---CCceEEeeCCe
Confidence            789999999999999999999999999999999999999998888889999999999999999 99   99999999998


Q ss_pred             ccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         96 QIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        96 ~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .+....+       ...|.|.++...|+|.|.|.+.|..| .....+.|.|.+.+|.
T Consensus       371 pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G-~i~anA~L~V~a~~P~  426 (1051)
T KOG3513|consen  371 PLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYG-TIYANAELKVLASAPV  426 (1051)
T ss_pred             ecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccc-eEeeeeEEEEEccCCC
Confidence            8764433       67999999999999999999999999 7889999999887554

>KOG4194|consensus

Probab=99.80  E-value=1.4e-18  Score=120.04  Aligned_cols=125  Identities=30%  Similarity=0.473  Sum_probs=109.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~   94 (150)
                      +.|++.||+..|.|.|+|.+.|..|+. +..++|+|...|.+...|....+..|+...+.|.+. .|   .|.+.|.++|
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P---~PeIawqkdg  650 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHP---RPEIAWQKDG  650 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCC---CcceeehhcC
Confidence            679999999999999999999998874 567899999999999999999999999999999999 99   9999999987


Q ss_pred             cc-cCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         95 RQ-IPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        95 ~~-~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .. .+....        ...+.|.++..+|.|.|+|.++|.+| ..+..+.+.|.+.|..
T Consensus       651 gtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG-~isanAtL~V~e~p~f  709 (873)
T KOG4194|consen  651 GTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAG-QISANATLTVLETPSF  709 (873)
T ss_pred             CCCCchhhhheeeecCCCCEEEEecccccccceeEEeeecccc-ceeeceEEEEecCCcc
Confidence            65 322211        56889999999999999999999999 6889999999887643

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.77  E-value=3e-17  Score=103.91  Aligned_cols=106  Identities=24%  Similarity=0.377  Sum_probs=84.0

Q ss_pred             CCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CC--CCCCcEEEEee
Q psy11131         16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PY--DSGPYLIAWFK   92 (150)
Q Consensus        16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p--~~~~~~~~w~~   92 (150)
                      +++|.|.+++.+|+|.|.|.+.|..+.......|.|..+      +....+.+|+.+.|.|.+. .+  ..-.|.+.|++
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK  170 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK  170 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEE
Confidence            368999999999999999999998777777788888542      2234567899999999975 31  00168999999


Q ss_pred             cCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         93 DGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        93 ~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ++..+.....      ...|.|.++..+|+|.|.|.+....
T Consensus       171 ng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        171 NGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             CCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            9988764432      3579999999999999999998653

>KOG4194|consensus

Probab=99.72  E-value=2e-16  Score=109.59  Aligned_cols=122  Identities=24%  Similarity=0.340  Sum_probs=100.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      .-+.|.|++.+|+|.|+|.+.|..|..++.+.|+|.+.|.+...-....+..|+++.+.|.+. .|.  .|+..|++.++
T Consensus       669 d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a--~pr~~W~k~d~  746 (873)
T KOG4194|consen  669 DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPA--DPRLEWFKEDK  746 (873)
T ss_pred             CEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCC--CccccccCCCC
Confidence            668899999999999999999999999999999999988777666677889999999999999 661  39999999887


Q ss_pred             ccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         96 QIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        96 ~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      .+-...+      .--+.+.....+|.|.|+|...+..| .....+.+.+..
T Consensus       747 pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~-~~~~~i~l~~~~  797 (873)
T KOG4194|consen  747 PILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLG-TERIHICLLVYQ  797 (873)
T ss_pred             ceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeecc-ceeeEEEEEEee
Confidence            7643332      45677888889999999999999988 444444444433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.72  E-value=1.4e-15  Score=101.65  Aligned_cols=119  Identities=24%  Similarity=0.362  Sum_probs=87.2

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCccee----EEEEEEEec--CceEEeCCCcEEEecCCcEEEEEEec-CC
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEAT----AEVRLQVST--PYRVDVNPPLLSVHLDGSANFQCEIT-PY   81 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~-~p   81 (150)
                      .|+.... +.|.|.+++.+|+|.|+|.+.+..+...    ..+.|.|..  .|.....|....+..|+.+.|.|.+. .|
T Consensus       169 ~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P  248 (326)
T PHA02785        169 KRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRP  248 (326)
T ss_pred             cceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCC
Confidence            4554443 7899999999999999999998766533    334566653  22223445666777899999999999 77


Q ss_pred             CCCCcEEEEeecCcccCCCc-----c----------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         82 DSGPYLIAWFKDGRQIPGRT-----S----------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        82 ~~~~~~~~w~~~~~~~~~~~-----~----------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ....+.+.|.+++..+....     .                ...|.|.++..+|.|.|.|.|.|..|
T Consensus       249 ~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~  316 (326)
T PHA02785        249 PTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPS  316 (326)
T ss_pred             CCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence            21125899999987663210     0                24699999999999999999999876

>KOG4221|consensus

Probab=99.72  E-value=4.3e-16  Score=114.33  Aligned_cols=138  Identities=22%  Similarity=0.356  Sum_probs=109.1

Q ss_pred             ecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEEEecCc------eEEeCCCcEEEecCCcEEEEE
Q psy11131          5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQVSTPY------RVDVNPPLLSVHLDGSANFQC   76 (150)
Q Consensus         5 ~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~------~~~~~~~~~~~~~g~~~~l~C   76 (150)
                      |+..++|+.... +.|.|.++..+|.|.|+|.+.++. ...+..+.|+|..-+      .+...|....+.+|+.+.|.|
T Consensus       180 pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leC  259 (1381)
T KOG4221|consen  180 PLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLEC  259 (1381)
T ss_pred             cccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEE
Confidence            455556776665 899999999999999999999863 234667788887321      234456667788999999999


Q ss_pred             Eec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131         77 EIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus        77 ~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      .+. .|   .|.+.|.+++..+..+..      ...|.+++++..|+|.|+|++.|..- .....+.+.|..+|...
T Consensus       260 vvs~~p---~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D-~idasaev~V~a~P~~~  332 (1381)
T KOG4221|consen  260 VVSGVP---KPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTND-SIDASAEVTVLAPPGFT  332 (1381)
T ss_pred             EecCCC---CCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCc-ccccceEEEEEcCCCCC
Confidence            999 99   999999999988876643      56899999999999999999998554 45677788888876543

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.70  E-value=6.7e-16  Score=85.91  Aligned_cols=87  Identities=22%  Similarity=0.296  Sum_probs=73.6

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .+...+....+..|+.+.|.|.+. .|   .+.+.|++++..+.....        .+.|.|..+..+|.|.|+|.+.|.
T Consensus         2 ~~~~~p~~~~v~~G~~v~l~C~~~G~p---~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~   78 (98)
T cd05762           2 QIIQFPEDMKVRAGESVELFCKVTGTQ---PITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK   78 (98)
T ss_pred             ceEECCcCEEEECCCEEEEEEEEcccC---CCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence            344556778889999999999999 99   999999999987754322        467999999999999999999999


Q ss_pred             CCCceeeeEEEEEcCcCccc
Q psy11131        127 DGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       127 ~g~~~~~~~~l~v~~~p~~~  146 (150)
                      .| ....++.|.|.+.|..+
T Consensus        79 ~G-~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          79 LG-SRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             CC-ceeEEEEEEEecCCCCC
Confidence            99 68889999998877543

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG4222|consensus

Probab=99.70  E-value=8.2e-17  Score=117.34  Aligned_cols=129  Identities=29%  Similarity=0.436  Sum_probs=111.7

Q ss_pred             eEEeCCeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEE
Q psy11131         12 TRVLGPILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIA   89 (150)
Q Consensus        12 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~   89 (150)
                      ..+.++.|.|.|+.++|.|.|.|++.|..|. .+..+.|+|+++|.+...+....+..|..+.+.|.+. +|   .|.+.
T Consensus       182 ~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP---~P~Vr  258 (1281)
T KOG4222|consen  182 ALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDP---QPTVR  258 (1281)
T ss_pred             EEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCC---CCcee
Confidence            3455699999999999999999999998776 6678999999999999888888999999999999999 99   99999


Q ss_pred             EeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         90 WFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        90 w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      |.+.+..+....-     ..++.+.++...|.|.|.|.+.|..| ..+....+.|+++|.
T Consensus       259 wkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG-~l~asa~ltV~apP~  317 (1281)
T KOG4222|consen  259 WKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVG-GLEASATLTVQAPPS  317 (1281)
T ss_pred             eeccCCCCCccceeeeeccccccccccCCCcccceeeecccccc-ccccccceEEecCcc
Confidence            9997776654432     36788888999999999999999999 688888888887764

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.68  E-value=6.4e-15  Score=87.22  Aligned_cols=109  Identities=24%  Similarity=0.382  Sum_probs=80.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCC-cEEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGP-YLIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~-~~~~w~~~   93 (150)
                      .+|.|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.+...+.......|..+.|.|.+.  .|   . ..+.|.++
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P---~~~~i~W~~~   77 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYP---LDVQVEWTRE   77 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCC---CCeEEEEEEC
Confidence            379999999999999999998877778888999999988887666555455788899999999  45   4 58999998


Q ss_pred             CcccCC------C----------cc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         94 GRQIPG------R----------TS----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        94 ~~~~~~------~----------~~----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +.....      .          ..    .+.|.+......+...|.|.+.+...
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            753111      0          00    34555554444456689999986543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.66  E-value=5e-15  Score=80.88  Aligned_cols=82  Identities=20%  Similarity=0.253  Sum_probs=67.0

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      |.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....    ...|.|.++..+|.|.|.|.+.|..| 
T Consensus         2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P---~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-   77 (88)
T cd05851           2 ADINVKFKDTYALKGQNVTLECFALGNP---VPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKG-   77 (88)
T ss_pred             CceEEccccEEEeCCCcEEEEEEecccC---CCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCC-
Confidence            4455566677888999999999999 99   999999998876643322    45799999999999999999999999 


Q ss_pred             ceeeeEEEEEc
Q psy11131        130 VAQGSAELQLG  140 (150)
Q Consensus       130 ~~~~~~~l~v~  140 (150)
                      .....+.|.|+
T Consensus        78 ~~~~~~~l~V~   88 (88)
T cd05851          78 KDKHQARVYVQ   88 (88)
T ss_pred             ceEEEEEEEEC
Confidence            57777777663

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG4221|consensus

Probab=99.64  E-value=9.7e-16  Score=112.52  Aligned_cols=126  Identities=29%  Similarity=0.511  Sum_probs=107.0

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL   87 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~   87 (150)
                      .|+.+.+ ++|.|++++..|+|.|+|.+.|..-...+.+.|+|.++|.+...|......++.++++.|.+. .|   .+.
T Consensus       283 ~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p---~p~  359 (1381)
T KOG4221|consen  283 YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKP---IPT  359 (1381)
T ss_pred             eEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCC---cce
Confidence            5677765 889999999999999999999977778888899999999888888888888899999999999 99   999


Q ss_pred             EEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         88 IAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        88 ~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|++++..+.....     ...+.|..+...|.|.|.|.+.|..| .....+.+.+
T Consensus       360 v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G-~a~a~a~l~v  415 (1381)
T KOG4221|consen  360 VRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAG-SAQAAAQLEV  415 (1381)
T ss_pred             EEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcc-cccchhhhee
Confidence            999999887655432     33488888889999999999999998 4666666644

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.63  E-value=3e-14  Score=95.25  Aligned_cols=109  Identities=21%  Similarity=0.312  Sum_probs=81.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc--eEEeCCCcEEEecCCcEEEEEEe-----c-CCCCCCcEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY--RVDVNPPLLSVHLDGSANFQCEI-----T-PYDSGPYLI   88 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~~~~l~C~~-----~-~p~~~~~~~   88 (150)
                      ..|.|.++..+|+|.|+|.+.|..+.....+.|+|....  .+...+....+.+|....+.|..     . .|   .+.+
T Consensus        82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~---~~~i  158 (326)
T PHA02785         82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNV---NADI  158 (326)
T ss_pred             ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCC---CceE
Confidence            358899999999999999999988877778888886432  12222223346688999999972     3 56   7899


Q ss_pred             EEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         89 AWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        89 ~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      .|.++.. +.....    ...|.|.++..+|.|.|+|.+.|..|.
T Consensus       159 ~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  202 (326)
T PHA02785        159 IWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGD  202 (326)
T ss_pred             EEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCC
Confidence            9987542 222111    357999999999999999999998773

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.61  E-value=5.2e-14  Score=76.93  Aligned_cols=79  Identities=20%  Similarity=0.282  Sum_probs=64.7

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      +...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....    ...|.|.++..+|.|.|.|.+.|..| ..
T Consensus         4 ~~~~p~~~~~~~g~~v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~   79 (88)
T cd04968           4 IVVFPKDTYALKGQNVTLECFALGNP---VPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKG-KD   79 (88)
T ss_pred             EEECCCceEEeCCCcEEEEEEeeEeC---CCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCC-cE
Confidence            44456667788999999999999 99   999999998765543321    57899999999999999999999999 56


Q ss_pred             eeeEEEEE
Q psy11131        132 QGSAELQL  139 (150)
Q Consensus       132 ~~~~~l~v  139 (150)
                      ...+.|.|
T Consensus        80 ~~~~~l~V   87 (88)
T cd04968          80 THQGRIYV   87 (88)
T ss_pred             EEEEEEEE
Confidence            77777766

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.60  E-value=1.3e-14  Score=76.77  Aligned_cols=68  Identities=31%  Similarity=0.459  Sum_probs=57.3

Q ss_pred             cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +|+.+.|.|.+. .|   .|.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.|..| ..+..+.|.|
T Consensus         1 eG~~v~l~C~~~g~P---~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYP---QPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVG-SQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEec---CCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCC-ceeEEEEEeC
Confidence            588999999999 99   999999999887654332     45899999999999999999999999 5777766654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.58  E-value=5.4e-14  Score=76.78  Aligned_cols=73  Identities=26%  Similarity=0.456  Sum_probs=61.7

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c------------eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S------------STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      |+.+.|.|.+. .|   .+.+.|.+++..+.... +            .+.|.|.++..+|.|.|.|.|.|..| .....
T Consensus         1 g~~~~l~C~~~g~p---~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G-~~~~~   76 (88)
T cd05735           1 GQKKEMSCTAHGEK---PIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYG-EDRGI   76 (88)
T ss_pred             CCeEEEEEEEECCC---CCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCC-cceEE
Confidence            67899999999 88   99999999887664321 1            25799999999999999999999999 68889


Q ss_pred             EEEEEcCcCcc
Q psy11131        135 AELQLGGTRNI  145 (150)
Q Consensus       135 ~~l~v~~~p~~  145 (150)
                      +.|.|.++|..
T Consensus        77 ~~L~V~~~P~~   87 (88)
T cd05735          77 IQLTVQEPPDP   87 (88)
T ss_pred             EEEEEeCCCCC
Confidence            99999888754

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.58  E-value=3e-14  Score=73.43  Aligned_cols=64  Identities=27%  Similarity=0.449  Sum_probs=54.4

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+........|.|.++..+|.|.|+|.+.|..| ..++++.+.+
T Consensus         1 ~~l~c~v~g~P---~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYP---PPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAA-GLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeC---CCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCc-cEEEEEEEEE
Confidence            36899999 99   99999999998886443367999999999999999999999999 5667766665

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.58  E-value=8.9e-14  Score=76.63  Aligned_cols=80  Identities=24%  Similarity=0.470  Sum_probs=64.9

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   79 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEP---APTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE   79 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecC---CCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence            34555567778899999999999999 99   999999999877654322        3579999999999999999999


Q ss_pred             eCCCCceeeeEEE
Q psy11131        125 RSDGDVAQGSAEL  137 (150)
Q Consensus       125 ~~~g~~~~~~~~l  137 (150)
                      |..| ....++.|
T Consensus        80 N~~G-~~~~~~~l   91 (92)
T cd05747          80 NSEG-KQEAQFTL   91 (92)
T ss_pred             cCCC-CEeEEEEe
Confidence            9999 46665554

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.57  E-value=1.2e-13  Score=76.11  Aligned_cols=74  Identities=19%  Similarity=0.359  Sum_probs=60.7

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDV  130 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~  130 (150)
                      |....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....         ...|.|.++..+|+|.|.|.+.|..| .
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~   83 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDP---DPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG-G   83 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecC---CCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC-c
Confidence            4556788999999999999 99   999999999877654322         24699999999999999999999999 4


Q ss_pred             eeeeEEEE
Q psy11131        131 AQGSAELQ  138 (150)
Q Consensus       131 ~~~~~~l~  138 (150)
                      ....+.+.
T Consensus        84 ~~~~~~v~   91 (92)
T cd05737          84 ETVDVTVS   91 (92)
T ss_pred             ceEEEEEe
Confidence            66666554

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.56  E-value=1.5e-13  Score=74.61  Aligned_cols=73  Identities=18%  Similarity=0.302  Sum_probs=60.9

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c--------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S--------STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      .+.+.+|+.+.|.|.+. .|   .|.+.|++++..+.... +        ...|.|..+..+|+|.|.|.+.|..| ...
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P---~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G-~~~   79 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEP---APTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVG-EDH   79 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecC---CCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCC-cEE
Confidence            35678899999999999 99   99999999988775432 1        36799999999999999999999999 566


Q ss_pred             eeEEEEE
Q psy11131        133 GSAELQL  139 (150)
Q Consensus       133 ~~~~l~v  139 (150)
                      .++.|.|
T Consensus        80 ~~~~l~V   86 (86)
T cd05894          80 ASLFVKV   86 (86)
T ss_pred             EEEEEEC
Confidence            6666653

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.56  E-value=4.7e-14  Score=74.23  Aligned_cols=67  Identities=22%  Similarity=0.398  Sum_probs=55.9

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |+.+.|.|.+. .|   .|.+.|++++..+....+     ...|.|.++..+|.|.|.|.+.|..| ....++.|.|
T Consensus         1 G~~~~l~C~~~g~P---~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAP---KPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRG-KANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeC---CCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCC-ceeEEEEEEC
Confidence            67899999999 99   999999998876543332     46899999999999999999999999 5777776653

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.54  E-value=2e-13  Score=74.93  Aligned_cols=80  Identities=34%  Similarity=0.627  Sum_probs=66.8

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|.
T Consensus         2 ~~~~~~~~~~v~~G~~~~l~c~~~~~p---~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen    2 VFTKKPKDVTVKEGESVTLECEVSGNP---PPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             EEEEESSEEEEETTSEEEEEEEEEESS---SSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred             EEEEecCCEEEeCCCEEEEEEEEEeCC---CCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence            444556778899999999999999 88   999999999887765433        578999999999999999999999


Q ss_pred             CCCceeeeEEEEE
Q psy11131        127 DGDVAQGSAELQL  139 (150)
Q Consensus       127 ~g~~~~~~~~l~v  139 (150)
                      .| .....+.|.|
T Consensus        79 ~g-~~~~~~~l~V   90 (90)
T PF07679_consen   79 SG-EATASVNLTV   90 (90)
T ss_dssp             TE-EEEEEEEEEE
T ss_pred             CC-EEEEEEEEEC
Confidence            88 5667776654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.54  E-value=1.2e-13  Score=75.00  Aligned_cols=76  Identities=24%  Similarity=0.461  Sum_probs=63.4

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      .|....+..|+.+.|.|.+. .|   .|.+.|++++..+.....    ...|.|.++..+|.|.|.|.+.|..| .....
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p---~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-~~~~~   80 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNP---RPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHG-TIYAS   80 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeC---CCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCC-eEEEE
Confidence            45567788999999999999 99   999999999887754432    56899999999999999999999999 56666


Q ss_pred             EEEEE
Q psy11131        135 AELQL  139 (150)
Q Consensus       135 ~~l~v  139 (150)
                      +.|.|
T Consensus        81 ~~l~V   85 (85)
T cd05728          81 AELAV   85 (85)
T ss_pred             EEEEC
Confidence            66643

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.54  E-value=2.7e-13  Score=75.19  Aligned_cols=75  Identities=23%  Similarity=0.390  Sum_probs=62.7

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC-cc------eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR-TS------STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~-~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      ...+..|+.+.|.|.+. .|   .|.+.|.+++..+... ..      ...|.|.++..+|.|.|.|.+.|..| .....
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~   87 (95)
T cd05730          12 NATANLGQSVTLACDADGFP---EPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAG-EQEAE   87 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeC---CCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCC-eEEEE
Confidence            34678999999999999 99   9999999998776543 11      35799999999999999999999999 57788


Q ss_pred             EEEEEcC
Q psy11131        135 AELQLGG  141 (150)
Q Consensus       135 ~~l~v~~  141 (150)
                      +.|.|..
T Consensus        88 ~~L~V~~   94 (95)
T cd05730          88 IHLKVFA   94 (95)
T ss_pred             EEEEEEe
Confidence            8887753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.53  E-value=2.2e-13  Score=76.01  Aligned_cols=75  Identities=24%  Similarity=0.390  Sum_probs=62.8

Q ss_pred             CcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      ....+.+|+.+.|.|.+.  .|   .|.+.|++++..+.....             ...|.|..+..+|.|.|+|.|.|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P---~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~   87 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPP---PPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNS   87 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCC---CCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECC
Confidence            456788999999999998  56   889999999987763322             256999999999999999999999


Q ss_pred             CCCceeeeEEEEEc
Q psy11131        127 DGDVAQGSAELQLG  140 (150)
Q Consensus       127 ~g~~~~~~~~l~v~  140 (150)
                      .| ..+.++.|.|+
T Consensus        88 ~G-~~~~t~~L~V~  100 (101)
T cd04975          88 DA-SKSLTFELYVN  100 (101)
T ss_pred             Cc-cEEEEEEEEEE
Confidence            99 68888888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.53  E-value=2.4e-13  Score=72.24  Aligned_cols=67  Identities=27%  Similarity=0.507  Sum_probs=56.0

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc---c----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT---S----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~---~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |+.+.|.|.+. .|   .|.+.|++++..+....   .    ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus         1 G~~v~l~C~~~G~P---~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIP---TPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHG-NLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeC---CCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCC-eEEEEEEEEE
Confidence            67899999999 99   99999999988765321   1    46799999999999999999999999 5667777765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.52  E-value=3.3e-13  Score=73.16  Aligned_cols=70  Identities=24%  Similarity=0.321  Sum_probs=57.7

Q ss_pred             CcEEEEEEec-CCCCCCc--EEEEeecCcccCCCc------------ceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         70 GSANFQCEIT-PYDSGPY--LIAWFKDGRQIPGRT------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        70 ~~~~l~C~~~-~p~~~~~--~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      +.+.|.|.+. .|   .|  .+.|++++..+....            ....|.|.++...|.|.|+|.|.|..| ..+..
T Consensus         1 ~~~~L~C~a~g~P---~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g-~~~~~   76 (85)
T cd05854           1 ENLTLQCHASHDP---TMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVD-SASAS   76 (85)
T ss_pred             CcEEEEEEEecCC---CCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCC-CEEEE
Confidence            3688999999 77   55  689999987664321            035799999999999999999999999 68889


Q ss_pred             EEEEEcCcC
Q psy11131        135 AELQLGGTR  143 (150)
Q Consensus       135 ~~l~v~~~p  143 (150)
                      +.|.|.++|
T Consensus        77 ~~L~V~~~P   85 (85)
T cd05854          77 ATLVVRGPP   85 (85)
T ss_pred             EEEEEECCC
Confidence            999998876

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.52  E-value=4e-13  Score=73.08  Aligned_cols=75  Identities=24%  Similarity=0.438  Sum_probs=60.4

Q ss_pred             CCcEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         61 PPLLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      |....+.+|+.+.|.|.+ . .|   .+.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|..|...+
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p---~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHP---EPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCC---CCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            455678899999999998 5 78   899999998877654221      457999999999999999999999985555


Q ss_pred             eeEEEE
Q psy11131        133 GSAELQ  138 (150)
Q Consensus       133 ~~~~l~  138 (150)
                      ..+.|.
T Consensus        80 ~~~~l~   85 (86)
T cd05724          80 AAARLS   85 (86)
T ss_pred             eeEEEE
Confidence            666554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.52  E-value=2e-13  Score=73.54  Aligned_cols=72  Identities=19%  Similarity=0.370  Sum_probs=59.1

Q ss_pred             CcEEEEEEec-CCCCCCcEEEEeecCcccCCC--c-c---------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEE
Q psy11131         70 GSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR--T-S---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAE  136 (150)
Q Consensus        70 ~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~--~-~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~  136 (150)
                      +.+.|.|.+. .|.. .+.+.|++++..+...  . .         ...|.|.+++.+|.|.|+|.|.|..+ ..+.++.
T Consensus         1 ~~~~l~C~v~~d~~l-~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~-~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSL-DIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVD-KLSAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCC-CcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccC-ceEEEEE
Confidence            3578999997 4422 7899999999888632  1 1         24799999999999999999999998 6899999


Q ss_pred             EEEcCcC
Q psy11131        137 LQLGGTR  143 (150)
Q Consensus       137 l~v~~~p  143 (150)
                      |.|.+||
T Consensus        79 L~V~~pP   85 (85)
T cd05853          79 LIVRGPP   85 (85)
T ss_pred             EEEecCC
Confidence            9999887

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.51  E-value=6.7e-13  Score=72.83  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=61.3

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      +....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|..| ..
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P---~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G-~~   82 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSP---LPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVG-QA   82 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcC---CCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCC-ce
Confidence            3445588999999999999 99   999999999876643221        35799999999999999999999999 56


Q ss_pred             eeeEEEEE
Q psy11131        132 QGSAELQL  139 (150)
Q Consensus       132 ~~~~~l~v  139 (150)
                      ...+.|.|
T Consensus        83 ~~~~~L~v   90 (90)
T cd04972          83 NVSVQVTV   90 (90)
T ss_pred             eEEEEEeC
Confidence            77766653

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.51  E-value=1e-12  Score=73.09  Aligned_cols=80  Identities=21%  Similarity=0.342  Sum_probs=60.5

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-----c--------eeeEEEccCCCCCCceEEE
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-----S--------STSLVINPVGREDRGIYQC  121 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-----~--------~~~l~~~~~~~~~~g~y~C  121 (150)
                      .+...+.......|+.+.|.|.+. .|   .|.+.|++++..+....     .        .+.|.|.++..+|.|.|.|
T Consensus         4 ~i~~~~~~~~~~~g~~v~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C   80 (97)
T cd05869           4 KITYVENQTAMELEEQITLTCEASGDP---IPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC   80 (97)
T ss_pred             eEEEccCceEEEcCCCEEEEEEeeEeC---CCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence            333334444455689999999999 99   99999999775543211     0        3579999999999999999


Q ss_pred             EEEeCCCCceeeeEEEEE
Q psy11131        122 IARRSDGDVAQGSAELQL  139 (150)
Q Consensus       122 ~~~~~~g~~~~~~~~l~v  139 (150)
                      .+.|..| ..+..+.|.|
T Consensus        81 ~A~N~~G-~~~~~~~l~v   97 (97)
T cd05869          81 TASNTIG-QDSQSMYLEV   97 (97)
T ss_pred             EEecCCC-CeeEEEEEEC
Confidence            9999999 5777777654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.51  E-value=2.7e-13  Score=71.47  Aligned_cols=67  Identities=25%  Similarity=0.413  Sum_probs=55.9

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |+.+.|.|.+. .|   .|.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.|..| ....++.|.|
T Consensus         1 G~~v~L~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAP---KPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFG-KANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcC---CCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCC-ceEEEEEEEC
Confidence            67899999999 99   999999999887654332     45799999999999999999999999 5777766654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.50  E-value=3.8e-13  Score=71.42  Aligned_cols=67  Identities=18%  Similarity=0.364  Sum_probs=56.2

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |+.+.|.|.+. .|   .|.+.|.+++..+.....       ...|.+..+...|.|.|.|.+.|..| ....++.|.|
T Consensus         1 g~~~~l~C~a~G~P---~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNP---KPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYG-YLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeC---CCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCC-EEEEEEEEEe
Confidence            67899999999 99   999999999887643211       35788999999999999999999999 6777777766

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.50  E-value=9.5e-13  Score=72.86  Aligned_cols=78  Identities=22%  Similarity=0.527  Sum_probs=60.9

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCC-cEEEEee-cCcccCC-Ccc---------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGP-YLIAWFK-DGRQIPG-RTS---------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~-~~~~w~~-~~~~~~~-~~~---------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      ..|....+.+|+.+.|.|.+. .|   . |.+.|++ ++..+.. ..+         ...|.|..+..+|.|.|+|.|.|
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~G~P---~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N   81 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVAGEA---KDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN   81 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEeCCC---CCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence            445556788999999999999 77   5 6999997 6655433 111         25799999999999999999999


Q ss_pred             CCCCceeeeEEEEE
Q psy11131        126 SDGDVAQGSAELQL  139 (150)
Q Consensus       126 ~~g~~~~~~~~l~v  139 (150)
                      ..|.....++.|.|
T Consensus        82 ~~~g~~~~s~~l~v   95 (96)
T cd05865          82 EDEGESEATVNVKI   95 (96)
T ss_pred             CCCCcEEEEEEEEE
Confidence            97436777877765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.50  E-value=6.3e-13  Score=71.11  Aligned_cols=73  Identities=21%  Similarity=0.380  Sum_probs=57.3

Q ss_pred             CcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         62 PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      ....+.+|+.+.|.|.+..+   .+.+.|++++..+.....    ...|.|.++..+|+|.|.|.+.|..| .....+.+
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~---~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g-~~~~~~~v   77 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD---VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSG-SDTTYFSV   77 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC---CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCC-cccEEEEE
Confidence            44667899999999998833   457999999987765432    45799999999999999999999888 45555544


Q ss_pred             E
Q psy11131        138 Q  138 (150)
Q Consensus       138 ~  138 (150)
                      .
T Consensus        78 ~   78 (79)
T cd04973          78 N   78 (79)
T ss_pred             e
Confidence            3

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.50  E-value=6.5e-13  Score=72.10  Aligned_cols=72  Identities=21%  Similarity=0.458  Sum_probs=59.0

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQG  133 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~  133 (150)
                      ..+.+|+.+.|.|.+. .|   .|.+.|++++..+.....         ...|.|..+..+|.|.|.|.+.|..| ....
T Consensus         4 ~~v~~G~~~~L~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G-~~~~   79 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNP---TPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINH   79 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCC---CCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCC-EEEE
Confidence            3467899999999999 88   999999999887654321         23688889999999999999999999 5777


Q ss_pred             eEEEEE
Q psy11131        134 SAELQL  139 (150)
Q Consensus       134 ~~~l~v  139 (150)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05857          80 TYHLDV   85 (85)
T ss_pred             EEEEEC
Confidence            777654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.50  E-value=4.9e-13  Score=74.68  Aligned_cols=74  Identities=27%  Similarity=0.409  Sum_probs=62.5

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ...+..|+.+.|.|.+. .|   .|.+.|++++..+.....              ...|.|.++..+|.|.|+|.|.|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P---~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~   88 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYP---PPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNED   88 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeC---CCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCC
Confidence            45677889999999999 99   999999999988764321              2579999999999999999999999


Q ss_pred             CCceeeeEEEEEc
Q psy11131        128 GDVAQGSAELQLG  140 (150)
Q Consensus       128 g~~~~~~~~l~v~  140 (150)
                      | ..+.++.|.|.
T Consensus        89 g-~~~~t~~l~V~  100 (101)
T cd05859          89 A-VKSYTFALQIQ  100 (101)
T ss_pred             c-eEEEEEEEEEE
Confidence            9 57778877764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.49  E-value=1.2e-12  Score=74.19  Aligned_cols=73  Identities=21%  Similarity=0.270  Sum_probs=60.1

Q ss_pred             cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c------------eeeEEEccCC-CCCCceEEEEEEeCCCCcee
Q psy11131         68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S------------STSLVINPVG-REDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~------------~~~l~~~~~~-~~~~g~y~C~~~~~~g~~~~  132 (150)
                      .|..+.|.|.+. .|   .+.+.|.+++..+.... .            .+.|.|.++. .+|.|.|.|.|.|..| ...
T Consensus        22 ~g~~v~L~C~a~G~P---~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G-~~~   97 (109)
T cd05773          22 GSSDANLVCQAQGVP---RVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLG-EDS   97 (109)
T ss_pred             CCCEEEEEEECcccC---CCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCc-cCc
Confidence            567899999999 99   89999999987764321 1            2468888887 5899999999999999 578


Q ss_pred             eeEEEEEcCcCc
Q psy11131        133 GSAELQLGGTRN  144 (150)
Q Consensus       133 ~~~~l~v~~~p~  144 (150)
                      ..+.|.+...|.
T Consensus        98 ~~i~L~~~~~p~  109 (109)
T cd05773          98 LDIQLVSTSRPD  109 (109)
T ss_pred             EEEEEEecCCCC
Confidence            889999888773

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.49  E-value=9.3e-13  Score=72.48  Aligned_cols=75  Identities=21%  Similarity=0.333  Sum_probs=60.8

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      .|....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....         ...|.|..+..+|.|.|.|.+.|..| 
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P---~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-   82 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNP---DPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG-   82 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeC---CCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCC-
Confidence            35567889999999999998 88   899999998876544321         23789999999999999999999999 


Q ss_pred             ceeeeEEEE
Q psy11131        130 VAQGSAELQ  138 (150)
Q Consensus       130 ~~~~~~~l~  138 (150)
                      ....++.+.
T Consensus        83 ~~~~~~~v~   91 (92)
T cd05891          83 GETVDVTVS   91 (92)
T ss_pred             ceeeEEEEE
Confidence            566666654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.49  E-value=4.6e-13  Score=70.74  Aligned_cols=64  Identities=27%  Similarity=0.471  Sum_probs=52.4

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCC-cc---------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGR-TS---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~-~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+... .+         ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus         1 v~l~C~v~G~P---~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G-~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIP---PPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAG-VATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecC---CCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcC-eEEEEEEEeC
Confidence            46899999 99   9999999998877532 11         12699999999999999999999999 5767776654

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.48  E-value=7.6e-13  Score=69.37  Aligned_cols=65  Identities=31%  Similarity=0.540  Sum_probs=53.0

Q ss_pred             cEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         71 SANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        71 ~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      .+.|.|.+. .|   .|.+.|++++..+.....     ...+.+..+..+|.|.|.|.+.|..| ....++.|.|
T Consensus         1 ~v~l~C~~~G~P---~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKP---TPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG-NVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeC---CCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCC-EEEEEEEEEC
Confidence            378999999 99   999999999877654332     34688889999999999999999999 5777776653

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.48  E-value=6.8e-13  Score=72.02  Aligned_cols=70  Identities=24%  Similarity=0.357  Sum_probs=57.5

Q ss_pred             CcEEEEEEec-CCCCCCc--EEEEeecCcccCCCc------------ceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         70 GSANFQCEIT-PYDSGPY--LIAWFKDGRQIPGRT------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        70 ~~~~l~C~~~-~p~~~~~--~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      +.+.|.|.+. .|   .+  .+.|.+++..+....            ....|.|.++...|+|.|.|.+.|..| ..+..
T Consensus         1 e~~~L~C~~~g~P---~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g-~~~~~   76 (85)
T cd04970           1 ESITLQCHASHDP---TLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVD-SLSAS   76 (85)
T ss_pred             CcEEEEEEEecCC---CCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCC-cEEEE
Confidence            3688999999 77   55  679999887664221            145799999999999999999999998 68889


Q ss_pred             EEEEEcCcC
Q psy11131        135 AELQLGGTR  143 (150)
Q Consensus       135 ~~l~v~~~p  143 (150)
                      +.|.|.++|
T Consensus        77 ~~l~V~~pP   85 (85)
T cd04970          77 ADLIVRGPP   85 (85)
T ss_pred             EEEEEECCC
Confidence            999998876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.47  E-value=1.1e-12  Score=69.29  Aligned_cols=65  Identities=26%  Similarity=0.422  Sum_probs=53.6

Q ss_pred             cEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         71 SANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        71 ~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      .+.|.|.+. .|   .|.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|..| ..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRP---TPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAG-EKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeC---CCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCc-cEEEEEEEEC
Confidence            368999999 99   999999999887643322        45799999999999999999999999 5777776654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.47  E-value=1.5e-12  Score=72.15  Aligned_cols=78  Identities=28%  Similarity=0.509  Sum_probs=60.0

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccC-----CCCCCceEEEEEEe
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPV-----GREDRGIYQCIARR  125 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~-----~~~~~g~y~C~~~~  125 (150)
                      ..|....+.+|+.+.|.|.+. .|   .|.+.|.+++..+.....       ...+.+..+     ...|.|.|.|.+.|
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAEGEP---PPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecccCC---CCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            345666778899999999999 99   999999999887753321       234555554     57899999999999


Q ss_pred             C-CCCceeeeEEEEE
Q psy11131        126 S-DGDVAQGSAELQL  139 (150)
Q Consensus       126 ~-~g~~~~~~~~l~v  139 (150)
                      . .|...++.+.|.|
T Consensus        81 ~~~G~~~s~~~~l~v   95 (95)
T cd05722          81 DSLGSIVSRTARLTV   95 (95)
T ss_pred             CccCcEEEeeeEEeC
Confidence            9 8965577777654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.47  E-value=1e-12  Score=69.79  Aligned_cols=67  Identities=22%  Similarity=0.395  Sum_probs=56.1

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |+.+.|.|.+. .|   .|.+.|++++..+.....       ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus         1 G~~~~l~C~~~g~P---~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIP---QPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHG-YLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeC---CCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCC-eEEEeEEEEE
Confidence            67899999999 99   999999999876643321       56899999999999999999999999 5777777765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.47  E-value=6e-13  Score=69.34  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=51.6

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+.....   ...|.|..+..+|.|.|+|.+.|..| .......+.+
T Consensus         1 ~~~~c~v~G~P---~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G-~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYP---PPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPIT-KEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeC---CCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCC-ceeeEEEEEE
Confidence            36889999 99   999999999988764422   45799999999999999999999998 3445444443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.46  E-value=3.4e-12  Score=70.53  Aligned_cols=79  Identities=27%  Similarity=0.406  Sum_probs=57.6

Q ss_pred             EEeCCCcEEEecC---CcEEEEEEec-CCCCCCcEEEEeecCcccCCCc--c----eeeEEEccCC-CCCCceEEEEEEe
Q psy11131         57 VDVNPPLLSVHLD---GSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S----STSLVINPVG-REDRGIYQCIARR  125 (150)
Q Consensus        57 ~~~~~~~~~~~~g---~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~----~~~l~~~~~~-~~~~g~y~C~~~~  125 (150)
                      +...|......+|   +.+.|.|.+. .|   .+.+.|++++..+....  .    ...|.|.++. ..|.|.|.|.|.|
T Consensus         4 f~~~P~~~~~~~~~~g~~v~l~C~a~g~P---~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05850           4 FEEQPSSLLFPEGSPEEKVTLGCRARASP---PATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN   80 (94)
T ss_pred             eEECCCCEEecCCCCCCeEEEEeEceeCC---CCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence            3344554544444   5799999999 99   99999999998775322  1    4567787654 5899999999999


Q ss_pred             CCCCceeeeEEEE
Q psy11131        126 SDGDVAQGSAELQ  138 (150)
Q Consensus       126 ~~g~~~~~~~~l~  138 (150)
                      ..|...++.+.|+
T Consensus        81 ~~G~~~s~~a~l~   93 (94)
T cd05850          81 RCGTVVSREANLR   93 (94)
T ss_pred             CcCcEEEEEEEEe
Confidence            9996556665553

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.46  E-value=2.1e-12  Score=72.15  Aligned_cols=82  Identities=30%  Similarity=0.533  Sum_probs=61.0

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC----cc------eeeEE---E--ccCCCCCCce
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR----TS------STSLV---I--NPVGREDRGI  118 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~----~~------~~~l~---~--~~~~~~~~g~  118 (150)
                      |.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+...    ..      ...+.   +  ..+..+|.|.
T Consensus         2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~   78 (100)
T cd07693           2 PRIVEHPSDLIVSKGDPATLNCKAEGRP---TPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV   78 (100)
T ss_pred             CeEEecCceeEEcCCCeEEEEeeCCcCC---CCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence            4555667778889999999999999 99   9999999998876541    11      11111   1  2236789999


Q ss_pred             EEEEEEeCCCCceeeeEEEEE
Q psy11131        119 YQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       119 y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |.|.+.|..|...+..+.|.|
T Consensus        79 Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          79 YVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEccccceecceEEEEe
Confidence            999999999954777777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.46  E-value=6.9e-13  Score=69.49  Aligned_cols=64  Identities=23%  Similarity=0.433  Sum_probs=52.7

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+.....    ...|.|.++..+|+|.|+|.+.|..| .....+.+.+
T Consensus         1 ~~l~c~v~g~P---~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYP---PPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQA-KLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeC---CCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCc-cEEEEEEEEE
Confidence            36889999 99   999999999987754422    56899999999999999999999998 4666666654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.46  E-value=2.5e-12  Score=71.06  Aligned_cols=67  Identities=25%  Similarity=0.447  Sum_probs=52.4

Q ss_pred             cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCC-CCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVG-REDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~-~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      +|+.+.|.|.+. .|   .|.+.|++++..+.....      ...|.|..+. .+|.|.|.|.|.|..|...++.+.|
T Consensus        18 ~g~~v~l~C~~~G~P---~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          18 DEKKVILNCEARGNP---VPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CCCEEEEEEEeeecC---CCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            478899999999 99   999999999887753221      4567787764 6899999999999999544555443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.46  E-value=2.2e-12  Score=70.80  Aligned_cols=76  Identities=21%  Similarity=0.316  Sum_probs=61.2

Q ss_pred             CCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131         61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSA  135 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~  135 (150)
                      +....+.+|+.+.|.|.+...   .|.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.|..|...+..+
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~---~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~   86 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ---ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY   86 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC---CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence            345578899999999998733   689999999876643321     358999999999999999999999996667777


Q ss_pred             EEEE
Q psy11131        136 ELQL  139 (150)
Q Consensus       136 ~l~v  139 (150)
                      .|.|
T Consensus        87 ~L~V   90 (91)
T cd05740          87 ILNV   90 (91)
T ss_pred             EEEe
Confidence            7776

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.45  E-value=1.1e-12  Score=68.74  Aligned_cols=64  Identities=19%  Similarity=0.321  Sum_probs=52.9

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.|..| ..+.++.|.|
T Consensus         1 ~~L~C~~~G~P---~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLP---TPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG-SARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEec---CCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCC-eEEEEEEEEE
Confidence            46899999 99   999999998776543221     46899999999999999999999999 5777777765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.45  E-value=1.3e-12  Score=70.54  Aligned_cols=75  Identities=19%  Similarity=0.301  Sum_probs=59.8

Q ss_pred             CcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ....+.+|+.+.|.|.+.  .+   ...+.|++++..+........|.|..+..+|+|.|.|.+.+..+...++.+.|.|
T Consensus         7 p~~~V~~G~~vtL~C~~~~~~~---~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWKNKP---VYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             CcceecCCCCEEEEeeCCCCCc---ceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            344688999999999986  45   6789999998776543335789999999999999999999998855666666653

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.45  E-value=1.1e-12  Score=69.41  Aligned_cols=64  Identities=23%  Similarity=0.445  Sum_probs=52.0

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+.....          ...|.|..+..+|.|.|.|.+.|..| ..+.++.|.|
T Consensus         1 v~l~C~v~G~P---~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVP---HPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAG-IVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEec---CCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCC-EEEEEEEEeC
Confidence            46899999 99   999999999887653221          12689999999999999999999999 5777777654

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.45  E-value=3.6e-12  Score=70.75  Aligned_cols=75  Identities=23%  Similarity=0.247  Sum_probs=59.4

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-------------ceeeEEEccCCCCCCceEEEEEEeC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-------------SSTSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-------------~~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +....+.+|+.+.|.|.+. .|   .|.+.|++++..+....             ....|.|.++..+|.|.|.|.+.|.
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   84 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDP---IPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNR   84 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcC---CCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeC
Confidence            3446778999999999999 99   99999999875443210             0357999999999999999999999


Q ss_pred             CCCceeeeEEEEE
Q psy11131        127 DGDVAQGSAELQL  139 (150)
Q Consensus       127 ~g~~~~~~~~l~v  139 (150)
                      .| ..+.++.|.|
T Consensus        85 ~G-~~~~s~~l~v   96 (96)
T cd05732          85 IG-GDQQSMYLEV   96 (96)
T ss_pred             CC-CcEEEEEEeC
Confidence            99 4667666653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.44  E-value=1.7e-12  Score=69.89  Aligned_cols=70  Identities=19%  Similarity=0.367  Sum_probs=56.9

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      ....|+.+.|.|.+. .|   .|.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|..| ....++.|
T Consensus         5 ~~~~G~~v~L~C~~~g~p---~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~v   80 (82)
T cd05856           5 ARPVGSSVRLKCVASGNP---RPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAG-EINATYKV   80 (82)
T ss_pred             eccCCCeEEEEEEeeEeC---CCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCc-cEEEEEEE
Confidence            456799999999999 88   899999998876643321      36799999999999999999999999 46666655


Q ss_pred             E
Q psy11131        138 Q  138 (150)
Q Consensus       138 ~  138 (150)
                      .
T Consensus        81 ~   81 (82)
T cd05856          81 D   81 (82)
T ss_pred             e
Confidence            4

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.44  E-value=3e-12  Score=68.58  Aligned_cols=73  Identities=21%  Similarity=0.420  Sum_probs=57.2

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeecCcccCCC--cceeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKDGRQIPGR--TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA  135 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~  135 (150)
                      .|....+..|+.+.|.|.+. .|   .| .+.|.+++..+...  ...+.|.+..+  .|.|.|.|.|.|..|...++.+
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P---~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a   78 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPP---EPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG   78 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeec---CCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence            45567888999999999999 99   89 79999999877541  12567777766  4789999999999996555555


Q ss_pred             EE
Q psy11131        136 EL  137 (150)
Q Consensus       136 ~l  137 (150)
                      .|
T Consensus        79 ~~   80 (81)
T cd05749          79 TV   80 (81)
T ss_pred             Ee
Confidence            44

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.44  E-value=3.7e-12  Score=69.89  Aligned_cols=76  Identities=24%  Similarity=0.476  Sum_probs=59.1

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec-CcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD-GRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~-~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      .+....+.+|+.+.|.|.+. .|   . .+.|+++ +..+....+        ...|.|..+..+|.|.|.|.|.|..|.
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P---~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   81 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEP---E-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ   81 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeC---C-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence            34556788999999999999 88   7 8999974 544432222        247999999999999999999999996


Q ss_pred             ceeeeEEEEE
Q psy11131        130 VAQGSAELQL  139 (150)
Q Consensus       130 ~~~~~~~l~v  139 (150)
                      ....++.|.+
T Consensus        82 ~~~~~i~l~~   91 (92)
T cd05866          82 TQEATVVLEI   91 (92)
T ss_pred             EEEEEEEEEE
Confidence            5566666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.44  E-value=4.2e-12  Score=69.89  Aligned_cols=77  Identities=25%  Similarity=0.557  Sum_probs=58.8

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee-cCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK-DGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~-~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ..|....+..|+.+.|.|.+. .|   . .+.|++ ++..+.....         ...|.|.++..+|.|.|.|.+.|..
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p---~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   80 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEP---K-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK   80 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeC---C-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence            445667788999999999998 77   5 899997 4544332111         3589999999999999999999997


Q ss_pred             CCceeeeEEEEE
Q psy11131        128 GDVAQGSAELQL  139 (150)
Q Consensus       128 g~~~~~~~~l~v  139 (150)
                      |.....++.|.|
T Consensus        81 g~~~~~sv~l~~   92 (92)
T cd04977          81 GTESEATVNLKI   92 (92)
T ss_pred             CCcceeEEEEEC
Confidence            755666666643

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.42  E-value=1.9e-12  Score=67.52  Aligned_cols=64  Identities=31%  Similarity=0.512  Sum_probs=51.7

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+.....    ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus         1 v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDP---VPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVG-KIEASASLTV   69 (69)
T ss_pred             CEEEEECccCC---CCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCC-cEEEEEEEEC
Confidence            46899999 89   999999998765543321    46899999999999999999999999 5667666653

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.42  E-value=7.3e-12  Score=68.98  Aligned_cols=66  Identities=27%  Similarity=0.410  Sum_probs=51.9

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c----eeeEEEccCC-CCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S----STSLVINPVG-REDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~----~~~l~~~~~~-~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      +..+.|.|.+. .|   .|.+.|++++..+.... .    ...|.|.++. .+|.|.|.|.|.|..|...++.+.|
T Consensus        19 ~~~v~l~C~a~G~P---~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANP---FPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCC---CCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            44799999999 99   99999999987764321 1    4678888875 5899999999999999655555554

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.42  E-value=1.2e-12  Score=68.17  Aligned_cols=62  Identities=34%  Similarity=0.521  Sum_probs=50.5

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      +.|.|.+. .|   .|.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.|..| ..+..+.|
T Consensus         1 v~L~C~~~g~P---~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDP---EPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG-YASVSMVL   68 (69)
T ss_pred             CEeEecceEeC---CCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCC-cEEEEEEe
Confidence            46899999 99   999999999877654322     56899999999999999999999999 45555544

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.42  E-value=5.2e-12  Score=70.36  Aligned_cols=75  Identities=25%  Similarity=0.316  Sum_probs=58.3

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccCCC-----cc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIPGR-----TS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~~~-----~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +....+.+|+.+.|.|.+. .|   .|.+.|++.  +..+...     .+        ...|.|.++..+|.|.|.|.+.
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P---~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~   84 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEP---IPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAA   84 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCC---CCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEe
Confidence            4557788999999999999 99   999999984  3322110     11        3579999999999999999999


Q ss_pred             eCCCCceeeeEEEEE
Q psy11131        125 RSDGDVAQGSAELQL  139 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v  139 (150)
                      |..| ....++.|.|
T Consensus        85 N~~G-~~~~~~~l~~   98 (98)
T cd05870          85 SRIG-GHQKSMYLDI   98 (98)
T ss_pred             ccCC-cceeEEEEeC
Confidence            9999 5666766653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.42  E-value=3e-12  Score=68.34  Aligned_cols=66  Identities=24%  Similarity=0.422  Sum_probs=52.8

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ  138 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~  138 (150)
                      |+.+.|.|.+. .|   .|.+.|++++..+....+        ...|.|.++..+|.|.|.|.+.|..| .......+.
T Consensus         1 G~~v~l~C~~~g~P---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVP---TPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRG-MVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEec---CCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCC-EEEecccEE
Confidence            67899999999 99   999999998766543322        36799999999999999999999999 454444443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.41  E-value=3.6e-12  Score=67.46  Aligned_cols=64  Identities=27%  Similarity=0.454  Sum_probs=51.7

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCc-c---------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+.... .         ...|.|..+..+|.|.|.|.+.|..| .....+.|.|
T Consensus         1 v~L~C~v~G~P---~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIP---PPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAG-VVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecC---CCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC-cEEEEEEEeC
Confidence            46899999 99   99999999988775321 1         12699999999999999999999999 5666666643

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.41  E-value=3.5e-12  Score=67.91  Aligned_cols=67  Identities=24%  Similarity=0.529  Sum_probs=52.4

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCce-eeeEEEEEcC
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVA-QGSAELQLGG  141 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~-~~~~~l~v~~  141 (150)
                      +.|.|.+. .|   .|.+.|++++..+.....       ...|.|.++..+|.|.|.|.+.|..|... +..+.|.|.+
T Consensus         1 v~L~C~~~g~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d   76 (77)
T cd05760           1 VTLRCHIDGHP---RPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID   76 (77)
T ss_pred             CEEEEEeeecC---CCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence            46899999 99   999999999887754321       35799999999999999999999999422 3456666543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.41  E-value=3.4e-12  Score=67.40  Aligned_cols=65  Identities=29%  Similarity=0.452  Sum_probs=53.0

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCC--cc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGR--TS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~--~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+...  ..     ...|.|.++..+|.|.|.|.+.|..|...+..+.|.|
T Consensus         1 a~l~C~~~G~P---~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNP---DPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEec---CCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            36899999 99   9999999998766521  11     4578999999999999999999999965677777766

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.41  E-value=2.5e-12  Score=67.38  Aligned_cols=64  Identities=28%  Similarity=0.495  Sum_probs=52.4

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.|..| ..+..+.|.|
T Consensus         1 v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLP---TPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG-SARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEec---CCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCc-eEEEEEEEEE
Confidence            46899999 99   999999998776543221     45899999999999999999999999 5777777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.40  E-value=4.9e-12  Score=69.38  Aligned_cols=70  Identities=30%  Similarity=0.428  Sum_probs=56.8

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccC--------CCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIP--------GRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~--------~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      |+.+.|.|.+. .|   .|.+.|++++..+.        ...+     ...|.|.++..+|.|.|.|.+.|..| .....
T Consensus         1 G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~   76 (90)
T cd05726           1 GRTVTFQCEATGNP---QPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAG-SILTK   76 (90)
T ss_pred             CCEEEEEEECCccC---CCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCC-ceEEE
Confidence            67899999998 89   99999998775421        1111     35799999999999999999999999 57788


Q ss_pred             EEEEEcCc
Q psy11131        135 AELQLGGT  142 (150)
Q Consensus       135 ~~l~v~~~  142 (150)
                      +.|.|.+.
T Consensus        77 ~~l~V~~~   84 (90)
T cd05726          77 AYLEVTDV   84 (90)
T ss_pred             EEEEEeec
Confidence            88888764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=4.7e-12  Score=66.89  Aligned_cols=67  Identities=27%  Similarity=0.489  Sum_probs=53.0

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEee-cCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFK-DGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~-~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |+.+.|.|.+. .|   .|.+.|.+ ++..+.....     ...|.|..+..+|.|.|.|.+.|..| ..+.++.|.|
T Consensus         1 G~~~~l~C~~~g~P---~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDP---EPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAG-EATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcC---CCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCC-eEEEEEEEEC
Confidence            67899999999 89   99999997 4554433221     45789999999999999999999999 5666666653

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.38  E-value=9.1e-12  Score=64.80  Aligned_cols=63  Identities=22%  Similarity=0.477  Sum_probs=49.2

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      |+.+.|.|.+. .|   .|.+.|.+++..+.....    ...|.|.++  .|.|.|.|.+.|..| ....++.|
T Consensus         1 G~~v~L~C~a~G~P---~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G-~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAP---MPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLG-MIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecC---CCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCC-EEEEEEEE
Confidence            57899999999 99   999999999877654322    346777776  478999999999999 45555544

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.38  E-value=5.2e-12  Score=67.24  Aligned_cols=75  Identities=19%  Similarity=0.443  Sum_probs=57.4

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      .+.+.|....+.+|+.+.|.|.+. .|.  ...+.|++++..+...  ...|.+.++ .+|+|.|.|.+.+.   ..+..
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~--~~~~~W~kng~~l~~~--~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~   73 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPE--QNSTQWYHNGKLLETT--TNSYRIRAA-NNDSGEYRCQTQGS---SLSDP   73 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCC--CccEEEEECCEEeecc--CCeEEEeec-ccCCEEeEEECCCC---cCCCC
Confidence            345567778889999999999998 661  3579999999877332  467889888 99999999999864   24555


Q ss_pred             EEEE
Q psy11131        135 AELQ  138 (150)
Q Consensus       135 ~~l~  138 (150)
                      +.|.
T Consensus        74 v~l~   77 (78)
T cd05752          74 VHLE   77 (78)
T ss_pred             EEEe
Confidence            5554

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.37  E-value=7.7e-12  Score=66.48  Aligned_cols=60  Identities=15%  Similarity=0.306  Sum_probs=49.3

Q ss_pred             EEEEec-CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         74 FQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        74 l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      |.|.+. .|   .|.+.|++++..+.....             ...|.|..+..+|.|.|.|.|.|..| ....++.+
T Consensus         3 i~~~v~G~P---~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G-~~~~~~~~   76 (79)
T cd05855           3 IPFTVKGNP---KPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYG-EDEKNVSA   76 (79)
T ss_pred             EEEEEeEeC---CCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCc-ccceEEEe
Confidence            678888 99   999999999988754321             34789999999999999999999999 46666554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.37  E-value=8.8e-12  Score=66.03  Aligned_cols=64  Identities=31%  Similarity=0.476  Sum_probs=50.7

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCC---cc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGR---TS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~---~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|.|.+. .|   .|.+.|++++......   .+      ...|.|.++..+|.|.|.|.+.|..| ..+..+.|.|
T Consensus         1 a~l~C~~~G~P---~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G-~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHP---TPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAG-SISANATLTV   74 (75)
T ss_pred             CEeEeeccccc---CCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCC-EEEeeEEEEE
Confidence            36889999 99   9999999987532111   11      35789999999999999999999999 5777777776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG4222|consensus

Probab=99.34  E-value=7.6e-12  Score=92.20  Aligned_cols=117  Identities=32%  Similarity=0.528  Sum_probs=97.9

Q ss_pred             CCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCC
Q psy11131          9 GPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGP   85 (150)
Q Consensus         9 ~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~   85 (150)
                      -.|+.+..  .+|.|.+++..|.|.|.|.+.|..|...+...|+|+++|.+...+....+..|..+.|.|... .|   .
T Consensus       268 ~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP---~  344 (1281)
T KOG4222|consen  268 RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNP---P  344 (1281)
T ss_pred             ccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCC---C
Confidence            34555444  789999999999999999999999999999999999999988888878888899999999999 99   9


Q ss_pred             cEEEEeecCcccCCC------c--c-----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         86 YLIAWFKDGRQIPGR------T--S-----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        86 ~~~~w~~~~~~~~~~------~--~-----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |.+.|.+.+...-..      .  +     ...|.+.++...|.|.|.|...+..+
T Consensus       345 PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~  400 (1281)
T KOG4222|consen  345 PAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAG  400 (1281)
T ss_pred             cceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccc
Confidence            999998876531111      0  1     45899999999999999999776665

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.34  E-value=5.3e-11  Score=66.30  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=56.8

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeecCcccCCCc--c------------eeeEEEccCCCCC-CceEEEE
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKDGRQIPGRT--S------------STSLVINPVGRED-RGIYQCI  122 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~~~~~~~~~--~------------~~~l~~~~~~~~~-~g~y~C~  122 (150)
                      .+....+.+|+.+.|.|.+. .|   .| .+.|.+++..+....  +            .+.|.|.++..+| .|.|.|.
T Consensus         7 ~~~~~~~~~G~~v~L~C~~~g~P---~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~   83 (98)
T cd05758           7 SEATQYAILGDKGRVECFIFSTP---PPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCT   83 (98)
T ss_pred             CCCcEEEeCCCcEEEEEEEcccC---CCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEE
Confidence            34556688999999999999 88   88 699999887665321  1            1479999999844 8999999


Q ss_pred             EEeCCCCceeeeEEE
Q psy11131        123 ARRSDGDVAQGSAEL  137 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l  137 (150)
                      |.|..| .....+.|
T Consensus        84 A~N~~G-~~~~~~~L   97 (98)
T cd05758          84 AWNSFG-SGTAIISL   97 (98)
T ss_pred             EEcCCC-cccEEEEe
Confidence            999999 45555443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.33  E-value=2.4e-11  Score=65.15  Aligned_cols=61  Identities=13%  Similarity=0.238  Sum_probs=49.7

Q ss_pred             EEEEec-CCCCCCcEEEEeecCcccCCCcc---------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         74 FQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        74 l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      |.|.+. .|   .|.+.|++++..+.....               ...|.|.++..+|.|.|.|.|.|..| ..+.++.+
T Consensus         3 i~~~v~G~P---~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G-~~~~~~~~   78 (81)
T cd04971           3 IPFTVRGNP---KPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYG-QDSKSISA   78 (81)
T ss_pred             EEEEeEeeC---CCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCC-CeeeEEEe
Confidence            678888 99   999999999987764431               23699999999999999999999999 56666555


Q ss_pred             E
Q psy11131        138 Q  138 (150)
Q Consensus       138 ~  138 (150)
                      .
T Consensus        79 ~   79 (81)
T cd04971          79 H   79 (81)
T ss_pred             e
Confidence            3

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.33  E-value=2.2e-11  Score=66.76  Aligned_cols=67  Identities=27%  Similarity=0.427  Sum_probs=52.2

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecC----cccCCC-------------c----ceeeEEEccCCCCCCceEEEEEEeC
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDG----RQIPGR-------------T----SSTSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~----~~~~~~-------------~----~~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      |+.+.|.|.+. .|   .|.+.|++++    ..+...             .    ....|.|.++..+|+|.|.|.|.|.
T Consensus         1 G~~v~l~C~v~g~P---~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   77 (90)
T cd04974           1 GSDVEFHCKVYSDA---QPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS   77 (90)
T ss_pred             CCcEEEEEEEeCCC---CCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence            67899999999 99   9999999853    211100             0    0246889999999999999999999


Q ss_pred             CCCceeeeEEEEE
Q psy11131        127 DGDVAQGSAELQL  139 (150)
Q Consensus       127 ~g~~~~~~~~l~v  139 (150)
                      .| ....++.|.|
T Consensus        78 ~G-~~~~sa~L~V   89 (90)
T cd04974          78 IG-PSHHSAWLTV   89 (90)
T ss_pred             cC-cccCCEEEEe
Confidence            99 5777887776

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.32  E-value=2.6e-11  Score=64.36  Aligned_cols=64  Identities=30%  Similarity=0.540  Sum_probs=53.1

Q ss_pred             EEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         73 NFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        73 ~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      .|.|.+. .|   .|.+.|++++..+.....        ...|.|..+..+|.|.|.|.+.|..| ....++.|.|.
T Consensus         2 ~L~C~v~g~P---~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIP---LPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAG-VDEDISSLFVE   74 (76)
T ss_pred             EeEeEeeecC---CCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCC-CcceEEEEEEE
Confidence            5889999 99   999999999877653321        35799999999999999999999999 57788888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.32  E-value=4e-11  Score=64.91  Aligned_cols=67  Identities=18%  Similarity=0.301  Sum_probs=53.0

Q ss_pred             CCcEEEEEEec-C--CCCCCcEEEEeecCcccCCC-------------cceeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         69 DGSANFQCEIT-P--YDSGPYLIAWFKDGRQIPGR-------------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        69 g~~~~l~C~~~-~--p~~~~~~~~w~~~~~~~~~~-------------~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      |+.+.|.|.+. .  |   .+.+.|.+.+..+...             ...+.|.|.++...|+|.|.|.+.|..+ ..+
T Consensus         1 Ge~~~L~C~~~g~~~~---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~-~~~   76 (84)
T cd05742           1 GETLVLNCTVLTELNE---GVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTM-DQK   76 (84)
T ss_pred             CCeEEEEEEEEeCCCc---cEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCC-ceE
Confidence            67899999999 7  7   8999998765433211             0146899999999999999999999988 566


Q ss_pred             eeEEEEE
Q psy11131        133 GSAELQL  139 (150)
Q Consensus       133 ~~~~l~v  139 (150)
                      .+..+.|
T Consensus        77 ~s~~v~v   83 (84)
T cd05742          77 ESTKVNI   83 (84)
T ss_pred             EEEEEEE
Confidence            7777665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.31  E-value=3.2e-11  Score=66.52  Aligned_cols=73  Identities=22%  Similarity=0.359  Sum_probs=56.5

Q ss_pred             cEEEecCCcEEEEEEec-C-----CCCCCcEEEEeecCcccCCC----cc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         63 LLSVHLDGSANFQCEIT-P-----YDSGPYLIAWFKDGRQIPGR----TS----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~-----p~~~~~~~~w~~~~~~~~~~----~~----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ...+.+|+.+.|.|.+. .     |   .+.+.|++++..+...    .+    ...|.|.++..+|+|.|.|.+.|..|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p---~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSP---GLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCC---CceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence            34567899999999887 4     5   7899999988653321    11    45789999999999999999999988


Q ss_pred             CceeeeEEEEE
Q psy11131        129 DVAQGSAELQL  139 (150)
Q Consensus       129 ~~~~~~~~l~v  139 (150)
                       ..+..+.|.|
T Consensus        85 -~~~~~~~L~v   94 (94)
T cd05756          85 -CMKVSISLTV   94 (94)
T ss_pred             -cEEEEEEEEC
Confidence             5666666653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.31  E-value=2.8e-11  Score=66.33  Aligned_cols=67  Identities=28%  Similarity=0.452  Sum_probs=52.6

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeec----CcccCCCcc-----------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKD----GRQIPGRTS-----------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~----~~~~~~~~~-----------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      |+.+.|.|.+. .|   .|.+.|++.    +..+.....                 ...|.|.++..+|.|.|.|.+.|.
T Consensus         1 G~~v~L~C~~~g~P---~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   77 (90)
T cd05858           1 GSTVEFVCKVYSDA---QPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS   77 (90)
T ss_pred             CCeEEEEEEEecCC---CCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence            67899999999 99   999999974    222211100                 247999999999999999999999


Q ss_pred             CCCceeeeEEEEE
Q psy11131        127 DGDVAQGSAELQL  139 (150)
Q Consensus       127 ~g~~~~~~~~l~v  139 (150)
                      .| ....++.|.|
T Consensus        78 ~G-~~~~~a~L~V   89 (90)
T cd05858          78 IG-ISHHSAWLTV   89 (90)
T ss_pred             CC-cccceEEEEE
Confidence            99 5777777776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.30  E-value=2e-11  Score=64.98  Aligned_cols=63  Identities=25%  Similarity=0.474  Sum_probs=47.4

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCc--c------eeeEEEccCCC----CCCceEEEEEEeCCCCceeeeEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S------STSLVINPVGR----EDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~------~~~l~~~~~~~----~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      +.|.|.+. .|   .|.+.|++++..+....  .      ...|.|..+..    +|.|.|.|.|.|..|...+..+.|
T Consensus         1 i~l~C~~~G~P---~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733           1 IVIKCEAKGNP---PPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeeCcccC---CCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            46899999 99   99999999987764321  1      46788877643    689999999999999545554443

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.30  E-value=9.6e-11  Score=63.54  Aligned_cols=74  Identities=24%  Similarity=0.453  Sum_probs=57.8

Q ss_pred             CCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131         60 NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--STSLVINPVGREDRGIYQCIARRSDGDVAQGSA  135 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~  135 (150)
                      .|....+.+|+.+.|.|.+.  .|   .+.+.|++++..+.....  ...|.|..+..+|.|.|.|.+.|..| .....+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~---~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g-~~~~~~   82 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSP---AYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLD-TDEATA   82 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCC---CcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCC-eEeEEE
Confidence            45566788999999999986  56   889999998765432221  56899999999999999999999988 455554


Q ss_pred             EE
Q psy11131        136 EL  137 (150)
Q Consensus       136 ~l  137 (150)
                      .|
T Consensus        83 ~l   84 (85)
T cd05754          83 TL   84 (85)
T ss_pred             EE
Confidence            43

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.29  E-value=3.8e-11  Score=63.84  Aligned_cols=63  Identities=27%  Similarity=0.507  Sum_probs=46.1

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCc--c------eeeEEEccCCC----CCCceEEEEEEeCCCCceeeeEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S------STSLVINPVGR----EDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~------~~~l~~~~~~~----~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      +.|.|.+. .|   .|.+.|++++..+....  .      ...|.|..+..    .|.|.|.|.|.|..|...++.+.|
T Consensus         1 ~~l~C~a~G~P---~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKP---PPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccC---CCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            46899999 99   99999999987653211  1      45677776654    368999999999999544544443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.28  E-value=4.8e-11  Score=64.08  Aligned_cols=67  Identities=30%  Similarity=0.549  Sum_probs=51.6

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCc--c---cCCCc---c-----eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGR--Q---IPGRT---S-----STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~---~~~~~---~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      |+.+.|.|.+. .|   .|.+.|+++..  .   +....   .     ...|.|.++..+|.|.|.|.+.|..| .....
T Consensus         1 G~~v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~   76 (81)
T cd05765           1 GETASFHCDVTGRP---PPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGG-LLRAN   76 (81)
T ss_pred             CCcEEEEeeccccC---CCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCc-eEEEE
Confidence            67899999999 99   99999998632  1   11111   0     35799999999999999999999999 56666


Q ss_pred             EEEEE
Q psy11131        135 AELQL  139 (150)
Q Consensus       135 ~~l~v  139 (150)
                      +.|.|
T Consensus        77 ~~l~v   81 (81)
T cd05765          77 FPLSV   81 (81)
T ss_pred             EEEeC
Confidence            66653

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.27  E-value=1.1e-10  Score=64.07  Aligned_cols=60  Identities=28%  Similarity=0.555  Sum_probs=47.5

Q ss_pred             cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc--c----eeeEEEccCC-CCCCceEEEEEEeCCCCc
Q psy11131         68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S----STSLVINPVG-REDRGIYQCIARRSDGDV  130 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~----~~~l~~~~~~-~~~~g~y~C~~~~~~g~~  130 (150)
                      .+..+.|.|.+. .|   .+.+.|++++..+....  .    ...|.|.++. .+|.|.|.|.+.|..|..
T Consensus        18 ~~~~~~l~C~~~g~p---~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~   85 (91)
T cd04967          18 DEGKVSLNCRARGSP---PPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTV   85 (91)
T ss_pred             CCCEEEEEEeeeEcC---CCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEE
Confidence            345799999999 99   99999999988763221  1    4577887776 489999999999999943

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.27  E-value=1.3e-10  Score=63.58  Aligned_cols=77  Identities=17%  Similarity=0.320  Sum_probs=58.9

Q ss_pred             CCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCc----c----eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT----S----STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~----~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      +....+.+|+.+.|.|....|   .+.+.|++++..+....    .    ...|.|.++..+|.|.|.|.+.+..+....
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~p---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~   79 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKSN---LASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTL   79 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCCC---CceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeE
Confidence            344567889999999997766   77899999887654431    1    356889999999999999999977654556


Q ss_pred             eeEEEEEc
Q psy11131        133 GSAELQLG  140 (150)
Q Consensus       133 ~~~~l~v~  140 (150)
                      .++.|.|.
T Consensus        80 ~~~~l~V~   87 (89)
T cd04979          80 ATYSLNVL   87 (89)
T ss_pred             eEEEEEEe
Confidence            66666664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.27  E-value=4.5e-11  Score=62.46  Aligned_cols=53  Identities=28%  Similarity=0.378  Sum_probs=45.0

Q ss_pred             EEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         73 NFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        73 ~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|.|.+. .|   .|.+.|++++..+.....     ...|.|.++..+|+|.|+|.+.+...
T Consensus         2 ~l~c~v~g~P---~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~   60 (72)
T cd07702           2 RLTPKVKAFP---APEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQY   60 (72)
T ss_pred             eEEeeEEEcC---CCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcccc
Confidence            5889999 99   999999999987654321     45799999999999999999999855

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.26  E-value=1.8e-10  Score=62.37  Aligned_cols=64  Identities=22%  Similarity=0.460  Sum_probs=53.0

Q ss_pred             CCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .|....+..|+++.|.|.+..+   .+.+.|.+++..+.....     ...|.|.++...|+|.|.|.+...
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~~---~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKSN---LARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCCC---CCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            3556778899999999997655   678999999988765421     467999999999999999999865

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.25  E-value=8.5e-11  Score=62.47  Aligned_cols=63  Identities=27%  Similarity=0.428  Sum_probs=46.0

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCC--Ccc------eeeEEEccCC----CCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPG--RTS------STSLVINPVG----REDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~--~~~------~~~l~~~~~~----~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      +.|.|.+. .|   .|.+.|++++..+..  ...      ...|.|..+.    .+|.|.|.|.|.|..|...+..+.|
T Consensus         1 ~~l~C~~~G~P---~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875           1 IIIECEAKGNP---VPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CEEEEeccccC---CCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            46899999 99   999999999875421  111      4577877653    2468999999999999655555443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.25  E-value=2.4e-10  Score=61.81  Aligned_cols=71  Identities=21%  Similarity=0.433  Sum_probs=56.2

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQG  133 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~  133 (150)
                      ..+..|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|..+..+|.|.|.|.+.|..| ....
T Consensus         4 ~~~~~G~~~~l~C~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g-~~~~   79 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNP---RPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG-SINH   79 (85)
T ss_pred             eEecCCCcEEEEEEcCCCC---CCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCc-eEEE
Confidence            3456799999999999 88   899999998876543211         34688889999999999999999988 4666


Q ss_pred             eEEEE
Q psy11131        134 SAELQ  138 (150)
Q Consensus       134 ~~~l~  138 (150)
                      ++.|.
T Consensus        80 ~~~l~   84 (85)
T cd05729          80 TYKVD   84 (85)
T ss_pred             EEEEe
Confidence            66654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.25  E-value=5e-10  Score=61.95  Aligned_cols=76  Identities=22%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc--c------------eeeEEEccCCCCC-CceEEEE
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S------------STSLVINPVGRED-RGIYQCI  122 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~------------~~~l~~~~~~~~~-~g~y~C~  122 (150)
                      .......+.+|+.+.|.|.+. .|.  +..+.|.+++..+....  +            .+.|.|.++...| .|.|.|.
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~--P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~   83 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPP--PDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCT   83 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCC--CcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEE
Confidence            445567788999999999997 661  55778988766554321  1            5789999997766 7899999


Q ss_pred             EEeCCCCceeeeEEE
Q psy11131        123 ARRSDGDVAQGSAEL  137 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l  137 (150)
                      |.|.+| .....+.|
T Consensus        84 a~N~~G-~d~~~i~L   97 (98)
T cd05898          84 AWNSFG-SGTAIIQL   97 (98)
T ss_pred             EEeCCc-cceEEEEe
Confidence            999999 45555544

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.25  E-value=7.4e-11  Score=63.08  Aligned_cols=65  Identities=26%  Similarity=0.326  Sum_probs=49.6

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccC--------CCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIP--------GRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~--------~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      +.|.|.+. .|   .|.+.|++.+....        ...+     ...|.|..+..+|.|.|.|.+.|..|...++.+.|
T Consensus         1 v~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYP---PPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeC---CCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            46899999 99   99999998643211        0111     46799999999999999999999999655777666


Q ss_pred             EE
Q psy11131        138 QL  139 (150)
Q Consensus       138 ~v  139 (150)
                      .|
T Consensus        78 ~~   79 (79)
T cd05734          78 TV   79 (79)
T ss_pred             eC
Confidence            53

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.23  E-value=4.4e-10  Score=60.74  Aligned_cols=69  Identities=19%  Similarity=0.325  Sum_probs=52.2

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCC----------c--ceeeEEEccCCCCCCceEEEEEEeCCC-Cceeee
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR----------T--SSTSLVINPVGREDRGIYQCIARRSDG-DVAQGS  134 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~----------~--~~~~l~~~~~~~~~~g~y~C~~~~~~g-~~~~~~  134 (150)
                      |+.+.|.|.+. .|   .+.+.|.+.+......          .  ....|.|.+++.+|+|.|.|.+.|..+ ...+.+
T Consensus         1 Ge~~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s   77 (84)
T cd05861           1 GETITVNCIVQGNE---VVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK   77 (84)
T ss_pred             CCcEEEEEEEECCC---ccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence            67899999999 88   8999998765422110          0  146899999999999999999998754 235666


Q ss_pred             EEEEEc
Q psy11131        135 AELQLG  140 (150)
Q Consensus       135 ~~l~v~  140 (150)
                      +.+.|.
T Consensus        78 v~i~V~   83 (84)
T cd05861          78 VNITVH   83 (84)
T ss_pred             EEEEEe
Confidence            777664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.20  E-value=2.1e-10  Score=60.63  Aligned_cols=60  Identities=28%  Similarity=0.520  Sum_probs=47.1

Q ss_pred             EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131         72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSA  135 (150)
Q Consensus        72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~  135 (150)
                      +.|.|.+.  .|   .+.+.|++++..+.....           ...|.|..+..+|.|.|.|.+.|..| ....++
T Consensus         1 ~~l~C~~~g~~P---~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~   73 (75)
T cd05750           1 LVLKCEATSEYP---SLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILG-NDTVTA   73 (75)
T ss_pred             CEEEEEccCCCC---CceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCC-ceeEEE
Confidence            36889987  57   899999999876643221           35789999999999999999999999 444443

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.20  E-value=2e-10  Score=60.89  Aligned_cols=59  Identities=25%  Similarity=0.512  Sum_probs=46.3

Q ss_pred             EEEEEEec--CCCCCCcEEEEeecCcccCCCc------------ceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      +.|.|.+.  .|   .+.+.|++++..+....            ....|.|.++..+|+|.|.|.+.|..| ....+
T Consensus         1 ~~L~C~a~~~~p---~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g-~~~~~   73 (76)
T cd05895           1 LVLRCETVSEYP---SLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLG-NDSVT   73 (76)
T ss_pred             CEEEEecccCCC---CCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCC-ceeEE
Confidence            46899976  46   78999999988774321            036799999999999999999999998 44444

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.19  E-value=3.3e-10  Score=62.19  Aligned_cols=62  Identities=21%  Similarity=0.379  Sum_probs=51.4

Q ss_pred             EEEecCCcEEEEEEec-C-----CCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         64 LSVHLDGSANFQCEIT-P-----YDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~-----p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..+.+|+...|.|... .     |   .|.+.|++++..+.....    ...|.|.++..+|+|.|+|.+.+..+
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~---~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~   76 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENT---LPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHN   76 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCC---CCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCC
Confidence            4567899999999875 2     4   789999999988765432    47899999999999999999998876

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.13  E-value=1.7e-09  Score=59.73  Aligned_cols=72  Identities=18%  Similarity=0.312  Sum_probs=52.8

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc---------CCCc--------ceeeEEEccCCCCCCceEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI---------PGRT--------SSTSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~---------~~~~--------~~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      ....+.+|+++.|.|.+. .|   .+.+.|.+.+..+         ....        ....|.|.++..+|.|.|.|.+
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~---~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~   81 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHD---NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSI   81 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCC---CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEE
Confidence            346788999999999999 88   8999998865422         0011        0358999999999999999999


Q ss_pred             EeCCCCceeeeEEEE
Q psy11131        124 RRSDGDVAQGSAELQ  138 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~  138 (150)
                      ....  .....+.+.
T Consensus        82 ~t~~--~~~~~~~~~   94 (95)
T cd05882          82 FTMP--VRTAKATVT   94 (95)
T ss_pred             Eeec--cccEEEEEE
Confidence            8733  234444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.13  E-value=6.1e-10  Score=59.43  Aligned_cols=71  Identities=28%  Similarity=0.529  Sum_probs=55.9

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ..+.+|+.+.|.|.+. .|   ...+.|.+++..+....  ..+.+..+..+|.|.|.|.+.+..+...+.++.|.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p---~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNP---PPQVQWYKNGSPINSSQ--NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEETTSEEEEEEEEESSS---SSEEEEEETTEEEEEES--SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEccc---ceeeeeeeeeeeeeeee--eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            4578899999999999 88   88999999887665322  237778888999999999999876645666666654

...

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.10  E-value=8e-10  Score=60.74  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=51.4

Q ss_pred             cEEEecCCcEEEEEEec--CCCCCCcEEEEeecCccc--CCCcc------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         63 LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI--PGRTS------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~--~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ...+.+|+.+.|.|...  .|   .+.+.|.+++..+  ..+.+      ...|.|.+++..|.|.|.|.|+|...
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P---~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYP---DLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCC---CCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence            35678899999999887  78   8999999987643  11221      57899999999999999999999765

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.08  E-value=4e-10  Score=60.75  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=36.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ++|.|.|++.+|+|.|+|.+.+..+..++.+.|.|..||
T Consensus        47 ~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP   85 (85)
T cd05853          47 GDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP   85 (85)
T ss_pred             CcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence            689999999999999999999999999999999999775

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.08  E-value=3.9e-09  Score=58.36  Aligned_cols=73  Identities=21%  Similarity=0.339  Sum_probs=52.5

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--------cc-cCCCc--------ceeeEEEccCCCCCCceEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--------RQ-IPGRT--------SSTSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--------~~-~~~~~--------~~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      ....+.+|+++.|.|.+. .|   .+.+.|++.+        .. .....        ....|.|.++..+|+|.|.|.+
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p---~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~   81 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQND---NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL   81 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCC---ceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence            446788999999999999 88   8999997521        11 11111        1357899999999999999999


Q ss_pred             EeCCCCceeeeEEEEE
Q psy11131        124 RRSDGDVAQGSAELQL  139 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v  139 (150)
                      .+..+  .+.++.|.|
T Consensus        82 ~t~~~--~~~~~~l~v   95 (95)
T cd07701          82 FTMPV--KTSKAYLTV   95 (95)
T ss_pred             EeecC--ccEEEEEEC
Confidence            97543  355555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.07  E-value=1.6e-09  Score=54.83  Aligned_cols=58  Identities=34%  Similarity=0.630  Sum_probs=46.8

Q ss_pred             cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc----ceeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT----SSTSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +|+.+.|.|... .+   .+.+.|++++..+....    ....|.|.++...|.|.|.|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDP---VPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCC---CCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999977 77   88999999887665211    156899999999999999999987654

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.05  E-value=6.8e-09  Score=56.90  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=53.4

Q ss_pred             EEEecCCcEEEEEEecCCCCCCcEEEEeecCc--ccC----CCcc----eeeEEEccCCCCCCceEEEEEEe-CCCCcee
Q psy11131         64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGR--QIP----GRTS----STSLVINPVGREDRGIYQCIARR-SDGDVAQ  132 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~--~~~----~~~~----~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~~  132 (150)
                      +...+|+.+.|.|....|   .+.+.|++.+.  ...    ....    ...|.|..+..+|+|.|.|.+.+ ..+ ...
T Consensus         6 ~~~~eG~~v~L~C~~~~p---~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~-~~~   81 (91)
T cd05871           6 VYGVENNSTFLECLPKSP---QASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFS-QTL   81 (91)
T ss_pred             EEEecCCcEEEEEECCCC---CceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCe-EEE
Confidence            456789999999985577   78999997432  111    1111    45799999999999999999984 555 455


Q ss_pred             eeEEEEEcC
Q psy11131        133 GSAELQLGG  141 (150)
Q Consensus       133 ~~~~l~v~~  141 (150)
                      ..+.|.|..
T Consensus        82 ~~~~l~v~~   90 (91)
T cd05871          82 AKYTLHVIE   90 (91)
T ss_pred             EEEEEEEec
Confidence            677777653

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.04  E-value=1e-09  Score=57.67  Aligned_cols=47  Identities=30%  Similarity=0.449  Sum_probs=40.2

Q ss_pred             ecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         5 ~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ++..+.|+.+.. ++|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        26 ~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852          26 LLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             ecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            345567887755 89999999999999999999999999888888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.02  E-value=1.4e-08  Score=56.07  Aligned_cols=75  Identities=13%  Similarity=0.190  Sum_probs=59.9

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcE-EEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYL-IAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~-~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      ....+.+|+.+.|.|.+. +|   .|. +.|.+++..+.....             .+.|.+.++..++.|.|+|.+.|.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP---~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~   87 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYP---KPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNS   87 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCC---CCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECC
Confidence            346788999999999999 99   887 999877553321110             478999999999999999999999


Q ss_pred             CCCceeeeEEEEEc
Q psy11131        127 DGDVAQGSAELQLG  140 (150)
Q Consensus       127 ~g~~~~~~~~l~v~  140 (150)
                      .. ..+.++.|.|.
T Consensus        88 ~~-~~s~tF~l~v~  100 (101)
T cd05860          88 DA-SASVTFNVYVN  100 (101)
T ss_pred             CC-eEEEEEEEEEe
Confidence            88 67788888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.98  E-value=1.1e-08  Score=55.56  Aligned_cols=70  Identities=20%  Similarity=0.298  Sum_probs=50.7

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCC----C----------cceeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG----R----------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQG  133 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~----~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~  133 (150)
                      |+.+.|.|.+. .+.. ...+.|...+.....    .          ...+.|.|.++...|.|.|.|.+.|..+ ....
T Consensus         1 Ge~~~L~C~~~~~~~~-~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~-~~~~   78 (86)
T cd05862           1 GEKLVLNCTARTELNV-GIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQM-IAKN   78 (86)
T ss_pred             CCcEEEEEEEEeCCCC-cEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecce-Eecc
Confidence            67899999997 4410 467899775542211    1          0156899999999999999999999887 5666


Q ss_pred             eEEEEEc
Q psy11131        134 SAELQLG  140 (150)
Q Consensus       134 ~~~l~v~  140 (150)
                      ...|.|+
T Consensus        79 ~t~~~V~   85 (86)
T cd05862          79 STIVIVH   85 (86)
T ss_pred             cEEEEEe
Confidence            6666664

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.98  E-value=2.7e-09  Score=54.59  Aligned_cols=52  Identities=31%  Similarity=0.767  Sum_probs=41.8

Q ss_pred             CCcEEEEEEe-c-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEE
Q psy11131         69 DGSANFQCEI-T-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        69 g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      |+.+.|.|.+ . .+   ...+.|.+++........          ...|.|.++..+|+|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPP---PTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSS---TSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCC---CcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6889999999 5 77   899999998876543322          112999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.97  E-value=3.7e-09  Score=58.80  Aligned_cols=51  Identities=24%  Similarity=0.260  Sum_probs=43.2

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ++..+.++.+..    +.|.|.++..+|+|.|+|.+.|..|...+.+.|.|.+.|
T Consensus        40 ~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P   94 (98)
T cd05762          40 QIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP   94 (98)
T ss_pred             EecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence            344556666652    779999999999999999999999999999999999765

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.97  E-value=1.4e-08  Score=55.65  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=56.7

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCC-----cceeeEEEccCCCCCCceEEEEEEeCC-C-
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIYQCIARRSD-G-  128 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~~-g-  128 (150)
                      .+...|. ..+..|+.+.|.|....+   ...+.|++++......     .....+.|.++..+|+|.|.|.+.+.. + 
T Consensus         4 ~L~a~p~-~vV~~G~~VtL~C~~~~~---~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~   79 (91)
T cd05751           4 SLWAEPS-SVVPLGKPVTLRCQGPYG---AVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALW   79 (91)
T ss_pred             EEEecCC-CccCCCCcEEEEEecCCC---CCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCcc
Confidence            3333333 357799999999988755   6789999887653321     115679999999999999999998752 2 


Q ss_pred             CceeeeEEEEE
Q psy11131        129 DVAQGSAELQL  139 (150)
Q Consensus       129 ~~~~~~~~l~v  139 (150)
                      ...+..+.|.|
T Consensus        80 S~~Sd~lel~V   90 (91)
T cd05751          80 SEPSDPLELVV   90 (91)
T ss_pred             CCCCCcEEEEe
Confidence            23455566655

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.96  E-value=2.1e-09  Score=58.19  Aligned_cols=39  Identities=28%  Similarity=0.419  Sum_probs=36.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ++|.|.+++..|+|.|+|.+.|..|..++.+.|.|..+|
T Consensus        47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P   85 (85)
T cd05854          47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP   85 (85)
T ss_pred             eEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence            789999999999999999999999999999999998764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>smart00409 IG Immunoglobulin

Probab=98.96  E-value=4.9e-08  Score=52.25  Aligned_cols=73  Identities=29%  Similarity=0.587  Sum_probs=55.6

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec-CcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD-GRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~-~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      ...+..|+.+.|.|.+. .+   .+.+.|.++ +..+.....        ...|.+.++...|.|.|.|.+.+..+ ...
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~-~~~   78 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG-SAS   78 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC-eEE
Confidence            34567899999999999 76   889999987 555532221        36799999999999999999997776 344


Q ss_pred             eeEEEEE
Q psy11131        133 GSAELQL  139 (150)
Q Consensus       133 ~~~~l~v  139 (150)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00409       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            4466654

>smart00410 IG_like Immunoglobulin like

Probab=98.96  E-value=4.9e-08  Score=52.25  Aligned_cols=73  Identities=29%  Similarity=0.587  Sum_probs=55.6

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec-CcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD-GRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~-~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      ...+..|+.+.|.|.+. .+   .+.+.|.++ +..+.....        ...|.+.++...|.|.|.|.+.+..+ ...
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~-~~~   78 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG-SAS   78 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC-eEE
Confidence            34567899999999999 76   889999987 555532221        36799999999999999999997776 344


Q ss_pred             eeEEEEE
Q psy11131        133 GSAELQL  139 (150)
Q Consensus       133 ~~~~l~v  139 (150)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00410       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            4466654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.94  E-value=1.4e-08  Score=56.21  Aligned_cols=75  Identities=20%  Similarity=0.340  Sum_probs=52.1

Q ss_pred             cEEEecCCcEEEEEEec-------CC--CCCCcEEEEeecCcccCCCc-------c----eeeEEEccCCCCCCceEEEE
Q psy11131         63 LLSVHLDGSANFQCEIT-------PY--DSGPYLIAWFKDGRQIPGRT-------S----STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-------~p--~~~~~~~~w~~~~~~~~~~~-------~----~~~l~~~~~~~~~~g~y~C~  122 (150)
                      ...+.+|+++.|.|...       ++  ..-...+.|++++..+....       +    ...|.|.++..+|+|.|.|.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            35678999999999961       00  10044899999864333211       1    56899999999999999999


Q ss_pred             EEeCCCCceeeeEEEE
Q psy11131        123 ARRSDGDVAQGSAELQ  138 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~  138 (150)
                      +.|... .....+.|.
T Consensus        89 ~rN~t~-C~~~~i~l~  103 (104)
T cd05896          89 LRNSTY-CMKVSMSLT  103 (104)
T ss_pred             ECCCCc-ceEEEEEEE
Confidence            998765 444555444

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.93  E-value=8.5e-09  Score=56.60  Aligned_cols=64  Identities=19%  Similarity=0.243  Sum_probs=50.8

Q ss_pred             CcEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecCccc-CCCcc-----eeeEEEccCCCCCCc-eEEEEEEeCCC
Q psy11131         62 PLLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDGRQI-PGRTS-----STSLVINPVGREDRG-IYQCIARRSDG  128 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~~-~~~~~-----~~~l~~~~~~~~~~g-~y~C~~~~~~g  128 (150)
                      ....+.+|+.+.|.|.. . .|   .|.+.|..++... ....+     ...|.|.++...|.| .|.|.|.+...
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P---~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAV---PLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCC---CCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            45678899999999975 5 88   9999999765432 22222     579999999999999 79999998764

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.93  E-value=2e-08  Score=53.35  Aligned_cols=54  Identities=19%  Similarity=0.398  Sum_probs=44.8

Q ss_pred             EEEEEEec--CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ++|.|...  .|   ++.+.|++++..+.....          .+.|.|.....+|.+.|.|.+.|..+
T Consensus         2 ~~L~C~s~~skP---~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~   67 (80)
T cd05885           2 VELTCLSPRSKP---AATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPAL   67 (80)
T ss_pred             EEEEEeCCCccC---CCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhh
Confidence            68999998  88   999999999987754221          35788888888899999999999876

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.90  E-value=1.8e-08  Score=55.37  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=49.4

Q ss_pred             EEEecCCcEEEEEEec--C-CCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         64 LSVHLDGSANFQCEIT--P-YDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~--~-p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..+.+|....|.|+-.  . .....+.+.|++++..+.....       ...|.|.++..+|+|.|+|.+.+..+
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence            3456788899999852  2 1112679999999988764321       35799999999999999999998765

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.90  E-value=3.9e-09  Score=57.17  Aligned_cols=39  Identities=23%  Similarity=0.385  Sum_probs=36.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ++|.|.+++..|+|.|+|.+.|..|..++.+.|.|.++|
T Consensus        47 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP   85 (85)
T cd04970          47 GDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP   85 (85)
T ss_pred             ceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence            789999999999999999999999999999999998764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.90  E-value=9e-09  Score=54.09  Aligned_cols=47  Identities=32%  Similarity=0.424  Sum_probs=39.1

Q ss_pred             ecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         5 ~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ++..+.++.+.. ++|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        26 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969          26 LLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             EcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            344556666655 78999999999999999999999999888888765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.88  E-value=1.5e-08  Score=55.71  Aligned_cols=62  Identities=16%  Similarity=0.242  Sum_probs=47.2

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC--------------CCcc-----------eeeEEEccCCCCCCc
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP--------------GRTS-----------STSLVINPVGREDRG  117 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~--------------~~~~-----------~~~l~~~~~~~~~~g  117 (150)
                      +.+.+|+.+.|.|... .+   .+.+.|++++....              ...+           ...|.|.++..+|+|
T Consensus         2 v~~~~G~~VtL~C~~s~~~---~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsg   78 (94)
T cd07690           2 VLGKKGDTAELPCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSD   78 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCC---CcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCE
Confidence            3567899999999998 88   89999985442110              0000           356999999999999


Q ss_pred             eEEEEEEeCCC
Q psy11131        118 IYQCIARRSDG  128 (150)
Q Consensus       118 ~y~C~~~~~~g  128 (150)
                      .|.|.+.+..+
T Consensus        79 tY~C~v~~~~~   89 (94)
T cd07690          79 TYICEVEDKKE   89 (94)
T ss_pred             EEEEEECCccc
Confidence            99999997665

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.88  E-value=1.2e-08  Score=53.30  Aligned_cols=46  Identities=26%  Similarity=0.491  Sum_probs=37.7

Q ss_pred             cCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          6 VLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         6 ~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.++.++.+.. +.|.|.++..+|+|.|+|.+.|..|...+.+.|.|
T Consensus        25 ~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723          25 VIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            34455666544 78999999999999999999999999888888764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.88  E-value=6.4e-09  Score=56.68  Aligned_cols=39  Identities=33%  Similarity=0.472  Sum_probs=36.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ++|.|.++..+|+|.|+|.+.|..|.....+.|.|.++|
T Consensus        47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P   85 (88)
T cd05735          47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP   85 (88)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCC
Confidence            579999999999999999999999999999999998764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.86  E-value=1.3e-08  Score=53.73  Aligned_cols=43  Identities=35%  Similarity=0.449  Sum_probs=36.3

Q ss_pred             CCceEEeC---C--eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          9 GPRTRVLG---P--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         9 ~~~~~~~~---~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.|+.+..   +  +|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus        28 ~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892          28 TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            35666542   2  7999999999999999999999999999888875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.86  E-value=1e-08  Score=54.06  Aligned_cols=44  Identities=34%  Similarity=0.494  Sum_probs=36.1

Q ss_pred             CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .+.++.... ++|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        30 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745          30 VDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            344444433 78999999999999999999999999888888765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.86  E-value=1.2e-08  Score=55.66  Aligned_cols=45  Identities=31%  Similarity=0.583  Sum_probs=37.6

Q ss_pred             CCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131          8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus         8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      .+.++...++.|.|.++..+|+|.|+|.+.|..|.....+.|.|+
T Consensus        44 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          44 ATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ   88 (88)
T ss_pred             CCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence            344555555789999999999999999999999998888888774

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.86  E-value=1.4e-08  Score=55.60  Aligned_cols=47  Identities=28%  Similarity=0.400  Sum_probs=40.7

Q ss_pred             CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131          8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus         8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      ...|+.+.. +.|.|.++..+|+|.|+|.+.|..|.....+.|.|.+.
T Consensus        37 ~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~   84 (90)
T cd05726          37 SSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDV   84 (90)
T ss_pred             CCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeec
Confidence            345677654 78999999999999999999999999999999999864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.85  E-value=1.5e-08  Score=52.90  Aligned_cols=46  Identities=26%  Similarity=0.386  Sum_probs=36.7

Q ss_pred             cCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         6 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +..+.++....++|.|.++..+|+|.|+|.+.|..|.......+.|
T Consensus        24 l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976          24 ISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            3444555555588999999999999999999999888777766655

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.84  E-value=1.1e-07  Score=52.61  Aligned_cols=64  Identities=20%  Similarity=0.352  Sum_probs=47.1

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc---------cCCCc--------ceeeEEEccCCCCCCceEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ---------IPGRT--------SSTSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~---------~~~~~--------~~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      ....+.+|+.+.|.|.+. .+   .+.+.|++.+..         .....        ....|.|.++..+|+|.|.|.+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   81 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNND---NSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSL   81 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCC---CceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEE
Confidence            456788999999999998 77   789999742111         11010        1357899999999999999999


Q ss_pred             EeCCC
Q psy11131        124 RRSDG  128 (150)
Q Consensus       124 ~~~~g  128 (150)
                      .+...
T Consensus        82 ~~~~~   86 (95)
T cd05717          82 YTMPV   86 (95)
T ss_pred             ecCCC
Confidence            86543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.83  E-value=6.9e-08  Score=51.99  Aligned_cols=59  Identities=19%  Similarity=0.375  Sum_probs=48.2

Q ss_pred             cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEE
Q psy11131         63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ...+..|..+.|.|....+   ...+.|.+++..+..+.+    ...|.|..+...|+|.|.|.+.
T Consensus         5 ~~tv~~g~~v~L~C~~~s~---~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN---LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             EEEEecCCCEEEECCCCCC---CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            3567889999999988744   679999999987765433    4567788999999999999987

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.83  E-value=2.5e-08  Score=52.84  Aligned_cols=42  Identities=29%  Similarity=0.524  Sum_probs=36.9

Q ss_pred             CceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .++....+.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        34 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867          34 PRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             ceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            356655689999999999999999999999999888888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.82  E-value=2.3e-08  Score=51.93  Aligned_cols=45  Identities=29%  Similarity=0.383  Sum_probs=36.8

Q ss_pred             ecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131          5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL   49 (150)
Q Consensus         5 ~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   49 (150)
                      ++..+.++.+.. +.|.|.++..+|+|.|+|.+.|..|..+..+.|
T Consensus        23 ~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746          23 QVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             ECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            344456666654 789999999999999999999999988877765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.81  E-value=2.1e-08  Score=52.10  Aligned_cols=42  Identities=38%  Similarity=0.621  Sum_probs=35.0

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .++.... +.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        27 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725          27 GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            4444444 78999999999999999999999998888877764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.81  E-value=3.1e-08  Score=52.17  Aligned_cols=46  Identities=26%  Similarity=0.391  Sum_probs=36.9

Q ss_pred             cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +..+.++.+..    ..|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus        25 l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748          25 LKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             cCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            33445555532    57999999999999999999999999888887764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.80  E-value=2.3e-08  Score=53.36  Aligned_cols=47  Identities=30%  Similarity=0.459  Sum_probs=37.9

Q ss_pred             ecCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ++..+.++.+.+..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        33 ~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973          33 QLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             CCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            44555677777788999999999999999999998887776666553

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.80  E-value=3.2e-08  Score=52.26  Aligned_cols=44  Identities=32%  Similarity=0.551  Sum_probs=36.6

Q ss_pred             CCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131          9 GPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus         9 ~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..++....  +.|.|.++..+|+|.|.|.+.|..|..+..+.|.|.
T Consensus        30 ~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   75 (75)
T cd05763          30 ERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL   75 (75)
T ss_pred             ccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence            34555433  789999999999999999999999998888888773

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.80  E-value=2.5e-08  Score=52.62  Aligned_cols=43  Identities=35%  Similarity=0.472  Sum_probs=36.1

Q ss_pred             CCceEEeC-C----eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          9 GPRTRVLG-P----ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         9 ~~~~~~~~-~----~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.|+.+.. .    .|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus        28 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893          28 TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            35666643 2    6999999999999999999999999998888865

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.79  E-value=2.6e-08  Score=53.90  Aligned_cols=47  Identities=30%  Similarity=0.385  Sum_probs=40.0

Q ss_pred             ecCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ++..+.++....+.|.|.++..+|+|.|+|.+.|..|...+.+.|.|
T Consensus        39 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          39 PLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             ECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            44556677777789999999999999999999999999888887764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.76  E-value=1.4e-07  Score=52.92  Aligned_cols=73  Identities=21%  Similarity=0.189  Sum_probs=51.1

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc--------CCC-----------cc-----eeeEEEccCCCCCCc
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI--------PGR-----------TS-----STSLVINPVGREDRG  117 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~--------~~~-----------~~-----~~~l~~~~~~~~~~g  117 (150)
                      ...+.+|+.+.|.|... ..   ...+.|++.....        ...           .+     +.+|.|.++..+|.|
T Consensus         7 p~~~~~G~~V~L~v~~~p~~---~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G   83 (105)
T cd05774           7 PPQVAEGENVLLLVHNLPEN---LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG   83 (105)
T ss_pred             CCcccCCCCEEEEecCCCCC---ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence            34577899999999875 54   6689999853211        000           01     468999999999999


Q ss_pred             eEEEEEEeCCCCceeeeEEEE
Q psy11131        118 IYQCIARRSDGDVAQGSAELQ  138 (150)
Q Consensus       118 ~y~C~~~~~~g~~~~~~~~l~  138 (150)
                      .|.|.+.+.........+.|.
T Consensus        84 ~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          84 FYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEEEEeCCccEEEEEEEEE
Confidence            999999987643444455543

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.73  E-value=1.4e-07  Score=51.73  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCC--------C----------cc-----eeeEEEccCCCCCCceEEEEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG--------R----------TS-----STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~--------~----------~~-----~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      |+.+.|.|... ..   ...+.|++.......        .          .+     ...|.|.++..+|+|.|.|.+.
T Consensus         1 G~~VtL~c~~~~~~---~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPEN---LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCC---CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEE
Confidence            67899999887 55   778999875422110        0          00     4689999999999999999999


Q ss_pred             eCCCCceeeeEEEE
Q psy11131        125 RSDGDVAQGSAELQ  138 (150)
Q Consensus       125 ~~~g~~~~~~~~l~  138 (150)
                      ...+......+.|.
T Consensus        78 ~~~~~~~~~~~~l~   91 (92)
T cd05741          78 STNGVTENAKFFLR   91 (92)
T ss_pred             cCCCcEEEEEEEEE
Confidence            87664444555443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.72  E-value=1.3e-07  Score=60.39  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             CcEEEecCCcEEEEEEec-CCC--------CCCcEEEEeecCccc--C----C--------C---cceeeEEEccCCCCC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYD--------SGPYLIAWFKDGRQI--P----G--------R---TSSTSLVINPVGRED  115 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~--------~~~~~~~w~~~~~~~--~----~--------~---~~~~~l~~~~~~~~~  115 (150)
                      ....+.+|+++.|.|.+. .|.        ...+.+.|.+.+...  .    .        .   .+...|.|.++..+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            345678999999999986 441        125689999876431  0    0        0   114589999999999


Q ss_pred             CceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        116 RGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       116 ~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      +|.|.|.+.|..+ .....+.|.|..
T Consensus       110 sG~Y~C~a~N~~~-~~~~~i~L~V~~  134 (227)
T PHA02826        110 EGIYICTISSGNI-CEESTIRLTFDS  134 (227)
T ss_pred             CEEEEEEEEECCc-ceEEEEEEEEec
Confidence            9999999999776 456667777643

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.72  E-value=9.3e-08  Score=52.08  Aligned_cols=40  Identities=38%  Similarity=0.668  Sum_probs=35.0

Q ss_pred             EEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         13 RVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        13 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ....+.|.|.+++.+|+|.|.|.+.|..|.....+.|.|+
T Consensus        49 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (88)
T cd04968          49 SMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ   88 (88)
T ss_pred             EEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence            3345899999999999999999999999998888888774

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.71  E-value=6.7e-08  Score=50.46  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=32.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        36 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876          36 KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            79999999999999999999999999888888776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.69  E-value=2.9e-08  Score=54.31  Aligned_cols=36  Identities=28%  Similarity=0.480  Sum_probs=33.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..|.|.+++.+|+|.|+|.+.|..|...+.+.|.|.
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~   90 (90)
T cd04974          55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL   90 (90)
T ss_pred             ceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence            579999999999999999999999998888888873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.69  E-value=9.9e-08  Score=50.19  Aligned_cols=44  Identities=41%  Similarity=0.573  Sum_probs=35.1

Q ss_pred             CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ...++.... ++|.|.++...|+|.|.|.+.|..|..+..+.|.|
T Consensus        30 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764          30 NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            334444333 78999999999999999999999998888777764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.69  E-value=6.5e-08  Score=53.80  Aligned_cols=43  Identities=30%  Similarity=0.480  Sum_probs=35.5

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.|+.+..    ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus        52 ~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          52 DGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             CceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence            34666643    57999999999999999999999998887777754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.69  E-value=5.5e-08  Score=50.08  Aligned_cols=36  Identities=25%  Similarity=0.298  Sum_probs=31.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +.|.|.++..+|+|.|+|.+.|..|.......|++.
T Consensus        31 ~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863          31 HSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            689999999999999999999998887777666653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.68  E-value=8.4e-08  Score=52.90  Aligned_cols=42  Identities=26%  Similarity=0.288  Sum_probs=35.4

Q ss_pred             CceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .|+...++.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        53 ~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          53 SRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             ceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence            455555588999999999999999999999888888777764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.66  E-value=4.8e-07  Score=51.01  Aligned_cols=73  Identities=26%  Similarity=0.395  Sum_probs=51.5

Q ss_pred             cCCcEEEEEEec-CC---CCCCcEEEEeecC---c-c--c----C-------CC----------cceeeEEEccCCCCCC
Q psy11131         68 LDGSANFQCEIT-PY---DSGPYLIAWFKDG---R-Q--I----P-------GR----------TSSTSLVINPVGREDR  116 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p---~~~~~~~~w~~~~---~-~--~----~-------~~----------~~~~~l~~~~~~~~~~  116 (150)
                      .|+.+.|.|... .+   ......+.|++..   . .  +    .       ..          .....|.|.++...|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            478899999877 43   1125788998752   1 0  0    0       00          0046899999999999


Q ss_pred             ceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        117 GIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       117 g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      |.|.|.+.+..+ .....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~-~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIE-DEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCC-ceEEEEEEEEEE
Confidence            999999998766 567888888765

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.66  E-value=1.5e-07  Score=51.06  Aligned_cols=42  Identities=36%  Similarity=0.494  Sum_probs=35.5

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .|+.+..    +.|.|.++..+|+|.|.|.+.|..|...+.+.|.|
T Consensus        41 ~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          41 GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            4665543    57999999999999999999999999888887764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.66  E-value=2.1e-07  Score=51.38  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=37.0

Q ss_pred             CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .++....  +.|.|.++..+|+|.|+|.+.|..|.....+.|.|.+
T Consensus        49 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          49 EKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             CEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence            4454433  5799999999999999999999999988888888864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.65  E-value=1.5e-07  Score=49.81  Aligned_cols=39  Identities=28%  Similarity=0.354  Sum_probs=34.7

Q ss_pred             EeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         14 VLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        14 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..++.|.|.++..+|+|.|+|.+.|..|...+.+.|.|.
T Consensus        38 ~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868          38 VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            344689999999999999999999999999999988873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.64  E-value=8.9e-08  Score=52.99  Aligned_cols=35  Identities=34%  Similarity=0.642  Sum_probs=31.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v   51 (150)
                      ++|.|.+++.+|+|.|+|.+.|.. |...+.+.|.|
T Consensus        60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          60 STLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             eEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            579999999999999999999986 77888888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.63  E-value=2e-07  Score=49.09  Aligned_cols=44  Identities=32%  Similarity=0.507  Sum_probs=35.5

Q ss_pred             CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEE
Q psy11131          8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQV   51 (150)
Q Consensus         8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v   51 (150)
                      .+.++.... +.|.|.++..+|+|.|+|.+.|..|.. +..+.|.|
T Consensus        28 ~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738          28 SNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            456666655 789999999999999999999998873 56666665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.63  E-value=9.3e-08  Score=50.49  Aligned_cols=34  Identities=35%  Similarity=0.519  Sum_probs=31.3

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus        42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744          42 CLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             EEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            6999999999999999999999999888888764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.63  E-value=5.1e-07  Score=50.92  Aligned_cols=73  Identities=22%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             cCCcEEEEEEec-CC---CCCCcEEEEeecCcc--------cC----------CCcc---------eeeEEEccCCCCCC
Q psy11131         68 LDGSANFQCEIT-PY---DSGPYLIAWFKDGRQ--------IP----------GRTS---------STSLVINPVGREDR  116 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p---~~~~~~~~w~~~~~~--------~~----------~~~~---------~~~l~~~~~~~~~~  116 (150)
                      .|+.+.|.|... .|   ......+.|++....        +.          ...+         ...|.|.++..+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            478899999876 42   011457899874310        00          0001         34799999999999


Q ss_pred             ceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        117 GIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       117 g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      |.|.|.+.+..+ .....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~-~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLE-DESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEeccc-ceEEEEEEEEEE
Confidence            999999998877 577778887754

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.62  E-value=5.7e-07  Score=48.28  Aligned_cols=54  Identities=28%  Similarity=0.527  Sum_probs=39.8

Q ss_pred             EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +.|.|.+.  .|   .+.+.|++++..+.....             .+.|.+.....++.+.|.|.+.+...
T Consensus         2 ~~L~C~v~g~~P---~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l   70 (82)
T cd05759           2 YNLTCRARGAKP---AAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL   70 (82)
T ss_pred             EEEEEEEeCccC---CCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence            67899997  57   789999999876543211             23566666666778899999998754

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA03376 BARF1; Provisional

Probab=98.62  E-value=2e-07  Score=56.65  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=51.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      -+|.|.+++.+|.|.|+|.+..........-+|++..+..+...........-+...+.|.+- .|   .|.+.|..+..
T Consensus        87 vsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP---~P~~~Wle~~~  163 (221)
T PHA03376         87 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFP---HPHVQWLMPEG  163 (221)
T ss_pred             EEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcC---CchheeccccC
Confidence            578999999999999999998765444455555555443333322111122245678899966 89   99999987654

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.62  E-value=1.6e-07  Score=50.20  Aligned_cols=35  Identities=34%  Similarity=0.554  Sum_probs=32.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          47 GQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             cEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            68999999999999999999999999888888765

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.62  E-value=2.2e-07  Score=51.00  Aligned_cols=47  Identities=30%  Similarity=0.516  Sum_probs=35.5

Q ss_pred             ecCCCCceEEeC-C---eEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEE
Q psy11131          5 LVLPGPRTRVLG-P---ILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQV   51 (150)
Q Consensus         5 ~~~~~~~~~~~~-~---~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v   51 (150)
                      ++..+.|+.+.. +   .|.|.++..+|+|.|+|.+.|..|.. ...+.|.+
T Consensus        40 ~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          40 KIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            344556776653 3   79999999999999999999998875 44555544

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.62  E-value=4.8e-08  Score=53.46  Aligned_cols=35  Identities=34%  Similarity=0.510  Sum_probs=32.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence            47999999999999999999999999888888887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.61  E-value=1.3e-07  Score=49.60  Aligned_cols=66  Identities=29%  Similarity=0.604  Sum_probs=42.9

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC-----cccCCCcceeeEEEccCCCCCCceEEEEEEe
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG-----RQIPGRTSSTSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~-----~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      .+...+.......+. +.|.|.+.  .+   .+.+.|....     ...........|.+.++..+|.|.|.|.|.|
T Consensus         3 ~I~~~~~~~~~~~~~-~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    3 QISVPPPPVVTSGGS-VTLTCSAEGGPP---PPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEESTSEEETTEE-EEEEEEESSEES---SEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEcCCCcEeecee-EEEEEEEccccC---CeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            333334433333333 99999999  44   7899998110     0000111167899999999999999999986

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.60  E-value=2e-06  Score=47.35  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=45.4

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc--------CCCcc---------eeeEEEccCCCCCCceEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI--------PGRTS---------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~--------~~~~~---------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      ..+.+.+|+++.|.|.+. ..   ...+.|++.+..+        ..+.+         ...|.|..+..+|.|.|.|.+
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~---~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv   81 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNND---DSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQL   81 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCC---ccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEE
Confidence            346788999999999998 65   5667787654321        11111         456999999999999999999


Q ss_pred             Ee
Q psy11131        124 RR  125 (150)
Q Consensus       124 ~~  125 (150)
                      ..
T Consensus        82 ~t   83 (95)
T cd05881          82 YT   83 (95)
T ss_pred             Ec
Confidence            85

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.60  E-value=1.7e-07  Score=49.46  Aligned_cols=37  Identities=30%  Similarity=0.513  Sum_probs=33.6

Q ss_pred             eCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         15 LGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        15 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..+.|.|.+++.+|+|.|+|.+.|..|...+.+.|.|
T Consensus        39 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978          39 DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            3488999999999999999999999999888888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.59  E-value=2.6e-07  Score=49.24  Aligned_cols=42  Identities=36%  Similarity=0.457  Sum_probs=32.9

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEE
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQ   50 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~   50 (150)
                      +.|+.... ++|.|.++..+|+|.|.|.+.|..|.. +....|+
T Consensus        35 ~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734          35 AGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            45665544 889999999999999999999988865 4455554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.59  E-value=2.1e-07  Score=51.64  Aligned_cols=35  Identities=29%  Similarity=0.527  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          63 SSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence            57999999999999999999999999888888765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.59  E-value=2.1e-06  Score=49.19  Aligned_cols=68  Identities=15%  Similarity=0.273  Sum_probs=47.2

Q ss_pred             CCcEEEecCCcEEEEEEec-CC-CCCCcEEEEee---------------cCcccCCC-c----c----------eeeEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PY-DSGPYLIAWFK---------------DGRQIPGR-T----S----------STSLVI  108 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~---------------~~~~~~~~-~----~----------~~~l~~  108 (150)
                      +..+.+..|+.+.|.|... .. ......+.|..               ++...... .    +          ..++.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            3456778899999999987 32 11156899933               22221100 0    1          468999


Q ss_pred             ccCCCCCCceEEEEEEeCCC
Q psy11131        109 NPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .++...|.|.|.|.+.|.-+
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCC
Confidence            99999999999999998754

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.59  E-value=1.4e-07  Score=50.51  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ   50 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   50 (150)
                      +.|.|.++..+|+|.|+|.+.|..|.....+.|+
T Consensus        46 ~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971          46 GCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            4699999999999999999999999988777664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.58  E-value=2.3e-07  Score=50.99  Aligned_cols=35  Identities=40%  Similarity=0.565  Sum_probs=31.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .+|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          58 ASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence            37999999999999999999999998888777654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.58  E-value=1.2e-07  Score=49.45  Aligned_cols=35  Identities=40%  Similarity=0.689  Sum_probs=32.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus        36 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          36 KTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            68999999999999999999999998888887776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.57  E-value=4.5e-07  Score=48.08  Aligned_cols=36  Identities=25%  Similarity=0.461  Sum_probs=29.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCccee--EEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEAT--AEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~   52 (150)
                      +.|.|.++..+|+|.|+|.+.|..|...  ..+.|.|.
T Consensus        38 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760          38 RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            6899999999999999999999988764  34555543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.57  E-value=2.3e-07  Score=51.34  Aligned_cols=35  Identities=31%  Similarity=0.528  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.|.|.++..+|+|.|.|.+.|..|.....+.|.|
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          62 SSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence            57999999999999999999999999888877764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.57  E-value=1.6e-07  Score=50.63  Aligned_cols=36  Identities=28%  Similarity=0.493  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +.|.|.+++.+|+|.|.|.+.|..+..+..+.|.|+
T Consensus        49 s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v~   84 (84)
T cd05742          49 STLTIPNATLKDSGTYTCAASSGTMDQKESTKVNIH   84 (84)
T ss_pred             EEEEECCCChhhCEEEEEEEccCCCceEEEEEEEEC
Confidence            689999999999999999999998888888777663

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.56  E-value=1.8e-07  Score=51.04  Aligned_cols=46  Identities=46%  Similarity=0.662  Sum_probs=37.4

Q ss_pred             cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +..+.++.+..    ..|.|.++..+|+|.|.|.+.+..|..+..+.|.|
T Consensus        41 l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   41 LTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence            33455555543    68999999999999999999999888888888775

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.56  E-value=4.3e-07  Score=50.46  Aligned_cols=43  Identities=21%  Similarity=0.397  Sum_probs=35.3

Q ss_pred             CceEEeC-----CeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEEe
Q psy11131         10 PRTRVLG-----PILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVS   52 (150)
Q Consensus        10 ~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~   52 (150)
                      .|..+..     .+|.|.|++.+|.|.|.|.+.+ +.|..++.+.|+|.
T Consensus        51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence            4555443     8999999999999999999998 67777888888773

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.55  E-value=8.6e-07  Score=50.18  Aligned_cols=65  Identities=23%  Similarity=0.431  Sum_probs=48.9

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc--c------------CCCcc----------eeeEEEccCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ--I------------PGRTS----------STSLVINPVGRE  114 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~--~------------~~~~~----------~~~l~~~~~~~~  114 (150)
                      .+....+.+|+++.|.|... .+   ...+.|++....  .            ....+          ...|.|.++..+
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   80 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTST---FYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS   80 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCC---ccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence            45567789999999999998 66   889999874311  0            00001          458999999999


Q ss_pred             CCceEEEEEEeCC
Q psy11131        115 DRGIYQCIARRSD  127 (150)
Q Consensus       115 ~~g~y~C~~~~~~  127 (150)
                      |+|.|.|.+.+..
T Consensus        81 DsG~Y~C~~~~~~   93 (109)
T cd04983          81 DSAVYFCALSESG   93 (109)
T ss_pred             HCEEEEEEEecCC
Confidence            9999999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.55  E-value=1.8e-06  Score=46.09  Aligned_cols=66  Identities=17%  Similarity=0.376  Sum_probs=46.0

Q ss_pred             EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131         72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ  138 (150)
Q Consensus        72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~  138 (150)
                      +.|.|.+.  .|   .+.+.|++++..+.....           .+.|.|.....+|...|.|.+.|..-........|.
T Consensus         2 ~~L~C~s~gSkP---~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~   78 (82)
T cd05883           2 IELNCTAMASKP---AATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLE   78 (82)
T ss_pred             EEEEEEecCCCC---CCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence            67899998  78   999999998876643210           456777665555666799999987643345555555


Q ss_pred             Ec
Q psy11131        139 LG  140 (150)
Q Consensus       139 v~  140 (150)
                      |.
T Consensus        79 V~   80 (82)
T cd05883          79 VQ   80 (82)
T ss_pred             EE
Confidence            54

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.54  E-value=1.9e-07  Score=50.62  Aligned_cols=36  Identities=33%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +.|.|.+++.+|+|.|+|.+.|..+.....+.|.|+
T Consensus        50 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~   85 (86)
T cd05862          50 STLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH   85 (86)
T ss_pred             eEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence            689999999999999999999988877888888876

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.53  E-value=1.8e-07  Score=52.20  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..|.|.++..+|+|.|+|.+.|..|..+..+.|.|.
T Consensus        65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          65 SELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             EEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence            679999999999999999999999998888888875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.53  E-value=2e-07  Score=48.44  Aligned_cols=36  Identities=28%  Similarity=0.325  Sum_probs=30.3

Q ss_pred             CCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +..|.|.++..+|+|.|+|.+.|..|.......+++
T Consensus        33 ~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864          33 GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            368999999999999999999999887666655554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.52  E-value=5.7e-07  Score=49.39  Aligned_cols=44  Identities=23%  Similarity=0.425  Sum_probs=35.4

Q ss_pred             cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131          6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL   49 (150)
Q Consensus         6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   49 (150)
                      +..+.++.+..    +.|.|.++..+|+|.|.|.+.|..|.....+.|
T Consensus        44 l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          44 IVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             CCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence            34445666543    589999999999999999999999988877665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.52  E-value=2.6e-07  Score=49.16  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=30.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ   50 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   50 (150)
                      +.|.|.+++..|+|.|+|.|.|..|.....+.+.
T Consensus        44 ~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855          44 GCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            5799999999999999999999999877776654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.52  E-value=3.2e-07  Score=48.76  Aligned_cols=45  Identities=24%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEE
Q psy11131          6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ   50 (150)
Q Consensus         6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   50 (150)
                      +..+.++.+..    +.|.|.++..+|+|.|.|.+.|..|.......+.
T Consensus        27 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743          27 VPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            33445555432    5799999999999999999999988876654443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.52  E-value=5.7e-07  Score=49.28  Aligned_cols=42  Identities=31%  Similarity=0.509  Sum_probs=33.0

Q ss_pred             CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEE
Q psy11131         10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v   51 (150)
                      .++.+..  ++|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|
T Consensus        46 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          46 PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            3444443  689999999999999999999998874 44666665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.52  E-value=2.2e-07  Score=51.92  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ++|.|.++..+|+|.|+|.+.|..|..+..+.|.|.
T Consensus        65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          65 SKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             cEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            579999999999999999999999998888888775

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.52  E-value=8.2e-07  Score=46.92  Aligned_cols=42  Identities=29%  Similarity=0.428  Sum_probs=35.6

Q ss_pred             ceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         11 RTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        11 ~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ++....  ..|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus        31 ~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736          31 QLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             cEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            444443  569999999999999999999999998888888875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.50  E-value=4e-07  Score=51.64  Aligned_cols=39  Identities=28%  Similarity=0.442  Sum_probs=35.1

Q ss_pred             CeEEEcCCC-CCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVT-AEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      +.|.|.++. .+|.|.|+|.+.|..|.....+.|.|..+|
T Consensus        69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          69 SILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             eEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            579999997 599999999999999999999999988765

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.49  E-value=2.8e-06  Score=46.84  Aligned_cols=59  Identities=22%  Similarity=0.323  Sum_probs=45.0

Q ss_pred             cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCC--------cceeeEEEccCCCCCCceEEEEEE
Q psy11131         63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR--------TSSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~--------~~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ...+..|++++|.|....+   ...+.|++++......        ...+.+.|..+...|+|.|.|...
T Consensus         9 ~~vV~~G~~VTL~C~~~~~---~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           9 SPVVPSGENVTLQCHSDIR---FDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCccCCCCeEEEEEecCCC---CCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            3457789999999988744   5679999977543211        115678999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.49  E-value=8.6e-07  Score=49.19  Aligned_cols=70  Identities=21%  Similarity=0.244  Sum_probs=49.3

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCccc--CC-----------C----cc------eeeEEEccCCCCCCceEEE
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI--PG-----------R----TS------STSLVINPVGREDRGIYQC  121 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~--~~-----------~----~~------~~~l~~~~~~~~~~g~y~C  121 (150)
                      ..|+++.|.|...  ..   ...+.|++....+  ..           .    .+      ...|.|.++..+|+|.|.|
T Consensus         2 ~~G~sVtL~c~~~~~~~---~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c   78 (97)
T cd05775           2 ILGGSVTLPLNIPDGTE---IESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRA   78 (97)
T ss_pred             ccCCeEEEeCCCCCCcE---EEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEE
Confidence            3688899999765  22   5678887642110  00           0    00      3689999999999999999


Q ss_pred             EEEeCCCCceeeeEEEEE
Q psy11131        122 IARRSDGDVAQGSAELQL  139 (150)
Q Consensus       122 ~~~~~~g~~~~~~~~l~v  139 (150)
                      .+....|......+.|.|
T Consensus        79 ~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          79 EINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEcCCCCeEEEEEEEEe
Confidence            999887766677777765

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.48  E-value=5e-06  Score=46.24  Aligned_cols=36  Identities=19%  Similarity=0.430  Sum_probs=31.0

Q ss_pred             eeeEEEccCCCCCCceEEEEEEe-CCCCceeeeEEEEE
Q psy11131        103 STSLVINPVGREDRGIYQCIARR-SDGDVAQGSAELQL  139 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~~~~~~l~v  139 (150)
                      ..+|.|.++..+|.|.|.|.+.+ +.| ..+.++.|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g-~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTG-NRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCC-CeEEEEEEEE
Confidence            47899999999999999999999 566 5777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.48  E-value=7.6e-07  Score=46.50  Aligned_cols=40  Identities=28%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             CceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131         10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL   49 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   49 (150)
                      .++...+.+|.|.++..+|+|.|+|.+.+..........+
T Consensus        29 ~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702          29 SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            4555555789999999999999999999875554444333

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.47  E-value=2.3e-06  Score=48.56  Aligned_cols=38  Identities=26%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      ...|.|.+++.+|+|.|.|.+..... .....+.|.|.+
T Consensus        71 ~asL~I~~l~~sD~G~Y~C~v~~~~~-~~~~~v~l~V~g  108 (110)
T cd05878          71 DASLEISRLRSSDSGVYRCEVMHGIE-DEQDTVPLEVTG  108 (110)
T ss_pred             cEEEEECCCChhhCEEEEEEEEeCCC-cceEEEEEEEEE
Confidence            46799999999999999999997654 567778887764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.47  E-value=1.3e-06  Score=47.99  Aligned_cols=32  Identities=31%  Similarity=0.475  Sum_probs=26.8

Q ss_pred             eCCeEEEcCCCCCCCeEEEEEeccCCcceeEE
Q psy11131         15 LGPILAIEGVTAEDSGTYRCSSSNIGGEATAE   46 (150)
Q Consensus        15 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   46 (150)
                      .++.|.|.++..+|+|.|+|.+.+..+.....
T Consensus        50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~   81 (92)
T cd05757          50 KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN   81 (92)
T ss_pred             cCCEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence            45889999999999999999999876654443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.46  E-value=6.2e-07  Score=48.39  Aligned_cols=36  Identities=33%  Similarity=0.523  Sum_probs=29.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc--ceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~   52 (150)
                      ..|.|.+++.+|+|.|.|.+.+..+  .....+.|+|.
T Consensus        46 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          46 STLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            5799999999999999999998655  45666777765

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.46  E-value=3.3e-06  Score=47.06  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=29.1

Q ss_pred             eeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131        104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       104 ~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ..|.|.++..+|.|.|.|.+.+..+ .....+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~-~~~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGF-YEEATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCc-EEEEEEEEEE
Confidence            5799999999999999999998766 4666666665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.44  E-value=9.4e-07  Score=48.54  Aligned_cols=34  Identities=32%  Similarity=0.630  Sum_probs=27.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQ   50 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~   50 (150)
                      .+|.|.+++.+|+|.|+|.+.|..|. ..+.+.|.
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          57 STLTIYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             EEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            47999999999999999999998544 45555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.43  E-value=6.5e-07  Score=48.34  Aligned_cols=35  Identities=31%  Similarity=0.444  Sum_probs=31.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        51 ~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857          51 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             eEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            57999999999999999999999999888887764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.43  E-value=1.5e-06  Score=47.61  Aligned_cols=46  Identities=20%  Similarity=0.259  Sum_probs=36.3

Q ss_pred             CCCceEEeCCeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEEec
Q psy11131          8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVST   53 (150)
Q Consensus         8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~~   53 (150)
                      .+.++....++|.|.++..+|+|.|+|.+.+ ..+.....+.|+|..
T Consensus        44 ~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~   90 (91)
T cd05871          44 TEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE   90 (91)
T ss_pred             ccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence            3467777778899999999999999999974 556566677777753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.42  E-value=1.5e-06  Score=47.94  Aligned_cols=37  Identities=22%  Similarity=0.341  Sum_probs=32.3

Q ss_pred             CCeEEEcCCCCCCCeEEEEEec-cCCcceeEEEEEEEe
Q psy11131         16 GPILAIEGVTAEDSGTYRCSSS-NIGGEATAEVRLQVS   52 (150)
Q Consensus        16 ~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v~   52 (150)
                      +.+|.|.|++.+|.|.|.|.+. .+.|...+.+.|+|.
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~~   96 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTVL   96 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEEC
Confidence            3899999999999999999976 568888999888873

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.41  E-value=4.1e-06  Score=47.63  Aligned_cols=38  Identities=24%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      ...|.|.+++.+|+|.|.|.+..... ..+..+.|.|.+
T Consensus        73 ~asL~I~nl~~sDsG~Y~C~V~~g~~-~~~~~v~l~v~g  110 (112)
T cd05900          73 DATLEITELRSNDSGTYRCEVMHGIE-DNYDTVEVQVKG  110 (112)
T ss_pred             CcEEEEeecccccCEEEEEEEecCCC-CceeEEEEEEEe
Confidence            56899999999999999999997665 567777777654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.38  E-value=4.9e-06  Score=47.15  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=31.5

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      ..+|.|.+++.+|.|.|.|.+..... .....+.|.|.+
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~-~~~~~v~L~V~g  108 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGIN-DEQDTVPLEVTG  108 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCc-ccEEEEEEEEEE
Confidence            46899999999999999999998664 567778887753

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.38  E-value=6.4e-07  Score=47.91  Aligned_cols=35  Identities=37%  Similarity=0.621  Sum_probs=30.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        48 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856          48 WTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             EEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            57999999999999999999999888777776653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.38  E-value=8.7e-07  Score=48.43  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=31.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus        56 ~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          56 YNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             EEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence            57999999999999999999999999888887764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.37  E-value=1.1e-05  Score=46.14  Aligned_cols=68  Identities=15%  Similarity=0.325  Sum_probs=45.9

Q ss_pred             CCcEEEecCCcEEEEEEec-CC-CCCCcEEEEeec---Ccc---c----C-----CC----cc----------eeeEEEc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PY-DSGPYLIAWFKD---GRQ---I----P-----GR----TS----------STSLVIN  109 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~---~~~---~----~-----~~----~~----------~~~l~~~  109 (150)
                      +..+.+.+|+.+.|.|... .+ ......+.|++.   +..   +    .     ..    .+          ...|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4556788999999999976 32 111246999642   111   0    0     00    00          3569999


Q ss_pred             cCCCCCCceEEEEEEeCCC
Q psy11131        110 PVGREDRGIYQCIARRSDG  128 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~~~g  128 (150)
                      +++.+|+|.|.|.+.+...
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999998654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.37  E-value=1.9e-06  Score=46.57  Aligned_cols=42  Identities=36%  Similarity=0.625  Sum_probs=32.0

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEE
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQ   50 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~   50 (150)
                      +.++.... +.|.|.++..+|+|.|+|.+.|..|.. +..+.|.
T Consensus        42 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724          42 NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence            34454443 789999999999999999999988774 4445544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.37  E-value=1.3e-05  Score=46.01  Aligned_cols=68  Identities=18%  Similarity=0.330  Sum_probs=45.9

Q ss_pred             CCcEEEecCCcEEEEEEec-CC-CCCCcEEEEeecCc------c---------cC-CCcc--------------eeeEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PY-DSGPYLIAWFKDGR------Q---------IP-GRTS--------------STSLVI  108 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~~~------~---------~~-~~~~--------------~~~l~~  108 (150)
                      |..+.+.+|+.+.|.|... .. ......+.|++...      .         .. ....              ...|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4556788999999999886 32 10135689965211      0         00 0000              257999


Q ss_pred             ccCCCCCCceEEEEEEeCCC
Q psy11131        109 NPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+++.+|.|.|.|.+.+.-.
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999997644

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.37  E-value=1.7e-05  Score=43.84  Aligned_cols=36  Identities=28%  Similarity=0.481  Sum_probs=29.5

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeC-CCCceeeeEEEEE
Q psy11131        103 STSLVINPVGREDRGIYQCIARRS-DGDVAQGSAELQL  139 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~-~g~~~~~~~~l~v  139 (150)
                      ..+|.|.++..+|.|.|.|.+.+. .| ..+.+..|.|
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G-~~~~~~~l~~   95 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLG-NTQSSTTVTV   95 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCC-CeeEEEEEEE
Confidence            568999999999999999998754 56 5677777765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.36  E-value=1e-05  Score=46.21  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=32.4

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      ..+|.|.+++..|.|.|.|.+..... ....++.|.|.+
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~-~~~~~v~L~V~G  115 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIE-DTQDTVSLDVSG  115 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCc-ccEEEEEEEEEE
Confidence            47899999999999999999998876 577788887754

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.36  E-value=1.7e-06  Score=48.06  Aligned_cols=42  Identities=21%  Similarity=0.194  Sum_probs=34.5

Q ss_pred             CceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .|+...+..|.|.++..+|+|.|+|.+.|........+.|+|
T Consensus        63 ~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          63 VRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             eeEEEeCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence            478888899999999999999999999998655555555543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.36  E-value=7.5e-07  Score=48.94  Aligned_cols=34  Identities=44%  Similarity=0.615  Sum_probs=30.9

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        59 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          59 SLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            7999999999999999999999999888877764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.36  E-value=1.7e-05  Score=42.59  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=44.9

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCc--EEEEeecCcccCC-C-cceeeEEEccCCCCCCceEEEEEEeC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPY--LIAWFKDGRQIPG-R-TSSTSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~--~~~w~~~~~~~~~-~-~~~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      ..+..|+.+.|.|... .+   .|  .+.|...+..... . .....|.+..+...|+|.++|.+...
T Consensus         9 ~~lL~G~sLtLtl~~~s~s---~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNS---LPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CeeecCCcEEEEEecCCCC---CCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            3578899999999996 44   44  9999865443221 1 11578999999999999999999743

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA02633 hypothetical protein; Provisional

Probab=98.35  E-value=3.9e-06  Score=41.62  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      ..|.|-++..+|+|.|.|...|........+.|+|...
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            68999999999999999999987666677777777643

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.34  E-value=1e-06  Score=46.58  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=27.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEV   47 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   47 (150)
                      ..|.|.++..+|+|.|.|.+.|..|..+..+
T Consensus        44 ~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895          44 SELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             EEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            6799999999999999999999888766554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.34  E-value=2.7e-06  Score=47.43  Aligned_cols=35  Identities=29%  Similarity=0.492  Sum_probs=29.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v   51 (150)
                      .+|.|.|++.+|+|.|.|.+.+ +.|...+.+.|.|
T Consensus        64 ~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          64 GALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             eEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            6899999999999999999886 5676677777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.34  E-value=2.4e-06  Score=47.98  Aligned_cols=42  Identities=29%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEE
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQ   50 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~   50 (150)
                      +.|..+.. ++|.|.+++.+|+|.|.|.+.+.. ........|.
T Consensus        61 ~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          61 SGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            45666665 899999999999999999998865 3344444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.33  E-value=1.7e-05  Score=43.88  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=28.9

Q ss_pred             eeeEEEccCCCCCCceEEEEEEe-CCCCceeeeEEEEE
Q psy11131        103 STSLVINPVGREDRGIYQCIARR-SDGDVAQGSAELQL  139 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~~~~~~l~v  139 (150)
                      ...|.|.++...|+|.|.|.+.. +.| .....+.|.|
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g-~~~~~~~l~V   97 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFATFPQG-NRQKVTTLTV   97 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCC-cEEEEEEEEe
Confidence            35899999999999999999875 455 5666676665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.32  E-value=4e-06  Score=46.24  Aligned_cols=42  Identities=31%  Similarity=0.532  Sum_probs=32.2

Q ss_pred             CCCceEEeCCeEEEcCCC-CCCCeEEEEEeccCCcceeE-EEEE
Q psy11131          8 PGPRTRVLGPILAIEGVT-AEDSGTYRCSSSNIGGEATA-EVRL   49 (150)
Q Consensus         8 ~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~-~~~l   49 (150)
                      .+.++.+..++|.|.++. ..|+|.|+|.+.|..|.... .+.|
T Consensus        49 ~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          49 PESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            345677767899998865 69999999999999887543 4444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.32  E-value=1e-05  Score=44.85  Aligned_cols=36  Identities=42%  Similarity=0.589  Sum_probs=29.0

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeC-CCCceeeeEEEEE
Q psy11131        103 STSLVINPVGREDRGIYQCIARRS-DGDVAQGSAELQL  139 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~-~g~~~~~~~~l~v  139 (150)
                      ...|.|.++..+|+|.|.|.+... .| ..+..+.|.|
T Consensus        60 ~~sL~I~nv~~~D~G~Y~C~~~~~p~g-~~~~~~~L~v   96 (97)
T cd05846          60 STSITIWNVTLEDEGCYKCIFNTFPDG-SKSGTMCLTV   96 (97)
T ss_pred             ccEEEEeCCceeeeEEEEEEEEeCCCC-CeeeEEEEEE
Confidence            467999999999999999998754 55 5667777765

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.32  E-value=1.1e-05  Score=44.85  Aligned_cols=67  Identities=15%  Similarity=0.311  Sum_probs=46.0

Q ss_pred             EeCCCcEEEecCCcEEEEEEec--CCCCCCcE--EEEeecCcccCCCcc----------eeeEEEccCCCCCCc-eEEEE
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT--PYDSGPYL--IAWFKDGRQIPGRTS----------STSLVINPVGREDRG-IYQCI  122 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~--~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g-~y~C~  122 (150)
                      .+.+....+.+|+.++|.|.+.  .|   ...  +.|++++..+.....          ...+.+. +..+|.| .|.|.
T Consensus         5 ~l~~~p~~~~eG~~~tL~C~v~g~~P---~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~   80 (100)
T cd05755           5 ELSPLPSWQPVGKNYTLQCDVPGVAP---RQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCE   80 (100)
T ss_pred             EEecCCCcccCCCcEEEEEEEcCcCC---CCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEE
Confidence            3444444568999999999998  66   554  799998876643221          3455554 4455666 79999


Q ss_pred             EEeCCC
Q psy11131        123 ARRSDG  128 (150)
Q Consensus       123 ~~~~~g  128 (150)
                      +.+..+
T Consensus        81 A~l~l~   86 (100)
T cd05755          81 TELDLR   86 (100)
T ss_pred             EEeccC
Confidence            997665

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.31  E-value=9.5e-06  Score=46.04  Aligned_cols=65  Identities=22%  Similarity=0.431  Sum_probs=47.3

Q ss_pred             eCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCc--ccC--------------C--Cc---------ceeeEEEccC
Q psy11131         59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR--QIP--------------G--RT---------SSTSLVINPV  111 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~--~~~--------------~--~~---------~~~~l~~~~~  111 (150)
                      ..|....+.+|+.+.|.|....+   ...+.|++...  ...              .  ..         ....|.|.++
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~~---~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~   79 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTSG---HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA   79 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECCC---CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence            34666788999999999988644   57899987432  100              0  00         0357999999


Q ss_pred             CCCCCceEEEEEEeC
Q psy11131        112 GREDRGIYQCIARRS  126 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~  126 (150)
                      ..+|+|.|.|.+.+.
T Consensus        80 ~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          80 EPEDSAVYLCASSLG   94 (110)
T ss_pred             ChhhCEEEEEEeeCC
Confidence            999999999998854

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.30  E-value=3.8e-06  Score=43.52  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131          9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL   49 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   49 (150)
                      ..++......|.|.++  .|+|.|+|.+.|..|...+.+.|
T Consensus        30 ~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739          30 EDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             ccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            3344333367999987  58999999999999988777665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.29  E-value=1.5e-06  Score=45.71  Aligned_cols=32  Identities=34%  Similarity=0.506  Sum_probs=27.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVR   48 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   48 (150)
                      ..|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus        43 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750          43 SELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             EEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            67999999999999999999999887665543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.28  E-value=2.6e-05  Score=43.48  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=29.7

Q ss_pred             eeeEEEccCCCCCCceEEEEEEe-CCCCceeeeEEEEE
Q psy11131        103 STSLVINPVGREDRGIYQCIARR-SDGDVAQGSAELQL  139 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~~~~~~l~v  139 (150)
                      ...|.|.++..+|+|.|.|.+.+ +.| ..+..+.|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g-~~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAG-NFEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCC-CeeeEEEEEe
Confidence            46899999999999999999997 556 4577777766

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.26  E-value=4.2e-06  Score=45.80  Aligned_cols=41  Identities=32%  Similarity=0.391  Sum_probs=30.6

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEE
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQ   50 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~   50 (150)
                      .|+.+.. ++|.|.+++.+|+|.|+|.+....+. ....+.|.
T Consensus        49 ~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~   91 (92)
T cd05741          49 GRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR   91 (92)
T ss_pred             CeEEEcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence            5566544 89999999999999999998876533 44445444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.26  E-value=2.6e-06  Score=47.43  Aligned_cols=35  Identities=37%  Similarity=0.439  Sum_probs=29.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+.....+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            57999999999999999999987666666677665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.25  E-value=2.7e-06  Score=47.94  Aligned_cols=37  Identities=32%  Similarity=0.466  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .+|+|.+++.+|+|.|.|.+.+..+.......|.|.+
T Consensus        68 ~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          68 ASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             ceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence            7899999999999999999998766677788887764

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.25  E-value=8.2e-06  Score=45.75  Aligned_cols=60  Identities=25%  Similarity=0.478  Sum_probs=44.3

Q ss_pred             EEecCCcEEEEEEec-C-CCCCCcEEEEeecCcc-----c------------CCCcc----------eeeEEEccCCCCC
Q psy11131         65 SVHLDGSANFQCEIT-P-YDSGPYLIAWFKDGRQ-----I------------PGRTS----------STSLVINPVGRED  115 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~~~-----~------------~~~~~----------~~~l~~~~~~~~~  115 (150)
                      .+.+|+.+.|.|... . +   ...+.|++....     +            ....+          ...|.|.++..+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   78 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFS---SYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPED   78 (105)
T ss_pred             eecCCCCEEEEEEEeCCcC---cceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHH
Confidence            356899999999998 5 5   788999874320     0            00001          3488999999999


Q ss_pred             CceEEEEEEeCC
Q psy11131        116 RGIYQCIARRSD  127 (150)
Q Consensus       116 ~g~y~C~~~~~~  127 (150)
                      .|.|.|.+.+..
T Consensus        79 ~G~Y~C~v~~~~   90 (105)
T cd00099          79 SAVYYCAVSLSG   90 (105)
T ss_pred             CEEEEEEEecCC
Confidence            999999998654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.25  E-value=4.8e-06  Score=45.36  Aligned_cols=44  Identities=30%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             CceEEeCCeEEEcCCCCCCCeEEEEEeccC-CcceeEEEEEEEec
Q psy11131         10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNI-GGEATAEVRLQVST   53 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~l~v~~   53 (150)
                      .++......|.|.+++.+|+|.|.|.+.+. .+...+...|.|.+
T Consensus        44 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~   88 (89)
T cd04979          44 ERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE   88 (89)
T ss_pred             ceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence            455555578999999999999999999865 34566667777653

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.24  E-value=9.2e-06  Score=46.01  Aligned_cols=75  Identities=20%  Similarity=0.376  Sum_probs=51.0

Q ss_pred             CCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCc-----ccC---CCcc---------------------eeeEEEc
Q psy11131         61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGR-----QIP---GRTS---------------------STSLVIN  109 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~-----~~~---~~~~---------------------~~~l~~~  109 (150)
                      +..+.+.+|+.+.|.|...  ..   ...+.|++...     .+.   ....                     ...|.|.
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~   84 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSN---QSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIK   84 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSS---GSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCC---cceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEEC
Confidence            4556788999999999987  23   67999987432     110   0000                     3469999


Q ss_pred             cCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131        110 PVGREDRGIYQCIARRSDGDVAQGSAELQ  138 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~~~g~~~~~~~~l~  138 (150)
                      ++..+|+|.|.|.+.............|.
T Consensus        85 ~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~  113 (114)
T PF07686_consen   85 NLQPSDSGTYFCQVSTSNEQSFGNGTKLT  113 (114)
T ss_dssp             SESGGGEEEEEEEEEESSEEEEEEEEEEE
T ss_pred             CCCcCcCEEEEEEEEECCCCEECCcEEEE
Confidence            99999999999999976322333334443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.24  E-value=4.4e-06  Score=47.08  Aligned_cols=44  Identities=25%  Similarity=0.330  Sum_probs=35.7

Q ss_pred             CceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         10 PRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        10 ~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .|+.+..     .+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.+
T Consensus        56 ~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          56 GRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             CcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            5666532     5899999999999999999988777778888887763

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.24  E-value=6e-06  Score=44.75  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=26.7

Q ss_pred             CceEEeCCeEEEcCCCCCCCeEEEEEeccC
Q psy11131         10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .++.+..+.|.|.|++.+|+|.|+|.+...
T Consensus        41 ~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873          41 AKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             ceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            577777789999999999999999998864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.23  E-value=4.2e-06  Score=46.41  Aligned_cols=42  Identities=29%  Similarity=0.419  Sum_probs=32.2

Q ss_pred             CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEE
Q psy11131         10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v   51 (150)
                      .|+.+..  .+|.|.+++.+|+|.|.|.+....+. ....+.|.|
T Consensus        52 ~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          52 ERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             eeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            3555544  78999999999999999998876554 456666665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.22  E-value=1e-05  Score=44.55  Aligned_cols=41  Identities=34%  Similarity=0.517  Sum_probs=32.0

Q ss_pred             CCceEEeCCeEEEcCCC-CCCCeEEEEEeccCCcceeE-EEEE
Q psy11131          9 GPRTRVLGPILAIEGVT-AEDSGTYRCSSSNIGGEATA-EVRL   49 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~-~~~l   49 (150)
                      ..++.+.++.|.|.++. .+|+|.|+|.+.|..|.... .++|
T Consensus        49 ~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          49 NDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            45666667899999985 69999999999999887643 4443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.21  E-value=2.7e-05  Score=43.87  Aligned_cols=66  Identities=24%  Similarity=0.456  Sum_probs=46.2

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc----------CC--Ccc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI----------PG--RTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~----------~~--~~~--------~~~l~~~~~~~~  114 (150)
                      ...|....+.+|+.+.|.|... ...  ...+.|++..  ...          ..  ..+        ...|.|.++..+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~--~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~   81 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVS--SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE   81 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCC--CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence            3456677889999999999986 321  4678898642  110          00  001        346899999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |+|.|.|.+.+
T Consensus        82 Dsg~Y~Ca~~~   92 (106)
T cd04980          82 DAAVYYCQQYG   92 (106)
T ss_pred             HCEEEEEEEeC
Confidence            99999999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.21  E-value=6.6e-06  Score=45.35  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=28.6

Q ss_pred             CceEEeCCeEEEcCCC-CCCCeEEEEEeccCCccee
Q psy11131         10 PRTRVLGPILAIEGVT-AEDSGTYRCSSSNIGGEAT   44 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~   44 (150)
                      .++.+..++|.|.++. .+|+|.|+|.+.|..|...
T Consensus        51 ~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          51 YRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             ceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            3555566899999985 6999999999999988764

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.19  E-value=6.4e-06  Score=46.77  Aligned_cols=37  Identities=30%  Similarity=0.448  Sum_probs=31.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .+|+|.+++.+|+|.|.|.+..........+.|.|.+
T Consensus        72 asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          72 ASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             EEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            6799999999999999999987656667777777764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.19  E-value=8e-06  Score=46.45  Aligned_cols=37  Identities=32%  Similarity=0.455  Sum_probs=30.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .+|+|.+++.+|+|.|+|.+..+....+....|.|..
T Consensus        74 asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          74 ATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            7899999999999999999987655666666776653

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.18  E-value=2.9e-05  Score=47.51  Aligned_cols=77  Identities=22%  Similarity=0.415  Sum_probs=54.8

Q ss_pred             cEEEecCCcEEEEEEec--CCCCCCcEEEEeecCccc----------CCC--cc---------eeeEEEccCCCCCCceE
Q psy11131         63 LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI----------PGR--TS---------STSLVINPVGREDRGIY  119 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~----------~~~--~~---------~~~l~~~~~~~~~~g~y  119 (150)
                      ...+.+|+.+.|.|...  ..   .+++.|.+....+          ..+  .+         ...+.|.++..+|+|.|
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~---~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY  100 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFN---SILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCY  100 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCc---cceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEE
Confidence            34678899999999985  34   7889998753221          000  01         46799999999999999


Q ss_pred             EEEEEeC-CCCceeeeEEEEEcCc
Q psy11131        120 QCIARRS-DGDVAQGSAELQLGGT  142 (150)
Q Consensus       120 ~C~~~~~-~g~~~~~~~~l~v~~~  142 (150)
                      .|..... .|...+.+..|.|...
T Consensus       101 ~C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        101 TCIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEEEEecCCCCCceeEEEEEEEch
Confidence            9998754 3435677777777654

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.18  E-value=6.5e-06  Score=45.47  Aligned_cols=31  Identities=29%  Similarity=0.513  Sum_probs=24.7

Q ss_pred             CCCceEEeC-----CeEEEcCCCCCCCeEEEEEecc
Q psy11131          8 PGPRTRVLG-----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus         8 ~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+.|+.+..     .+|.|.++..+|+|.|+|.+..
T Consensus        48 ~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882          48 RDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             eCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            345665432     5899999999999999999876

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.17  E-value=3.8e-06  Score=45.35  Aligned_cols=34  Identities=38%  Similarity=0.575  Sum_probs=30.1

Q ss_pred             CCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131         16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL   49 (150)
Q Consensus        16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   49 (150)
                      ++.|.|.+++.+|+|.|.|.+.|..|...+.+.|
T Consensus        51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          51 NGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             CCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            4789999999999999999999998887777655

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.16  E-value=1e-05  Score=46.16  Aligned_cols=37  Identities=32%  Similarity=0.446  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .+|.|.+++.+|+|.|.|.+............|.|.+
T Consensus        79 asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          79 ASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             eEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            7899999999999999999988776677777777764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.16  E-value=6.9e-06  Score=45.38  Aligned_cols=43  Identities=26%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             CCCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          8 PGPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         8 ~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .++|+....     .+|.|.++..+|+|.|.|.+....+ .+..+.|+|
T Consensus        48 ~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~-~~~~~~l~v   95 (95)
T cd07701          48 RDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPV-KTSKAYLTV   95 (95)
T ss_pred             cCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecC-ccEEEEEEC
Confidence            456765521     5799999999999999999887432 355556554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.14  E-value=3.9e-05  Score=41.13  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=37.1

Q ss_pred             EEEEEEec--CCCCCCcEEEEeecCcccCCCcc------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +.|.|.+.  .|   .+.+.|++++..+.....            .+.|.+.....++...|.|.+.+...
T Consensus         2 ~~L~C~~~~~~P---~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKP---AATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCc---CCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence            57899998  68   889999998876642211            23344444444455689999998765

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.12  E-value=3.1e-05  Score=42.95  Aligned_cols=58  Identities=19%  Similarity=0.291  Sum_probs=41.5

Q ss_pred             EEecCCcEEEEEEec-C--CCCCCcEEEEeecCc--ccC------------CCcc--------eeeEEEccCCCCCCceE
Q psy11131         65 SVHLDGSANFQCEIT-P--YDSGPYLIAWFKDGR--QIP------------GRTS--------STSLVINPVGREDRGIY  119 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~--p~~~~~~~~w~~~~~--~~~------------~~~~--------~~~l~~~~~~~~~~g~y  119 (150)
                      .+.+|+++.|.|... .  .   ...+.|++...  ...            ...+        ...|.|.++..+|+|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~---~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y   78 (98)
T cd04984           2 SVSPGETVTITCTGSSGNIS---GNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADY   78 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcC---CCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEE
Confidence            356899999999886 4  4   56788976422  110            0001        35799999999999999


Q ss_pred             EEEEEe
Q psy11131        120 QCIARR  125 (150)
Q Consensus       120 ~C~~~~  125 (150)
                      .|.+.+
T Consensus        79 ~C~~~~   84 (98)
T cd04984          79 YCQVWD   84 (98)
T ss_pred             EEEEcc
Confidence            999875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.11  E-value=9.8e-06  Score=44.91  Aligned_cols=36  Identities=25%  Similarity=0.429  Sum_probs=30.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~   52 (150)
                      .+|+|.+++.+|+|.|.|.+.. ..|...+.+.|.|.
T Consensus        62 ~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          62 ATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             eEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence            6899999999999999999864 56777777777763

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.09  E-value=9.3e-06  Score=46.03  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .+|.|.+++.+|+|.|.|.+............|.|.+
T Consensus        72 asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          72 ASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             EEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            6899999999999999999988655567777777753

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.08  E-value=1.3e-05  Score=44.37  Aligned_cols=36  Identities=31%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEec-cCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS-NIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v~   52 (150)
                      .+|.|.+++.+|+|.|.|.+. .+.|..+..+.|+|.
T Consensus        61 ~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~   97 (97)
T cd05846          61 TSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY   97 (97)
T ss_pred             cEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence            789999999999999999977 457778888888773

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.08  E-value=1.5e-05  Score=43.57  Aligned_cols=36  Identities=36%  Similarity=0.601  Sum_probs=29.3

Q ss_pred             CCceEEeCCeEEEcCCC-CCCCeEEEEEeccCCccee
Q psy11131          9 GPRTRVLGPILAIEGVT-AEDSGTYRCSSSNIGGEAT   44 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~   44 (150)
                      +.++....+.|.|.++. .+|+|.|+|.+.|..|...
T Consensus        50 ~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          50 DSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            45666666889999887 4999999999999888654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.06  E-value=1.6e-05  Score=44.17  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=28.2

Q ss_pred             CeEEEcCCCCCC-CeEEEEEeccCCcceeEEEEE
Q psy11131         17 PILAIEGVTAED-SGTYRCSSSNIGGEATAEVRL   49 (150)
Q Consensus        17 ~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~l   49 (150)
                      +.|.|.++..+| .|.|.|.+.|..|.....+.|
T Consensus        64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          64 STLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence            379999999955 999999999999987777665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.06  E-value=1.6e-05  Score=43.85  Aligned_cols=42  Identities=26%  Similarity=0.436  Sum_probs=30.3

Q ss_pred             CCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          9 GPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         9 ~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.|+....     .+|.|.+++.+|+|.|.|.+..... .++.+.|+|
T Consensus        49 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v   95 (95)
T cd05717          49 DNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV   95 (95)
T ss_pred             cCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence            35666531     5799999999999999999886532 355555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.06  E-value=3.3e-05  Score=42.51  Aligned_cols=60  Identities=22%  Similarity=0.500  Sum_probs=42.2

Q ss_pred             ecCCcEEEEEEec-C-CCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         67 HLDGSANFQCEIT-P-YDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        67 ~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..|..+.|.|.+. . |.  ...+.|++++..+.....              .+.|.+......+.+.|.|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~--~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPP--DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECC--CcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            3578999999999 4 51  468999998876543321              23455555555688999999997654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.04  E-value=2.2e-05  Score=44.98  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=26.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQ   50 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~   50 (150)
                      .+|.|.|++.+|.|.|+|.+.|....  ....+.|.
T Consensus        80 aSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          80 GSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             eEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            78999999999999999999986432  23444443

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.03  E-value=2.4e-05  Score=41.37  Aligned_cols=36  Identities=31%  Similarity=0.515  Sum_probs=27.6

Q ss_pred             CCceEEeC--CeEEEcCCCC----CCCeEEEEEeccCCccee
Q psy11131          9 GPRTRVLG--PILAIEGVTA----EDSGTYRCSSSNIGGEAT   44 (150)
Q Consensus         9 ~~~~~~~~--~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~   44 (150)
                      +.++....  +.|.|.++..    +|+|.|+|.+.|..|...
T Consensus        29 ~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733          29 DPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            34555443  8899998864    789999999999988744

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.01  E-value=5.1e-05  Score=43.46  Aligned_cols=64  Identities=25%  Similarity=0.462  Sum_probs=46.0

Q ss_pred             eCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEEeecC--cc---c---------CCCcc----------eeeEEEccCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAWFKDG--RQ---I---------PGRTS----------STSLVINPVG  112 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~--~~---~---------~~~~~----------~~~l~~~~~~  112 (150)
                      ..+..+.+.+|+++.|.|... . .   ...+.|++..  ..   +         ....+          ...|.|.++.
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~---~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~   80 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWT---NYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQ   80 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCC---ceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCC
Confidence            345667789999999999976 3 4   6778998732  11   0         00011          3578999999


Q ss_pred             CCCCceEEEEEEe
Q psy11131        113 REDRGIYQCIARR  125 (150)
Q Consensus       113 ~~~~g~y~C~~~~  125 (150)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsg~Y~C~~~~   93 (116)
T cd07706          81 LEDSAKYFCALST   93 (116)
T ss_pred             HHHCEEEEEEEEC
Confidence            9999999999984

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.99  E-value=8.6e-05  Score=41.15  Aligned_cols=60  Identities=23%  Similarity=0.365  Sum_probs=42.6

Q ss_pred             EEEecCCcEEEEEEec--CCCCCCcEEEEeecCccc-------------CCCcc----------eeeEEEccCCCCCCce
Q psy11131         64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI-------------PGRTS----------STSLVINPVGREDRGI  118 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~-------------~~~~~----------~~~l~~~~~~~~~~g~  118 (150)
                      +.+.+|+++.|.|...  ..   ...+.|++.....             ....+          ...|.|.++..+|+|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~---~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~   78 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNR---SYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGW   78 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCC---CcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEE
Confidence            3567899999999876  24   6678898753210             00001          3579999999999999


Q ss_pred             EEEEEEeC
Q psy11131        119 YQCIARRS  126 (150)
Q Consensus       119 y~C~~~~~  126 (150)
                      |.|.+...
T Consensus        79 Y~C~~~~~   86 (98)
T cd05716          79 YWCGVGDD   86 (98)
T ss_pred             EEEEcccC
Confidence            99998753

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.98  E-value=1.7e-05  Score=43.65  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=23.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE   42 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~   42 (150)
                      ..|.|.++..+|+|.|+|.+.+..+.
T Consensus        55 ~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897          55 TYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             CEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            68999999999999999999987544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.98  E-value=4.2e-05  Score=42.26  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=26.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc-CCcceeEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN-IGGEATAEVR   48 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~   48 (150)
                      .+|.|.|++.+|+|.|.|.+.. +.|...+.+.
T Consensus        60 ~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~   92 (96)
T cd05889          60 MSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE   92 (96)
T ss_pred             cEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence            7899999999999999999865 5666655544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.98  E-value=2.9e-05  Score=42.78  Aligned_cols=35  Identities=34%  Similarity=0.493  Sum_probs=27.3

Q ss_pred             CeEEEcCC-----CCCCCeEEEEEeccC-Ccce-eEEEEEEE
Q psy11131         17 PILAIEGV-----TAEDSGTYRCSSSNI-GGEA-TAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~-----~~~d~G~Y~C~~~~~-~~~~-~~~~~l~v   51 (150)
                      ++|.|.++     ...|.|.|+|.+.|. .|.. +..+.|+|
T Consensus        54 ~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          54 GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence            66777776     689999999999999 8875 55666654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.98  E-value=0.0002  Score=38.46  Aligned_cols=54  Identities=19%  Similarity=0.338  Sum_probs=37.4

Q ss_pred             EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +.|.|.+.  .|   .+.+.|++++..+.....             .+.+.+......+...|.|.+.+...
T Consensus         2 ~~LtC~a~g~~P---~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKP---AANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccC---CCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            57899998  68   889999999876543211             13344434445566789999998754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.97  E-value=1.7e-05  Score=42.54  Aligned_cols=35  Identities=31%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..|.|.++..+|+|.|.|.+.+..|.....+.|.|
T Consensus        51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v   85 (85)
T cd05729          51 WTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV   85 (85)
T ss_pred             EEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence            46899999999999999999998888777766653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.97  E-value=5.3e-05  Score=40.09  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=29.0

Q ss_pred             CCCCceEEe--CCeEEEcCCCC----CCCeEEEEEeccCCcceeEE
Q psy11131          7 LPGPRTRVL--GPILAIEGVTA----EDSGTYRCSSSNIGGEATAE   46 (150)
Q Consensus         7 ~~~~~~~~~--~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~~   46 (150)
                      ..+.++.+.  .++|.|.++..    .|+|.|+|.+.|..|.....
T Consensus        27 ~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875          27 AKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             cCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            345666654  38899987642    46999999999998875443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.97  E-value=0.00022  Score=39.42  Aligned_cols=26  Identities=35%  Similarity=0.532  Sum_probs=22.6

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeC-CC
Q psy11131        103 STSLVINPVGREDRGIYQCIARRS-DG  128 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~-~g  128 (150)
                      ...|.|.++..+|.|.|.|.+... .|
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g   85 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQG   85 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCC
Confidence            478999999999999999999864 45

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.96  E-value=0.00013  Score=39.19  Aligned_cols=54  Identities=19%  Similarity=0.294  Sum_probs=37.7

Q ss_pred             EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +.|.|.+.  .|   ...+.|++++..+.....             .+.|.+......+...|.|.+.+...
T Consensus         2 ~~LtC~a~gf~P---~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKP---AADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccC---CCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            57899998  78   899999999887543211             23455544444556679999997654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.96  E-value=1e-05  Score=44.58  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=22.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG   40 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~   40 (150)
                      +.|.|.+++++|+|.|+|.+.|..
T Consensus        60 G~L~fs~v~~~D~g~Y~C~A~n~~   83 (96)
T cd05727          60 GNLYIAKVEASDRGNYSCFVSSPS   83 (96)
T ss_pred             CcEEEeecCHhhCceeEEEEEecc
Confidence            999999999999999999999864

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=97.94  E-value=6.2e-05  Score=39.83  Aligned_cols=37  Identities=27%  Similarity=0.492  Sum_probs=27.1

Q ss_pred             CCceEEe--CCeEEEcCCCCC----CCeEEEEEeccCCcceeE
Q psy11131          9 GPRTRVL--GPILAIEGVTAE----DSGTYRCSSSNIGGEATA   45 (150)
Q Consensus         9 ~~~~~~~--~~~l~i~~~~~~----d~G~Y~C~~~~~~~~~~~   45 (150)
                      +.++.+.  .++|.|..+..+    |.|.|+|.+.|..|....
T Consensus        29 ~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874          29 DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            3445443  378888877653    789999999999887544

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.94  E-value=5.2e-05  Score=40.87  Aligned_cols=47  Identities=32%  Similarity=0.212  Sum_probs=33.1

Q ss_pred             ecCCCCceEEeCCeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEE
Q psy11131          5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQV   51 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v   51 (150)
                      ++.++.|+......|.|.++..+|+|.|.|.+.- +.........|.|
T Consensus        35 ~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v   82 (85)
T cd05872          35 PLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV   82 (85)
T ss_pred             ccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence            3455677887777788999999999999998763 3333344444444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.92  E-value=1.1e-05  Score=43.46  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=26.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQ   50 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~   50 (150)
                      ..|.|.+++.+|+|.|+|.+.+..+. .+....|+
T Consensus        48 ~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~   82 (83)
T cd05753          48 SNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT   82 (83)
T ss_pred             ceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence            67999999999999999999987653 23334443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>smart00410 IG_like Immunoglobulin like

Probab=97.92  E-value=9.2e-05  Score=39.21  Aligned_cols=43  Identities=42%  Similarity=0.623  Sum_probs=32.6

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.++....    ..|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus        39 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410       39 SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            34444444    47999999999999999999987766666666655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=97.92  E-value=9.2e-05  Score=39.21  Aligned_cols=43  Identities=42%  Similarity=0.623  Sum_probs=32.6

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +.++....    ..|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus        39 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409       39 SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            34444444    47999999999999999999987766666666655

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.88  E-value=0.00027  Score=40.68  Aligned_cols=67  Identities=24%  Similarity=0.266  Sum_probs=45.0

Q ss_pred             CCCcEEEecCCcEEEEEEec-CC---CCCCcEEEEeecCcc-----c----C--------CCcc----------eeeEEE
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PY---DSGPYLIAWFKDGRQ-----I----P--------GRTS----------STSLVI  108 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p---~~~~~~~~w~~~~~~-----~----~--------~~~~----------~~~l~~  108 (150)
                      .|..+.+.+|+.+.|.|... ..   ......+.|++....     +    .        ...+          ...|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            35667889999999999865 21   000356889864211     0    0        0000          357999


Q ss_pred             ccCCCCCCceEEEEEEeC
Q psy11131        109 NPVGREDRGIYQCIARRS  126 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~~  126 (150)
                      .++..+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998753

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.87  E-value=0.00016  Score=41.37  Aligned_cols=63  Identities=16%  Similarity=0.405  Sum_probs=45.1

Q ss_pred             CCCcEEEecCCcEEEEEEec---CCCCCCcEEEEeecC--ccc----------C-------CCcc----------eeeEE
Q psy11131         60 NPPLLSVHLDGSANFQCEIT---PYDSGPYLIAWFKDG--RQI----------P-------GRTS----------STSLV  107 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~---~p~~~~~~~~w~~~~--~~~----------~-------~~~~----------~~~l~  107 (150)
                      .|....+.+|+.+.|.|...   .+   .+.+.|++..  ...          .       ...+          ...|.
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~---~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   80 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFS---TTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLT   80 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCcc---ccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEE
Confidence            35566788999999999976   24   6789998742  110          0       0011          34789


Q ss_pred             EccCCCCCCceEEEEEEe
Q psy11131        108 INPVGREDRGIYQCIARR  125 (150)
Q Consensus       108 ~~~~~~~~~g~y~C~~~~  125 (150)
                      |.++..+|+|.|.|.+..
T Consensus        81 I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          81 IQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEECCHHHCEEEEEEEec
Confidence            999999999999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.86  E-value=6.2e-05  Score=41.74  Aligned_cols=41  Identities=29%  Similarity=0.421  Sum_probs=33.0

Q ss_pred             CCceEEeC--------CeEEEcCCCCCC-CeEEEEEeccCCcceeEEEEE
Q psy11131          9 GPRTRVLG--------PILAIEGVTAED-SGTYRCSSSNIGGEATAEVRL   49 (150)
Q Consensus         9 ~~~~~~~~--------~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~l   49 (150)
                      +.|+.+..        ..|.|.++...| .|.|.|.+.|..|.....+.|
T Consensus        48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence            46776643        679999998877 789999999999988776665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.83  E-value=8.8e-05  Score=40.90  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=26.0

Q ss_pred             CCCceEEeC-----CeEEEcCCCCCCCeEEEEEeccC
Q psy11131          8 PGPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus         8 ~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .++|+....     .+|+|.++..+|+|.|.|.+...
T Consensus        48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            567777554     35999999999999999998753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.77  E-value=9.8e-05  Score=40.81  Aligned_cols=28  Identities=32%  Similarity=0.527  Sum_probs=23.4

Q ss_pred             CCCCCCeEEEEEeccCCcc-eeEEEEEEE
Q psy11131         24 VTAEDSGTYRCSSSNIGGE-ATAEVRLQV   51 (150)
Q Consensus        24 ~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v   51 (150)
                      ++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          71 KGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CCcCcCEEEEEEEEccccceecceEEEEe
Confidence            4789999999999999888 666677765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.75  E-value=3.3e-05  Score=41.02  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      +.|.|.++ .+|+|.|+|.+.+.
T Consensus        47 ~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          47 NSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEEeec-ccCCEEeEEECCCC
Confidence            78999999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.73  E-value=5.6e-05  Score=41.61  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=29.6

Q ss_pred             cCCCCceEEeC-CeEEEcCCCCCCCe-EEEEEeccCC
Q psy11131          6 VLPGPRTRVLG-PILAIEGVTAEDSG-TYRCSSSNIG   40 (150)
Q Consensus         6 ~~~~~~~~~~~-~~l~i~~~~~~d~G-~Y~C~~~~~~   40 (150)
                      +..+.|+.... +.|.|+++..+|.| .|.|.+.+..
T Consensus        46 i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          46 ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             ccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence            34567888765 99999999999999 7999999864

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.73  E-value=0.00051  Score=38.75  Aligned_cols=58  Identities=24%  Similarity=0.395  Sum_probs=40.1

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeecCcc---c--------C----------C-Ccc----------eeeEEEccC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ---I--------P----------G-RTS----------STSLVINPV  111 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~---~--------~----------~-~~~----------~~~l~~~~~  111 (150)
                      .+.+|+++.|.|... ...  ...+.|++....   .        .          . ..+          ...|.|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   79 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISE--NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV   79 (107)
T ss_pred             EEcCCCCEEEEEEEecCCC--CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence            467899999999986 321  457899864221   0        0          0 001          235899999


Q ss_pred             CCCCCceEEEEEE
Q psy11131        112 GREDRGIYQCIAR  124 (150)
Q Consensus       112 ~~~~~g~y~C~~~  124 (150)
                      ..+|+|.|.|...
T Consensus        80 ~~~Dsg~YyCa~~   92 (107)
T cd07700          80 KPEDSGTYFCMTV   92 (107)
T ss_pred             CHHHCEEEEEeEc
Confidence            9999999999976

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd00096 Ig Immunoglobulin domain

Probab=97.71  E-value=0.00032  Score=35.36  Aligned_cols=53  Identities=36%  Similarity=0.756  Sum_probs=39.9

Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCc------------ceeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT------------SSTSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      +.|.|... .+   ...+.|.+.+.......            ....+.+..+...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPP---PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCC---CCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            35789888 67   88999998765433211            05678888999999999999998654

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.70  E-value=0.00031  Score=38.12  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=39.7

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCC---------Ccc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG---------RTS----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~---------~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |+.+.+.|.+.  .|   .+.+.|+.++..+..         ...    .+.|.+......+...+.|.+.+...
T Consensus        14 ~~~~~~~C~s~~~~P---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYP---PPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS----EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeEC---CeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            67899999887  88   999999988766510         100    34566655544556679999998764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.70  E-value=0.00011  Score=42.13  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG   41 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~   41 (150)
                      .+|+|.+++.+|+|.|.|.+.+...
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          79 ASILIWQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eEEEEeeCChhhCEEEEEEEEeCCC
Confidence            5799999999999999999987543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.66  E-value=7.6e-05  Score=37.15  Aligned_cols=25  Identities=44%  Similarity=0.789  Sum_probs=22.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG   41 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~   41 (150)
                      ..|.|.++...|+|.|+|.+.+..|
T Consensus        39 ~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       39 STLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             cEEEEeeCCcccCEEEEEEEecCCC
Confidence            7899999999999999999987643

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.64  E-value=0.00017  Score=41.35  Aligned_cols=24  Identities=29%  Similarity=0.537  Sum_probs=21.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG   40 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~   40 (150)
                      .+|+|.+++.+|+|.|.|.+.+..
T Consensus        80 ~sL~I~~v~~~D~G~Y~C~v~~~~  103 (116)
T cd05715          80 ASIVIHNLQFTDNGTYTCDVKNPP  103 (116)
T ss_pred             eEEEEeeCCcccCEEEEEEEEeCC
Confidence            579999999999999999998753

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.63  E-value=5.2e-05  Score=41.74  Aligned_cols=25  Identities=32%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG   41 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~   41 (150)
                      .+|+|.+++.+|+|.|+|.+.+..+
T Consensus        65 ~~L~I~~l~~sDsgtY~C~v~~~~~   89 (94)
T cd07690          65 FPLIIKNLKIEDSDTYICEVEDKKE   89 (94)
T ss_pred             EEEEECCCCHHHCEEEEEEECCccc
Confidence            4699999999999999999988643

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG3515|consensus

Probab=97.63  E-value=0.00029  Score=51.93  Aligned_cols=107  Identities=18%  Similarity=0.205  Sum_probs=75.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec---CCCCCCcEEEEee
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT---PYDSGPYLIAWFK   92 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~---~p~~~~~~~~w~~   92 (150)
                      ..|...+..++.-+.|-|.+.|..+. ......+.|.+++.............+..+.+.|...   .|   .+.+.|..
T Consensus        59 ~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P---~~nlrW~~  135 (741)
T KOG3515|consen   59 PTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRP---NPNLRWGF  135 (741)
T ss_pred             CceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCC---Ccceeeee
Confidence            67778888888889999999987554 4456677777765544333344556778899999665   56   78999987


Q ss_pred             cCcccCCCcc----------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         93 DGRQIPGRTS----------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        93 ~~~~~~~~~~----------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +.........                .+.+.+......+.|.|+|.+.+.
T Consensus       136 n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  136 NNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             ccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence            7543221110                345666667788899999999984

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.54  E-value=0.0015  Score=34.28  Aligned_cols=54  Identities=19%  Similarity=0.456  Sum_probs=34.4

Q ss_pred             EEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      +.|.|.+.  .|.  ...+.|.+++..+.....              .+.|.+......+...|.|.+....
T Consensus         2 ~~L~C~a~gf~P~--~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPP--DITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCC--CCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            67899998  661  469999998875322110              2344444444455668999988543

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.53  E-value=0.00041  Score=38.94  Aligned_cols=57  Identities=23%  Similarity=0.450  Sum_probs=39.4

Q ss_pred             EecCCcEEEEEEec-CCCCCCcEEEEeecCc----cc------CC------------Ccc--------eeeEEEccCCCC
Q psy11131         66 VHLDGSANFQCEIT-PYDSGPYLIAWFKDGR----QI------PG------------RTS--------STSLVINPVGRE  114 (150)
Q Consensus        66 ~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~----~~------~~------------~~~--------~~~l~~~~~~~~  114 (150)
                      +.+|+.+.|.|... ..   ...+.|++...    ..      ..            ..+        ...|.|.++..+
T Consensus         3 v~~G~~vtL~C~~~~~~---~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s   79 (104)
T cd05720           3 AELGQKVELKCEVLNSS---PTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE   79 (104)
T ss_pred             ccCCCeEEEEEEecCCC---CCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence            46799999999876 43   55688876321    10      00            000        346999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |+|.|.|.+.+
T Consensus        80 DsgtY~Ca~~~   90 (104)
T cd05720          80 NEGYYFCSVAS   90 (104)
T ss_pred             HCEEEEEEEcc
Confidence            99999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.52  E-value=0.0004  Score=42.66  Aligned_cols=38  Identities=26%  Similarity=0.473  Sum_probs=32.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc-CCc-ceeEEEEEEEecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN-IGG-EATAEVRLQVSTP   54 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~-~~~-~~~~~~~l~v~~~   54 (150)
                      .+|.|.+++.+|+|.|.|.... +.| ..+...-|+|...
T Consensus        85 StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987         85 STILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             ceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence            7899999999999999998764 556 7888888988854

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.52  E-value=0.00031  Score=39.03  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +.|.+..++.+|+|.|+|.+.|.....+..+.|.|.
T Consensus        65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~  100 (101)
T cd05860          65 SELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN  100 (101)
T ss_pred             EEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence            679999999999999999999998888888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.49  E-value=0.0017  Score=35.62  Aligned_cols=57  Identities=26%  Similarity=0.438  Sum_probs=34.4

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCc----------c-eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT----------S-STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~----------~-~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ++.+.|.|.+.  .|.  ...+.|.+++.......          . ......-.+...+...|.|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~--~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPR--DIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCC--CcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            67799999999  561  34999999885221110          0 1111122233346778999998654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.45  E-value=0.00015  Score=40.99  Aligned_cols=35  Identities=31%  Similarity=0.412  Sum_probs=25.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC-CcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI-GGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~l~v   51 (150)
                      .+|.|.+++.+|+|.|.|.+... .......+.|+|
T Consensus        79 ~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   79 FSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             EEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             EEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            36999999999999999998765 223344455544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.43  E-value=0.00014  Score=36.82  Aligned_cols=18  Identities=61%  Similarity=0.964  Sum_probs=17.3

Q ss_pred             EEEcCCCCCCCeEEEEEe
Q psy11131         19 LAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        19 l~i~~~~~~d~G~Y~C~~   36 (150)
                      |.|.+++.+|+|.|+|.+
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            999999999999999985

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.32  E-value=0.0063  Score=34.61  Aligned_cols=59  Identities=15%  Similarity=0.402  Sum_probs=37.4

Q ss_pred             EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCc-eEEEEEEeCC
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRG-IYQCIARRSD  127 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g-~y~C~~~~~~  127 (150)
                      ...|+.+.|.|.+.  .|.  ...+.|++++..+.....             .+.|.+.. ...|.+ .|.|.+....
T Consensus        18 ~~~g~~~tL~C~a~gF~P~--~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPR--DITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCC--CCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            44677899999998  662  469999999877542211             12233332 233334 4999999754

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PHA02633 hypothetical protein; Provisional

Probab=97.31  E-value=0.0011  Score=33.00  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      ...|.|-++..+|+|.|.|.+.|..- ....++.+.|....
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~-c~~~si~l~V~~~~   56 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETY-SDMMKFDLCICLRI   56 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCe-eEEEEEEEEEeecc
Confidence            56788889999999999999997654 56666777775543

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.28  E-value=0.0029  Score=34.85  Aligned_cols=59  Identities=14%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ....+.|.|.+.  .|.  ...+.|.+++..+.....              .+.|.+....-.+...|.|.+.....
T Consensus        13 ~~~~~~L~C~a~gFyP~--~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          13 TSETIQLLCLISGYTPG--TIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCCEEEEEEEEeEECC--CCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            445689999998  663  578999998876522110              23333333222345679999986543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.28  E-value=0.0018  Score=36.13  Aligned_cols=60  Identities=18%  Similarity=0.356  Sum_probs=37.9

Q ss_pred             EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ...+..+.|.|.+.  +|.  ...+.|.++|..+.....              .+.|.+....-.+...|.|.+....
T Consensus        14 ~~~~~~~~L~C~~~gfyP~--~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          14 LEKSGKATLVCLINDFYPG--FATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HccCCCcEEEEEEEeEECC--CCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            33567799999998  553  578999999877632211              2333333322233567999998654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.26  E-value=0.00072  Score=36.15  Aligned_cols=28  Identities=21%  Similarity=0.602  Sum_probs=22.7

Q ss_pred             CCeEEEcCCCCCCCeEEEEEeccCCcceeE
Q psy11131         16 GPILAIEGVTAEDSGTYRCSSSNIGGEATA   45 (150)
Q Consensus        16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   45 (150)
                      .+.|.|.++  .|+|.|.|.+.|..|....
T Consensus        48 ~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          48 PSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            367888887  5889999999999886543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.25  E-value=0.00046  Score=38.93  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=25.5

Q ss_pred             CCCceEEeC------CeEEEcCCCCCCCeEEEEEeccC
Q psy11131          8 PGPRTRVLG------PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus         8 ~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      ..+|+.+..      .+|.|.+++.+|+|.|.|.+.+.
T Consensus        55 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   92 (109)
T cd04983          55 EKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES   92 (109)
T ss_pred             cCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            346665542      57999999999999999998764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.24  E-value=0.00045  Score=37.78  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      +.|.|.+++.+|+|.|+|.+.+.
T Consensus        53 ~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          53 AKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             EEEEccCCChhHCEEEEEEEECC
Confidence            56999999999999999998875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.23  E-value=0.017  Score=40.78  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=57.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC-Ccc--eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI-GGE--ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~   91 (150)
                      -.|.|.+++..++|.|.=...+. .+.  ....+.+.+..+|.+.+.+.  .+.+|+.-...|.+.  +|.. ...+.|+
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~-SvrlrWf  365 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPH-SVIVKWT  365 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCC-ceEEEEE
Confidence            45999999999999998655432 222  33445555566666555544  567899999999998  5532 7899999


Q ss_pred             ecCcccCC
Q psy11131         92 KDGRQIPG   99 (150)
Q Consensus        92 ~~~~~~~~   99 (150)
                      .++..+..
T Consensus       366 ~ng~~V~~  373 (566)
T PHA03269        366 SNFGNIGK  373 (566)
T ss_pred             eCCcccCc
Confidence            99877653

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.22  E-value=0.02  Score=40.16  Aligned_cols=78  Identities=18%  Similarity=0.252  Sum_probs=57.1

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE--ecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeec
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKD   93 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v--~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~   93 (150)
                      .|.|..++..++|.|.=...+..+.......++|  ..+|.+.+.+.  .+.+|+.-...|.+.  +|.. ...+.|+.+
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~-Sv~~rWf~d  275 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHS-SVKLRWYKN  275 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCC-ceEEEEEeC
Confidence            3999999999999998655444444444445555  55666655554  567899999999998  5532 779999999


Q ss_pred             CcccC
Q psy11131         94 GRQIP   98 (150)
Q Consensus        94 ~~~~~   98 (150)
                      +..+.
T Consensus       276 g~~V~  280 (486)
T PHA03273        276 AKEVD  280 (486)
T ss_pred             Ceecc
Confidence            88776

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.17  E-value=0.0034  Score=36.02  Aligned_cols=64  Identities=17%  Similarity=0.306  Sum_probs=42.6

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc---------------C--CCcc----------eeeEEEcc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI---------------P--GRTS----------STSLVINP  110 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~---------------~--~~~~----------~~~l~~~~  110 (150)
                      |....+.+|+.+.|.|... ... ....+.|++..  ...               .  ...+          ...|.|.+
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~-~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTF-TSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCc-ccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            4556788999999999865 210 03568887632  110               0  0011          13689999


Q ss_pred             CCCCCCceEEEEEEe
Q psy11131        111 VGREDRGIYQCIARR  125 (150)
Q Consensus       111 ~~~~~~g~y~C~~~~  125 (150)
                      +..+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.14  E-value=0.0064  Score=33.48  Aligned_cols=54  Identities=22%  Similarity=0.411  Sum_probs=35.4

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .+....|.|.+.  +|.  ...+.|.++|..+..+..              .+.|.+.   ..+...|.|.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~--~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPP--VLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECC--cCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            355679999998  663  578999999877543211              2334333   23455799999864

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>smart00406 IGv Immunoglobulin V-Type

Probab=97.12  E-value=0.0014  Score=34.52  Aligned_cols=21  Identities=38%  Similarity=0.643  Sum_probs=17.5

Q ss_pred             eeeEEEccCCCCCCceEEEEE
Q psy11131        103 STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      ...|.|.+++.+|+|.|.|.+
T Consensus        61 ~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       61 DVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEEcCCCHHHCEEEEEcC
Confidence            357889999999999999963

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.12  E-value=0.00038  Score=36.04  Aligned_cols=22  Identities=50%  Similarity=0.812  Sum_probs=20.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      +.|.|.++..+|.|.|+|.+.|
T Consensus        54 ~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   54 STLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEESSCCGGGTEEEEEEEEE
T ss_pred             eEEEEccCCHHhCcEEEEEEEC
Confidence            7899999999999999999875

...

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.10  E-value=0.025  Score=39.41  Aligned_cols=79  Identities=15%  Similarity=0.229  Sum_probs=57.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCccee--EEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEee
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEAT--AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFK   92 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~   92 (150)
                      ..|.|..++...+|.|+=...+..+...  ..+.+....+|.+.+.+.  .+..|+.-...|.+.  +|.. ...+.|+.
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~-Sv~lrWf~  258 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGD-RAAFRWFE  258 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCC-ceEEEEEe
Confidence            4599999999999999998665444322  334455555666655554  467899999999998  5532 67999999


Q ss_pred             cCcccC
Q psy11131         93 DGRQIP   98 (150)
Q Consensus        93 ~~~~~~   98 (150)
                      ++..+.
T Consensus       259 ng~~V~  264 (466)
T PHA03270        259 GGDEVF  264 (466)
T ss_pred             CCcccc
Confidence            988764

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.10  E-value=0.00063  Score=35.77  Aligned_cols=35  Identities=40%  Similarity=0.612  Sum_probs=26.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc-ceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG-EATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v   51 (150)
                      ..+.|.++..+|.|.|.|.+.+..+ ..+..+.|+|
T Consensus        45 ~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   45 NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            3477889999999999999988644 3455555554

...

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.10  E-value=0.0024  Score=32.34  Aligned_cols=51  Identities=18%  Similarity=0.304  Sum_probs=34.2

Q ss_pred             ecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEe
Q psy11131         67 HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        67 ~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      ..|.+|.|.|+..     ...+.|.+++..+...  ...+.+.+-. ++.|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~-----~~~i~W~~n~~~~~g~--~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLS-----GDDIKWKKNDQVSQGS--DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCC-----CCCceEEeCCccCCCC--CceEEeeccC-CCCceEEEEeCC
Confidence            4688899999754     2238999988654432  2334444444 789999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.07  E-value=0.00046  Score=38.58  Aligned_cols=25  Identities=40%  Similarity=0.615  Sum_probs=21.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG   41 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~   41 (150)
                      .+|.|.+++.+|+|.|.|.+.+..+
T Consensus        67 ~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          67 FTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCC
Confidence            4799999999999999999987543

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.06  E-value=0.0096  Score=32.71  Aligned_cols=57  Identities=18%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------eeeEE---EccCCCCCCceEEEEEEeC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------STSLV---INPVGREDRGIYQCIARRS  126 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~---~~~~~~~~~g~y~C~~~~~  126 (150)
                      ..|....|.|.+.  +|.  ...+.|.++|..+. +..        ...+.   ...+...+...|.|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~--~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPP--DIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCC--CCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            3466678999998  553  67899999998764 221        11111   1122344556799999864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.03  E-value=0.011  Score=32.60  Aligned_cols=56  Identities=18%  Similarity=0.316  Sum_probs=36.8

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .++.+.|.|.+.  +|.  ...+.|.+++..+.....              .+.|.   +...+...|.|.+.....
T Consensus        13 ~~~~~~L~C~~~gFyP~--~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~---~~~~~~~~ysC~V~H~~l   84 (94)
T cd05766          13 LSHPHLLVCHVWGFYPP--EITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLE---TTPSRGDTYTCVVEHSSL   84 (94)
T ss_pred             CCCCeEEEEEEeeecCC--CCEEEEEECCeecCCCceecceEECCCCcEEEEEEEE---EcCCCCCEEEEEEEeCCC
Confidence            578899999999  662  458999999876543210              12232   233455579999986543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.01  E-value=0.0013  Score=37.25  Aligned_cols=31  Identities=32%  Similarity=0.353  Sum_probs=24.4

Q ss_pred             CCceEEeC-----CeEEEcCCCCCCCeEEEEEeccC
Q psy11131          9 GPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus         9 ~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      ++|+....     ..|.|.+++.+|+|.|.|.+...
T Consensus        59 ~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          59 KDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLG   94 (110)
T ss_pred             CCceEEECcCCCccEEEECCCChhhCEEEEEEeeCC
Confidence            35665433     56999999999999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.00  E-value=0.0094  Score=31.87  Aligned_cols=56  Identities=20%  Similarity=0.484  Sum_probs=37.2

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+..+.|.|.+.  .|.  ...+.|.+++..+.....              .+.+.+.   ..+...|.|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~--~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPK--DITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSS--TEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECC--CcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            377899999998  662  558999998876543221              2334444   3445579999986544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.99  E-value=0.0054  Score=34.33  Aligned_cols=30  Identities=17%  Similarity=0.619  Sum_probs=22.8

Q ss_pred             EecCCcEEEEEEec--CCCCCCcEEEEeecCccc
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI   97 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~   97 (150)
                      +..+..+.|.|.+.  +|.  ...+.|.+++..+
T Consensus        13 ~~~~~~~tL~C~a~gFyP~--~i~v~W~k~g~~~   44 (102)
T cd05768          13 LSLQETATLTCLVKGFSPS--DIFVKWLQNGQPL   44 (102)
T ss_pred             hCcCCceEEEEEEeeEeCC--CCEEEEEECCEEC
Confidence            34467899999998  662  4588999988654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.97  E-value=0.013  Score=32.39  Aligned_cols=56  Identities=11%  Similarity=0.143  Sum_probs=35.5

Q ss_pred             CcEEEEEEec--CCCCCCcEEEEeecCccc-C------CCcc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         70 GSANFQCEIT--PYDSGPYLIAWFKDGRQI-P------GRTS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        70 ~~~~l~C~~~--~p~~~~~~~~w~~~~~~~-~------~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ....+.|.+.  .|   .+.+.|+++.... .      ....   .+.|.+......+...|.|.+.+...
T Consensus        16 ~~~va~C~s~~gkP---~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l   83 (95)
T cd05719          16 PVTVATCVSANGKP---PATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL   83 (95)
T ss_pred             ccEEEEEECCCCcC---CCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            4567889997  88   9999999861111 0      0000   34555554444555579999998754

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=96.96  E-value=0.0016  Score=36.00  Aligned_cols=29  Identities=28%  Similarity=0.395  Sum_probs=23.3

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      +|+....    .+|.|.++..+|+|.|.|.+.+
T Consensus        52 ~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   84 (98)
T cd04984          52 DRFSGSKSGNTASLTISGAQTEDEADYYCQVWD   84 (98)
T ss_pred             CCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence            4665543    4699999999999999998764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.93  E-value=0.0024  Score=35.32  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        64 ~~L~I~~v~~~DsG~Y~C~~~~~   86 (98)
T cd05716          64 FTVTLNQLRKEDAGWYWCGVGDD   86 (98)
T ss_pred             EEEEEcCCCHHHCEEEEEEcccC
Confidence            47999999999999999988764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.91  E-value=0.00048  Score=36.37  Aligned_cols=28  Identities=32%  Similarity=0.542  Sum_probs=22.1

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .+|+.+..      .+|.|.+++.+|+|.|.|.+
T Consensus        48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence            35665543      56999999999999999963

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.88  E-value=0.0018  Score=37.31  Aligned_cols=30  Identities=37%  Similarity=0.369  Sum_probs=24.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      +|+.+..      .+|+|.+++.+|+|.|.|.+...
T Consensus        67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            4766632      57999999999999999987653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA03376 BARF1; Provisional

Probab=96.88  E-value=0.013  Score=36.40  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=43.6

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc---c--------------cCCCc--------ceeeEEEccCCCCCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR---Q--------------IPGRT--------SSTSLVINPVGREDR  116 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~---~--------------~~~~~--------~~~~l~~~~~~~~~~  116 (150)
                      .+....|+.+.|.|.-. ......-.+.|++.+.   .              .....        ...+|.|.++...|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            34567789999999865 2211267888988422   0              00000        045788999999999


Q ss_pred             ceEEEEEEeCC
Q psy11131        117 GIYQCIARRSD  127 (150)
Q Consensus       117 g~y~C~~~~~~  127 (150)
                      |.|.|.++...
T Consensus       100 GtY~C~fQkge  110 (221)
T PHA03376        100 GNYLCRMKLGE  110 (221)
T ss_pred             ceEEEEEEcCC
Confidence            99999998654

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.84  E-value=0.013  Score=32.34  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=36.0

Q ss_pred             CcEEEEEEec--CCCCCCcEEEEeecCcccC-------CCcc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         70 GSANFQCEIT--PYDSGPYLIAWFKDGRQIP-------GRTS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        70 ~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~-------~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ....+.|.+.  .|   .+.+.|+.+.....       .+..   .+.|.+......+...|.|.+.+...
T Consensus        16 ~~~va~C~s~~gkP---aa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al   83 (95)
T cd07703          16 PVPVAKCVSANGRP---PARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL   83 (95)
T ss_pred             ccEEEEEEcCCCCC---CcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            4478899887  78   99999998621110       0111   34555555455555679999998754

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>KOG3515|consensus

Probab=96.83  E-value=0.011  Score=44.18  Aligned_cols=121  Identities=16%  Similarity=0.112  Sum_probs=78.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      +.+.+.++...|.|.|.|.+.+..|.......+.+...+.............+..+...|... .+.. ...+.|.+.+.
T Consensus       458 ~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~-~~m~~~~r~ge  536 (741)
T KOG3515|consen  458 GLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQD-QQMHHEPRSGE  536 (741)
T ss_pred             cccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccc-hhhhcccccCC
Confidence            334467899999999999999998888887777777665544333334455666688889887 5521 55677877654


Q ss_pred             ccCCCc----------ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         96 QIPGRT----------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        96 ~~~~~~----------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ......          ....+.......-..+.|.|.+.+ .+........+.+
T Consensus       537 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~pA~~~~~l~~  589 (741)
T KOG3515|consen  537 PPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG-SSPPAGLSLVLKA  589 (741)
T ss_pred             CCcccccccccccccCCccceeecccccccccceEEeecC-CCCccccceEEEe
Confidence            432110          034555566666667899999998 3323333334443

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.82  E-value=0.0083  Score=30.72  Aligned_cols=48  Identities=27%  Similarity=0.492  Sum_probs=34.5

Q ss_pred             CcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEe
Q psy11131         70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        70 ~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      +.+.|.|..      ...+.|++ |..+.... ...+.+-....+-.|.|.|.+.+
T Consensus         7 ~~V~L~C~~------~tsi~W~k-G~~~~~~~-~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           7 GKVFLKCNG------ATNITWKK-GKEILEVS-NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ceEEEEecC------CCcEEEec-Cccccccc-ccEEeccCcccCCCcceEecCcc
Confidence            468888954      34599999 55444332 46777777778889999998765

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.82  E-value=0.0015  Score=36.65  Aligned_cols=29  Identities=31%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|+....    ..|.|.++..+|+|.|.|.+.+
T Consensus        60 ~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~   92 (106)
T cd04980          60 SRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYG   92 (106)
T ss_pred             CCEEEeccCCEEEEEECCCChHHCEEEEEEEeC
Confidence            4565533    4699999999999999998754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.79  E-value=0.014  Score=32.32  Aligned_cols=59  Identities=20%  Similarity=0.352  Sum_probs=38.8

Q ss_pred             EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCc------------ceeeEEEccCCCCCCc-eEEEEEEeC
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT------------SSTSLVINPVGREDRG-IYQCIARRS  126 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g-~y~C~~~~~  126 (150)
                      +.+|..+.+.|.+.  .|.. ...+.|++....+....            ....++|... .+|.| .|.|.+.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~-~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFD-RLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCC-ceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            47899999999998  6611 47889987554322111            1345666654 66666 799998743

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.69  E-value=0.012  Score=33.75  Aligned_cols=60  Identities=20%  Similarity=0.386  Sum_probs=36.8

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCc------------c---eeeEEEccCCCCC-CceEEEEEEeCCC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT------------S---STSLVINPVGRED-RGIYQCIARRSDG  128 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~------------~---~~~l~~~~~~~~~-~g~y~C~~~~~~g  128 (150)
                      ..+..+.|.|.+.  +|.  ...+.|.+++..+....            .   .+.|.+....-.+ ...|.|.+.....
T Consensus        16 ~~~~~~tL~Cla~gFyP~--~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~   93 (115)
T cd05769          16 RNKRKATLVCLATGFYPD--HVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG   93 (115)
T ss_pred             ccCCCcEEEEEEEeEeCC--CcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence            3456789999998  662  36999999886643221            0   2334433322223 4579999986543

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.62  E-value=0.0043  Score=36.12  Aligned_cols=72  Identities=14%  Similarity=0.226  Sum_probs=40.9

Q ss_pred             ecCCcEEEEEEec--CC-CCCCcEEEEeecCcccCCCcc---------------------eeeEEEccCCCCCCceEEEE
Q psy11131         67 HLDGSANFQCEIT--PY-DSGPYLIAWFKDGRQIPGRTS---------------------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p-~~~~~~~~w~~~~~~~~~~~~---------------------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      .-.+++.|+|.+.  .. .-....+.|..++..+-....                     .++|.+.....- .|.|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            4578899999986  22 111567999877654321110                     234666654433 7999999


Q ss_pred             EEeCCCCceeeeEEEEEc
Q psy11131        123 ARRSDGDVAQGSAELQLG  140 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~  140 (150)
                      +..... ..+..+.|...
T Consensus       104 Vt~~~~-ege~~i~Lk~~  120 (130)
T PF08204_consen  104 VTELSR-EGETTIELKYR  120 (130)
T ss_dssp             EEETTE-EEEEEEEEEE-
T ss_pred             EEecCC-CceEEEEEEEE
Confidence            997766 56777777663

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.58  E-value=0.046  Score=30.25  Aligned_cols=56  Identities=13%  Similarity=0.229  Sum_probs=34.7

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      ..+..+.|.|.+.  .|.  ...+.|.++|..+.....             .+.|.+..-.  ....|.|.+...
T Consensus        14 ~~~~~~tL~C~a~gFyP~--~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~   84 (96)
T cd07697          14 EKQGQGIYLCLLENFFPD--VIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE   84 (96)
T ss_pred             ccCCCEEEEEEEEEEeCC--CeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence            3456789999998  663  678999999876532211             2233333221  233599999864

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.46  E-value=0.0027  Score=36.27  Aligned_cols=30  Identities=33%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ++|+.+..      .+|.|.++..+|+|.|.|.+..
T Consensus        58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST   93 (116)
T ss_pred             CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence            36776641      4799999999999999998874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.42  E-value=0.025  Score=31.49  Aligned_cols=61  Identities=16%  Similarity=0.338  Sum_probs=35.9

Q ss_pred             EecCCcEEEEEEec--C-CCCCCcEEEEeecCcccC-------CCcc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         66 VHLDGSANFQCEIT--P-YDSGPYLIAWFKDGRQIP-------GRTS----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~-p~~~~~~~~w~~~~~~~~-------~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ...+..+.|.|.+.  + |.  ...+.|.+++..-.       ....    .+.|.+..-.-.....|.|.|.....
T Consensus        16 l~~~~~atLtClV~~f~~P~--~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPE--GAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCC--CeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            44577899999998  5 63  57899998875310       0000    23333332111233459999987654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.42  E-value=0.0035  Score=35.18  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=23.2

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|+....    ..|.|.++..+|+|.|.|.+..
T Consensus        57 ~~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          57 SKRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             CceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            34565433    4699999999999999998653

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.33  E-value=0.059  Score=29.73  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcc
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQ   96 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~   96 (150)
                      .++.+.|.|.+.  .|.  ...+.|.+++..
T Consensus        15 ~~~~~~L~C~a~gFyP~--~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPE--PVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECC--CcEEEEeECCEE
Confidence            456789999998  553  678999999875

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.31  E-value=0.028  Score=30.41  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=27.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      .+|.+..+...|+|.++|.+..........+.+.|.
T Consensus        51 ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl   86 (88)
T cd07694          51 KTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL   86 (88)
T ss_pred             cEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence            678999999999999999987653334455555554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.30  E-value=0.024  Score=31.72  Aligned_cols=42  Identities=24%  Similarity=0.335  Sum_probs=30.0

Q ss_pred             CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCccee-EEEEEEE
Q psy11131         10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v   51 (150)
                      .|+.++.  ..|.|..+...|+|.|.-++.+..|... ..+.+.|
T Consensus        62 ~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   62 NRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             HHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             ceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            4555555  7899999999999999999999877753 3455444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.21  E-value=0.0034  Score=35.82  Aligned_cols=30  Identities=27%  Similarity=0.393  Sum_probs=23.7

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|+.+..      ..|.|.+++.+|+|.|.|.+..
T Consensus        63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence            35666542      4699999999999999998764

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG1480|consensus

Probab=96.19  E-value=0.0042  Score=46.02  Aligned_cols=79  Identities=19%  Similarity=0.278  Sum_probs=58.6

Q ss_pred             eCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      ..+....+.++..+.+.|...  .|   ...+.|++++..+.....     ...+.+..+...|.|.|+|.+.|..+...
T Consensus       134 ~~p~~q~V~~~s~~~l~cr~pe~~p---aae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~  210 (909)
T KOG1480|consen  134 QSPVGQEVQEETTLQLPCRPPEGDP---KAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRK  210 (909)
T ss_pred             cChhhheecccccccccccCcccch---hhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcccc
Confidence            344555677788889999887  66   778999999877665332     56788888899999999999999876445


Q ss_pred             eeeEEEEEc
Q psy11131        132 QGSAELQLG  140 (150)
Q Consensus       132 ~~~~~l~v~  140 (150)
                      ..++.+.+.
T Consensus       211 ~~~~~v~vy  219 (909)
T KOG1480|consen  211 SDPATVQVY  219 (909)
T ss_pred             ccceEEEEE
Confidence            555555443

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.16  E-value=0.26  Score=34.36  Aligned_cols=62  Identities=15%  Similarity=0.249  Sum_probs=42.6

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCC-------------------------------CcceeeEEEccCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG-------------------------------RTSSTSLVINPVG  112 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~-------------------------------~~~~~~l~~~~~~  112 (150)
                      .+..|.++.+.|... ........+.|..-+-.+.+                               +...++|+|..+.
T Consensus       275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~  354 (500)
T PHA02914        275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH  354 (500)
T ss_pred             EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence            456699999999987 33222677888654322110                               0004789999999


Q ss_pred             CCCCceEEEEEEeC
Q psy11131        113 REDRGIYQCIARRS  126 (150)
Q Consensus       113 ~~~~g~y~C~~~~~  126 (150)
                      .+..|=|.|.+...
T Consensus       355 I~N~GCY~~~a~~g  368 (500)
T PHA02914        355 INNAGCYEAQAFMG  368 (500)
T ss_pred             EEcCCceEEEEecC
Confidence            99999999999854

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.09  E-value=0.29  Score=34.31  Aligned_cols=79  Identities=18%  Similarity=0.243  Sum_probs=53.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEe-cCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVS-TPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~-~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~   91 (150)
                      -.|.|.++-..|.|.|+-...+....  ......+.+. .+|.+.+.+.  .+..|+.-...|.+.  +|.. ...+.|+
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~-SvrlrWf  283 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPG-SVYVSWR  283 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCC-ceEEEEE
Confidence            56899999999999775555443222  2333444443 3444555444  467899999999998  5533 6799999


Q ss_pred             ecCcccC
Q psy11131         92 KDGRQIP   98 (150)
Q Consensus        92 ~~~~~~~   98 (150)
                      .+|....
T Consensus       284 ~nG~~V~  290 (490)
T PHA03271        284 QNGNIAT  290 (490)
T ss_pred             eCCcccc
Confidence            9886543

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=96.05  E-value=0.028  Score=29.87  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG   40 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~   40 (150)
                      +.|.|......|.|.|+|.+.+..
T Consensus        46 s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759          46 STLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             EEEEEeCceecCCCEEEEEEcCcc
Confidence            567888877888899999998864

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.04  E-value=0.11  Score=28.85  Aligned_cols=62  Identities=8%  Similarity=0.167  Sum_probs=39.0

Q ss_pred             EEEecCCcEEE-EEEec--CCCCCCcEEEEeecCcccCCC------c-c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         64 LSVHLDGSANF-QCEIT--PYDSGPYLIAWFKDGRQIPGR------T-S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        64 ~~~~~g~~~~l-~C~~~--~p~~~~~~~~w~~~~~~~~~~------~-~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..+.+|..+.+ .|.+.  .|   .+.+.|+.+.......      . .   .+.+.+......|.-.+.|.+....-
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkP---aa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRP---AADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eEeecCcceeEEEEEccCCcc---CCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            34566777777 88887  78   9999999763221100      0 1   34555544445555679999987643

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=96.03  E-value=0.019  Score=33.96  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.4

Q ss_pred             eeEEEccCCCCCCceEEEEEEeCCC
Q psy11131        104 TSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus       104 ~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ++|.|.++...|+|.|.|.+.+..+
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~   25 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPH   25 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCc
Confidence            3689999999999999999998777

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.99  E-value=0.032  Score=30.85  Aligned_cols=30  Identities=17%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             EEEecCCcEEEEEEec-C--CCCCCcEEEEeecCc
Q psy11131         64 LSVHLDGSANFQCEIT-P--YDSGPYLIAWFKDGR   95 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~--p~~~~~~~~w~~~~~   95 (150)
                      ..+..++.+.|.|.+. .  |.  ...+.|.++++
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~--~i~v~W~r~~~   41 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPE--GVNVTWTRGSG   41 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCC--CcEEEEEECCe
Confidence            3455678899999998 6  42  56889999863

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=95.97  E-value=0.0059  Score=34.39  Aligned_cols=21  Identities=48%  Similarity=0.694  Sum_probs=18.8

Q ss_pred             eEEEcCCCCCCCeEEEEEecc
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|+|.++..+|+|.|.|....
T Consensus        73 ~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          73 RLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             EEEECCCCHHHCEEEEEeEcC
Confidence            599999999999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.86  E-value=0.012  Score=38.20  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=27.7

Q ss_pred             cCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccC
Q psy11131          6 VLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus         6 ~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      +....++.++. +.|.+.+...+++|.|+|.....
T Consensus        25 l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   25 LSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             cCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            34455677777 89999999999999999987653

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=95.74  E-value=0.019  Score=30.57  Aligned_cols=26  Identities=12%  Similarity=0.127  Sum_probs=22.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE   42 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~   42 (150)
                      +.|.|.....+|.+.|+|++.|..+.
T Consensus        43 s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885          43 NTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEEeeeccCCcEEEEEEEChhhC
Confidence            67999999999999999999997543

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=95.73  E-value=0.018  Score=31.61  Aligned_cols=21  Identities=38%  Similarity=0.678  Sum_probs=18.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..+.|.+++.+|+|.|.|...
T Consensus        55 a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          55 ASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEEEecCCCcccCEEEEEEEE
Confidence            568999999999999999864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PHA03042 CD47-like protein; Provisional

Probab=95.66  E-value=0.11  Score=34.12  Aligned_cols=71  Identities=20%  Similarity=0.264  Sum_probs=43.9

Q ss_pred             ecCCcEEEEEEecCC---CCCCcEEEEeecCcccCCCc--ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         67 HLDGSANFQCEITPY---DSGPYLIAWFKDGRQIPGRT--SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        67 ~~g~~~~l~C~~~~p---~~~~~~~~w~~~~~~~~~~~--~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      .-.+++.++|....+   .-....+.|..++..+-..+  ..++|.+..... -.|.|+|++.+... ....+..++-
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f~~~-l~GNYTCEv~~l~n-~gk~~IeLk~  104 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNFSKN-LSGNYTCEAINKFN-KIKNTIELQY  104 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEecccc-CCCceeEEEeeccc-CccEEEEEEE
Confidence            356889999998721   11156799988876543222  134565554332 36999999997655 3455555543

>cd00096 Ig Immunoglobulin domain

Probab=95.44  E-value=0.038  Score=27.35  Aligned_cols=24  Identities=54%  Similarity=0.794  Sum_probs=21.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG   40 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~   40 (150)
                      ..|.|.++...|.|.|.|.+.+..
T Consensus        43 ~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          43 STLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEECccCcccCcEEEEEEecCc
Confidence            679999999999999999988754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.29  E-value=0.038  Score=36.01  Aligned_cols=41  Identities=12%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             CcEEEEeecCcccCCCc-c-----eeeEEEccCCCCCCceEEEEEEe
Q psy11131         85 PYLIAWFKDGRQIPGRT-S-----STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        85 ~~~~~w~~~~~~~~~~~-~-----~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      .|.+.|...+.....+. .     ...|++.+....++|.|+|...-
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEE
Confidence            67899987544333232 1     56799999999999999999874

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03052 Hypothetical protein; Provisional

Probab=95.25  E-value=0.1  Score=26.55  Aligned_cols=37  Identities=14%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI   97 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~   97 (150)
                      |....+..|+.+.+.|++. .++.+.+.+.|..|+...
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            3556778899999999999 664446788898888776

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=94.93  E-value=0.34  Score=27.74  Aligned_cols=62  Identities=16%  Similarity=0.280  Sum_probs=38.0

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc-ccC--------------CCcc----------eeeEEEccCCCCCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR-QIP--------------GRTS----------STSLVINPVGREDR  116 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~-~~~--------------~~~~----------~~~l~~~~~~~~~~  116 (150)
                      ...+..|..+.|.|... .--...-.+.|.+... .+.              ...+          ...|.+.++..+|.
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT   86 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT   86 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence            34566777899999885 2200025777766321 100              0000          45788899999999


Q ss_pred             ceEEEEEE
Q psy11131        117 GIYQCIAR  124 (150)
Q Consensus       117 g~y~C~~~  124 (150)
                      +.|.|...
T Consensus        87 a~Y~Ca~e   94 (115)
T cd05721          87 DIYFCKIE   94 (115)
T ss_pred             eEEEEEee
Confidence            99999753

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=94.89  E-value=0.02  Score=32.87  Aligned_cols=29  Identities=24%  Similarity=0.433  Sum_probs=22.7

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|+....      ..|.|.++..+|+|.|.|....
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            4666542      2699999999999999997654

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.57  E-value=0.19  Score=28.25  Aligned_cols=37  Identities=19%  Similarity=0.375  Sum_probs=28.4

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131        103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ...|.|..+...|+|.|..++++..|......+.+.|
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            5689999999999999999999999855555555555

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=94.30  E-value=0.45  Score=26.05  Aligned_cols=82  Identities=20%  Similarity=0.264  Sum_probs=48.6

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQG  133 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~  133 (150)
                      +.+.|....+..|+.+.++|... ..   +....|.-.  ...+.....=..+.+.++.. | ....|.+.= .|.+...
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCStsC~~---p~~~GLET~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C-~g~Q~~~   79 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTSCPQ---PEKIGLETSLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNC-SGEQSSA   79 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEESSSS----SEEEEESSSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEE-TTEEEEE
T ss_pred             EEEECCccEECCCCCEEEEEcCCCCC---CCcceEEEecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEc-CCeEEEe
Confidence            34456777888999999999998 33   334455321  11111111123566677765 3 466788774 4556788


Q ss_pred             eEEEEEcCcCc
Q psy11131        134 SAELQLGGTRN  144 (150)
Q Consensus       134 ~~~l~v~~~p~  144 (150)
                      ++.++|..+|.
T Consensus        80 ~~~ItVY~~Pe   90 (91)
T PF03921_consen   80 SANITVYKPPE   90 (91)
T ss_dssp             EEEEEEEB--S
T ss_pred             EEeeEEeCCCC
Confidence            89999988875

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PHA02982 hypothetical protein; Provisional

Probab=93.96  E-value=0.26  Score=31.29  Aligned_cols=62  Identities=16%  Similarity=0.387  Sum_probs=43.7

Q ss_pred             EEEecCCcEEEEEEec--CCCCCCcEEEEeecCc-ccC----------C----------------CcceeeEEEccCCCC
Q psy11131         64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGR-QIP----------G----------------RTSSTSLVINPVGRE  114 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~-~~~----------~----------------~~~~~~l~~~~~~~~  114 (150)
                      +....++.+.|.|...  ..   ...+.|..+.. .+.          .                ....++|++.++...
T Consensus        34 v~a~vd~~V~L~C~~~~~~~---i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~  110 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADE---ISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQ  110 (251)
T ss_pred             hhccCCCcEEEEecCCCcch---hhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcc
Confidence            4456788999999965  33   66788876432 111          0                000578999999999


Q ss_pred             CCceEEEEEEeCCC
Q psy11131        115 DRGIYQCIARRSDG  128 (150)
Q Consensus       115 ~~g~y~C~~~~~~g  128 (150)
                      ..|=|+|.+....+
T Consensus       111 N~GCYtc~~ks~~~  124 (251)
T PHA02982        111 NLGCFTCEAKDAEG  124 (251)
T ss_pred             cCCceEEEEecCCC
Confidence            99999999997655

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=93.72  E-value=1.7  Score=30.61  Aligned_cols=106  Identities=16%  Similarity=0.245  Sum_probs=63.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCC-cEEEEEEec-CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG-SANFQCEIT-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~-~~~l~C~~~-~p~~~~~~~~w~~~~   94 (150)
                      ++|+|.++..+.+|.|.|++..+.-......=|.|.....+...      .++. ...+.|-+. .. ..++.+.|..+|
T Consensus       346 STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~------~e~~n~T~V~Cyv~sy~-~kp~si~wkvnG  418 (500)
T PHA02914        346 STLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWN------TEGDNETKVACYAAQYD-MQPFSILWKSNG  418 (500)
T ss_pred             ceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEE------eccCceEEEEEEEEecc-cCCceeEEEEcc
Confidence            78999999999999999999876544455545555544332221      1222 345678776 31 116678998776


Q ss_pred             cccCCC-----c----c------eeeEEEccCCCCC-CceEEEEEEeCCCC
Q psy11131         95 RQIPGR-----T----S------STSLVINPVGRED-RGIYQCIARRSDGD  129 (150)
Q Consensus        95 ~~~~~~-----~----~------~~~l~~~~~~~~~-~g~y~C~~~~~~g~  129 (150)
                      ....-.     .    .      ...+.|.+-...| .-.-.|+.....+.
T Consensus       419 V~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y  469 (500)
T PHA02914        419 VSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY  469 (500)
T ss_pred             EEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence            532100     0    0      3456665554444 34567888766553

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=93.07  E-value=0.18  Score=25.91  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=18.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.+.+....-.|.|+|.+.+
T Consensus        33 ~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691          33 TLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cEEeccCcccCCCcceEecCcc
Confidence            5678888889999999998866

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=92.27  E-value=0.2  Score=28.67  Aligned_cols=20  Identities=15%  Similarity=0.403  Sum_probs=18.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      -+|.|.+++.+|++.|.|..
T Consensus        74 v~L~l~~L~a~DTa~Y~Ca~   93 (115)
T cd05721          74 VNFTLQNLRANQTDIYFCKI   93 (115)
T ss_pred             EEEEEcCCCHHHCeEEEEEe
Confidence            46999999999999999965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03283 envelope glycoprotein E; Provisional

Probab=90.81  E-value=5  Score=29.34  Aligned_cols=37  Identities=22%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      +.|+|.+++..++|.|.-...+..+.....+.|+|..
T Consensus       134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~  170 (542)
T PHA03283        134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK  170 (542)
T ss_pred             CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence            6799999999999999998887666555556677765

>KOG4597|consensus

Probab=89.45  E-value=0.91  Score=32.53  Aligned_cols=72  Identities=17%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEee---cCccc--CCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFK---DGRQI--PGRTS--------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~---~~~~~--~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      ..+.++++..+.|-.. .+   .+.+.|.+   +...+  .....        ...|.|-+....|.|-|.|.+.+..| 
T Consensus       206 w~vg~wetcS~tCg~~G~q---~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g-  281 (560)
T KOG4597|consen  206 WFVGDWETCSSTCGVQGRQ---YRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG-  281 (560)
T ss_pred             hhcccchhhcccccccCCc---CceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc-
Confidence            3566788899999988 77   88999965   22211  11100        45788888999999999999999998 


Q ss_pred             ceeeeEEEEE
Q psy11131        130 VAQGSAELQL  139 (150)
Q Consensus       130 ~~~~~~~l~v  139 (150)
                      ...+.+.+.+
T Consensus       282 ~~~rdv~c~s  291 (560)
T KOG4597|consen  282 FLRRDVPCSS  291 (560)
T ss_pred             eeeccceeee
Confidence            4555555544

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.11  E-value=2.2  Score=22.73  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=23.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEe-ccCCcceeEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSS-SNIGGEATAEVRLQ   50 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~-~~~~~~~~~~~~l~   50 (150)
                      ..+.....+..|+|.+.|.+ .+..........|.
T Consensus        43 ~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~   77 (80)
T PF05790_consen   43 KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL   77 (80)
T ss_dssp             SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred             eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence            56677888999999999999 44433333333333

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=88.70  E-value=0.29  Score=28.70  Aligned_cols=35  Identities=20%  Similarity=0.459  Sum_probs=21.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      .+|.+.....- .|+|+|++..........+.|.+.
T Consensus        86 aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen   86 ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKYR  120 (130)
T ss_dssp             --EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE-
T ss_pred             EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEEE
Confidence            45777765444 899999998765555555555553

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03282 envelope glycoprotein E; Provisional

Probab=88.22  E-value=1.9  Score=31.01  Aligned_cols=44  Identities=34%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEe
Q psy11131          9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVS   52 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~   52 (150)
                      ++|+...+++|.|.+++.+|+|.|.-.+......  ....+.|.|.
T Consensus       116 ~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        116 PPRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             CcceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            5788888899999999999999999986543222  2333455554

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=87.19  E-value=3.4  Score=22.55  Aligned_cols=62  Identities=19%  Similarity=0.400  Sum_probs=36.9

Q ss_pred             CcEEEecCCcEEEEEEec-C-C-CCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT-P-Y-DSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~-p-~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      ....+..|+.+.+.|... . . ......+.|..++..++...-      .+.+++.+......-.|.|..
T Consensus        11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            334578899999999987 2 1 122678999887775544331      456666666555545566763

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=86.16  E-value=3.2  Score=22.23  Aligned_cols=36  Identities=14%  Similarity=0.166  Sum_probs=22.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc-ceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG-EATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v~   52 (150)
                      ++|.|..-...|-..|+|++.+..- .......|.|+
T Consensus        44 S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883          44 SQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            6677755545555599999988632 24455556554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae

Probab=85.92  E-value=2.6  Score=25.81  Aligned_cols=25  Identities=32%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG   41 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~   41 (150)
                      --|.|.+.+++|+|.|.-.+.-...
T Consensus       124 ~lL~i~~p~~~dsG~Y~lRV~l~~~  148 (161)
T PF01688_consen  124 VLLRIRNPRPEDSGIYYLRVWLDGA  148 (161)
T ss_pred             eEEEeCCCCcccceEEEEEEEECCC
Confidence            3489999999999999998876543

These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=80.71  E-value=6.7  Score=20.90  Aligned_cols=38  Identities=16%  Similarity=0.159  Sum_probs=24.1

Q ss_pred             CcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEE
Q psy11131         85 PYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        85 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      .+...|...+......  ............|.|.+.|.|.
T Consensus        26 ~~~~~l~~~~~k~~~~--~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   26 KPSLFLENPGKKSLET--KKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             CEEEEEECSSCEEEEE--SSEEEEESBTCGGSEEEEEEEE
T ss_pred             ChhheeeccCcccccc--ceEEEEecCCCCCCEEEEEEEc
Confidence            4566665544433211  3355566677889999999995

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		7e-16
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-15
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		3e-15
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		3e-15
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-08
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-07
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		2e-06
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		6e-06
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-05
3rjd_A	262	Crystal Structure Of Fc Ri And Its Implication To H		3e-05
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-05
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		3e-05
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-04
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-04
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-04

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
           V+   R + +   L I+    EDSG Y C  +N  G  + E  L V+ P    ++PP  +
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 354
Query: 66  VHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
           V     A F C+   Y   P   ++W KDG+ I G + S  L I  V +ED+G+YQC   
Sbjct: 355 VDFGRPAVFTCQ---YTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV- 408
Query: 125 RSDGDVAQGSAELQLGG 141
           R+D + A+ SAEL+LGG
Sbjct: 409 RNDRESAEASAELKLGG 425

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
           V+   R + +   L I+    EDSG Y C  +N  G  + E  L V+ P    ++PP  +
Sbjct: 262 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 321
Query: 66  VHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
           V     A F C+   Y   P   ++W KDG+ I G + S  L I  V +ED+G+YQC   
Sbjct: 322 VDFGRPAVFTCQ---YTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV- 375
Query: 125 RSDGDVAQGSAELQLG 140
           R+D + A+ SAEL+LG
Sbjct: 376 RNDRESAEASAELKLG 391

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
           V+   R + +   L I+    EDSG Y C  +N  G  + E  L V+ P    ++PP  +
Sbjct: 265 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 324
Query: 66  VHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
           V     A F C+   Y   P   ++W KDG+ I G + S  L I  V +ED+G+YQC   
Sbjct: 325 VDFGRPAVFTCQ---YTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV- 378
Query: 125 RSDGDVAQGSAELQLG 140
           R+D + A+ SAEL+LG
Sbjct: 379 RNDRESAEASAELKLG 394

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
           V+   R + +   L I+    EDSG Y C  +N  G  + E  L V+ P    ++PP  +
Sbjct: 259 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 318
Query: 66  VHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
           V     A F C+   Y   P   ++W KDG+ I G + S  L I  V +ED+G+YQC   
Sbjct: 319 VDFGRPAVFTCQ---YTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV- 372
Query: 125 RSDGDVAQGSAELQLG 140
           R+D + A+ SAEL+LG
Sbjct: 373 RNDRESAEASAELKLG 388

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 30  GTYRCSSSNIGGEATAEVRLQVS---TPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY 86
           G Y CS+SN  G A++  +L +S    P   D+ P  + + L  S  F+C +T   + P 
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT--GTAPI 227
Query: 87  LIAWFKDGRQI-PGRTSSTSLVIN-------PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            I W KD R+I PG     +LV N        V + D G Y C A    G   + S   Q
Sbjct: 228 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQ 284
Query: 139 LG 140
           LG
Sbjct: 285 LG 286

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 17  PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQ 75
           P+L I+ V  ED GTY C + NI G  T + R+ + + P  +DV   +     D  ++ +
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV---ITDTEADIGSDLR 313
Query: 76  CEITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVA 131
                       + W +DG+ +  +     S   L  + +  ED G+YQC+A    G V 
Sbjct: 314 WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV- 372
Query: 132 QGSAELQL 139
             SAEL +
Sbjct: 373 YASAELTV 380

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 20/136 (14%)
Query: 11  RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST---PYRVDVNPPLLSVH 67
           R   L   +  + VT ED+GTY C  S  GG +  EV++++     P +  VN P  S  
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIP-SSAT 120
Query: 68  LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST---------------SLVINPVG 112
           +   A   C      S P    WFKDG  +P    ST                LV +P+ 
Sbjct: 121 IGNRAVLTCSEQD-GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179
Query: 113 REDRGIYQCIARRSDG 128
             D G Y C AR   G
Sbjct: 180 ASDTGEYSCEARNGYG 195

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 16  GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
           G  L I  VT +DSGTY C  +      +A   L V  P     +P  L  +      F+
Sbjct: 274 GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFE 333
Query: 76  CEIT--PYDSGPYLIAWFKDGR--------QIPGRTSSTSLVINPVGREDRGIYQCIARR 125
           C ++  P  +    + W K+G         QI G    ++L I  V + D G YQC+A  
Sbjct: 334 CAVSGKPVPT----VNWMKNGDVVIPSDYFQIVG---GSNLRILGVVKSDEGFYQCVAEN 386
Query: 126 SDGDVAQGSAEL 137
             G+ AQ SA+L
Sbjct: 387 EAGN-AQSSAQL 397

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 10  PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLD 69
           P+     P L I  V+ ED GTY C + N  G  T + R+       V   P  L V  D
Sbjct: 249 PQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRI------IVQAQPEWLKVISD 302
Query: 70  GSA----NFQCEITPYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQC 121
             A    N +            + W ++G  +  +      +  L  + +  ED G+YQC
Sbjct: 303 TEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQC 362
Query: 122 IARRSDGDVAQGSAEL 137
           +A    G +   SAEL
Sbjct: 363 VAENKHGTI-YASAEL 377

>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High Affinity Immunoglobulin G Binding Length = 262

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY-----RVDVNPPLLSVHLDGSAN 73
           L I       +GTY CS        +A + + V   +        V  PLL  +L     
Sbjct: 133 LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNL---VT 189
Query: 74  FQCEITPYDSGPYL---IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
             CE       P L    +++   + + GR +S+   I    RED G+Y C A   DG+V
Sbjct: 190 LSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249
Query: 131 AQGSAELQL 139
            + S EL+L
Sbjct: 250 LKRSPELEL 258

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           +L +  ++ EDSG Y C + N  G A++   L+V  P      P  +        + +CE
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 78  I--TPYDSGPYLIAWFKDGRQ--------IPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
           +  TP    P+ ++W KD R+        I      TS+ I  V   D G YQC A    
Sbjct: 216 LQGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 128 G 128
           G
Sbjct: 272 G 272

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           +L +  ++ EDSG Y C + N  G A++   L+V  P      P  +        + +CE
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 78  I--TPYDSGPYLIAWFKDGRQ--------IPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
           +  TP    P+ ++W KD R+        I      TS+ I  V   D G YQC A    
Sbjct: 216 LQGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 128 G 128
           G
Sbjct: 272 G 272

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQC 76
           IL I     ED+G+Y C + N  G+  A+ +L   + P  V +    + V ++ S  ++C
Sbjct: 258 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND-IHVAMEESVFWEC 316
Query: 77  EITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
           +        Y   W K+G  +  R        +L I  V   D G+YQC+A    G V  
Sbjct: 317 KANGRPKPTY--RWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG-VIF 373
Query: 133 GSAELQL 139
            SAEL +
Sbjct: 374 SSAELSV 380

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQC 76
           IL I     ED+G+Y C + N  G+  A+ +L   + P  V +    + V ++ S  ++C
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND-IHVAMEESVFWEC 317
Query: 77  EITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
           +        Y   W K+G  +  R        +L I  V   D G+YQC+A    G V  
Sbjct: 318 KANGRPKPTY--RWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG-VIF 374
Query: 133 GSAELQL 139
            SAEL +
Sbjct: 375 SSAELSV 381

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 21/147 (14%)
Query: 16  GPILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRV-------DVNPPLLSVH 67
           G +L I+ + T  D   Y C +SN  GE +   RL V    ++       D+ P L  V 
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 68  LDGSANFQCEITPYDSGPYLIAWFKD----------GRQIPGRTSST-SLVINPVGREDR 116
              +A   C  +  +  P  I WFKD          GR    R+ S  +L I      D+
Sbjct: 122 RTRTATMLCAAS-GNPDPE-ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 117 GIYQCIARRSDGDVAQGSAELQLGGTR 143
           G Y+C+A  S G      A L + GT+
Sbjct: 180 GKYECVATNSAGTRYSAPANLYVRGTK 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-29
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-13
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-28
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-23
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-26
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-16
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-25
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-14
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-24
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-07
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-24
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-08
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-23
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-23
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-17
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-23
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-18
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-10
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-23
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-17
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-06
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-22
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-06
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-22
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-06
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-22
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-16
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-13
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-06
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-22
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-22
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-09
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-20
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-17
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-09
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	8e-22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-22
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-22
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-20
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-20
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-06
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-21
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-06
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-21
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-21
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-10
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-06
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-21
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-09
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-21
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-20
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-21
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-14
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-21
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-10
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-21
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-08
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-21
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-21
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-04
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-20
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-07
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-20
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-20
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-06
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-20
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-16
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-13
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-20
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-06
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-20
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-14
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-06
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-20
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-19
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-08
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-19
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-17
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-07
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-19
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-08
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-19
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-09
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-19
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-19
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-13
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-05
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-04
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-19
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-13
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-19
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-08
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	8e-19
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-06
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-18
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-06
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-18
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	7e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-05
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-18
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-18
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-18
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-07
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-10
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-18
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-10
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-18
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-17
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-17
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-17
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-17
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-07
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-17
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-09
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-16
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-12
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	9e-14
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-06
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-06
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-05
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-05
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-14
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	8e-14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	8e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-13
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-10
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	8e-14
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-04
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-13
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	6e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-13
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	7e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-10
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	9e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-12
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-04
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-12
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	9e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-12
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	5e-12
2ens_A	96	Advanced glycosylation END product-specific recept	5e-12
2ens_A	96	Advanced glycosylation END product-specific recept	1e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	6e-12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-06
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-12
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-11
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	2e-11
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-11
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	4e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	4e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-05
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-11
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-10
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	9e-11
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-07
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	9e-11
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	7e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	9e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-10
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-05
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	5e-10
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	5e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	5e-10
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	6e-10
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	9e-10
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-07
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-09
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-09
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-06
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	2e-09
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	5e-06
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-06
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-09
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-09
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-09
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-09
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	5e-09
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-06
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-09
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-09
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-08
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	7e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	7e-09
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-07
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	7e-09
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-08
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-08
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-08
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	5e-08
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-07
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	6e-08
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	6e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	6e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	9e-08
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	5e-07
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	9e-08
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-07
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-07
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-07
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-07
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	5e-07
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	6e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-06
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-06
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	1e-06
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	4e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-04
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-06
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-06
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-06
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	3e-06
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	6e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	6e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	6e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-05
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-04
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	3e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	6e-05
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	7e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-04
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	1e-04
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	2e-04
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	3e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-04
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	3e-04
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	3e-04
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	4e-04
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	4e-04
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	4e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	5e-04
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	6e-04
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	8e-04
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	8e-04

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  108 bits (272), Expect = 3e-29
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
           V+   R + +   L I+    EDSG Y C  +N  G  + E  L V+ P    ++PP  +
Sbjct: 259 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 318

Query: 66  VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
           V     A F C+ T  P  +    ++W KDG+ I    S + L I  V +ED+G+YQC  
Sbjct: 319 VDFGRPAVFTCQYTGNPIKT----VSWMKDGKAIG--HSESVLRIESVKKEDKGMYQCFV 372

Query: 124 RRSDGDVAQGSAELQLG 140
           R      A+ SAEL+LG
Sbjct: 373 RNDRES-AEASAELKLG 388

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 65.0 bits (158), Expect = 3e-13
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 19/157 (12%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAED------SGTYRCSSSNIGGEA-TAEVRLQVSTP 54
             +  +PG R       L      AED      +  Y C + N  G   + +V ++    
Sbjct: 44  TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 103

Query: 55  YRVDVNPPLLSVHLDGSANFQCEITPYDSGP-YLIAWFKDGRQIPGRTSST--------- 104
              + +     V    SA  +C I  + +    +++W  D  +     +           
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163

Query: 105 -SLVINPVGRED-RGIYQCIARRSDGDVAQGSAELQL 139
             L I  VG ED    YQC  +       + SA    
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 200

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 15/100 (15%)

Query: 54  PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-------SSTSL 106
           P  +      +       A  +C+ +   +    I W +      G         S   L
Sbjct: 4   PVFLKEPTNRIDFSNSTGAEIECKASG--NPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 107 VINPVGRED------RGIYQCIARRSDGDVAQGSAELQLG 140
           V  P   ED        +Y C+AR   G +      ++  
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 101

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  108 bits (272), Expect = 1e-28
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 9/138 (6%)

Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
           V+   R + +   L I+    EDSG Y C  +N  G  + E  L V+ P    ++PP  +
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 354

Query: 66  VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
           V     A F C+ T  P  +    ++W KDG+ I    S + L I  V +ED+G+YQC  
Sbjct: 355 VDFGRPAVFTCQYTGNPIKT----VSWMKDGKAIG--HSESVLRIESVKKEDKGMYQCFV 408

Query: 124 RRSDGDVAQGSAELQLGG 141
           R      A+ SAEL+LGG
Sbjct: 409 RNDRES-AEASAELKLGG 425

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 92.3 bits (229), Expect = 9e-23
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I  V A D G Y+C + +  G A    +L V     +       ++    +    C +
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI-RQMEKKAIVAGETLIVTCPV 550

Query: 79  TPYDSGPYL-IAWFKDGRQIP-----GRTSSTSLVINPVGR-EDRGIYQCIARRSDGDVA 131
             Y   P   I W +D R +P         + +L+I  V R  D+  Y C+A+  +G  A
Sbjct: 551 AGY---PIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSA 607

Query: 132 QGSAELQ 138
           +GS E+Q
Sbjct: 608 RGSLEVQ 614

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 85.0 bits (210), Expect = 3e-20
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           +L IE V A  +G + C + N+ G       L V  P R  + P   +      A  +C+
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECK 737

Query: 78  ITPYDSGPYLIAWFKDGRQIPG-----------RTSSTSLVINPVGREDRGIYQCIARRS 126
                  P  + W K     PG           R    +L ++ + + + G Y C A  +
Sbjct: 738 AD-GFPKP-QVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA-IN 794

Query: 127 DGDVAQGSAEL 137
                  +  +
Sbjct: 795 GIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 80.8 bits (199), Expect = 1e-18
 Identities = 31/131 (23%), Positives = 42/131 (32%), Gaps = 14/131 (10%)

Query: 19  LAIEGVT-AEDSGTYRCSSSNIGGE-ATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQ 75
           L IE V    D  TY C + N  G  A   + +QV   P  +          +       
Sbjct: 581 LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLH 640

Query: 76  CEITPYDSGPYLIAWFKDGRQIPGR---------TSSTSLVINPVGREDRGIYQCIARRS 126
           C +   D  P  I W  DG+ I               + L I  V     G + C A R+
Sbjct: 641 CSVPGGDL-PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHA-RN 698

Query: 127 DGDVAQGSAEL 137
                Q +  L
Sbjct: 699 LAGHQQFTTPL 709

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 73.4 bits (180), Expect = 3e-16
 Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 27/141 (19%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV---STPYRVDVNPPLLSVHLDGSANF 74
           +L IE V  ED G Y+C   N    A A   L++     P  +       ++    S   
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449

Query: 75  QCEIT----PYDSGPYLIAWFKDGRQIPG-------------RTSSTSLVINPVGREDRG 117
           +C       P       I+W  DG++I                   + L I  V   D G
Sbjct: 450 KCVAGGNPTP------EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503

Query: 118 IYQCIARRSDGDVAQGSAELQ 138
           +Y+CIA+   G VA+ SA+L 
Sbjct: 504 LYKCIAKSKVG-VAEHSAKLN 523

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 70.3 bits (172), Expect = 4e-15
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 19/157 (12%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAED------SGTYRCSSSNIGGEA-TAEVRLQVSTP 54
             +  +PG R       L      AED      +  Y C + N  G   + +V ++    
Sbjct: 79  TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 138

Query: 55  YRVDVNPPLLSVHLDGSANFQCEITPYDSGP-YLIAWFKDGRQIPGR----------TSS 103
              + +     V    SA  +C I  + +    +++W  D  +                S
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 198

Query: 104 TSLVINPVGRED-RGIYQCIARRSDGDVAQGSAELQL 139
             L I  VG ED    YQC  +       + SA    
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.1 bits (161), Expect = 1e-13
 Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 18/144 (12%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQ 75
           + +     +    +   +    G  T       +    P  +      +       A  +
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 76  CEITPYDSGPYLIAWFKDGRQIPG-------RTSSTSLVINPVGREDR------GIYQCI 122
           C+ +   +    I W +      G        +S   LV  P   ED        +Y C+
Sbjct: 61  CKAS--GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118

Query: 123 ARRSDGDVAQGSAELQLGGTRNIK 146
           AR   G +      ++    +  +
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYE 142

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 59.6 bits (144), Expect = 2e-11
 Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 28/136 (20%)

Query: 19  LAIEGVTAEDS-GTYRCSSSNIGGEAT---AEVRLQVSTPYRVDVNPPLLSVHL------ 68
           L I  V  ED   +Y+C + +     T   A     V T       P ++S+        
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTY 260

Query: 69  --DGSANFQCEIT--PYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGRE 114
               +    C     P         W+K                 +  S +L+I     E
Sbjct: 261 SGSSTMALLCPAQGYPVPV----FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 316

Query: 115 DRGIYQCIARRSDGDV 130
           D G Y C+   S G  
Sbjct: 317 DSGKYLCVVNNSVGGE 332

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVR-LQVSTP 54
           +      RV    L ++ +   + G Y C + N  G   + V  + V   
Sbjct: 762 LKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  101 bits (252), Expect = 2e-26
 Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 11/140 (7%)

Query: 5   LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLL 64
            +    R      IL I     ED+G+Y C + N  G+  A+ +L              +
Sbjct: 246 PIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDI 305

Query: 65  SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG----RTSSTSLVINPVGREDRGI 118
            V ++ S  ++C+    P  +      W K+G  +      +    +L I  V   D G+
Sbjct: 306 HVAMEESVFWECKANGRPKPT----YRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGM 361

Query: 119 YQCIARRSDGDVAQGSAELQ 138
           YQC+A    G     SAEL 
Sbjct: 362 YQCVAENKHGV-IFSSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 10/147 (6%)

Query: 2   EPLLVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATA-EVRLQVSTPYRVDV 59
             + +    R  V+ G +L       +D+GTY+C ++N  G   + E +LQ +       
Sbjct: 47  TDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKT 106

Query: 60  NPP-LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVG 112
                +SV         C   P  SG    AW  +               + +L I  V 
Sbjct: 107 RTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVE 165

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQL 139
           + D G Y C+   +  +         L
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPL 192

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 23/138 (16%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEAT---AEVRLQVST--------PYRVDVNPPLLSVH 67
           L I  V   D G Y C  +N             L +          P      P  +   
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218

Query: 68  LDGSANFQCEIT--PYDSGPYLIAWFK-DGRQIPGRT----SSTSLVINPVGREDRGIYQ 120
              +   +C     P  +    I W + DG+ I  +     S+  L I    +ED G Y+
Sbjct: 219 KGTTVKLECFALGNPVPT----ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274

Query: 121 CIARRSDGDVAQGSAELQ 138
           C+A  S G       +L 
Sbjct: 275 CVAENSRGKNVA-KGQLT 291

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           +L   R ++    L I  V   D+G Y+C + N  G   +   L V
Sbjct: 336 LLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 46.8 bits (111), Expect = 6e-07
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 69  DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVGREDRGIYQC 121
           +      CE+    +    I W  +G  +             + L+ NP   +D G YQC
Sbjct: 23  EKKVKLSCEVKG--NPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 80

Query: 122 IARRSDGDVAQGSAELQLGGTRNIK 146
           IA  S G +    A+LQ     N K
Sbjct: 81  IATNSFGTIVSREAKLQFAYLENFK 105

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 97.6 bits (243), Expect = 4e-25
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
              +     P+L I+ V  ED GTY C + NI G  T + R+ +                
Sbjct: 248 QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEAD 307

Query: 68  LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG----RTSSTSLVINPVGREDRGIYQC 121
           +     + C  +  P  +    + W +DG+ +        S   L  + +  ED G+YQC
Sbjct: 308 IGSDLRWSCVASGKPRPA----VRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQC 363

Query: 122 IARRSDGDVAQGSAELQ 138
           +A    G V   SAEL 
Sbjct: 364 VAENKHGTV-YASAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 75.7 bits (186), Expect = 3e-17
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 12/142 (8%)

Query: 2   EPLLVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATA-EVRLQVSTPYRVDV 59
             L + P  R R++ G ++    V A+D+G+Y+C ++N  G   + E  L+         
Sbjct: 46  TELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSA 105

Query: 60  NPP-LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINP 110
                + +       F C   P         W  +                   +L I  
Sbjct: 106 EERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAK 164

Query: 111 VGREDRGIYQCIARRSDGDVAQ 132
               D G Y C A      + +
Sbjct: 165 TEASDLGNYSCFATSHIDFITK 186

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 68.3 bits (167), Expect = 1e-14
 Identities = 31/147 (21%), Positives = 40/147 (27%), Gaps = 22/147 (14%)

Query: 2   EPLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST------ 53
            P  +    R  V      L I    A D G Y C +++     T  V  + S       
Sbjct: 141 FPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200

Query: 54  ------PYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR--TSS 103
                 P      P             +C     P       I W K       +  +S 
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ----IKWRKLDGSQTSKWLSSE 256

Query: 104 TSLVINPVGREDRGIYQCIARRSDGDV 130
             L I  V  ED G Y+C A    G  
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRD 283

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 49.1 bits (117), Expect = 7e-08
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 9/85 (10%)

Query: 69  DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVGREDRGIYQC 121
           +      C      + P    W  +G ++     S         ++ NPV  +D G YQC
Sbjct: 22  EEKVTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79

Query: 122 IARRSDGDVAQGSAELQLGGTRNIK 146
           +A  + G V    A L+ G  +   
Sbjct: 80  VATNARGTVVSREASLRFGFLQEFS 104

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/46 (32%), Positives = 19/46 (41%)

Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           +    R  V G  L    +  EDSG Y+C + N  G   A   L V
Sbjct: 335 LASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 96.1 bits (239), Expect = 2e-24
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 5   LVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL 63
           + L   +  +L G  L I  VT +DSGTY C  +      +A   L V  P     +P  
Sbjct: 262 IQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSN 321

Query: 64  LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GR---TSSTSLVINPVGREDR 116
           L  +      F+C ++  P       + W K+G  +           ++L I  V + D 
Sbjct: 322 LYAYESMDIEFECAVSGKP----VPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDE 377

Query: 117 GIYQCIARRSDGDVAQGSAELQ 138
           G YQC+A  ++   AQ SA+L 
Sbjct: 378 GFYQCVA-ENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 80.3 bits (198), Expect = 9e-19
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 2   EPLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATA-EVRLQVSTPYRVD 58
           + L  +PG    V+ P   L I  +   DSG YRCS+ N     T  E  +++ +   + 
Sbjct: 160 QDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH 219

Query: 59  VNPPL------LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR------TSST 104
                      +       A  +C ++  P    P    W +    I  R         +
Sbjct: 220 RQLYFLQRPSNVIAIEGKDAVLECCVSGYP----PPSFTWLRGEEVIQLRSKKYSLLGGS 275

Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +L+I+ V  +D G Y C+    + ++   SAEL 
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNENI-SASAELT 308

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 76.0 bits (187), Expect = 3e-17
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 16/132 (12%)

Query: 19  LAIEGVTAEDSGTYRC--SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQC 76
           +        D G Y+C  S  + G   +   ++ V+ P R       ++  +  +   +C
Sbjct: 84  ILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKC 143

Query: 77  EIT--PYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIARRS 126
           E+   P  +    I W K+ + +      +        +L I+ +   D G+Y+C AR  
Sbjct: 144 EVIGDPMPT----IHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNP 199

Query: 127 DGDVAQGSAELQ 138
                   AE++
Sbjct: 200 ASTRTGNEAEVR 211

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 14/123 (11%)

Query: 37  SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQ 96
            +    +                 P        G+    C        P  I W KDG  
Sbjct: 4   GSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPV-IKWKKDGLI 62

Query: 97  IPGRTSS------------TSLVINPVGREDRGIYQCIAR-RSDGDVAQGSAELQLGGTR 143
           +                   +++ +   + D G+YQC A     G +   +A++ + G  
Sbjct: 63  LALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPL 122

Query: 144 NIK 146
              
Sbjct: 123 RFL 125

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 6   VLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           V+P    +++ G  L I GV   D G Y+C + N  G A +  +L V  P
Sbjct: 353 VIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 90.6 bits (225), Expect = 6e-24
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           L+++ V   D+G Y C   + G    +  V L V       V P  L+V  +      CE
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121

Query: 78  IT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 135
               P    P  I W++   +I G   S   V+N  G     ++ C A    G  +  +A
Sbjct: 122 AVGPP---EPVTIVWWRGTTKIGGPAPSP-SVLNVTGVTQSTMFSCEAHNLKGLASSRTA 177

Query: 136 ELQL 139
            + L
Sbjct: 178 TVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 18/92 (19%), Positives = 23/92 (25%), Gaps = 20/92 (21%)

Query: 61  PPLLSVHLDGSANFQCEI----TPYDSGPYLIAWFKDGRQIP----------GRTSSTSL 106
           P  L+V         C +     P       I W KDG  +            +     L
Sbjct: 9   PVKLTVSQGQPVKLNCSVEGMEEP------DIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62

Query: 107 VINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            +  V R D G Y C               L 
Sbjct: 63  SLKSVERSDAGRYWCQVEDGGETEISQPVWLT 94

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 90.2 bits (224), Expect = 1e-23
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 14/144 (9%)

Query: 5   LVLPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNP 61
           + L   R  +   G +L I  V   D G Y C+++N  G A  +   LQV    ++   P
Sbjct: 48  IKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP 107

Query: 62  PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GR---TSSTSLVINPVGRE 114
             + +     A   C     P       ++W K    +    R     S SL I+ V +E
Sbjct: 108 INVKIIEGLKAVLPCTTMGNP----KPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE 163

Query: 115 DRGIYQCIARRSDGDVAQGSAELQ 138
           D G Y+C+A+ S G       +L+
Sbjct: 164 DAGQYRCVAKNSLGTAYSKLVKLE 187

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 13/85 (15%)

Query: 64  LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT-------SSTSLVINPVGRE 114
           +   ++  A F C +   P       I+W ++   I           +   L I  V   
Sbjct: 17  VDALVEEVATFMCAVESYP----QPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDS 72

Query: 115 DRGIYQCIARRSDGDVAQGSAELQL 139
           D GIY C A    G   +    LQ+
Sbjct: 73  DDGIYCCTANNGVGGAVESCGALQV 97

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 91.5 bits (227), Expect = 2e-23
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 8/143 (5%)

Query: 3   PLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
           P+           G  L     T +++GTYRC+        +  + L V  P        
Sbjct: 37  PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLA 96

Query: 63  L-LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------TSSTSLVINPVGRED 115
             ++V     A   C IT        ++  ++G +   R      +     +I      D
Sbjct: 97  QEVTVVEGQEAVLPCLITDPALKD-SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLD 155

Query: 116 RGIYQCIARRSDGDVAQGSAELQ 138
              Y C    +  +       L+
Sbjct: 156 SNTYVCKTMVNGRESTSTGIWLK 178

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 75.0 bits (184), Expect = 3e-17
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 19  LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVST----PYRVDVNPPLLSVHLDGSAN 73
             I      DS TY C    N     +  + L+V+     P ++ + P  L      +A 
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ 205

Query: 74  FQCEITPYDSGPYLIAWFKDGRQIPGRTSST----------SLVINPVGREDRGIYQCIA 123
             C  T  +   + +   +   ++    +S           +L +N V  +D GIY C+A
Sbjct: 206 IVCSATNAEV-GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVA 264

Query: 124 RRSDGDVAQGSAELQ 138
               G     +   Q
Sbjct: 265 SNDVG-TRTATMNFQ 278

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
            L++  V  +D+G Y C +SN  G  TA +  QV
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 90.4 bits (224), Expect = 4e-23
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 16  GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR--VDVNPPLLSVHLDGSAN 73
              L I       +GTY CS        +A + + V   +   V        +       
Sbjct: 130 NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVT 189

Query: 74  FQCEITPYDSGPYLI---AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
             CE       P L    +++   + + GR +S+   I    RED G+Y C A   DG+V
Sbjct: 190 LSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249

Query: 131 AQGSAELQL 139
            + S EL+L
Sbjct: 250 LKRSPELEL 258

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 78.8 bits (194), Expect = 1e-18
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 4/120 (3%)

Query: 9   GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
           G  T+   P   I   +  DSG YRC         +  ++L++   + + +         
Sbjct: 40  GTATQTSTPSYRITSASVNDSGEYRCQRGL--SGRSDPIQLEIHRGW-LLLQVSSRVFTE 96

Query: 69  DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 128
                 +C     D   Y + ++++G+       +++L I        G Y C       
Sbjct: 97  GEPLALRCHA-WKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR 155

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 55.3 bits (133), Expect = 4e-10
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 57  VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR 116
           + + PP +SV  + +    CE+     G     WF +G      TS+ S  I      D 
Sbjct: 4   ITLQPPWVSVFQEETVTLHCEVLH-LPGSSSTQWFLNGTATQ--TSTPSYRITSASVNDS 60

Query: 117 GIYQCIARRSDG 128
           G Y+C    S  
Sbjct: 61  GEYRCQRGLSGR 72

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 10  PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGG---EATAEVRLQV 51
            R R       I     EDSG Y C ++   G   + + E+ LQV
Sbjct: 216 LRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 92.4 bits (229), Expect = 7e-23
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 18/146 (12%)

Query: 9   GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP---PLLS 65
           G         L I      DSG + C ++N  G A     L+V     +++ P     + 
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324

Query: 66  VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-------------TSSTSLVINPVG 112
           V+   + +   E   +   P    W    R    +                + L +  + 
Sbjct: 325 VNDGENVDLIVEYEAFPK-PEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
             + G Y  +   SD   A  +  + 
Sbjct: 384 GTEGGTYTFLVSNSDV-NAAIAFNVY 408

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 75.1 bits (184), Expect = 7e-17
 Identities = 12/107 (11%), Positives = 24/107 (22%), Gaps = 10/107 (9%)

Query: 26  AEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPY 81
           A  +  + C          G +   V     +P  +      L V +       C    +
Sbjct: 4   ARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF 63

Query: 82  DSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 128
                 + W  +             +       + G Y C  +    
Sbjct: 64  ------VKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLS 104

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 64.7 bits (157), Expect = 3e-13
 Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 21/139 (15%)

Query: 19  LAIEGVT-AEDSGTYRCSSSNIGGE-ATAEVRLQV----STPYRVDVNPPLLSVHLDGSA 72
           + I+ V  A       CS    G    + +  L+V         V V+     +      
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEF 229

Query: 73  NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS-------------LVINPVGREDRGIY 119
              C I    S      W ++  Q   +    S             L I+     D G++
Sbjct: 230 TVTCTIKDVSS-SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF 288

Query: 120 QCIARRSDGDVAQGSAELQ 138
            C A  + G  A  +  L+
Sbjct: 289 MCYANNTFG-SANVTTTLE 306

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 64.7 bits (157), Expect = 4e-13
 Identities = 21/128 (16%), Positives = 33/128 (25%), Gaps = 32/128 (25%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L +  +   + GTY    SN    A     + V+T       P +L+     +   QC  
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK------PEILTYDRLVNGMLQCVA 430

Query: 79  T--PYDSGPYLIAWFKDG--------------------RQIPGRTSSTSLVINPVGREDR 116
              P       I W+                          P         I+    +  
Sbjct: 431 AGFP----EPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHN 486

Query: 117 GIYQCIAR 124
           G  +C A 
Sbjct: 487 GTVECKAY 494

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.9 bits (155), Expect = 6e-13
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 14/129 (10%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
               E   A ++G Y C++ +     +  + + V  P ++ +    L    D     +C 
Sbjct: 81  EWITEKAEATNTGKYTCTNKH---GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCP 137

Query: 78  ITPYDSGPYLIAWFK--DGRQIPGRT------SSTSLVINPVGREDRGIYQCIARRSDGD 129
           +T            K   G+ +P          +  ++ +      R    C   +    
Sbjct: 138 LT---DPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194

Query: 130 VAQGSAELQ 138
           V      L+
Sbjct: 195 VLSEKFILK 203

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
            +I+    + +GT  C + N  G+ +A          +  ++P
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 90.6 bits (225), Expect = 1e-22
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I+ V   DSG Y C +++  G     + L +    +   N  +         N  C++
Sbjct: 65  LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDG 128
              +     I W +D   +P + +             L I P    D G Y C A  +  
Sbjct: 125 K-SNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA-TNHI 181

Query: 129 DVAQGSAELQ 138
                   L 
Sbjct: 182 GTRFQEYILA 191

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 43.3 bits (102), Expect = 9e-06
 Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 18/94 (19%)

Query: 59  VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP---------GRTS------S 103
           +     + + +G     C+          I W +               GR        S
Sbjct: 5   IQLKNETTYENGQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS 62

Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
           +SL I  V   D G Y C A    G   Q S  L
Sbjct: 63  SSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYL 95

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           IL I   +  D G Y C+++N  G    E  L +
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 87.3 bits (216), Expect = 2e-22
 Identities = 38/146 (26%), Positives = 51/146 (34%), Gaps = 19/146 (13%)

Query: 10  PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAE--VRLQVSTPYRVDVNPPLLSVH 67
            R   L   +  + VT ED+GTY C  S  GG +  E  V+L V  P          S  
Sbjct: 61  DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120

Query: 68  LDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---------------RTSSTSLVINPVG 112
           +   A   C             WFKDG  +P                  ++  LV +P+ 
Sbjct: 121 IGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
             D G Y C AR   G     S  ++
Sbjct: 180 ASDTGEYSCEARNGYGT-PMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 42.6 bits (100), Expect = 9e-06
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           L  + ++A D+G Y C + N  G       +++
Sbjct: 173 LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 90.3 bits (224), Expect = 2e-22
 Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 16/143 (11%)

Query: 7   LPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLL 64
           LP  + +       L I  V+ EDSG Y C +SN  G     + ++V         P  L
Sbjct: 263 LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNL 322

Query: 65  SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSST-------SLVINPVGRED 115
            +         C     P       + W  +G  +     +        +++        
Sbjct: 323 ILAPGEDGRLVCRANGNP----KPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISS 378

Query: 116 RGIYQCIARRSDGDVAQGSAELQ 138
           R +YQC      G +   +A + 
Sbjct: 379 RAVYQCNTSNEHGYL-LANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 73.4 bits (180), Expect = 3e-16
 Identities = 34/153 (22%), Positives = 46/153 (30%), Gaps = 16/153 (10%)

Query: 2   EPLLVLPGPRTRVLGP------ILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST- 53
               +   PR  +              G   E  G Y+C + N  G A +  +RLQVS  
Sbjct: 56  RFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115

Query: 54  PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP---GRTSST---SLV 107
           P     N   + V        QC   P      +I W     +      R S      L 
Sbjct: 116 PLWPKENLDPVVVQEGAPLTLQCNP-PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174

Query: 108 INPVGRED-RGIYQCIARRSDGDVAQGSAELQL 139
            + V  +D +  Y C AR       Q      L
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTL 207

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 19  LAIEGVTAEDS-GTYRCSSSNIGGEAT---AEVRLQVSTPYRVDVNPPLL---------- 64
           L    V  +D    Y C++               L+V T   V    P            
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232

Query: 65  SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-----RTSSTSLVINPVGREDRGIY 119
            V        +C  +   + P  IAW+K G  +P         + +L I  V  ED G Y
Sbjct: 233 MVLRGMDLLLECIASGVPT-PD-IAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEY 290

Query: 120 QCIARRSDGDVAQGSAELQ 138
            C+A    G +   +  ++
Sbjct: 291 FCLASNKMGSIRH-TISVR 308

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 15/115 (13%)

Query: 45  AEVRLQVSTPYRVDVNPPL-LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---- 99
             ++ +++ P  +         V    +   +CE     +      W ++ R        
Sbjct: 7   PSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKG--NPAPSFHWTRNSRFFNIAKDP 64

Query: 100 ----RTSSTSLVINPV----GREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK 146
               R  S +LVI+        E  G YQC AR   G        LQ+  +    
Sbjct: 65  RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP 119

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           P P   V G  +            Y+C++SN  G   A   + V
Sbjct: 358 PNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 88.6 bits (220), Expect = 3e-22
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 15/129 (11%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L +  ++ EDSG Y C + N  G A++   L+V  P      P  +        + +CE+
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL 216

Query: 79  T--PYDSGPYLIAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQCIARRSDG 128
              P    P+ ++W KD R++    +         TS+ I  V   D G YQC A  +D 
Sbjct: 217 QGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA-SNDV 271

Query: 129 DVAQGSAEL 137
                   +
Sbjct: 272 GSYTCVGSI 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 87.1 bits (216), Expect = 9e-22
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 20/148 (13%)

Query: 6   VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           + PG   ++        L +  VT  D+G Y C +SN+ G+ +   +L V  P R     
Sbjct: 46  IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL 105

Query: 62  P-LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--------GRTSSTSLVINP 110
                V  D    ++C+I   P       + W+KD  +I            S   L +  
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIK----VLWYKDETEIQESSKFRMSFVESVAVLEMYN 161

Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +  ED G Y C A  + G  A  S  L+
Sbjct: 162 LSVEDSGDYTCEAHNAAG-SASSSTSLK 188

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 15/95 (15%)

Query: 54  PYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG--------RTSS 103
           P   D+ P  + + L  S  F+C +T       P  I W KD R+I            ++
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTA----PIKITWAKDNREIRPGGNYKMTLVENT 60

Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            +L +  V + D G Y C A    G     SA+L 
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAG-KDSCSAQLG 94

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 6   VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           +  G + +++       + I  V + D G Y+C +SN  G  T    + +
Sbjct: 233 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 89.5 bits (222), Expect = 7e-22
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 20/148 (13%)

Query: 6   VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST-PYRVDVN 60
           + PG   ++        L +  VT  D+G Y C +SN+ G+ +   +L V   P  +   
Sbjct: 238 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL 297

Query: 61  PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--------GRTSSTSLVINP 110
            P   V  D    ++C+I   P       + W+KD  +I            S   L +  
Sbjct: 298 EPSRIVKQDEHTRYECKIGGSP----EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN 353

Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +  ED G Y C A  + G  A  S  L+
Sbjct: 354 LSVEDSGDYTCEAHNAAGS-ASSSTSLK 380

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 86.8 bits (215), Expect = 6e-21
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 16/145 (11%)

Query: 6   VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           +  G + +++       + I  V + D G Y+C +SN  G  T    + +  P R     
Sbjct: 425 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKL 484

Query: 62  PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVG 112
             +S  +      Q  I   +  P  +AWFKD  +I   +            +L  +   
Sbjct: 485 SDISTVVGEEVQLQATIEGAE--PISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAE 542

Query: 113 REDRGIYQCIARRSDGDVAQGSAEL 137
             + G Y C   +++    +  A L
Sbjct: 543 PANAGKYTCQI-KNEAGTQECFATL 566

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 86.4 bits (214), Expect = 9e-21
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 17/149 (11%)

Query: 2   EPLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV 59
             +      R   +    +L +  ++ EDSG Y C + N  G A++   L+V  P     
Sbjct: 330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK 389

Query: 60  NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GRTS------STSLVIN 109
            P  +        + +CE+   P    P+ ++W KD R++    +         TS+ I 
Sbjct: 390 KPHPVETLKGADVHLECELQGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHIL 445

Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            V   D G YQC A    G        + 
Sbjct: 446 NVDSADIGEYQCKASNDVG-SDTCVGSIT 473

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 83.7 bits (207), Expect = 7e-20
 Identities = 34/153 (22%), Positives = 51/153 (33%), Gaps = 16/153 (10%)

Query: 2   EPLLVLPGPRTRVLGPI--LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV---STPYR 56
             L   P  + +    +  L I  V   D G Y C + N  G   +   L +     P  
Sbjct: 44  TKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPS 103

Query: 57  VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVI 108
                  +   L     F+C I   +  P  ++W+KDG  +    +          +L I
Sbjct: 104 FARKLKDVHETLGFPVAFECRINGSE--PLQVSWYKDGELLKDDANLQTSFIHNVATLQI 161

Query: 109 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 141
               +   G Y C A    G  A  SA+L L  
Sbjct: 162 LQTDQSHVGQYNCSASNPLGT-ASSSAKLTLSE 193

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 76.8 bits (189), Expect = 2e-17
 Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 18/151 (11%)

Query: 2   EPLLVLPGPRTRVLGPI--LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---TPYR 56
           E L      +T  +  +  L I        G Y CS+SN  G A++  +L +S    P  
Sbjct: 140 ELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF 199

Query: 57  VDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGR--------TSSTSLV 107
            D+ P  + + L  S  F+C +T       + I W KD R+I            ++ +L 
Sbjct: 200 FDLKPVSVDLALGESGTFKCHVTGT---APIKITWAKDNREIRPGGNYKMTLVENTATLT 256

Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +  V + D G Y C A    G     SA+L 
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGK-DSCSAQLG 286

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 52.5 bits (126), Expect = 6e-09
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVG 112
              +   +      QC++         IAW+K+  ++    +          SLVIN V 
Sbjct: 12  LEHVEAAIGEPITLQCKVDGT--PEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVD 69

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQLGG 141
             D G Y C A  S G     SA L +  
Sbjct: 70  HSDVGEYTCKAENSVG-AVASSAVLVIKE 97

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 8/33 (24%), Positives = 10/33 (30%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           L        ++G Y C   N  G       L V
Sbjct: 536 LQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 85.8 bits (212), Expect = 8e-22
 Identities = 35/149 (23%), Positives = 48/149 (32%), Gaps = 20/149 (13%)

Query: 9   GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAE--VRLQVSTPYRVDVNPPLLSV 66
             R       +    VT +D+G Y C  S  GG+   E  + L V  P          SV
Sbjct: 57  ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSV 116

Query: 67  HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----------------STSLVINP 110
            +   A   C            +WFKDG  +    +                S  L+ +P
Sbjct: 117 TIGNRAVLTCSEHDGSPPSE-YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175

Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQL 139
           V   D G Y C A+   G  A  S    +
Sbjct: 176 VTAFDSGEYYCQAQNGYGT-AMRSEAAHM 203

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L  + VTA DSG Y C + N  G A       +   
Sbjct: 171 LIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 85.2 bits (211), Expect = 8e-22
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 2   EPLLVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVD 58
           E +  +   R  +L    L I  +   D G YRC             ++ + V+ P  + 
Sbjct: 41  EEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIS 100

Query: 59  VNPPL--LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPG------RTSSTSL 106
           +       +        F C  +    P       I+WF++G+ I        + S+T L
Sbjct: 101 MPQKSFNATAERGEEMTFSCRASGSPEP------AISWFRNGKLIEENEKYILKGSNTEL 154

Query: 107 VINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            +  +   D G Y C A    G   +  A LQ
Sbjct: 155 TVRNIINSDGGPYVCRATNKAG-EDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 13/82 (15%)

Query: 65  SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVGRED 115
                  A   C ++  P    P  ++W     ++   + +        +L I  + + D
Sbjct: 13  EFKQGEDAEVVCRVSSSPA---P-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSD 68

Query: 116 RGIYQCIARRSDGDVAQGSAEL 137
            GIY+C  R            +
Sbjct: 69  EGIYRCEGRVEARGEIDFRDII 90

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   VLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           +    +  + G    L +  +   D G Y C ++N  GE   +  LQV
Sbjct: 139 IEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 89.4 bits (221), Expect = 9e-22
 Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 11/138 (7%)

Query: 9   GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV---NPPLLS 65
           G   +     L I+GVT  D G Y C++S+          ++V     V        L+ 
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341

Query: 66  VHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGR---TSSTSLVINPVGREDRGIYQC 121
             +        +   Y   P   I W+K+G  +       +   L I  V   D G Y  
Sbjct: 342 ATVGERVRIPAKYLGY---PPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTV 398

Query: 122 IARRSDGDVAQGSAELQL 139
           I         Q S  + L
Sbjct: 399 ILTNPISKEKQ-SHVVSL 415

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 84.4 bits (208), Expect = 5e-20
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS----TPYRVDVNPPLLSVHLDGSAN 73
           I+ ++  + +D G Y C + +   +    V  Q++        +  N    +  +  S  
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIE 685

Query: 74  FQCEIT--PYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARR 125
             C  +  P    P  I WFKD   +        +  + +L I  V +ED G+Y C A  
Sbjct: 686 VSCTASGNP----PPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 741

Query: 126 SDGDVAQGSAELQ 138
             G  A+  A   
Sbjct: 742 VLG-CAKVEAFFI 753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 83.7 bits (206), Expect = 9e-20
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 10/123 (8%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRV-----DVNPPLLSVHLDGSA 72
            L I  V   D+G Y+C        +   V +Q      +           ++ + + + 
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146

Query: 73  NFQCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSD 127
              C  +  +    L A + + R +P        S     I        G+  C A+ +D
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND 206

Query: 128 GDV 130
              
Sbjct: 207 ESY 209

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.0 bits (181), Expect = 2e-16
 Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 32/150 (21%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           +  +    A  S  Y+C + N  G     +   V+    + + P +       S +  C 
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDM-QPTEQESVSLWCT 572

Query: 78  ITPYDSGPYLIAWFKDGRQI----------------------------PGRTSSTSLVIN 109
                     + W+K G Q                                     + + 
Sbjct: 573 ADRST--FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELK 630

Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQL 139
               +D+G Y C+A+       +     QL
Sbjct: 631 NASLQDQGDYVCLAQDRKTK-KRHCVVRQL 659

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 72.9 bits (178), Expect = 5e-16
 Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 21/140 (15%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR---VDVNPP-LLSVHLDGSANF 74
             I       +G   C +        + + + V   YR   V ++P   + + +      
Sbjct: 185 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 244

Query: 75  QCEITPYDSGPYLIAWFKDGRQIPG----------------RTSSTSLVINPVGREDRGI 118
            C      +      W     +                   +   ++L I+ V R D+G+
Sbjct: 245 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 304

Query: 119 YQCIARRSDGDVAQGSAELQ 138
           Y C A        + S  ++
Sbjct: 305 YTCAASSGLMT-KKNSTFVR 323

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 64.0 bits (155), Expect = 7e-13
 Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 16/117 (13%)

Query: 21  IEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITP 80
           ++         + C  +         V L      R+ +   +L++  + +    C    
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSL---DLPRLSIQKDILTIKANTTLQITCRGQR 57

Query: 81  YDSGPYLIAWFKDGRQIPGRTSST---------SLVINPVGREDRGIYQCIARRSDG 128
                    W  +      R   T         +L I  V   D G Y+C  R +D 
Sbjct: 58  ----DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 62.5 bits (151), Expect = 2e-12
 Identities = 26/170 (15%), Positives = 42/170 (24%), Gaps = 47/170 (27%)

Query: 7   LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTP---YRVDVNP 61
           L    T   G +L I  V+  D+G Y    +N   +   +  V L V  P       +  
Sbjct: 371 LESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLIS 430

Query: 62  PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS------------------ 103
           P+ S     +    C +      P+ I W+    +      S                  
Sbjct: 431 PVDSYQYGTTQTLTCTVYAIPP-PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVE 489

Query: 104 -----------------------TSLVINPVGREDRGIYQCIARRSDGDV 130
                                  T   +         +Y+C A    G  
Sbjct: 490 DFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L I  V  ED G Y C + ++ G A  E    +   
Sbjct: 722 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 84.9 bits (210), Expect = 1e-21
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 19  LAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           L I     +D+G Y+C  +   G ++ A V +++         P          A   C+
Sbjct: 64  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123

Query: 78  IT--PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDG 128
           +        P  I W   GR +  +         +  L I  + + D G Y+C  R    
Sbjct: 124 VVSSL----PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 129 DVAQGSAELQL 139
                  ++Q+
Sbjct: 180 GE-INFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRTS----------ST 104
           +VD+ P    + +  S  F C++         I+WF  +G ++               S+
Sbjct: 4   QVDIVPSQGEISVGESKFFLCQVAGDAKDKD-ISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +L I     +D GIY+C+    DG  ++ +  ++
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK 96

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 2   EPLLVLPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
             +++    R  VL    L I G+   D GTYRC    +         +QV
Sbjct: 139 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 86.9 bits (215), Expect = 1e-21
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 15/132 (11%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQC 76
            L I     +D+G Y+C  +   G    A V +++         P          A   C
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122

Query: 77  EIT--PYDSGPYLIAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSD 127
           ++        P  I W   GR +  +        S+  L I  + + D G Y+C  R   
Sbjct: 123 DVVSSL----PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA 178

Query: 128 GDVAQGSAELQL 139
                   ++Q+
Sbjct: 179 RG-EINFKDIQV 189

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 85.3 bits (211), Expect = 5e-21
 Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 22/154 (14%)

Query: 2   EPLLVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVD 58
             +++    R  VL    L I G+   D GTYRC    +        ++++ V+ P  V 
Sbjct: 139 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQ 198

Query: 59  VNPPLL--SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR----------TSST 104
               ++  + +L  S    C+    P       ++W KDG  I               S+
Sbjct: 199 ARQSIVNATANLGQSVTLVCDADGFP----EPTMSWTKDGEPIENEEEDDEKHIFSDDSS 254

Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            L I  V + D   Y CIA    G+    S  L+
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLK 287

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRTS----------ST 104
           +VD+ P    + +  S  F C++   D+    I+WF  +G ++               S+
Sbjct: 4   QVDIVPSQGEISVGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +L I     +D GIY+C+    DG  ++ +  ++
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK 96

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           L I  V   D   Y C + N  GE  A + L+V
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 84.8 bits (210), Expect = 2e-21
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 30/157 (19%)

Query: 2   EPLLVLPGPRTRVLGP----ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRV 57
           + +     P  ++        L I  VT  +SG Y   ++N  G+AT+   L V    + 
Sbjct: 44  QVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV----KA 99

Query: 58  DVNPPL-------LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GRTS---- 102
           +  PP        ++V        Q  +T  P      ++ +++DG +I           
Sbjct: 100 ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP----TPVVKFYRDGAEIQSSLDFQISQE 155

Query: 103 --STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
               SL+I     ED G Y   A  S G  A  +AEL
Sbjct: 156 GDLYSLLIAEAYPEDSGTYSVNATNSVG-RATSTAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 51.3 bits (123), Expect = 6e-09
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 17/90 (18%)

Query: 61  PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVI 108
              + V    +A F+  I+  P       ++WF+DG+ I   T              L I
Sbjct: 12  LQSVVVLEGSTATFEAHISGFP----VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTI 67

Query: 109 NPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
             V + + G Y   A    G  A  +AEL 
Sbjct: 68  PAVTKANSGRYSLKATNGSG-QATSTAELL 96

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 6   VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           +      ++        L I     EDSGTY  +++N  G AT+   L V
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 84.6 bits (209), Expect = 2e-21
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 7/124 (5%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           L I  +   D+G Y+C          ++   + +         P   +V  +   N  C+
Sbjct: 70  LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQ 129

Query: 78  IT--PYDSGPYLIAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 134
               P    P  + W +D   +           ++  G      + C A  + G     +
Sbjct: 130 AQGPP---EPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRT 186

Query: 135 AELQ 138
           A + 
Sbjct: 187 ATIT 190

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 18/97 (18%)

Query: 59  VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------- 102
            NP  ++     +   +C++      P  + W +DG+ +    S                
Sbjct: 7   GNPGNITGARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWI 65

Query: 103 -STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
             + L I  +   D G YQC+              + 
Sbjct: 66  VVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVG 102

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 86.0 bits (213), Expect = 3e-21
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 18/147 (12%)

Query: 5   LVLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDV 59
            ++   R  V        L I     ED+G YRC +++  G+   A V L++        
Sbjct: 44  KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE 103

Query: 60  NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP----GR---TSSTSLVINP 110
                       A   C ++  P       ++W     ++      R    ++ +L I  
Sbjct: 104 VVSPQEFKQGEDAEVVCRVSSSP----APAVSWLYHNEEVTTISDNRFAMLANNNLQILN 159

Query: 111 VGREDRGIYQCIARRSDGDVAQGSAEL 137
           + + D GIY+C  R            +
Sbjct: 160 INKSDEGIYRCEGRVEARGEIDFRDII 186

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 82.6 bits (204), Expect = 6e-20
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 2   EPLLVLPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVD 58
           E +  +   R  +L    L I  +   D G YRC             ++ + V+ P  + 
Sbjct: 137 EEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIS 196

Query: 59  VNPPL--LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPG------RTSSTSL 106
           +       +        F C  +    P       I+WF++G+ I        + S+T L
Sbjct: 197 MPQKSFNATAERGEEMTFSCRASGSPEP------AISWFRNGKLIEENEKYILKGSNTEL 250

Query: 107 VINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHY 148
            +  +   D G Y C A    G   +  A LQ+    +  H+
Sbjct: 251 TVRNIINSDGGPYVCRATNKAG-EDEKQAFLQVFVQHHHHHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 54  PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRT--------SST 104
             +V ++   + + +  S  F C        P  I W+   G +I              +
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAI---GEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60

Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            L I     ED GIY+C A  + G   + +  L+
Sbjct: 61  RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 87.0 bits (215), Expect = 3e-21
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
              RT +      +  V   D+G Y CSSS    + +A V +          +     + 
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKGFINATNSSEDYEID 339

Query: 68  LDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCI 122
                 F      Y   P +   W    +  P       +  S+      +   G Y   
Sbjct: 340 QYEEFCFSVRFKAY---PQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396

Query: 123 ARRSDGDVAQGSAELQL-GGTRNIKHYN 149
           A   D         L +  GT++  H++
Sbjct: 397 AENDDA-QFTKMFTLNIRSGTKHHHHHH 423

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 71.2 bits (174), Expect = 2e-15
 Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 13/117 (11%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           + I  +T   +G Y     +     T    + +       +  P     ++      C  
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRK-MENQDALVCIS 163

Query: 79  TPYDSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSDG 128
                   ++ W     Q                 V++ +   D    +C AR   G
Sbjct: 164 ESV--PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELG 215

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 68.9 bits (168), Expect = 1e-14
 Identities = 18/146 (12%), Positives = 36/146 (24%), Gaps = 20/146 (13%)

Query: 2   EPLLVLPGPRTRVLGPI-LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN 60
                       V+      +  +   D    RC + N  G     +             
Sbjct: 178 SQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQ-TPQTT 233

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------------GRTSSTSL 106
            P L + +      +C+    + G   + W  + + +                       
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292

Query: 107 VINPVGREDRGIYQCIARRSDGDVAQ 132
            ++ V R D G Y C + +     A 
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQSAL 318

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 63.9 bits (155), Expect = 6e-13
 Identities = 14/116 (12%), Positives = 27/116 (23%), Gaps = 13/116 (11%)

Query: 20  AIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT 79
                +   S +Y   S +          L+  +          + V +  S   Q  + 
Sbjct: 18  KNNDSSVGKSSSYPMVSESPED---LGCALRPQSS-GTVYEAAAVEVDVSASITLQVLVD 73

Query: 80  PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDG 128
               G     W      +  +           S+VI  +     G Y    +    
Sbjct: 74  AP--GNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT 127

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 87.7 bits (217), Expect = 3e-21
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 12/147 (8%)

Query: 3   PLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGG---EATAEVRLQVSTPYRVDV 59
           P     G         L I+ +   D+G Y            EAT + R+    P     
Sbjct: 57  PGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSIS 116

Query: 60  NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGR 113
           +     V    +  F CE     +      W+ + + +P          + +L +  V R
Sbjct: 117 SNNSKPVEDKDAVAFTCEPE---TQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTR 173

Query: 114 EDRGIYQCIARRSDGDVAQGSAELQLG 140
            D   Y+C  +         S  L + 
Sbjct: 174 NDTASYKCETQNPVSARRSDSVILNVL 200

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 84.2 bits (208), Expect = 6e-20
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 12/139 (8%)

Query: 6   VLPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQV-STPYRVDVNP 61
           +   PR ++      L +  VT  D G Y C   N +  + +  V L V   P    ++P
Sbjct: 329 LPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISP 388

Query: 62  PLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
                    + +  C      S P    +W  DG        +  L I+ +  ++ G+Y 
Sbjct: 389 SYTYYRPGVNLSLSCHAA---SNPPAQYSWLIDGNIQQ---HTQELFISNITEKNSGLYT 442

Query: 121 CIARRSDGDVAQGSAELQL 139
           C A  S       +    +
Sbjct: 443 CQANNSASGH-SRTTVKTI 460

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 83.5 bits (206), Expect = 9e-20
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 13/133 (9%)

Query: 16  GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRV----DVNPPLLSVHLDGS 71
              L I  +T ++SG Y C ++N     +      ++    +      +     V    +
Sbjct: 425 TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDA 484

Query: 72  ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST------SLVINPVGREDRGIYQCIARR 125
             F CE    ++      W+ +G+ +P            +L +  V R D   Y C  + 
Sbjct: 485 VAFTCEP---EAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQN 541

Query: 126 SDGDVAQGSAELQ 138
           S          L 
Sbjct: 542 SVSANRSDPVTLD 554

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 82.7 bits (204), Expect = 2e-19
 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 12/139 (8%)

Query: 6   VLPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVST-PYRVDVNP 61
           +   PR ++      L +  VT  D+  Y C   N +    +  V L V   P    ++P
Sbjct: 507 LPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISP 566

Query: 62  PLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
           P  S     + N  C      S P    +W  +G        +  L I  +   + G Y 
Sbjct: 567 PDSSYLSGANLNLSCHS---ASNPSPQYSWRINGIPQ---QHTQVLFIAKITPNNNGTYA 620

Query: 121 CIARRSDGDVAQGSAELQL 139
           C    +       S    +
Sbjct: 621 CFV-SNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 82.7 bits (204), Expect = 2e-19
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 8/140 (5%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVS-TPYRVDV 59
           + L V P  +       L +  VT  D+ +Y+C + N         V L V   P    +
Sbjct: 149 QSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTI 208

Query: 60  NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIY 119
           +P   S     + N  C        P   +WF +G       S+  L I  +   + G Y
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNP--PAQYSWFVNGTFQQ---STQELFIPNITVNNSGSY 263

Query: 120 QCIARRSDGDVAQGSAELQL 139
            C A  SD      +    +
Sbjct: 264 TCQAHNSDTG-LNRTTVTTI 282

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 76.5 bits (188), Expect = 2e-17
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 13/133 (9%)

Query: 16  GPILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVST-PYRVDVNPPLLSVHLDG-S 71
              L I  +T  +SG+Y C + N       T    + V   P +  +     +   D  +
Sbjct: 247 TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDA 306

Query: 72  ANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARR 125
               CE    +       W+ + + +P          + +L +  V R D G Y+C  + 
Sbjct: 307 VALTCE---PEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQN 363

Query: 126 SDGDVAQGSAELQ 138
                      L 
Sbjct: 364 ELSVDHSDPVILN 376

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 26/108 (24%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR--------------- 100
           ++ +     +V             P     +  +W+K  R    R               
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQH--LFGYSWYKGERVDGNRQIIGYVIGTQQATPG 58

Query: 101 ---------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
                      + SL+I  + + D G Y     +SD    + + + ++
Sbjct: 59  PAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRV 106

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 16  GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
             +L I  +T  ++GTY C  SN+       +   ++  
Sbjct: 603 TQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 84.1 bits (208), Expect = 4e-21
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 18  ILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL-------LSVHLD 69
           +L I+ + T  D   Y C +SN  GE +   RL V    ++    P          V   
Sbjct: 64  VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123

Query: 70  GSANFQCEIT--PYDSGPYLIAWFKDGRQIP-----------GRTSSTSLVINPVGREDR 116
            +A   C  +  P    P  I WFKD   +               S  +L I      D+
Sbjct: 124 RTATMLCAASGNPD---P-EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179

Query: 117 GIYQCIARRSDGDVAQGSAELQLGGTRNIKHY 148
           G Y+C+A  S G      A L + GT++  H+
Sbjct: 180 GKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 48.7 bits (116), Expect = 8e-08
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 17/87 (19%)

Query: 64  LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT---------SSTSLVINPVG 112
            +    G A+F C+ T  P    P  I W K G+++  +          S + L I P+ 
Sbjct: 16  QTGVSGGVASFICQATGDPR---PK-IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR 71

Query: 113 R-EDRGIYQCIARRSDGDVAQGSAELQ 138
              D  IY+C+A  + G     S  L 
Sbjct: 72  TPRDEAIYECVASNNVG-EISVSTRLT 97

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 85.0 bits (210), Expect = 7e-21
 Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP-LLSVHLDGSANFQC 76
           IL+    T +++GTYRC+        +A + L V  P R        + V  D  A   C
Sbjct: 52  ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPC 111

Query: 77  EITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDGDVA 131
            +T       +      GR +   T           I+         YQC A      V 
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVM 171

Query: 132 QGSAELQ 138
             S  L+
Sbjct: 172 SISIRLK 178

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 71.9 bits (176), Expect = 5e-16
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 17/135 (12%)

Query: 19  LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVST----PYRVDVNPPLLSVHLDGSAN 73
             I       S  Y+CS         +  +RL+V      P  + + P  L      +A 
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ 205

Query: 74  FQCEITPYDSGPYLIAWFKDGRQIPGRTSST----------SLVINPVGREDRGIYQCIA 123
             C  +  D   + +    +  ++     S           +L ++ V  +  G Y C+A
Sbjct: 206 IVCSASSVDV-NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVA 264

Query: 124 RRSDGDVAQGSAELQ 138
               G     S   +
Sbjct: 265 SNVQG-KHSTSMFFR 278

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
            L ++ V  + +G Y C +SN+ G+ +  +  +V
Sbjct: 246 TLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 9/78 (11%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT---SSTSLVINPVG 112
            ++ + P L V    +   +C      +G   + W              SS+ L  N   
Sbjct: 6   VIEPSVPELVVKPGATVTLRCVG----NGS--VEWDGPPSPHWTLYSDGSSSILSTNNAT 59

Query: 113 REDRGIYQCIARRSDGDV 130
            ++ G Y+C         
Sbjct: 60  FQNTGTYRCTEPGDPLGG 77

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 84.8 bits (210), Expect = 1e-20
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 19/135 (14%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL-----LSVHLDGSAN 73
           L I  VT +D+  Y+  ++N GG  +    L+V  P ++ +   L     +        +
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 74  FQCEITPYDSGPYL-IAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIA 123
            +   +     P   I W K    I           R+ ++ +  N V R+D G Y   A
Sbjct: 124 IKIPFS---GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 124 RRSDGDVAQGSAELQ 138
            ++   + Q + EL 
Sbjct: 181 -KNRFGIDQKTVELD 194

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG----------RTSSTS 105
                   L+V    +A   C++T       ++ W++ G++I            +     
Sbjct: 6   HFKEELRNLNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           L+I  V  +D  +YQ  A    G    G+A L+
Sbjct: 64  LIIASVTDDDATVYQVRATNQGG-SVSGTASLE 95

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           ++   GV  +D+G Y   + N  G     V L V+  
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 84.9 bits (210), Expect = 1e-20
 Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 22/142 (15%)

Query: 16  GPILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP-------LLSVH 67
           G +L I+ + T  D   Y C + N  GE T   +L V    ++    P       L  V 
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121

Query: 68  LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRG 117
              +A   C  +  P       I WFKD   +    S        S +L I      D+G
Sbjct: 122 RTRTATMLCAASGNPDPE----ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177

Query: 118 IYQCIARRSDGDVAQGSAELQL 139
            Y+C+A  S G      A L +
Sbjct: 178 KYECVATNSAGVRYSSPANLYV 199

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 83.7 bits (207), Expect = 2e-20
 Identities = 32/140 (22%), Positives = 48/140 (34%), Gaps = 20/140 (14%)

Query: 10  PRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGE-----ATAEVRLQVSTPYRVDVNPPL 63
            R + L    L IE     D G Y C ++N  G      A   VR+Q   P R  + P  
Sbjct: 156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAP-RFSILPMS 214

Query: 64  LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP--GRTSSTSLVINPVGREDRG 117
             +   G+ N  C       PY      + W +    +           V+     +D  
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPY------VKWMQGAEDLTPEDDMPVGRNVLELTDVKDSA 268

Query: 118 IYQCIARRSDGDVAQGSAEL 137
            Y C+A  S   V +  A++
Sbjct: 269 NYTCVA-MSSLGVIEAVAQI 287

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 17/100 (17%)

Query: 51  VSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG--------- 99
              P R    P        G A+F C+ T  P       + W K G+++           
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDP----KPRVTWNKKGKKVNSQRFETIEFD 58

Query: 100 RTSSTSLVINPVGR-EDRGIYQCIARRSDGDVAQGSAELQ 138
            ++   L I P+    D  +Y+C+A+ S G      A+L 
Sbjct: 59  ESAGAVLRIQPLRTPRDENVYECVAQNSVG-EITVHAKLT 97

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 8/43 (18%), Positives = 16/43 (37%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
             +E    +DS  Y C + +  G   A  ++ V +  +     
Sbjct: 257 NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 85.3 bits (211), Expect = 1e-20
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 11  RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPP-LLSVHL 68
             R  G  L  +    ED G Y C   N  G+     ++L V +  + +  P  ++ V  
Sbjct: 264 HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQ 323

Query: 69  DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVGREDRGIYQCIA 123
                  C++T  P  +    + W  + + + G     + + LVI  V   D+G Y C A
Sbjct: 324 GQDVTIPCKVTGLPAPN----VVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRA 379

Query: 124 RRSDGDVAQGSAELQ 138
               GD       +Q
Sbjct: 380 TNEHGDK-YFETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 72.3 bits (177), Expect = 6e-16
 Identities = 24/137 (17%), Positives = 38/137 (27%), Gaps = 17/137 (12%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           L      A D G Y+C +    G A+   +  + +            +          C 
Sbjct: 64  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123

Query: 78  ITPYDSGPYLIAWFKDGRQIPGRTSST------------SLVINPVGREDR---GIYQCI 122
           +      P LI W K           T            +L    V +ED      Y C 
Sbjct: 124 LPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182

Query: 123 ARRSDGDVAQGSAELQL 139
           A+ +  D      E ++
Sbjct: 183 AKNAAVDEEVVLVEYEI 199

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 66.1 bits (161), Expect = 1e-13
 Identities = 22/146 (15%), Positives = 36/146 (24%), Gaps = 31/146 (21%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEA-----------TAEVRLQVSTPYRVDVNPPLLSV 66
              +      D   Y C++ N   +              +                 +  
Sbjct: 165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMA 224

Query: 67  HLDGSANFQCEI----TPYDSGPYLIAWFKDGRQIPG----------RTSSTSLVINPVG 112
                    C        Y        +FK+G+ + G          RTS   L+     
Sbjct: 225 KAGDVTMIYCMYGSNPMGY------PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 278

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
            ED G+Y C      G   + S +L 
Sbjct: 279 PEDEGVYTCEVDNGVGKPQKHSLKLT 304

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 61.1 bits (148), Expect = 5e-12
 Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 8/105 (7%)

Query: 49  LQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-------RT 101
           L V     +   P  +    +     +C I   D      +W KDG+           R 
Sbjct: 1   LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQ-GVKYSWKKDGKSYNWQEHNAALRK 59

Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK 146
              SLV       D G YQC A    G  +      +        
Sbjct: 60  DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASP 104

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 7   LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
           L G R  V    L I+GV   D G Y C ++N  G+   E  +QV+
Sbjct: 350 LSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 82.1 bits (203), Expect = 2e-20
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 21/135 (15%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV-----NPPLLSVHLDGSAN 73
           L I  VT +D+  Y+  ++N GG  +    L+V  P ++ +         +        +
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 74  FQCEIT--PYDSGPYLIAWFKDGRQI---------PGRTSSTSLVINPVGREDRGIYQCI 122
            +   +  P    P +I W K    I           R+ ++ +  N V R+D G Y   
Sbjct: 124 IKIPFSGKPD---P-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179

Query: 123 ARRSDGDVAQGSAEL 137
           A+   G + Q + EL
Sbjct: 180 AKNRFG-IDQKTVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 17/87 (19%)

Query: 64  LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPV 111
           L+V    +A   C++T  P    P ++ W++ G++I            +     L+I  V
Sbjct: 14  LNVRYQSNATLVCKVTGHPK---P-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69

Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQ 138
             +D  +YQ  A    G    G+A L+
Sbjct: 70  TDDDATVYQVRATNQGG-SVSGTASLE 95

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 5   LVLPGPRTRV-----LGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           L+      +V        ++   GV  +D+G Y   + N  G     V L V
Sbjct: 144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 83.9 bits (207), Expect = 2e-20
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 26/143 (18%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD------------------VN 60
           + +E +  ED GTY     +      + V L      ++                   V 
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 227

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGRE 114
                V  + +   +C++       + I W+KD R+I        +    +L+I    ++
Sbjct: 228 YLSWEVTGECNVLLKCKVANIKKETH-IVWYKDEREISVDEKHDFKDGICTLLITEFSKK 286

Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
           D GIY+ I +   G   +   +L
Sbjct: 287 DAGIYEVILKDDRGK-DKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 15/142 (10%), Positives = 41/142 (28%), Gaps = 24/142 (16%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL------------LS 65
            +  + +  +D G Y C  ++  G A++ +  +      + ++               + 
Sbjct: 59  KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118

Query: 66  VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGRED 115
           +   G   F  +          + +  + ++I             T    + +  +  ED
Sbjct: 119 ILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177

Query: 116 RGIYQCIARRSDGDVAQGSAEL 137
            G Y    +         +  L
Sbjct: 178 EGTYTFQLQDGKA-TNHSTVVL 198

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 61  PPLLSVHLDG--SANFQCEITPYDSGPYL-IAWFKDGRQIPGRT--------SSTSLVIN 109
             +++V  DG  S NF+C+       P    +W KD                + T +   
Sbjct: 8   EVVVNVDDDGVISLNFECDK----MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFK 63

Query: 110 PVGREDRGIYQCIARRSDGDVA 131
            +G +D GIY C    +DG  +
Sbjct: 64  DLGMDDLGIYSCDVTDTDGIAS 85

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 6   VLPGPRTRVLGPI--LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           +    +      I  L I   + +D+G Y     +  G+  + ++L  
Sbjct: 263 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 81.9 bits (202), Expect = 3e-20
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 23/150 (15%)

Query: 16  GPILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQV---------------STPYRVDV 59
              L    V  +D+G Y C  +N      +   +L V                +  ++ V
Sbjct: 64  TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICV 123

Query: 60  NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRG 117
            P    +    +   QC     P         WFK+   +   T     ++  V  E +G
Sbjct: 124 EPTSQKLMPGSTLVLQCVAVGSP----IPHYQWFKNELPLTHETKKL-YMVPYVDLEHQG 178

Query: 118 IYQCIARRSDGDVAQGSAELQLGGTRNIKH 147
            Y C              E+ +    N+ H
Sbjct: 179 TYWCHVYNDRDSQDSKKVEIIIDELNNLGH 208

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 63.4 bits (154), Expect = 3e-13
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 41  GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPG 99
                     V    ++ VNP   +V         C  T     P++   WFK  ++IP 
Sbjct: 5   HHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRAT---GHPFVQYQWFKMNKEIPN 61

Query: 100 RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
             +S  L+ N V  +D G Y C    +        ++L 
Sbjct: 62  GNTSE-LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD 99

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 83.6 bits (206), Expect = 8e-20
 Identities = 23/135 (17%), Positives = 36/135 (26%), Gaps = 10/135 (7%)

Query: 9   GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
             RT +      +  V   D+G Y CSSS    + +A V +          +     +  
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKGFINATNSSEDYEIDQ 340

Query: 69  DGSANFQCEITPYDSGPYL-IAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIA 123
                F      Y   P +   W    +  P       +  S+      +   G Y   A
Sbjct: 341 YEEFCFSVRFKAY---PQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHA 397

Query: 124 RRSDGDVAQGSAELQ 138
              D         L 
Sbjct: 398 ENDDA-QFTKMFTLN 411

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 70.1 bits (171), Expect = 4e-15
 Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 11/127 (8%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           + I  +T   +G Y     +     T    + +       +  P     ++      C  
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRK-MENQDALVCIS 163

Query: 79  T--PYDSGPYLIAWFKDGRQIP----GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
              P      ++ W     Q         +        +        +C AR   G    
Sbjct: 164 ESVP----EPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECT 219

Query: 133 GSAELQL 139
               + L
Sbjct: 220 RLFTIDL 226

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 68.2 bits (166), Expect = 2e-14
 Identities = 17/145 (11%), Positives = 36/145 (24%), Gaps = 18/145 (12%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
                       V+     +  +        RC + N  G     +   +          
Sbjct: 178 SQGESCKEESPAVVKKEEKV--LHELFGTDIRCCARNELGRECTRL-FTIDLNQTPQTTL 234

Query: 62  PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT--------------SSTSLV 107
           P L + +      +C+    + G   + W  + + +                        
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293

Query: 108 INPVGREDRGIYQCIARRSDGDVAQ 132
           ++ V R D G Y C + +     A 
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQSAL 318

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 65.1 bits (158), Expect = 2e-13
 Identities = 15/135 (11%), Positives = 31/135 (22%), Gaps = 14/135 (10%)

Query: 20  AIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT 79
                +   S +Y   S +          L+  +          + V +  S   Q  + 
Sbjct: 18  KNNDSSVGKSSSYPMVSES---PEDLGCALRPQSS-GTVYEAAAVEVDVSASITLQVLVD 73

Query: 80  PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQ 132
               G     W      +  +           S+VI  +     G Y    +    +   
Sbjct: 74  --APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YT 130

Query: 133 GSAELQLGGTRNIKH 147
               + +  T     
Sbjct: 131 ILFTVSIRNTLLYTL 145

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 58.6 bits (141), Expect = 5e-11
 Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 29/136 (21%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
              +    G  ++         G Y   + N   + T    L +    +V        + 
Sbjct: 369 CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--------LA 420

Query: 68  LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------------------TSLVI 108
              ++   C    Y        W K   + P  T                     +S  +
Sbjct: 421 EASASQASCFSDGYP--LPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTL 478

Query: 109 NPVGREDRGIYQCIAR 124
           N        + +C A 
Sbjct: 479 NMSEAIKGFLVKCCAY 494

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 6/44 (13%), Positives = 13/44 (29%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
             +    A      +C + N  G +   + L    P+    +  
Sbjct: 476 STLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGG 519

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 82.0 bits (202), Expect = 1e-19
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 14/141 (9%)

Query: 2   EPLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV 59
               V     TR+      L +     EDSGTY C++ N        + L+V       +
Sbjct: 64  SARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFL 123

Query: 60  NPPLLS--VHLDGSANFQC---EITPYDSGPYLIAWFKDGRQIPGRT-------SSTSLV 107
                   + L  S    C        D     I W+KD   +            +T L+
Sbjct: 124 PFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLL 183

Query: 108 INPVGREDRGIYQCIARRSDG 128
           ++ V  ED G Y+C+   +  
Sbjct: 184 VHDVALEDAGYYRCVLTFAHE 204

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 62.0 bits (150), Expect = 3e-12
 Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 33/152 (21%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRL--QVSTPYRVDVNPPL-------LSVHLD 69
           L +  V  ED+G YRC  +         +    ++    + +   P+       +S  L 
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLG 241

Query: 70  GSANFQCEITPYDSGP--YLIAWFKDGRQIP--------------------GRTSSTSLV 107
                 C++      P   ++ W  +   I                            L+
Sbjct: 242 SRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLI 301

Query: 108 INPVGREDRGI-YQCIARRSDGDVAQGSAELQ 138
            +PV RED  + ++C+   +          ++
Sbjct: 302 FDPVTREDLHMDFKCVV-HNTLSFQTLRTTVK 332

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 17/111 (15%)

Query: 44  TAEVRLQVSTPYRVD---VNPPLLSVHLDGSANFQCEITPYD-----SGPYLIAWFKDGR 95
           T +                +              +C   PY      S    + W K+  
Sbjct: 5   TLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDS 64

Query: 96  QIPGRTSST--------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
                            +L + P  +ED G Y C  R +     + S EL+
Sbjct: 65  ARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASY-CDKMSIELR 114

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 18  ILAIEGVTAEDSGT-YRCSSSNIGGEATAEVRLQV 51
            L  + VT ED    ++C   N     T    ++ 
Sbjct: 299 PLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 81.9 bits (202), Expect = 2e-19
 Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 19/151 (12%)

Query: 6   VLPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL 63
           +    +         L I   + +D+G Y     +  G+  + ++L       + +    
Sbjct: 48  ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCK 107

Query: 64  LSVHLDGSANFQCEIT--------PYDSGPYLIAWFKDGRQIP--GRTSST------SLV 107
                      Q             Y      + W  +G  I    R  +        L 
Sbjct: 108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ 167

Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           IN     D+G Y            Q + +L 
Sbjct: 168 INEPTPNDKGKYVMELFDGKT-GHQKTVDLS 197

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 74.6 bits (183), Expect = 7e-17
 Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 41/168 (24%)

Query: 6   VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST-------- 53
           +    R +         L I   T  D G Y     +        V L            
Sbjct: 149 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEF 208

Query: 54  -------------PYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP 98
                           +   P ++++    + N  C +   P    P  ++W K+ + + 
Sbjct: 209 QRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP----PPEVSWLKNEKALA 264

Query: 99  G---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
                        +    IN V   D G Y  + +   G        +
Sbjct: 265 SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTV 311

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 56.1 bits (135), Expect = 3e-10
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 59  VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVG 112
           V      V  + +   +C++       + I W+KD R+I        +    +L+I    
Sbjct: 11  VEYLSWEVTGECNVLLKCKVANIKKETH-IVWYKDEREISVDEKHDFKDGICTLLITEFS 69

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
           ++D GIY+ I +   G   +   +L 
Sbjct: 70  KKDAGIYEVILKDDRG-KDKSRLKLV 94

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
             I GV+  DSG Y     N  G  T++  + V  P
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 79.8 bits (197), Expect = 2e-19
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 25/154 (16%)

Query: 5   LVLPGPRTRVLGP-----ILAIEGVTA-EDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRV 57
           +     R  VL       IL IE V A  D   Y C + N  G+A +A+  L +    + 
Sbjct: 47  VSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKT 106

Query: 58  DVNPPL-------LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG-----RTSS 103
               P+         + +  +    C+    P       I W K+  ++           
Sbjct: 107 PAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP----TPNIYWIKNQTKVDMSNPRYSLKD 162

Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
             L I     ED+G Y+C+A  S G     +  L
Sbjct: 163 GFLQIENSREEDQGKYECVAENSMGTEHSKATNL 196

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 51  VSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSS----- 103
            + P  +   P    V + G A+F C     P  S    I W K+G+++ G  S      
Sbjct: 3   GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPS----IVWRKNGKKVSGTQSRYTVLE 58

Query: 104 -----TSLVINPVGR-EDRGIYQCIARRSDGDVAQGSAELQ 138
                + L I PV    D   Y+C+A    GD     A L 
Sbjct: 59  QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT 99

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVSTPYRVDVNPP 62
           L IE    ED G Y C + N  G   ++   L V    RV     
Sbjct: 165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR-RVGTKHH 208

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 78.8 bits (194), Expect = 2e-19
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 9   GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
           G  +      L I     EDSG Y+C         +  V L+V     + +      V  
Sbjct: 43  GSLSEETNSSLNIVNAKFEDSGEYKCQHQQ--VNESEPVYLEVF-SDWLLLQASAEVVME 99

Query: 69  DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 128
                 +C     +   Y + ++KDG  +     + ++ I     ED G Y C  +    
Sbjct: 100 GQPLFLRCH-GWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQL 158

Query: 129 DVAQGSAELQ 138
           D       + 
Sbjct: 159 DYESEPLNIT 168

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 51.4 bits (123), Expect = 4e-09
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRED 115
           +V +NPP   +    +    C             WF +G       +++SL I     ED
Sbjct: 6   KVSLNPPWNRIFKGENVTLTCN-GNNFFEVSSTKWFHNGSLSE--ETNSSLNIVNAKFED 62

Query: 116 RGIYQCIARRSDG 128
            G Y+C  ++ + 
Sbjct: 63  SGEYKCQHQQVNE 75

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 78.4 bits (193), Expect = 3e-19
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 6/131 (4%)

Query: 9   GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
                       I+  T  DSG YRC ++      +  V+L+V   + +   P    V  
Sbjct: 46  ESLISSQASSYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLLLQAPR--WVFK 101

Query: 69  DG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
           +    + +C  +  ++  + + + ++G+       ++   I     +D G Y C      
Sbjct: 102 EEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGS 160

Query: 128 GDVAQGSAELQ 138
            +V+  +  + 
Sbjct: 161 KNVSSETVNIT 171

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 50  QVSTPYR--VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV 107
           +     +  V + P   SV    S   +C+   Y        WF +   I   + ++S  
Sbjct: 1   RTEDLPKAVVFLEPQWYSVLEKDSVTLKCQ-GAYSPEDNSTQWFHNESLIS--SQASSYF 57

Query: 108 INPVGREDRGIYQCIARRS 126
           I+     D G Y+C    S
Sbjct: 58  IDAATVNDSGEYRCQTNLS 76

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 81.5 bits (200), Expect = 3e-19
 Identities = 27/145 (18%), Positives = 40/145 (27%), Gaps = 12/145 (8%)

Query: 7   LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSV 66
           LP  R      +L        D+G Y C   N    +     L+V        +P  L V
Sbjct: 69  LPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPV 128

Query: 67  H----LDGSANFQCEIT---PYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGRED 115
           H      G     C         S    I W+    +I           +L        +
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISN 188

Query: 116 RGIYQCIARRSD-GDVAQGSAELQL 139
            G Y C+    + G     +  L +
Sbjct: 189 NGNYTCVVTYPENGRTFHLTRTLTV 213

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 66.0 bits (160), Expect = 1e-13
 Identities = 24/168 (14%), Positives = 45/168 (26%), Gaps = 34/168 (20%)

Query: 5   LVLPGPRTRVLGPILAIEGVTAEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDV- 59
            +         G  L+       ++G Y C      +      T  + ++V    +  V 
Sbjct: 165 KIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVP 224

Query: 60  -------NPPLLSVHLDGSANFQCEITPYDSG--PYLIAWFKDGRQI------------- 97
                  +  +            C +           + W  DG++              
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESI 284

Query: 98  -----PGRTSSTSLVINPVGREDRGI-YQCIARRSDGDVAQGSAELQL 139
                   T +  L I  V  ED    Y C AR + G     +A+++ 
Sbjct: 285 SHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG-EVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 14/68 (20%)

Query: 83  SGPYLIAWFKDGRQIPGRT-------------SSTSLVINPVGREDRGIYQCIARRSDGD 129
           S    + W+   +                       L   P    D G Y C+ R +   
Sbjct: 45  SAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC 104

Query: 130 VAQGSAEL 137
            ++ +  L
Sbjct: 105 -SKVAFPL 111

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 18  ILAIEGVTAED-SGTYRCSSSNIGGEATAEVRLQVSTP 54
           IL+I+ VT+ED   +Y C + +  GE     +++   P
Sbjct: 297 ILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVP 334

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 78.4 bits (193), Expect = 4e-19
 Identities = 31/148 (20%), Positives = 44/148 (29%), Gaps = 22/148 (14%)

Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
            L   R         I    AEDSG Y C   +      A   ++V     +  +    +
Sbjct: 45  ELTATRKNASNMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITGHKRSEN 103

Query: 66  VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP-------GR-------TSSTSLVIN 109
            +    A   C+    P         W K    +        GR         +   ++N
Sbjct: 104 KNEGQDAMMYCKSVGYP----HPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVN 159

Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAEL 137
               ED G Y+C A  S G  A  S  L
Sbjct: 160 LQITEDPGEYECNATNSIG-SASVSTVL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVG 112
           R+  +  ++          QC +T          W K+G ++       S+    IN   
Sbjct: 5   RIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPR 64

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
            ED G Y C+         + +A ++
Sbjct: 65  AEDSGEYHCVYHFVSA--PKANATIE 88

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 77.8 bits (192), Expect = 7e-19
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 23/151 (15%)

Query: 6   VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
           ++   + ++        L +     ED G Y C ++N  GE     +L +    +     
Sbjct: 48  LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107

Query: 62  PL---LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GRTS------STSLVI 108
           PL       +  +          P  +    + WF   + +      +       T LV+
Sbjct: 108 PLKEKYYGAVGSTLRLHVMYIGRPVPA----MTWFHGQKLLQNSENITIENTEHYTHLVM 163

Query: 109 NPVGRE-DRGIYQCIARRSDGDVAQGSAELQ 138
             V R+   G Y+       G       +++
Sbjct: 164 KNVQRKTHAGKYKVQLSNVFG-TVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 23/89 (25%)

Query: 64  LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP----------GRTSSTSLVIN 109
           ++  L  +A   C+I     P       I W++ G+++           GRT   +L + 
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLP------DIKWYRFGKELIQSRKYKMSSDGRTH--TLTVM 68

Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
              +ED G+Y CIA    G   + S++L 
Sbjct: 69  TEEQEDEGVYTCIATNEVG-EVETSSKLL 96

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 5   LVLPGPRTRVL----GPILAIEGVTAE-DSGTYRCSSSNIGGEATAEVRLQV 51
           L+       +        L ++ V  +  +G Y+   SN+ G   A + +++
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 77.9 bits (192), Expect = 8e-19
 Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 10/127 (7%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEA---TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
           +     +  D G Y C + N  GEA    A + + +        NP  + V +   A  +
Sbjct: 74  IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD-DFRQNPSDVMVAVGEPAVME 132

Query: 76  CEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIYQCIARRSDGDV 130
           C+  P       I+W KDG  +  +          L+I    + D G Y C+     G+ 
Sbjct: 133 CQP-PRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGER 191

Query: 131 AQGSAEL 137
               AEL
Sbjct: 192 ESEVAEL 198

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 20/110 (18%)

Query: 45  AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIP----- 98
             +R Q   P R+  +P  L V     A   C+       P   I W+K G ++      
Sbjct: 1   GSLR-QEDFPPRIVEHPSDLIVSKGEPATLNCKAE---GRPTPTIEWYKGGERVETDKDD 56

Query: 99  ----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
                     G      +V     R D G+Y C+AR   G+     A L+
Sbjct: 57  PRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE 106

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 79.3 bits (195), Expect = 1e-18
 Identities = 37/169 (21%), Positives = 53/169 (31%), Gaps = 41/169 (24%)

Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD------- 58
           ++P  R  V    L +   + EDSG Y C                   P   D       
Sbjct: 50  LVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDE 109

Query: 59  ------------------VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP 98
                             ++  LL+V    +  F+C     P  S    I+W K+GR+  
Sbjct: 110 AEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS----ISWLKNGREFR 165

Query: 99  G---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           G         R    SLV+  V   DRG Y C+     G   + +  L 
Sbjct: 166 GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLD 213

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 71.6 bits (175), Expect = 9e-16
 Identities = 31/143 (21%), Positives = 40/143 (27%), Gaps = 25/143 (17%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-----STPYRVDVNPPLLSVHLDGSAN 73
           L +E V   D G Y C   N  G       L V       P      P   +  L     
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241

Query: 74  FQCEIT-------------------PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRE 114
           F C++                        G   +   K             L ++ V  E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301

Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
           D G Y C+A  S G  +  SA L
Sbjct: 302 DAGEYTCLAGNSIG-FSHHSAWL 323

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 15/89 (16%), Positives = 21/89 (23%), Gaps = 5/89 (5%)

Query: 54  PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG----RTSSTSLVIN 109
           P         L      +    C             W KDG  +            L + 
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMG-PTVWVKDGTGLVPSERVLVGPQRLQVL 66

Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
               ED G Y C  R +   +   S  + 
Sbjct: 67  NASHEDSGAYSCRQRLTQRVLCHFSVRVT 95

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 43.5 bits (102), Expect = 6e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L++  VT ED+G Y C + N  G +     L V   
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 76.9 bits (189), Expect = 2e-18
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 26/143 (18%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD------------------VN 60
           + +E +  ED GTY     +      + V L      ++                   V 
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGRE 114
                V  + +   +C++         I W+KD R+I        +    +L+I    ++
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKK-ETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 181

Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
           D GIY+ I +   G   +   +L
Sbjct: 182 DAGIYEVILKDDRG-KDKSRLKL 203

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 45.7 bits (108), Expect = 7e-07
 Identities = 8/71 (11%), Positives = 20/71 (28%), Gaps = 11/71 (15%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
           + +   G   F  +          + +  + ++I             T    + +  +  
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 70

Query: 114 EDRGIYQCIAR 124
           ED G Y    +
Sbjct: 71  EDEGTYTFQLQ 81

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           L I   + +D+G Y     +  G+  + ++L  
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 77.2 bits (190), Expect = 2e-18
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 14  VLGPILAIEGVTAEDSGTYRCSSSNIGGEA---TAEVRLQVSTPYRVDVNPPLLSVHLDG 70
            L     ++G   +D G Y C + N  G+A    A +++ V       V P    V    
Sbjct: 66  ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-DFRVEPKDTRVAKGE 124

Query: 71  SANFQCEITPYDSGPYLIAWFKDGRQIPGR-------------TSSTSLVINPVGREDRG 117
           +A  +C   P       + W KDG  +                    +L+I+ V   D G
Sbjct: 125 TALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183

Query: 118 IYQCIARRSDGDVAQGSAEL 137
            Y+CIA+   G      A+L
Sbjct: 184 NYKCIAQNLVGTRESSYAKL 203

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 17/108 (15%)

Query: 45  AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSS 103
           A +  Q  +P  +  +P  L V  +  A   C++      P   I WFKDG  +      
Sbjct: 1   APLAGQYQSPRII-EHPTDLVVKKNEPATLNCKVE---GKPEPTIEWFKDGEPVSTNEKK 56

Query: 104 T------------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
           +               +     +D G Y C+A+   G      A LQ+
Sbjct: 57  SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 76.5 bits (188), Expect = 3e-18
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 9   GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
                       I+  T +DSG YRC +       +  V+L+V   + +   P    V  
Sbjct: 46  ESLISSQASSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLLQAPR--WVFK 101

Query: 69  DG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
           +    + +C  +  ++  + + + ++G+       ++   I     +D G Y C      
Sbjct: 102 EEDPIHLRCH-SWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGS 160

Query: 128 GDVAQGSAELQL 139
            +V   S  +Q+
Sbjct: 161 KNV--SSETVQI 170

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 51.0 bits (122), Expect = 9e-09
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 57  VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR 116
           V + P    V    S   +C+            WF +   I  + S  S  I+    +D 
Sbjct: 10  VFLEPQWYRVLEKDSVTLKCQGAY-SPEDQSTQWFHNESLISSQAS--SYFIDAATVDDS 66

Query: 117 GIYQCIARRS 126
           G Y+C  + S
Sbjct: 67  GEYRCQTQLS 76

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 76.3 bits (187), Expect = 5e-18
 Identities = 24/126 (19%), Positives = 34/126 (26%), Gaps = 8/126 (6%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           + +  +   D GTY+C      G A  +  L V             S  +      +CE 
Sbjct: 86  INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEP 145

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSST------SLVINPVGREDRGIYQCIARRSDGDVAQ 132
               S P    W K        T          + +     E  G Y C  +   G   Q
Sbjct: 146 K-EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVG-SDQ 203

Query: 133 GSAELQ 138
               L 
Sbjct: 204 CMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   LVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
             +P P    +  P+++++  ++E SGTY C+  N  G     +RL V  P
Sbjct: 163 QTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 23/124 (18%), Positives = 32/124 (25%), Gaps = 41/124 (33%)

Query: 49  LQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP-------- 98
           L ++TP         +      +A   C+ T  P D GP  I W                
Sbjct: 1   LSITTP------EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54

Query: 99  ---------------GRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQGS 134
                          GR             S+ +  +   D G YQC   +    VA   
Sbjct: 55  YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKV-KKAPGVANKK 113

Query: 135 AELQ 138
             L 
Sbjct: 114 FLLT 117

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 74.9 bits (184), Expect = 5e-18
 Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 4/120 (3%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
                    DSG Y C +       +  V L V   + V   P L       +   +C  
Sbjct: 53  SYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEWLVLQTPHL-EFQEGETIMLRCH- 108

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +  D     + +F++G+         +  I        G Y C         +     + 
Sbjct: 109 SWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTIT 168

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 53.3 bits (128), Expect = 8e-10
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 57  VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR 116
           + + PP ++V  + S    C+          I WF +G  IP  T +           D 
Sbjct: 7   LKLEPPWINVLQEDSVTLTCQGAR-SPESDSIQWFHNGNLIP--THTQPSYRFKANNNDS 63

Query: 117 GIYQCIARRSDG 128
           G Y C   ++  
Sbjct: 64  GEYTCQTGQTSL 75

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 16  GPILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQV 51
            P  +I       SG Y C+ +      +   V + V
Sbjct: 133 DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 75.7 bits (186), Expect = 6e-18
 Identities = 33/156 (21%), Positives = 48/156 (30%), Gaps = 27/156 (17%)

Query: 3   PLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--------- 51
           P+ +    R  V      L I  V A D G Y C  S+     +   +            
Sbjct: 50  PVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTT 109

Query: 52  -STPYRVDVNPPLLSVHLDGSANFQCEI----TPYDSGPYLIAWFKDGRQIPGR----TS 102
              P  + V    +   +  +   +C       P       I W K    +P      TS
Sbjct: 110 KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD------IRWRKVLEPMPSTAEISTS 163

Query: 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
              L I  +  ED GIY+C A    G   +  A + 
Sbjct: 164 GAVLKIFNIQLEDEGIYECEAENIRG-KDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 54.1 bits (130), Expect = 6e-10
 Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 8/87 (9%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVG 112
            P + V         C+   +        W  +   +               +L I  V 
Sbjct: 15  RPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVE 74

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQL 139
             D+G Y C         +  S  + L
Sbjct: 75  ASDKGNYSCFVSSPSITKSVFSKFIPL 101

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
                   G +L I  +  ED G Y C + NI G+   + R+ V
Sbjct: 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 77.6 bits (190), Expect = 7e-18
 Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 11  RTRVLGPILAIEGVTAEDSGT-YRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPPLLSVHL 68
             RV    L I   T+ DS   Y C+ +   G+     VR  +  P         L  H 
Sbjct: 83  NRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHD 142

Query: 69  DGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIYQCIA 123
               +  C I         I W+K+ +++         S  +L+I+    ED G Y C  
Sbjct: 143 KYGIDLYCGILYAKHYNN-ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYV 201

Query: 124 RRSDG 128
              D 
Sbjct: 202 HYDDV 206

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 75.3 bits (184), Expect = 4e-17
 Identities = 29/161 (18%), Positives = 44/161 (27%), Gaps = 26/161 (16%)

Query: 4   LLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD----- 58
            L++ G +    G  L I     EDSG Y C           ++ +       V      
Sbjct: 169 ELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH 228

Query: 59  ----VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP-------------G 99
               +  P ++V +   AN  C            LI W      I              G
Sbjct: 229 RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSG 288

Query: 100 RTSSTSLVINPVGREDRG-IYQCIARRSDGDVAQGSAELQL 139
             +  +L    V  E  G  Y C    +       +  + L
Sbjct: 289 GITEATLYFENVTEEYIGNTYTCRG-HNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 11/84 (13%)

Query: 66  VHLDGSANFQCEITP-------YDSGPYLIAWFKDGRQIP---GRTSSTSLVINPVGRED 115
             L    + +C           Y+    ++ W K G+       R  +  L I      D
Sbjct: 41  AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSND 100

Query: 116 RG-IYQCIARRSDGDVAQGSAELQ 138
               Y C     +GD  QG     
Sbjct: 101 SHRRYLCTVTTKNGDCVQGIVRSH 124

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 76.3 bits (187), Expect = 2e-17
 Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 12/135 (8%)

Query: 11  RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
            T  +     +         +  C  +         + L V     V +     + +L  
Sbjct: 188 GTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQR 247

Query: 71  -SANFQCEITPYDSGP--YLIAWFKDGRQIPGR---TSSTSLVINPVGREDRGIYQCIAR 124
                 C+    D+ P      W      +P      + T     P+     G Y C A 
Sbjct: 248 MDVKLTCKA---DANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEAT 304

Query: 125 RSDGDVAQGSAELQL 139
              G     S ++++
Sbjct: 305 NPIG---TRSGQVEV 316

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 17/122 (13%)

Query: 19  LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLD-----GSA 72
           + +  +  ED G Y C  ++   G   +++ L V       +      +           
Sbjct: 94  IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVL 153

Query: 73  NFQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTS-LVINPVGREDRGIYQCI 122
              C  +     P +++W    +            G  +  S   + P     +    CI
Sbjct: 154 VATCT-SANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 212

Query: 123 AR 124
             
Sbjct: 213 VN 214

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 12/122 (9%), Positives = 25/122 (20%), Gaps = 29/122 (23%)

Query: 44  TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGP--YLIAWFKDGRQIP--- 98
           T   ++       V V    +   +       C             + W K         
Sbjct: 5   TGGQQMGRDPSQVVQV-NDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV 63

Query: 99  -----------------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 135
                                     +  ++ ++ +  ED G+Y C          +   
Sbjct: 64  AIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQL 123

Query: 136 EL 137
            L
Sbjct: 124 NL 125

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 9/56 (16%), Positives = 22/56 (39%)

Query: 7   LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
           LP         +     +    +GTY C ++N  G  + +V + ++    ++ +  
Sbjct: 274 LPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHHH 329

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 73.9 bits (181), Expect = 2e-17
 Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 10/122 (8%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L +        G Y C       E T +  L V  P  + V+               C +
Sbjct: 69  LVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV 128

Query: 79  T--P-------YDSGPYLIAWFKDGR-QIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 128
              P          G        +G        S +  V   + +       C+ +    
Sbjct: 129 NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188

Query: 129 DV 130
           + 
Sbjct: 189 EA 190

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 74.2 bits (182), Expect = 3e-17
 Identities = 32/144 (22%), Positives = 39/144 (27%), Gaps = 29/144 (20%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-----STPYRVDVNPPLLSVHLDGSAN 73
           L +E V   D G Y C   N  G       L V       P      P   S  + G   
Sbjct: 78  LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVE 137

Query: 74  FQCEITPYDSGPY-LIAWFKDGRQIPGRTSST-------------------SLVINPVGR 113
           F C++    S     I W K   +   +                        L +  V  
Sbjct: 138 FVCKVY---SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE 194

Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
            D G Y C      G  A  SA L
Sbjct: 195 ADAGEYICKVSNYIG-QANQSAWL 217

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 21/116 (18%)

Query: 36  SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWF 91
           + +   E +   R    T     +   L +V    +  F+C       P       + W 
Sbjct: 2   AEDFVSENSNNKRAPYWTN-TEKMEKRLHAVPAANTVKFRCPAGGNPMPT------MRWL 54

Query: 92  KDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           K+G++            R    SL++  V   D+G Y C+     G     +  L 
Sbjct: 55  KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLD 109

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           LA+  VT  D+G Y C  SN  G+A     L V   
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 73.8 bits (181), Expect = 4e-17
 Identities = 22/155 (14%), Positives = 39/155 (25%), Gaps = 40/155 (25%)

Query: 6   VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN- 60
           +    R +         L I   T  D G Y     +        V L            
Sbjct: 44  IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEF 103

Query: 61  --------------------PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP 98
                               P ++++    + N  C +   P    P  ++W K+ + + 
Sbjct: 104 QRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP---P-EVSWLKNEKALA 159

Query: 99  G---------RTSSTSLVINPVGREDRGIYQCIAR 124
                        +    IN V   D G Y  + +
Sbjct: 160 QTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 10/76 (13%)

Query: 71  SANFQCEITPYDSGPYLIAWFKDGRQIP--GRTSST------SLVINPVGREDRGIYQCI 122
                  +T Y      + W  +G  I    R  +        L IN     D+G Y   
Sbjct: 19  GIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 77

Query: 123 ARRSDGDVAQGSAELQ 138
                    Q + +L 
Sbjct: 78  LFDGKT-GHQKTVDLS 92

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
             I GV+  DSG Y     N  G  T++  + V  P
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 74.8 bits (183), Expect = 5e-17
 Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 13/140 (9%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVN 60
            P+      R       L       EDSG Y C   N       ++  +       +  N
Sbjct: 47  TPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYN 106

Query: 61  PPLLS---VHLDGSANFQCEITPYDSG----PYLIAWFKDGRQIPG-----RTSSTSLVI 108
              +    + + G     C    +          + W+KD + +             L++
Sbjct: 107 AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIV 166

Query: 109 NPVGREDRGIYQCIARRSDG 128
             V  + RG Y C A  +  
Sbjct: 167 MNVAEKHRGNYTCHASYTYL 186

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 63.2 bits (153), Expect = 8e-13
 Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 36/167 (21%)

Query: 5   LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSN----IGGEATAEVRLQVSTPYRVDVN 60
           L+L       +   L +  V  +  G Y C +S          T  +             
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEE-NKPTR 208

Query: 61  PPLLS-------VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------- 100
           P ++S       V L       C +T          W  +G  I                
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVT-GQLSDI-AYWKWNGSVIDEDDPVLGEDYYSVEN 266

Query: 101 -------TSSTSLVINPVGRED-RGIYQCIARRSDGDVAQGSAELQL 139
                  T  T L I+ +     +  + C A+ + G +     +L  
Sbjct: 267 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG-IDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 11/91 (12%)

Query: 57  VDVNPPLLSVHLDG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLV 107
            +    ++ V          C + P +     I W+KD  + P  T            L 
Sbjct: 7   KEREEKIILVSSANEIDVRPCPLNPNEH-KGTITWYKDDSKTPVSTEQASRIHQHKEKLW 65

Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
             P   ED G Y C+ R S     +     +
Sbjct: 66  FVPAKVEDSGHYYCVVRNSSY-CLRIKISAK 95

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 72.7 bits (178), Expect = 2e-16
 Identities = 31/145 (21%), Positives = 40/145 (27%), Gaps = 30/145 (20%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-----STPYRVDVNPPLLSVHLDGSAN 73
           L +E V   D G Y C   N  G       L V       P      P   +  L     
Sbjct: 74  LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 133

Query: 74  FQCEITPYDSGPYL-IAWFKDGRQIPGR--------------------TSSTSLVINPVG 112
           F C++    S     I W K       +                     +   L +  V 
Sbjct: 134 FHCKVY---SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190

Query: 113 REDRGIYQCIARRSDGDVAQGSAEL 137
             D G Y C A    G VA+ +  L
Sbjct: 191 ERDGGEYLCRATNFIG-VAEKAFWL 214

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 19/110 (17%)

Query: 43  ATAEVRLQVSTPYRVD---VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI 97
           A  +  +    PY      ++  LL+V    +  F+C     P  S    I+W K+GR+ 
Sbjct: 1   ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS----ISWLKNGREF 56

Query: 98  PG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            G         R    SLV+  V   DRG Y C+     G   + +  L 
Sbjct: 57  RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLD 105

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L +  V+  D G Y C ++N  G A     L V  P
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 71.0 bits (173), Expect = 4e-16
 Identities = 15/134 (11%), Positives = 40/134 (29%), Gaps = 13/134 (9%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
            L +  V+  +  +Y C+++    +    +++++ +  +         +        +C 
Sbjct: 55  TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCS 114

Query: 78  ITPYDSGPYL-IAWFKDGRQIP------------GRTSSTSLVINPVGREDRGIYQCIAR 124
           +        L I   K    +               T S  +   PV  +   +  C A+
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAK 174

Query: 125 RSDGDVAQGSAELQ 138
               ++       Q
Sbjct: 175 LHIDEMDSVPTVRQ 188

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 72.1 bits (176), Expect = 5e-16
 Identities = 25/141 (17%), Positives = 40/141 (28%), Gaps = 13/141 (9%)

Query: 6   VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEAT--AEVRLQVSTPYRVDVNPPL 63
                 T  +  +  +   +  D     C   +   E      V L V  P  V ++   
Sbjct: 166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYD 225

Query: 64  LSVHLDG-SANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT--SSTSLVINPVGREDRGI 118
            + +L    A   C+    P    P    W      +P         L+I PV +     
Sbjct: 226 NNWYLGQNEATLTCDARSNP---EPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTT 282

Query: 119 YQCIARRSDGDVAQGSAELQL 139
             C    + G      AEL +
Sbjct: 283 LICNVTNALG---ARQAELTV 300

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 65.9 bits (160), Expect = 9e-14
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)

Query: 19  LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           L + G+  ED G Y C   +   G  + ++ L+V    +       + +  +     +C 
Sbjct: 81  LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV 140

Query: 78  ITPYDSGPYLIAWFKDGRQIPGR-----------TSSTSLVINPVGREDRGIYQCIAR 124
            T        I W  D   +P             T ++  ++ P  + D     C   
Sbjct: 141 STGGRPPAQ-ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVE 197

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 10  PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           P     G  L I  V    + T  C+ +N  G   AE+ +QV
Sbjct: 261 PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 16/122 (13%), Positives = 28/122 (22%), Gaps = 38/122 (31%)

Query: 46  EVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGP---YLIAWFKDGRQIPGRT- 101
           +V +Q          P  +   L  S    C +   +        + W + G        
Sbjct: 1   DVVVQA---------PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVF 51

Query: 102 -------------------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 136
                                     + SL +  +  ED G Y C+              
Sbjct: 52  HQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIW 111

Query: 137 LQ 138
           L+
Sbjct: 112 LR 113

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 69.5 bits (170), Expect = 8e-16
 Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS-ANFQCE 77
           L I+ +  +D   Y+ S  +  G+   E    +    ++        +          CE
Sbjct: 68  LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISWTCINTTLTCE 123

Query: 78  ITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
           +    +G    +  ++DG+ +     S  ++ +         ++C A 
Sbjct: 124 VM---NGTDPELNLYQDGKHLK---LSQRVITHKWTTSLSAKFKCTAG 165

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 11/78 (14%), Positives = 19/78 (24%), Gaps = 17/78 (21%)

Query: 68  LDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------------GR---TSSTSLVINP 110
           L    N              I W K   +                       + +L I  
Sbjct: 13  LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKH 72

Query: 111 VGREDRGIYQCIARRSDG 128
           +  +D+ IY+     + G
Sbjct: 73  LKTDDQDIYKVSIYDTKG 90

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 67.8 bits (165), Expect = 2e-14
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
                         E   A  +GTY CS+SN     T+ + + V  P ++ +    L   
Sbjct: 48  FNEMVENKKNEWIQEKAEATRTGTYTCSNSN---GLTSSIYVFVRDPAKLFLVGLPLFGK 104

Query: 68  LDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRTS------STSLVINPVGREDRGIYQ 120
            D  A  +C +T  D      +  + DG+ +P   +      +   + N      R   +
Sbjct: 105 EDSDALVRCPLT--DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR 162

Query: 121 CIARRSDGDVAQGSAELQ 138
           C A+R    +      L+
Sbjct: 163 CAAQRDGTWLHSDKFTLK 180

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 21/121 (17%)

Query: 24  VTAEDSGTYRCSSSNIGGEATAE-----VRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
             A      RC++   G    ++     VR  +     V V      +    +    C I
Sbjct: 153 KRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTI 212

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIA 123
               +      W K   Q                       +L I+    +D G++ C A
Sbjct: 213 KDVST-SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYA 271

Query: 124 R 124
            
Sbjct: 272 N 272

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
            L I     +DSG + C ++N  G A     L+V
Sbjct: 253 TLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 9/77 (11%), Positives = 15/77 (19%), Gaps = 7/77 (9%)

Query: 53  TPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR-QIPGRTSSTSLVINPV 111
           +P  +      L V    + +  C        P  + W                 +    
Sbjct: 11  SPPSIHPAQSELIVEAGDTLSLTC------IDPDFVRWTFKTYFNEMVENKKNEWIQEKA 64

Query: 112 GREDRGIYQCIARRSDG 128
                G Y C       
Sbjct: 65  EATRTGTYTCSNSNGLT 81

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVST-PYRVDVNPPLLSVHLDGSANFQC 76
           L  + +T +D G Y    ++       A VR  V     +  +     +V    S    C
Sbjct: 73  LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC 132

Query: 77  EITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIAR 124
                +     I W  + + +          +++ L I+P+ RED G YQC   
Sbjct: 133 LS---NDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS 183

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 16  GPILAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVS-TPYRVDVN 60
             IL I+ +  ED+G Y+C  SN      +  ++L +   P+    +
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHHHHH 208

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 46  EVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPY--DSGPYLIAWFKDGRQIPGRTSS 103
            V L V     + +     + +   +     EI  +  +S          GR+I    S+
Sbjct: 16  NVLLLVHN---LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII--YSN 70

Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
            SL+   +  +D G+Y       +    Q +   
Sbjct: 71  GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRF 104

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 64.3 bits (156), Expect = 8e-14
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 20/142 (14%)

Query: 12  TRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
             + G     +  + +  G Y C       E      +Q+  P RV        ++   +
Sbjct: 44  DALPGQKTEFKVDSDDQWGEYSCVFLP---EPMGTANIQLHGPPRVKAVKSSEHINEGET 100

Query: 72  ANFQCEITPYDSGPYLIAWFKDGR--------------QIPGRTSSTSLVINPVGRE-DR 116
           A   C+           AW+K                  +      + L I  +  E D 
Sbjct: 101 AMLVCKSESVPP-VTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 159

Query: 117 GIYQCIARRSDGDVAQGSAELQ 138
           G Y+C    S G   Q    L+
Sbjct: 160 GQYRCNGTSSKG-SDQAIITLR 180

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 5/86 (5%)

Query: 66  VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP-GRTSSTSLVINPVGREDRGIYQCIAR 124
             L       C +    +      W K G  +                 +  G Y C+  
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFL 69

Query: 125 RSDGDVAQGSAELQLGGTRNIKHYNN 150
                   G+A +QL G   +K   +
Sbjct: 70  PE----PMGTANIQLHGPPRVKAVKS 91

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 19  LAIEGVTAE-DSGTYRCSSSNIGGEATAEVRLQV 51
           L IE +  E D G YRC+ ++  G   A + L+V
Sbjct: 148 LHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 66.6 bits (161), Expect = 8e-14
 Identities = 32/142 (22%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 12  TRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
           T  L   + I  +   D+G Y C + +          LQV  P      P L+   L GS
Sbjct: 180 TGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE-----PELVYEDLRGS 234

Query: 72  ANFQCEITPYDSG------------PYLIAWFKDGRQIP---GRTSST--------SLVI 108
             F C + P  +                +     G++ P   GR            S+VI
Sbjct: 235 VTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVI 294

Query: 109 NPVGREDRGIYQCIARRSDGDV 130
             + +ED G Y C A       
Sbjct: 295 TGLRKEDAGRYLCGAHSDGQLQ 316

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 63.9 bits (154), Expect = 7e-13
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 25/136 (18%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
           ++ I  ++ +DSG Y+C         + +V L+VS    +  +  + +V L  +    C 
Sbjct: 76  VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCP 135

Query: 78  ITPYDSGPYLIAWFKDGRQIPGRTSSTS------------------------LVINPVGR 113
               ++     + +K     P     +S                        +VIN +  
Sbjct: 136 FKT-ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194

Query: 114 EDRGIYQCIARRSDGD 129
            D G Y C A      
Sbjct: 195 SDAGQYLCQAGDDSNS 210

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 61.2 bits (147), Expect = 6e-12
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 18/138 (13%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
            + +  +T+ D+G Y C ++      T      +     + V   + +  L  +    C 
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNV-TAVLGETLKVPCH 465

Query: 78  ITPYDSGP--YLIAWFKDGRQIPGRT---------------SSTSLVINPVGREDRGIYQ 120
                S    Y   W   G Q                       SL +N V R D G Y 
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYW 525

Query: 121 CIARRSDGDVAQGSAELQ 138
           C  ++        +  + 
Sbjct: 526 CGVKQGHFYGETAAVYVA 543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 57.3 bits (137), Expect = 1e-10
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 31/142 (21%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ----VSTPYRVDVNPPLLSVHLDGSAN 73
            + I G+  ED+G Y C + + G              V+    +  +P ++      S  
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVA 350

Query: 74  FQCEITPYDSGPYLIAWFKDGRQIP------------------GRTS--------STSLV 107
             C     +S   +  W                          GR S        + +++
Sbjct: 351 VLCPYNRKES-KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVI 409

Query: 108 INPVGREDRGIYQCIARRSDGD 129
           +N +   D G Y C+       
Sbjct: 410 LNQLTSRDAGFYWCLTNGDTLW 431

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 65.7 bits (159), Expect = 8e-14
 Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 37/153 (24%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L ++ V   D G Y C           +  +++     +   P  L V +  +   +C I
Sbjct: 86  LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV---LPEEPRDLRVRVGDTTQMRCSI 142

Query: 79  T-PYDSGPYLIAWFKDGRQIP------------------------GRTSST--------S 105
               +     + W                                 R   T        S
Sbjct: 143 QSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS 202

Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           + +  V   D+GIY C       + ++ +  L 
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLH 234

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 15/44 (34%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
           + ++ V   D G Y CS      E+   + L V          P
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 30/113 (26%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGR------------------- 95
            + V+ P L VH+  S    C +   +      + W                        
Sbjct: 7   GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPT 66

Query: 96  -QIPGRTSST--------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
            +   R+           SL++  V + D GIY C   R   +       ++L
Sbjct: 67  GRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEI-RLKNESMVMKKPVEL 118

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I+ +  EDS TY C   +       EV+L V   + +  N     +    S     E 
Sbjct: 70  LIIKNLKIEDSDTYICEVED----QKEEVQLLV---FGLTANSDT-HLLQGQSLTLTLES 121

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
            P  S P  +       +        +L ++ +  +D G + C   ++   V
Sbjct: 122 PPGSS-PS-VQCRSPRGKN--IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV 169

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           P  +    G  L++  +  +DSGT+ C+      +   ++ + V
Sbjct: 134 PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 11/86 (12%), Positives = 18/86 (20%), Gaps = 27/86 (31%)

Query: 70  GSANFQCEITPYDSGPYLIAWFK-------------------------DGRQIPGRTSST 104
            +    C  +          W                           D R+      + 
Sbjct: 11  DTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68

Query: 105 SLVINPVGREDRGIYQCIARRSDGDV 130
            L+I  +  ED   Y C       +V
Sbjct: 69  PLIIKNLKIEDSDTYICEVEDQKEEV 94

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 23/135 (17%)

Query: 21  IEGVTA-EDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP----PL--LSVHLDGSAN 73
           I G++  + SG+   S  N       +  L+     +  V P     +  + V    +A 
Sbjct: 1   ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR 60

Query: 74  FQCEIT--PYDSGPYLIAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCI 122
           F C++   P       + WFKD   +              + SL I+ V  +D   Y C 
Sbjct: 61  FDCKVEGYP----DPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116

Query: 123 ARRSDGDVAQGSAEL 137
           A  S G  A  +AEL
Sbjct: 117 AVNSLG-EATCTAEL 130

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L I  V  +D   Y C + N  GEAT    L V T 
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I+ +T +DSGTY  +  +  G       L +       V+ P++      +A   CE+
Sbjct: 63  LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM--VSKPMIYWE-CSNATLTCEV 119

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
              +     +  ++    +    S     ++      R  ++C A 
Sbjct: 120 L--EGTDVELKLYQGKEHLR---SLRQKTMSYQWTNLRAPFKCKAV 160

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 43.0 bits (101), Expect = 6e-06
 Identities = 11/84 (13%), Positives = 22/84 (26%), Gaps = 15/84 (17%)

Query: 60  NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP------------GR---TSST 104
           +   +   L    N              + W +    +             G     ++ 
Sbjct: 2   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61

Query: 105 SLVINPVGREDRGIYQCIARRSDG 128
            L I  + R+D G Y      ++G
Sbjct: 62  DLKIKNLTRDDSGTYNVTVYSTNG 85

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 63.3 bits (153), Expect = 7e-13
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 12/122 (9%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN---PPLLSVHLDGSANFQ 75
           L +   T+E++G+Y+ +  +     + E  + +     + VN   P    V         
Sbjct: 54  LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113

Query: 76  CEIT------PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD 129
             +       P D+     +W K    I     +  + I     +  G+Y         D
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDVIDT---TQDITIQEFTADKNGVYTVKVWGESED 170

Query: 130 VA 131
            A
Sbjct: 171 SA 172

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 26/139 (18%)

Query: 16  GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL--LSVHLDGSAN 73
              + I+  TA+ +G Y         ++ A    ++           +   +V L    +
Sbjct: 144 TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEIS 203

Query: 74  FQCEIT----------PYDSGPYLIAWFKDGRQIPGRTSST--------------SLVIN 109
               ++          P  +  Y     ++G+  P    S                L   
Sbjct: 204 LNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKE 263

Query: 110 PVGREDRGIYQCIARRSDG 128
               +D   + C+A+    
Sbjct: 264 SATYDDTAKFWCVAKLYQQ 282

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 4/83 (4%)

Query: 57  VDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRE 114
           V +                  +             W KD +     T++  L +     E
Sbjct: 5   VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT--LTVADATSE 62

Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
           + G Y+   + +D   +  S   
Sbjct: 63  NAGSYKVTVQDTDTMTSVESEVF 85

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 62.8 bits (152), Expect = 9e-13
 Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 19/129 (14%)

Query: 27  EDSGTYRCSSSNIGGEATAEVRL---QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDS 83
            +  +Y C ++    E  ++         +   V VN     V    +    C +    +
Sbjct: 151 FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI--GN 208

Query: 84  GPYLIAWFKDGRQIP-------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
                 W    ++                    + L I     ED G Y C    S  D 
Sbjct: 209 EVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH 268

Query: 131 AQGSAELQL 139
                 + +
Sbjct: 269 QD-EKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 60.5 bits (146), Expect = 6e-12
 Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 13/121 (10%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEA---TAEVRLQVSTPYRV----DVNPPLLSVHLDG 70
           +L +  +T  D+G Y C+ ++  G        + + V  P       D     + +    
Sbjct: 52  VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111

Query: 71  SANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD 129
                C +T     P L +   +    +              G  +   Y C     D +
Sbjct: 112 EITIPCRVT----DPQLVVTLHEKKGDVALPVPY-DHQRGFSGIFEDRSYICKTTIGDRE 166

Query: 130 V 130
           V
Sbjct: 167 V 167

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 13/83 (15%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDR 116
           L +++  +    C      SG   + W +  ++ P   +       S+ L +  +   D 
Sbjct: 10  LVLNVSSTFVLTC------SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDT 63

Query: 117 GIYQCIARRSDGDVAQGSAELQL 139
           G Y C    S G        L +
Sbjct: 64  GEYFCTHNDSRGLETDERKRLYI 86

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           IL I     EDSGTY C+ +    +   E  + +
Sbjct: 243 ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 62.9 bits (152), Expect = 1e-12
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I+ +  EDS TY C   +       EV+L V   + +  N     +    S     E 
Sbjct: 69  LIIKNLKIEDSDTYICEVED----QKEEVQLLV---FGLTANSD-THLLQGQSLTLTLES 120

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
            P  S P  +       +        +L ++ +  +D G + C     +    +   ++
Sbjct: 121 PP-GSSPS-VQCRSPRGKN--IQGGKTLSVSQLELQDSGTWTCTV-LQNQKKVEFKIDI 174

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 59.0 bits (142), Expect = 3e-11
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 18/122 (14%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
            L         SG    +     G+   EV L V                     N  CE
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA-------------TQLQKNLTCE 304

Query: 78  ITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
           +    S   +++   + ++      S       V   + G++QC+   SD       + +
Sbjct: 305 VWGPTSPKLMLSLKLENKEAK---VSKREKAVWVLNPEAGMWQCLL--SDSGQVLLESNI 359

Query: 138 QL 139
           ++
Sbjct: 360 KV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 28/153 (18%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV------------STPY 55
           P  +    G  L++  +  +DSGT+ C+      +   ++ + V                
Sbjct: 133 PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGE 192

Query: 56  RVDVNPPLL----SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST------- 104
           +V+ + PL      +   G   +Q E                   +   T          
Sbjct: 193 QVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKK 252

Query: 105 -----SLVINPVGREDRGIYQCIARRSDGDVAQ 132
                +L          G          G + Q
Sbjct: 253 LPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQ 285

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 11/86 (12%), Positives = 18/86 (20%), Gaps = 27/86 (31%)

Query: 70  GSANFQCEITPYDSGPYLIAWFK-------------------------DGRQIPGRTSST 104
            +    C  +          W                           D R+      + 
Sbjct: 10  DTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67

Query: 105 SLVINPVGREDRGIYQCIARRSDGDV 130
            L+I  +  ED   Y C       +V
Sbjct: 68  PLIIKNLKIEDSDTYICEVEDQKEEV 93

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 20/119 (16%)

Query: 30  GTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIA 89
            TY  +SS +    +     ++  P  V               N  CE+         I+
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQGPVAV-------YTWEGNQVNITCEVFA-YPSAT-IS 51

Query: 90  WFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           WF+DG+ +P             S++ L + P    D G Y C A  +          L 
Sbjct: 52  WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA-VNRIGQESLEFILV 109

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 42.9 bits (101), Expect = 9e-06
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
            L +   +  D G Y C++ N  G+ + E  L  +  
Sbjct: 77  YLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 57.9 bits (140), Expect = 3e-12
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 50  QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG----RTSSTS 105
           + + P+ V V    L VH       +C +   D     I W +DG Q+      R +   
Sbjct: 5   EQAQPWGVPVEVESLLVHPGDLLQLRCRLR--DDVQ-SINWLRDGVQLVESNRTRITGEE 61

Query: 106 LVINPVGREDRGIYQCIARRSDG 128
           + +      D G+Y C+     G
Sbjct: 62  VEVRDSIPADSGLYACVTSSPSG 84

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 6  VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
          ++   RTR+ G  + +      DSG Y C +S+  G  T    + VS
Sbjct: 49 LVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 24/132 (18%)

Query: 9   GPRTRVLGPILAIEGVTAE-DSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
                +    L +  VT++ +     C + N  G A   V++ VS P  V ++  +   H
Sbjct: 204 MKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHH 263

Query: 68  LDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSST---------------SLVINPV 111
                   C     D  P   + W  +G  +   +                   L +N  
Sbjct: 264 W-------CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 316

Query: 112 GREDRGIYQCIA 123
              + G Y  +A
Sbjct: 317 THVNNGNYTLLA 328

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L +   T  ++G Y   ++N  G+A+A +       
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 9/76 (11%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-------SSTSLVI 108
            + V  P  SV +      +C++     G     W     +            S    + 
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEG--RGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 217

Query: 109 NPVGREDRGIYQCIAR 124
           N     +R    C A 
Sbjct: 218 NVTSDLNRKNVTCWAE 233

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 59.4 bits (144), Expect = 5e-12
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 19/122 (15%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDG 70
           L I  +    +G YRCS  N       + ++ L  +  +      P LS      V   G
Sbjct: 54  LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVF----AKPSLSAQPGPAVSSGG 109

Query: 71  SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS----TSLVINPVGREDRGIYQCIARRS 126
               QC+      G    A +K+G   P +        S  I  V     G Y+C +  S
Sbjct: 110 DVTLQCQ---TRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSS 166

Query: 127 DG 128
             
Sbjct: 167 RD 168

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 57.4 bits (139), Expect = 5e-12
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPV 111
           ++ V P   +V   G+    CE+     P       I W KDG  +P   S   L++  +
Sbjct: 12  QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQ------IHWMKDGVPLPLPPSPV-LILPEI 64

Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQL 139
           G +D+G Y C+A  S     Q S  + +
Sbjct: 65  GPQDQGTYSCVATHSSHGP-QESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTP 54
           P+L +  +  +D GTY C +++     + +  V + +  P
Sbjct: 56 SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 59.8 bits (144), Expect = 6e-12
 Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 20/132 (15%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV---STPYRVDVNPP-LLSVHLDGSANF 74
             I       +G   C +        + + + V      Y V ++P   + + +      
Sbjct: 66  FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 125

Query: 75  QCEITPYDSGPYLIAWFKDGRQIP----------------GRTSSTSLVINPVGREDRGI 118
            C      +      W     +                   +   ++L I+ V R D+G+
Sbjct: 126 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 185

Query: 119 YQCIARRSDGDV 130
           Y C A       
Sbjct: 186 YTCAASSGLMTK 197

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
            G   +     L I+GVT  D G Y C++S+          ++V
Sbjct: 162 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 60.1 bits (145), Expect = 7e-12
 Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 7/130 (5%)

Query: 11  RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
                           E +    C+             + + +    +V      V    
Sbjct: 55  NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGT 114

Query: 71  SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRS-DGD 129
               +CE  P            +G           L++     ++   + C A     G 
Sbjct: 115 EVTVKCEAHP------RAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQ 168

Query: 130 VAQGSAELQL 139
           +   +   +L
Sbjct: 169 LIHKNQTREL 178

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 9   GPRTRVLGPILAIEGVTAEDSG-TYRCSSSN-IGGEATAE---VRLQVSTPYRVDV--NP 61
            P   +      +   T ED+G ++ CS++  + G+   +     L+V    R+D    P
Sbjct: 133 VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP 192

Query: 62  PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQC 121
              +   +      C+          +   KDG                V R+  G Y C
Sbjct: 193 GNWTWPENSQQTPMCQAWGN--PLPELKCLKDGTFPL-----PIGESVTVTRDLEGTYLC 245

Query: 122 IARRSDGDVAQGSAELQL 139
            AR + G+V   + E+ +
Sbjct: 246 RARSTQGEV---TREVTV 260

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 17  PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           PI     VT +  GTY C + +  GE T EV + V +P
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 22/111 (19%)

Query: 38  NIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQ 96
           + G        L V + P +              +A  +CE+    S    + W+K    
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL----SKMAPVEWWKGHET 57

Query: 97  IP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
           +           G      L I  +  ED G Y C+  +      + SA L
Sbjct: 58  LRDGDRHSLRQDGARCE--LQIRGLVAEDAGEYLCMCGK-----ERTSAML 101

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 28/160 (17%), Positives = 42/160 (26%), Gaps = 41/160 (25%)

Query: 16  GPILAIEGVTAEDSGTYRCSSSNIG-----GEATAEVRLQV---STPYRVDVNPP-LLSV 66
            P L +  V  +D G Y C  +        G     V L+V   +    V V+   ++ V
Sbjct: 89  APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQV 148

Query: 67  HLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------------------------GR 100
                    C  T  D     + W+                                 GR
Sbjct: 149 DEGNDITMTCPCT--DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGR 206

Query: 101 TS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
            S   + +LVI      D G   C      G++       
Sbjct: 207 ASFSGARNLVIRAAKITDAGRVWCELATGQGEL-DADRSS 245

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           L I      D+G   C  +   GE  A+    +
Sbjct: 215 LVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 18/118 (15%), Positives = 27/118 (22%), Gaps = 38/118 (32%)

Query: 57  VDVNPPLLSVHLDGSANFQCEITPYDSGP-YLIAWFKDGRQIP----------------- 98
           V      + VH  G+    C     +     +I+W K                       
Sbjct: 5   VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64

Query: 99  ---------------GRTSST-----SLVINPVGREDRGIYQCIARRSDGDVAQGSAE 136
                          GR S       +L +  V  +D G Y C   +       G   
Sbjct: 65  FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I  V+ ED G Y     +   +   ++ ++V       V+ P++      +A   CE+
Sbjct: 71  LRIYNVSKEDRGDYYMRMLHETED-QWKITMEVYEM----VSKPMIYWECS-NATLTCEV 124

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
              +     +  ++    +    S     ++      R  ++C A 
Sbjct: 125 L--EGTDVELKLYQGKEHL---RSLRQKTMSYQWTNLRAPFKCKAV 165

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 19/131 (14%)

Query: 21  IEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDGSA 72
           I  + +  +G Y C         E +  + L V+  Y      P LS      V      
Sbjct: 64  IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYD----TPTLSVHPGPEVISGEKV 119

Query: 73  NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS----LVINPVGREDRGIYQCIARRSDG 128
            F C +   D+   +    K+GR    +           + PV    RG Y+C    ++ 
Sbjct: 120 TFYCRL---DTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNH 176

Query: 129 DVAQGSAELQL 139
             +  S  ++L
Sbjct: 177 AWSFPSEPVKL 187

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 59.1 bits (142), Expect = 3e-11
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 7/113 (6%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST-PYRVDVNPPLLSVHLDGSANFQCE 77
              E    ++     C S+   G++TA+  L V   P RV++ P      +  +   +C+
Sbjct: 50  KVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQ 109

Query: 78  ITPYDSGPYL-IAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIAR 124
           +        L +   +  +++         +  +  +          + C   
Sbjct: 110 VEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 19  LAIEGVTAEDSGTYRCSSSN-IGGE---ATAEVRLQVSTPYRVDV--NPPLLSVHLDGSA 72
           L ++    ++  ++ CS++  + G+         L+V    R+D    P   +   +   
Sbjct: 329 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 388

Query: 73  NFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
              C+    P       +   KDG                V R+  G Y C AR + G  
Sbjct: 389 TPMCQAWGNP----LPELKCLKDGTF-----PLPIGESVTVTRDLEGTYLCRARSTQG-- 437

Query: 131 AQGSAELQL 139
            + + E+ +
Sbjct: 438 -EVTREVTV 445

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 17  PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           PI     VT +  GTY C + +  GE T EV + V +P
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 57.6 bits (139), Expect = 4e-11
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 18/120 (15%)

Query: 21  IEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDGSA 72
           I+ + A  +G Y+C           +  + L V+  Y      P LS      +    + 
Sbjct: 68  IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLY----GKPFLSADRGLVLMPGENI 123

Query: 73  NFQCEITPYDSGPYLIAWFKDGRQIPGRTSS----TSLVINPVGREDRGIYQCIARRSDG 128
           +  C            +  K+G     +  S     +  + PV     GIY+C    +  
Sbjct: 124 SLTCSSAHI--PFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRS 181

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 57.7 bits (139), Expect = 4e-11
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 22/127 (17%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I  V  +D+G YRC  S  GG     + ++V+ PY       L+   +       C+ 
Sbjct: 82  LQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140

Query: 79  TPYDSGPYL-IAWFK-DGRQIPGRTS-------------STSLVINPVGREDRGIYQCIA 123
             Y   P   + W   D + + G+T+             +++L IN        I+ C  
Sbjct: 141 EGY---PKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT---TTNEIFYCTF 194

Query: 124 RRSDGDV 130
           RR D + 
Sbjct: 195 RRLDPEE 201

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 31/113 (27%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPY---DSGPYLIAWFKDGRQIP-------------- 98
            V V   L  V    +   +C+       D    ++ W  + + I               
Sbjct: 3   TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62

Query: 99  ---GRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
               R           + +L I  V  +D G+Y+C+   S G        +++
Sbjct: 63  SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI--SYGGADYKRITVKV 113

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 54.7 bits (132), Expect = 8e-11
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 17/103 (16%)

Query: 46  EVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPG-- 99
           ++ +       +  N    +  +  S    C  +    P       I WFKD   +    
Sbjct: 2   QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ------IMWFKDNETLVEDS 55

Query: 100 ----RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
               +  + +L I  V +ED G+Y C A    G  A+  A   
Sbjct: 56  GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG-CAKVEAFFI 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L I  V  ED G Y C + ++ G A  E    +   
Sbjct: 66  LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 54.3 bits (131), Expect = 8e-11
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 52  STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--GRT--SSTSLV 107
           S+     V      VH       +C +         I W +DG Q+    RT  +   + 
Sbjct: 2   SSG-SSGVEVESFLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLAESNRTRITGEEVE 57

Query: 108 INPVGREDRGIYQCIARRSDG 128
           +      D G+Y C+     G
Sbjct: 58  VQDSVPADSGLYACVTSSPSG 78

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 52.4 bits (126), Expect = 6e-10
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 6  VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
          +    RTR+ G  + ++     DSG Y C +S+  G  T    + VS
Sbjct: 43 LAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 57.6 bits (139), Expect = 9e-11
 Identities = 27/141 (19%), Positives = 39/141 (27%), Gaps = 27/141 (19%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCS-----SSNIGGEATAEVRLQVSTPYRVDVNPP 62
           P    R+      +  VT   +G Y C      S       +  V + V+  +R     P
Sbjct: 65  PIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHR----KP 120

Query: 63  LLSVHLD------GSANFQCEITPYDSGPYLIAWFKDG---------RQIPGRTSSTSLV 107
            L  H             QC     D         K+G          QI    S  +  
Sbjct: 121 SLLAHPGPLVKSGERVILQCWS---DIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFS 177

Query: 108 INPVGREDRGIYQCIARRSDG 128
           I P+     G Y+C    +  
Sbjct: 178 IGPMMLALAGTYRCYGSVTHT 198

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 19/124 (15%), Positives = 30/124 (24%), Gaps = 21/124 (16%)

Query: 21  IEGVTAEDSGTYRCSSSNIGGEA-------TAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
           I  +    +GTYRC  S               ++ +            P   V    S  
Sbjct: 178 IGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVT 237

Query: 74  FQCEITPYDSGPYLIAWFKDGR---------QIPGRTSSTSLVINPVGREDRGIYQCIAR 124
             C      S   +    ++G          +   RT      + P      G Y+C   
Sbjct: 238 LSCSS---RSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPA--THGGTYRCFGS 292

Query: 125 RSDG 128
               
Sbjct: 293 FRHS 296

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 53.9 bits (130), Expect = 9e-11
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 11/91 (12%)

Query: 52  STPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPGRTSSTSLV 107
            +  ++ V P    +    +   QC       P+        WFK+   +   T     +
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH------YQWFKNELPLTHETKKL-YM 53

Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +  V  E +G Y C              E+ 
Sbjct: 54  VPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVSTP 54
            +  +  V  E  GTY C   N      ++ V + +   
Sbjct: 49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 88

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 41  GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG- 99
           G + +   +Q      +  +   + V    SA F+C I+P +  P  + WF D   +   
Sbjct: 1   GSSGSSGLVQGRRV-HIIEDLEDVDVQEGSSATFRCRISPANYEP--VHWFLDKTPLHAN 57

Query: 100 --------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
                         L +  +  +D G     A    GD  + SA L
Sbjct: 58  ELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GD-QRASAAL 98

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 55.3 bits (132), Expect = 2e-10
 Identities = 21/156 (13%), Positives = 34/156 (21%), Gaps = 39/156 (25%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEA--------------------------TAEVRLQV 51
              +     +  G Y+C  S    +                            A+     
Sbjct: 50  KWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSD 109

Query: 52  STPYRVDVNPPLLSVHLDG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRT--------S 102
                  +      V + G +    C   P       I W  + + I G           
Sbjct: 110 GNEEMGGITQTPYKVSISGTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDE 165

Query: 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
               +      E  G Y C  R S  + A     L+
Sbjct: 166 DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR 201

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 45.7 bits (107), Expect = 9e-07
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 88  IAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
           I WFKDG+ I           +    ++ RG+YQC   ++     Q
Sbjct: 32  ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQ 77

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 54.7 bits (131), Expect = 4e-10
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 17/120 (14%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
             I  V   DSG YRC            + ++V   Y + ++  +L V   G     C+ 
Sbjct: 69  FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASY-MRIDTRILEVPGTGEVQLTCQA 127

Query: 79  TPYDSGPY-LIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDG 128
             Y   P   ++W                     ++ L + P   +    + C+   +  
Sbjct: 128 RGY---PLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKP---QPSRNFSCMFWNAHM 181

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 22/101 (21%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------GRTS----- 102
            V     + +V +  S + +C+          +   +   Q           R +     
Sbjct: 4   TVTAPKEVYTVDVGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQ 61

Query: 103 ----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
                    I  V   D G Y+C+              L +
Sbjct: 62  LPLGKALFHIPSVQVRDSGQYRCLVICGAA---WDYKYLTV 99

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 54.5 bits (131), Expect = 5e-10
 Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 19/125 (15%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDG 70
            +I  +T   +G YRC   +  G  E +  + L V+  Y      P LS      V    
Sbjct: 60  FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYN----KPTLSALPSPVVTSGE 115

Query: 71  SANFQCEITPYDS-------GPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
           +   QC              G + ++W  D +  P         + PV    R + +C  
Sbjct: 116 NVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175

Query: 124 RRSDG 128
            R   
Sbjct: 176 SRRHI 180

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 54.4 bits (131), Expect = 5e-10
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 19/131 (14%)

Query: 21  IEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDGSA 72
           I  + +  +G Y C         E +  + L V+  Y      P LS      V      
Sbjct: 61  IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYD----TPTLSVHPGPEVISGEKV 116

Query: 73  NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS----LVINPVGREDRGIYQCIARRSDG 128
            F C +   D+   +    K+GR    +           + PV    RG Y+C    ++ 
Sbjct: 117 TFYCRL---DTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNH 173

Query: 129 DVAQGSAELQL 139
             +  S  ++L
Sbjct: 174 AWSFPSEPVKL 184

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 52.3 bits (126), Expect = 5e-10
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 70  GSANFQCEITPYDSGPYLIAWFKDGRQIPG--------RTSSTSLVINPVGREDRGIYQC 121
           G   + C+I  YD     + W+   RQ+                L +  + + D G Y+C
Sbjct: 17  GHVKYVCKIENYDQ-STQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75

Query: 122 IARRSDGDVAQGSAELQLGGTR 143
                 G+     AEL + G R
Sbjct: 76  KVVNDYGE-DSSYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L ++ +T  D GTYRC   N  GE ++   L V
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 54.8 bits (131), Expect = 5e-10
 Identities = 20/134 (14%), Positives = 37/134 (27%), Gaps = 27/134 (20%)

Query: 19  LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQV----STPYRVDVNPPLLSVHLDGSAN 73
           L +      D   Y C   +   G A A  RL V               L  +       
Sbjct: 79  LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEI 138

Query: 74  FQCEITPYDSGPYLIAWFKDGRQIPGR---------------------TSSTSLVINPVG 112
             C     +  P  I W+++G+++                        + +++L +    
Sbjct: 139 ATCNSRNGNPAP-KITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRK 197

Query: 113 REDRGIYQCIARRS 126
            +    + C A  S
Sbjct: 198 DDRDASFHCAAHYS 211

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 30/111 (27%)

Query: 57  VDVN-PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK----------------------- 92
           V ++ PPL+ V    S    C  T      Y++ WF                        
Sbjct: 2   VRLSVPPLVEVMRGKSVILDCTPTGTH-DHYMLEWFLTDRSGARPRLASAEMQGSELQVT 60

Query: 93  ----DGRQIPGRTSST-SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
                GR  P +  S   LV+      D   Y C+ R      A+ +A L 
Sbjct: 61  MHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLN 111

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 11/111 (9%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L +  +  ED+G+YR   S       +   L+        +    ++ H     N  CE+
Sbjct: 72  LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR----ILRQLRNIQVTNHSQLFQNMTCEL 127

Query: 79  T-----PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
                           W   G  +   +     V           Y CIA 
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLS--SQPNLTVSWDPRISSEQDYTCIAE 176

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 51.6 bits (124), Expect = 9e-10
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 17/88 (19%)

Query: 61  PPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPGRTS------STSLVINP 110
           P   ++ +DG+A  +C+ T    P       I+W K+G   PGR          +L I  
Sbjct: 15  PANQTLAVDGTALLKCKATGDPLPV------ISWLKEGFTFPGRDPRATIQEQGTLQIKN 68

Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +   D G Y C+A  S G     SA L 
Sbjct: 69  LRISDTGTYTCVATSSSG-ETSWSAVLD 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 5  LVLPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
               PR  +     L I+ +   D+GTY C +++  GE +    L V
Sbjct: 49 FPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 19/87 (21%)

Query: 64  LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP--GRTS------STSLVINPV 111
           ++V+   SA F C+      P       + W + G+ +    R         ++  I+ V
Sbjct: 24  MTVYEGESARFSCDTDGEPVP------TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 77

Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQ 138
              D G Y  +   S+G   +    L 
Sbjct: 78  QASDEGNYSVVVENSEG-KQEAEFTLT 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
             I  V A D G Y     N  G+  AE  L +
Sbjct: 72  FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 26/109 (23%)

Query: 41  GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP-- 98
           G + +  +L+V            L+V     A F+CE++          W+K+G ++   
Sbjct: 1   GSSGSSGQLEVLQD------IADLTVKAAEQAVFKCEVS---DEKVTGKWYKNGVEVRPS 51

Query: 99  --------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
                   GR     LVI+ V  ED G Y  +           S   +L
Sbjct: 52  KRITISHVGRFHK--LVIDDVRPEDEGDYTFVPDGY-----ALSLSAKL 93

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVR---LQVSTP 54
           L I+ V  ED G Y           +A++    ++VS P
Sbjct: 65  LVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGP 103

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 14/82 (17%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--GRTSST------SLVINPVGRED 115
           + V    S +F+C ++   +      W   G+ +    R  +T       LV+      D
Sbjct: 18  MEVLEGESCSFECVLSHESASD-PAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSD 76

Query: 116 RGIYQCIARRSDGDVAQGSAEL 137
            G      R          A L
Sbjct: 77  AGEVVFSVRG-----LTSKASL 93

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 21/96 (21%)

Query: 52  STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRT 101
           S P R   +          +A  QCE++        + W K    +           G  
Sbjct: 6   SGPARFTQDLKTKEASEGATATLQCELSK----VAPVEWKKGPETLRDGGRYSLKQDGTR 61

Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
               L I+ +   D G Y C+     G   + SA L
Sbjct: 62  CE--LQIHDLSVADAGEYSCMC----GQ-ERTSATL 90

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 64  LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP-GRTSST----SLVINPVGRE 114
            +V        QC +     P       I W  +G+ I   R++       L I     E
Sbjct: 21  CAVIEGQDFVLQCSVRGTPVPR------ITWLLNGQPIQYARSTCEAGVAELHIQDALPE 74

Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
           D G Y C+A  + G     SA +
Sbjct: 75  DHGTYTCLAENALG-QVSCSAWV 96

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L I+    ED GTY C + N  G+ +    + V
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 53.5 bits (128), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L + G+  E++G YRC       +A   V+L+V       +         +    + CE 
Sbjct: 84  LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD-QVGMKENEDKYMCES 142

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVI-NPVGREDRGIYQC 121
           + +      I W K  ++ P     +  VI  P  +   G +  
Sbjct: 143 SGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNV 186

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 20/84 (23%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
           + V     A F+ E          + W + G  I           G   +  L +  VG 
Sbjct: 18  VEVAAGSPAVFEAETE---RAGVKVRWQRGGSDISASNKYGLATEGTRHT--LTVREVGP 72

Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
            D+G Y  IA       ++   +L
Sbjct: 73  ADQGSYAVIAGS-----SKVKFDL 91

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 31/133 (23%)

Query: 26  AEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP------------------------ 61
            EDSG Y C +          ++ +V +      +                         
Sbjct: 54  VEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNL 113

Query: 62  -PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQI-PGRTSSTSLVINPVGREDRGIY 119
             +     DGS    C +T        I W KDG  I P   +  +  +    ++ RG Y
Sbjct: 114 VQVDGSRGDGSVLLTCGLTDKT-----IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTY 168

Query: 120 QCIARRSDGDVAQ 132
           QC   +   +  Q
Sbjct: 169 QCQGAKETSNPLQ 181

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 58  DVNPPLLSVHLDG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGR-ED 115
           D       V + G S    C +   ++    + W K+G+++P       LV+      ED
Sbjct: 2   DAENIEYKVSISGTSVELTCPLDSDEN----LKWEKNGQELPQ-KHDKHLVLQDFSEVED 56

Query: 116 RGIYQCIARRSDG 128
            G Y C    S+ 
Sbjct: 57  SGYYVCYTPASNK 69

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 16/86 (18%)

Query: 64  LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG---------RTSSTSLVINPVG 112
           +S+          +++  P    P  ++W+ +GR +                SL+   V 
Sbjct: 15  MSIDEGRFCRMDFKVSGLPA---P-DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
             D G Y C+A+   G+ A  + +L 
Sbjct: 71  ASDAGAYACVAKNRAGE-ATFTVQLD 95

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L  E V A D+G Y C + N  GEAT  V+L V
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I  +T+ D   Y   S NI    T +  L V       V+ P++      +A   CE+
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEM----VSKPMIYWEC-SNATLTCEV 114

Query: 79  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
              +     +  ++    +    S     ++      R  ++C A 
Sbjct: 115 L--EGTDVELKLYQGKEHL---RSLRQKTMSYQWTNLRAPFKCKAV 155

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 50.7 bits (121), Expect = 4e-09
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 17/99 (17%)

Query: 41  GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR 100
           G + +   L V+ P  +  +              +C I      P  IAW      +   
Sbjct: 1   GSSGSSGTLTVNGPPII-SSTQTQHALHGEKGQIKCFIRSTPP-PDRIAWSWKENVLESG 58

Query: 101 TSS--------------TSLVINPVGREDRG-IYQCIAR 124
           TS               ++L I+ + R D   IY C A 
Sbjct: 59  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAW 97

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 50.1 bits (120), Expect = 4e-09
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 16/86 (18%)

Query: 64  LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVG 112
           L+V         C+++  P    P  ++W  DG+ +                SL+I PV 
Sbjct: 19  LTVQEGKLCRMDCKVSGLPT---PD-LSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVT 74

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
             D GIY CIA    G     S EL 
Sbjct: 75  SRDAGIYTCIATNRAG-QNSFSLELV 99

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L IE VT+ D+G Y C ++N  G+ +  + L V+  
Sbjct: 68  LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 49.8 bits (119), Expect = 5e-09
 Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 52  STPYRVDVNPP-LLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRT--SSTSLV 107
           S P  V V      SV       F C           + W +    ++P R    +  L 
Sbjct: 7   SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYT-LVWTRLHNGKLPSRAMDFNGILT 65

Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           I  V   D G Y C        + QG+A L 
Sbjct: 66  IRNVQPSDAGTYVCTGSNMFA-MDQGTATLH 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 47.1 bits (112), Expect = 5e-08
 Identities = 14/45 (31%), Positives = 17/45 (37%)

Query: 7  LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
              R      IL I  V   D+GTY C+ SN+         L V
Sbjct: 52 KLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 49.6 bits (119), Expect = 5e-09
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 19/86 (22%)

Query: 64  LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP--GRTS------STSLVINPV 111
            +V  D  A F  + T    P         W KDG+ I   G+           L I+  
Sbjct: 16  TTVSSDSVAKFAVKATGEPRP------TAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKT 69

Query: 112 GREDRGIYQCIARRSDGDVAQGSAEL 137
              D G+Y C  + S G     S +L
Sbjct: 70  DTSDSGLYTCTVKNSAG-SVSSSCKL 94

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 6  VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          +  G + ++     G  L I      DSG Y C+  N  G  ++  +L +
Sbjct: 47 ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 49.7 bits (119), Expect = 5e-09
 Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 24/108 (22%)

Query: 43  ATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQI--- 97
                 +             P   V          E+    +     + W K+G++I   
Sbjct: 4   HHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL----ADHDAEVKWLKNGQEIQMS 59

Query: 98  --------PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
                    G   +  L I+     D   YQC+         + S EL
Sbjct: 60  GSKYIFESIGAKRT--LTISQCSLADDAAYQCVVGG-----EKCSTEL 100

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.8 bits (119), Expect = 6e-09
 Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS------STSLV 107
            +   P   +V +DG+    C  T  P       I W KDG  +  + S      +  L 
Sbjct: 10  VIRQGPVNQTVAVDGTFVLSCVATGSP----VPTILWRKDGVLVSTQDSRIKQLENGVLQ 65

Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           I      D G Y CIA    G  A  SA ++
Sbjct: 66  IRYAKLGDTGRYTCIASTPSG-EATWSAYIE 95

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 47.5 bits (113), Expect = 6e-08
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 4   LLVLPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
           L+     R + L   +L I      D+G Y C +S   GEAT    ++V       V PP
Sbjct: 48  LVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP-VQPP 106

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 49.4 bits (118), Expect = 7e-09
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 20/93 (21%)

Query: 59  VNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPG---------RTSSTS 105
           +   L +V    +  F+C       P       + W K+G++            R    S
Sbjct: 13  MEKRLHAVPAANTVKFRCPAGGNPMPT------MRWLKNGKEFKQEHRIGGYKVRNQHWS 66

Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           L++  V   D+G Y C+     G     +  L 
Sbjct: 67  LIMESVVPSDKGNYTCVVENEYG-SINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 41.3 bits (97), Expect = 8e-06
 Identities = 11/33 (33%), Positives = 12/33 (36%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L +E V   D G Y C   N  G       L V
Sbjct: 67 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 21/112 (18%)

Query: 41  GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQ 96
           G        +          P    V    S   +C+I+    P       + W ++   
Sbjct: 2   GHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPK------LFWKRNNEM 55

Query: 97  IP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           +             T   +L+I  V ++D G Y   A    G V   +  L 
Sbjct: 56  VQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAG-VTTCNTRLD 106

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L I+ V  +D+G Y  S+ N  G  T   RL V+  
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 19/98 (19%)

Query: 52  STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRT 101
           S+  ++       +V+L      +CEI    S      W K+G  +           GR 
Sbjct: 5   SSGLKILTPLTDQTVNLGKEICLKCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRI 60

Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
               LVI     ED G Y       D       A++ +
Sbjct: 61  HK--LVIANALTEDEGDYVFAP---DAYNVTLPAKVHV 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L I     ED G Y  +        T   ++ V + 
Sbjct: 62 KLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 18/95 (18%)

Query: 52  STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPG--------RTS 102
           S      +  P   V   G   F  E+    + P L + W+K+G++I          +  
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVEL----ADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61

Query: 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
              L IN     D   Y   A    GD  + S EL
Sbjct: 62  QRILFINNCQMTDDSEYYVTA----GD-EKCSTEL 91

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 24/126 (19%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDG 70
            +I  +T + +G YRC   +  G  + +  + L ++  Y    + P LS      V    
Sbjct: 60  FSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAY----SKPTLSALPSPLVTSGK 115

Query: 71  SANFQCEITPYDSGPYLIAWFKDGR---------QIPGRTSSTSLVINPVGREDRGIYQC 121
           S    C+     S        K+           +   +       ++PV     G Y+C
Sbjct: 116 SVTLLCQS---RSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172

Query: 122 IARRSD 127
            +    
Sbjct: 173 FSSHGF 178

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 20/84 (23%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
           + V +  +A+F+ E++          W   G+ +           G+     L+++    
Sbjct: 15  VEVFVGETAHFEIELS---EPDVHGQWKLKGQPLAASPDCEIIEDGKKHI--LILHNCQL 69

Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
              G     A        + +A L
Sbjct: 70  GMTGEVSFQAAN-----TKSAANL 88

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 20/84 (23%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
           L V   G+A  +C ++   S    + W      +           G      LV+  +  
Sbjct: 18  LEVLEGGAATLRCVLS---SVAAPVKWCYGNNVLRPGDKYSLRQEGAMLE--LVVRNLRP 72

Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
           +D G Y C      GD    SA L
Sbjct: 73  QDSGRYSCSF----GD-QTTSATL 91

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 9   GPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
             R  V     L +     +D+GTY C ++N GG  +    L V +
Sbjct: 432 NGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 18/96 (18%)

Query: 52  STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------- 103
           S+   V       + +       +CE++        + WFK+G +I     S        
Sbjct: 5   SSGIMVTKQLEDTTAYCGERVELECEVS---EDDANVKWFKNGEEIIPGPKSRYRIRVEG 61

Query: 104 --TSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
               L+I    + D   Y  +         Q SA+L
Sbjct: 62  KKHILIIEGATKADAAEYSVMT----TG-GQSSAKL 92

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 20/123 (16%)

Query: 21  IEGVTAEDSGTYRCSSSNIGGEATAE---VRLQVSTPYRVDVNPPLLS------VHLDGS 71
           I  +T E +G YRC   +     +     + L V+  Y      P LS      V+  G+
Sbjct: 62  IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAY----IKPTLSAQPSPVVNSGGN 117

Query: 72  ANFQCEITPYDSGPYLI-------AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
              QC+      G  L            + +     +S     + PV    R  Y+C A 
Sbjct: 118 VTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY 177

Query: 125 RSD 127
            S+
Sbjct: 178 DSN 180

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 29/114 (25%)

Query: 41  GEATAEVRLQV--STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY-LIAWFKDGRQI 97
           G + +  ++      P   +V           SA   CE+    +     + W+KDG+++
Sbjct: 1   GSSGSSGKVVFAKEQPAHREV-----QAEAGASATLSCEV----AQAQTEVTWYKDGKKL 51

Query: 98  P----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 141
                      G T    LV+   G+ + G Y C A        Q S  LQ+ G
Sbjct: 52  SSSSKVRVEAVGCTRR--LVVQQAGQAEAGEYSCEAGG-----QQLSFRLQVAG 98

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 20/84 (23%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
             V        +CE++        + W KD + I           G  +   LVI     
Sbjct: 18  QWVAPGEDVELRCELS---RAGTPVHWLKDRKAIRKSQKYDVVCEGTMAM--LVIRGASL 72

Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
           +D G Y C    S     + +A L
Sbjct: 73  KDAGEYTCEVEAS-----KSTASL 91

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           +L I G + +D+G Y C        A+  V  + S P
Sbjct: 64  MLVIRGASLKDAGEYTCEVEASKSTASLHVEEKASGP 100

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 9   GPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
            PR  VL    L    V   D+G Y C  +N+ G + A   L VST
Sbjct: 398 HPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 13/81 (16%)

Query: 53  TPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST-------- 104
           +   +   P  L++     A  +C   P  S    + W      +    S          
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLND 406

Query: 105 -SLVINPVGREDRGIYQCIAR 124
            +L  + V   D G+Y C+  
Sbjct: 407 GTLNFSHVLLSDTGVYTCMVT 427

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 46.5 bits (111), Expect = 9e-08
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 20/87 (22%)

Query: 64  LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQI---PGRTSST------SLVINP 110
            SV           +     P      +++W ++ + +     R +         L I  
Sbjct: 15  QSVREGQDVIMSIRVQGEPKP------VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILA 68

Query: 111 VGREDRGIYQCIARRSDGDVAQGSAEL 137
             R D G Y C A    G   Q  A L
Sbjct: 69  AERGDAGFYTCKAVNEYG-ARQCEARL 94

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L I      D+G Y C + N  G    E RL+V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 48.1 bits (114), Expect = 9e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 13/95 (13%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGG-----EATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
           + I  +   D GTY C            E  AEV L V   +    +     +       
Sbjct: 67  IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT-PSISDFEIPTSNIRR 125

Query: 74  FQCEITPYDSGPY---LIAWFKDGRQIPGRTSSTS 105
             C      SG +    ++W ++G ++    ++ S
Sbjct: 126 IICST----SGGFPEPHLSWLENGEELNAINTTVS 156

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 21/96 (21%)

Query: 65  SVHLDGSANFQC--EITPYDSGPYLIAWFKDGRQI--------------PGRTSST---- 104
           +  +   A   C   ++  +     I W K+ + +                RT       
Sbjct: 5   TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 105 -SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
            S+VI  +   D G Y+C+  + + D  +     ++
Sbjct: 65  LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV 100

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 22/97 (22%)

Query: 52  STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIP----------GR 100
           S           L V   G+A F C+       P   + W K   ++           G 
Sbjct: 6   SGANCFTEELTNLQVEEKGTAVFTCKT----EHPAATVTWRKGLLELRASGKHQPSQEGL 61

Query: 101 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
           T    L I+ + + D   Y C      G  AQ  A+L
Sbjct: 62  TLR--LTISALEKADSDTYTCDI----GQ-AQSRAQL 91

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLV 107
           R  V P    V    SANF C +      P  + W KD R++                L 
Sbjct: 484 RFIVKPYGTEVGEGQSANFYCRVIASSP-PV-VTWHKDDRELKQSVKYMKRYNGNDYGLT 541

Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAEL 137
           IN V  +D+G Y   A+ S G   +    L
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGT-KEEIVFL 570

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
           L I  V  +D G Y   + N  G     V L V+
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 20/86 (23%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST------------SLVINPV 111
             V +        E++        + W K+G ++    S               L+ + V
Sbjct: 18  QQVFVGDRVEMAVEVS---EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDV 74

Query: 112 GREDRGIYQCIARRSDGDVAQGSAEL 137
            +EDRG YQ I         Q  AEL
Sbjct: 75  VQEDRGRYQVITNGG-----QCEAEL 95

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 12/110 (10%)

Query: 27  EDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSG 84
           E      C          A   ++    P RV++ P      +  +    C +       
Sbjct: 61  EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRA 120

Query: 85  PYLIAWFKDGRQIPGRT---------SSTSLVINPVGREDRG-IYQCIAR 124
              +   +  +++  R+          +         RED G  + C A 
Sbjct: 121 SLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAE 170

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
            L  + V  ED G Y C +       T  V L+V   + +  +   L+   D  ++ Q E
Sbjct: 302 DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY-NFTLHGHHDTLNAAADPWSHPQFE 360

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 9/72 (12%)

Query: 60  NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVG 112
                  HL  +   +C+      G   +       Q+  + S+         L    V 
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQ--QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309

Query: 113 REDRGIYQCIAR 124
            ED G+Y C A 
Sbjct: 310 VEDGGVYTCYAM 321

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD 58
            L ++  T  ++G Y   + N  G+   ++         +D
Sbjct: 63  CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 41.3 bits (97), Expect = 8e-06
 Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 13/50 (26%)

Query: 88  IAWFKDGRQIP-------------GRTSSTSLVINPVGREDRGIYQCIAR 124
           + WF +G  +                     L ++     + G Y  IA+
Sbjct: 33  LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAK 82

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 9   GPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
             R  VL    L    VT +D+G Y C  SN  G  TA   L V+
Sbjct: 388 KVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 9/34 (26%), Positives = 12/34 (35%)

Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           +        DSG Y+    N  GE  A   + V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 15/78 (19%)

Query: 71  SANFQCEIT--PYDSGPYLIAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQ 120
           + N + +    P  +      W                    +TS+      R D G Y+
Sbjct: 19  THNLEVDFIGAPDPT----ATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74

Query: 121 CIARRSDGDVAQGSAELQ 138
              +   G+  +   E+ 
Sbjct: 75  LKVKNELGE-DEAIFEVI 91

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 9/129 (6%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGE----ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
           L+I     ED+G+Y                 ++ L+V+          L  +        
Sbjct: 84  LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRL 143

Query: 75  QCEIT-PYDSGPYL-IAWFKDGRQIPGRTSSTS--LVINPVGREDRGIYQCIARRSDGDV 130
            C +    ++GP L  +W  +        ++ S  L + P   +      C  +R    V
Sbjct: 144 SCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQV 203

Query: 131 AQGSAELQL 139
                 +QL
Sbjct: 204 -TTERTVQL 211

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           +  +      DSG Y  S      + TA +R++V
Sbjct: 80  VFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)

Query: 88  IAWFKDGRQIPG-----RTS--STSLVINPVGREDRGIYQCIAR 124
           + W K G  +       RTS   T   +    R D G Y+   +
Sbjct: 56  VVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 26/124 (20%)

Query: 45  AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP-- 98
             +R Q   P R+  +P  L V     A   C+      P       I W+K G ++   
Sbjct: 1   GSLR-QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTP------TIEWYKGGERVETD 53

Query: 99  -------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI 145
                        G      +V     R D G+Y C+AR   G+     A L++    + 
Sbjct: 54  KDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113

Query: 146 KHYN 149
            H++
Sbjct: 114 HHHH 117

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 45.0 bits (106), Expect = 4e-07
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           L I       +G+YRC  S       +   L V
Sbjct: 74  LHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 16/97 (16%), Positives = 23/97 (23%), Gaps = 21/97 (21%)

Query: 61  PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGR-----------------QIPGRT 101
           P    V + GS  F   +        P ++ WFK                        + 
Sbjct: 11  PQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69

Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
               L I        G Y+C     D      +  L 
Sbjct: 70  YLFELHITDAQPAFTGSYRCEVSTKDKF-DCSNFNLT 105

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 20/77 (25%)

Query: 71  SANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQ 120
                CE++      +   W+KDG+++           GR     L++     +D G ++
Sbjct: 27  RVVLTCELS---RVDFPATWYKDGQKVEESELLVVKMDGRKHR--LILPEAKVQDSGEFE 81

Query: 121 CIARRSDGDVAQGSAEL 137
           C               +
Sbjct: 82  CRTEG-----VSAFFGV 93

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 13/84 (15%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIP--GRTS------STSLVINPVGRE 114
             V    S     ++T       +   W K  +QI              + L I    +E
Sbjct: 17  QKVRAGESVELFGKVTGT---QPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 73

Query: 115 DRGIYQCIARRSDGDVAQGSAELQ 138
             G Y  +     G   Q    L 
Sbjct: 74  HCGCYTLLVENKLGS-RQAQVNLT 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 6  VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          +      +V     G  L I     E  G Y     N  G   A+V L V
Sbjct: 48 IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 46.8 bits (110), Expect = 5e-07
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 13/127 (10%)

Query: 5   LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPL 63
           L+LPG   +V            ++     C S+   G++TA+  L V  TP RV++ P  
Sbjct: 42  LLLPGNNRKVYEL------SNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLP 95

Query: 64  LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRG 117
               +  +   +C++          +   +  +++         +  +  +         
Sbjct: 96  SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGA 155

Query: 118 IYQCIAR 124
            + C   
Sbjct: 156 NFSCRTE 162

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 29/127 (22%)

Query: 21  IEGVTAEDSGTYRCS-----SSNIGGEATAEVRLQVSTPYRVDVNPPLLS------VHLD 69
           I  +T + +GTYRC      S       +  + + +   Y      P LS      V   
Sbjct: 67  ISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYE----KPSLSAQPGPTVLAG 122

Query: 70  GSANFQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQ 120
            +    C      S   +    ++G               T      + P      G Y+
Sbjct: 123 ENVTLSCSS---RSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA--THGGTYR 177

Query: 121 CIARRSD 127
           C     D
Sbjct: 178 CFGSFHD 184

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPP 62
           L     T  ++G Y   + N  G A   +       P+ VD   P
Sbjct: 67  LLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 21/108 (19%), Positives = 31/108 (28%), Gaps = 26/108 (24%)

Query: 47  VRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP---- 98
           V L V  P RV     L    L      +  +     P       + W  +G+ +     
Sbjct: 1   VALTVYYPPRVV---SLEEPELRLEHCIEFVVRGNPPP------TLHWLHNGQPLRESKI 51

Query: 99  --------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
                   G  S   L+ N     + G Y  IA+   G  A  +    
Sbjct: 52  IHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG-TANQTINGH 98

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 19  LAIEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL-DGSA 72
           ++I  +T  D+GTY C      S +   ++ A   L V       V     +      + 
Sbjct: 76  ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135

Query: 73  NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
           +F CE   +      + WFK+G ++    ++  
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVD 168

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 3/90 (3%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEAT---AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
             +     +      C  +++  +         L  +      +      V  +   N  
Sbjct: 182 AKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVT 241

Query: 76  CEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
           C++  +      + W ++G      T+ST 
Sbjct: 242 CQVRKFYPQRLQLTWLENGNVSRTETASTV 271

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 7   LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLS 65
           L   ++     +L +   +   +GT  C  S  G      V+L V + P ++ V+P  L 
Sbjct: 49  LGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAAL- 107

Query: 66  VHLDGSANFQCEIT---PYDSGPYLIAWFKDGRQIPGRTS 102
             + G     C      P D      +    G+++ G  +
Sbjct: 108 --VPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQA 145

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 54  PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST---SLVINP 110
           P +V+   P+++V L  S    C +   D G   + W      +    S T    L +  
Sbjct: 7   PLQVEPPEPVVAVALGASRQLTCRLACADRGAS-VQWRGLDTSLGAVQSDTGRSVLTVRN 65

Query: 111 VGREDRGIYQCIA 123
                 G   C+ 
Sbjct: 66  ASLSAAGTRVCVG 78

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L I  VT EDS +    + NI GE ++   L V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 14/77 (18%)

Query: 71  SANFQCEITPYDSGPY-LIAWFKDGRQI---PGRTSST------SLVINPVGREDRGIYQ 120
            A+F+  +      P     W+K+G +I                 LVI  V  ED     
Sbjct: 22  DAHFRVRVVGK---PDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIM 78

Query: 121 CIARRSDGDVAQGSAEL 137
             A    G+     A L
Sbjct: 79  VKAINIAGE-TSSHAFL 94

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L     T +D G Y   ++N  G  +   RL V   
Sbjct: 68  LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 21/88 (23%)

Query: 64  LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPGRTS----------STSLVIN 109
             +       F C +     P       I WFKDG+QI  ++           + SL   
Sbjct: 18  YKIFEGMPVTFTCRVAGNPKPK------IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 71

Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAEL 137
               +D G Y  +A    G     +  L
Sbjct: 72  ASTLDDDGNYTIMAANPQG-RISCTGRL 98

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 18/98 (18%), Positives = 24/98 (24%), Gaps = 16/98 (16%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST----------- 104
           ++ V P   S       +F C        P   AW  D   +                  
Sbjct: 12  QITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGEL 71

Query: 105 -----SLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
                 L +  V     G YQC+     G      A L
Sbjct: 72  MEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           L I     +DSGTYR   +N  GEA+    L V+  
Sbjct: 66  LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 19/79 (24%)

Query: 71  SANFQCEIT----PYDSGPYLIAWFKDGRQIP--GRTSST------SLVINPVGREDRGI 118
           +  F   +             + W+ +G ++    +   T      +L I     +D G 
Sbjct: 25  NTRFILNVQSKPTA------EVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGT 78

Query: 119 YQCIARRSDGDVAQGSAEL 137
           Y+ +     G  A   A L
Sbjct: 79  YRAVCTNYKG-EASDYATL 96

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           + I       +G YRC  +      +    L+V   
Sbjct: 77  MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 112

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 21/97 (21%)

Query: 61  PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQ-----------------IPGRT 101
           P   +V +     F  ++        P  I WFK                        R 
Sbjct: 14  PQGGTVKVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72

Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            +  + I        G Y+C     D      S +L+
Sbjct: 73  YTFEMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLE 108

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 19/110 (17%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP---------------GR 100
            ++    + S    GS   QC ++   +    + W +  + +                 R
Sbjct: 6   TIETTGNI-SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64

Query: 101 TSST---SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKH 147
            +      L +  +   D G Y CI          G   L++  +   +H
Sbjct: 65  VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEH 114

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 19  LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVSTP 54
           L ++ +T  D+G Y C   +   G  T  + L+V   
Sbjct: 73  LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 42.8 bits (100), Expect = 4e-06
 Identities = 15/64 (23%), Positives = 23/64 (35%)

Query: 2   EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
             L    G   +     L I+GVT  D G Y C++S+          ++V     V    
Sbjct: 59  RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 118

Query: 62  PLLS 65
            + S
Sbjct: 119 GMES 122

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 17/91 (18%)

Query: 55  YRVDVNPP-LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------------- 98
           Y V ++P   + + +       C      +      W     +                 
Sbjct: 8   YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67

Query: 99  -GRTSSTSLVINPVGREDRGIYQCIARRSDG 128
             +   ++L I+ V R D+G+Y C A     
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 98

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 26/112 (23%)

Query: 35  SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKD 93
           SS + G + ++ +   V    +V V     +          CE+      P+  + W KD
Sbjct: 2   SSGSSGTDVSSWI---VYPSGKVYV-----AAVRLERVVLTCEL----CRPWAEVRWTKD 49

Query: 94  GRQIP--------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
           G ++            +   LV+  V  ED G Y C       D    S  +
Sbjct: 50  GEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DD-ESASFTV 96

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 43.5 bits (102), Expect = 6e-06
 Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 35/114 (30%)

Query: 45  AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITP-YDSGPYLIAWFKDGRQIP----- 98
           A+++  V  P         +   +   A+  C + P   +    + W     +       
Sbjct: 1   ADLQFSVLGP------SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 54

Query: 99  --------------GRTSST---------SLVINPVGREDRGIYQCIARRSDGD 129
                         GRTS           +L I+ V   D G Y C  +  D  
Sbjct: 55  DGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY 108

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 19/119 (15%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
           L I  VTA DSG Y C   +  G+   +  +++            +  + DG  + +C  
Sbjct: 85  LRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRS 142

Query: 79  TPYDSGPYLIAWFKD-GRQIPGRTS------------STSLVINPVGREDRGIYQCIAR 124
           T +   P  I W  + G  IP   +            + S+++            C  R
Sbjct: 143 TGWYPQPQ-IQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG---SSGEGVSCTIR 197

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
           L I+ V   D G Y C   +   +  A V L+V  P+   +NP     H   
Sbjct: 87  LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW-INPGRSRSHHHH 137

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 41.9 bits (98), Expect = 7e-06
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 8   PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPL 63
           P     V    L +   T  ++G Y   ++N  G+A+A +       P+  +   P+
Sbjct: 54  PAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPI 110

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 15/52 (28%)

Query: 88  IAWFKDGRQIP---------------GRTSSTSLVINPVGREDRGIYQCIAR 124
           + W  +G  +                       L +N     + G Y  +A 
Sbjct: 32  LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           ++I+ +  ED+GTY C +SN           +V
Sbjct: 92  ISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 36/120 (30%)

Query: 30  GTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGP 85
           G+      +     ++ +  + S        P      + GS    CE      P     
Sbjct: 2   GSSHHHHHH-----SSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVP----- 51

Query: 86  YLIAWFKDGRQIP---------------------GRTSSTSLVINPVGREDRGIYQCIAR 124
             I W+ +G+                         + +++++ I+ +  ED G Y+C A 
Sbjct: 52  -EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRAS 110

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 21/123 (17%)

Query: 21  IEGVTAEDSGTYRCS-----SSNIGGEATAEVRLQVSTPYRVDV--NPPLLSVHLDGSAN 73
           I  +  + +GTYRC      S       +  + + ++  Y        P  +V    S  
Sbjct: 66  IGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVT 125

Query: 74  FQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIAR 124
             C      S   +    ++G               T      + P      G Y+C   
Sbjct: 126 LSCSS---RSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA--THGGTYRCFGS 180

Query: 125 RSD 127
             D
Sbjct: 181 FRD 183

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 14/97 (14%), Positives = 22/97 (22%), Gaps = 10/97 (10%)

Query: 49  LQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-----TSS 103
           L        +V   +L+     S    C           + W                  
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTC-PGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59

Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 140
             L++  V   D G Y C           G+  L + 
Sbjct: 60  RRLLLRSVQLHDSGNYSCYR----AGRPAGTVHLLVD 92

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 4/110 (3%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP--LLSVHLDGSANFQC 76
             +  V     GTY  +      +    + L V  P +V + P     +   +      C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315

Query: 77  EITP-YDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR-GIYQCIAR 124
            ++  Y SG   + W   G        +         R    G       
Sbjct: 316 LVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGH 365

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           + +  +   D GTY+C      G A  ++ L V
Sbjct: 91  INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR----VDVNPPLLSVHLDGSANF 74
           L +      +  TY+C  ++             ++  R    V                 
Sbjct: 180 LPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTL 239

Query: 75  QCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
            C I  +      + W  +  Q+P    ST+
Sbjct: 240 ACLIQNFMPEDISVQWLHNEVQLPDARHSTT 270

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 19/89 (21%)

Query: 50  QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQI----------PG 99
           +V            ++V   G+A   C +    +    + W    +Q             
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDN 59

Query: 100 RTSST-------SLVINPVGREDRGIYQC 121
           R           S+ ++ V   D G Y C
Sbjct: 60  RIELVRASWHELSISVSDVSLSDEGQYTC 88

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} Length = 254

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 21/123 (17%)

Query: 19  LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
           L I  V AED G Y C   +      G     E++   + P  V + PP       G A+
Sbjct: 115 LKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 173

Query: 74  FQCEITPYDSGPYLIAWFKDGR--------QIPGRTS-------STSLVINPVGREDRGI 118
             C +  +      + W  DG             + S       S++L +     E    
Sbjct: 174 VVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS 233

Query: 119 YQC 121
           Y C
Sbjct: 234 YTC 236

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N Length = 113

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 26/111 (23%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS------------- 102
           RVD  P  ++     S    C +           W+   R+  G  +             
Sbjct: 2   RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWY---RKKSGEGNEESISKGGRYVET 58

Query: 103 ------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL----GGTR 143
                 S SL IN +  ED G Y+C    + G         +      GT 
Sbjct: 59  VNSGSKSFSLRINDLTVEDGGTYRCGLGVAGGYCDYALCSSRYAECGDGTA 109

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} Length = 253

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 15/116 (12%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEV------RLQVSTPYRVDVNPPLLSV------ 66
           L ++        T  C+SS      T ++      +L V    + +V PP ++V      
Sbjct: 76  LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK-NVFPPEVAVFEPSEA 134

Query: 67  --HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
                  A   C  T +      ++W+ +G+++    S+    +      +   Y 
Sbjct: 135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYA 190

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 19/77 (24%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQI----------PGRTSST-------SL 106
           ++V    +   +C  +        + W                   +           S+
Sbjct: 11  ITVEEGQTLTLKCVTS--LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSI 68

Query: 107 VINPVGREDRGIYQCIA 123
            +  V  +D G+Y+C+ 
Sbjct: 69  TVPNVTLQDEGVYKCLH 85

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 22/155 (14%), Positives = 39/155 (25%), Gaps = 46/155 (29%)

Query: 19  LAIEGVTAEDSGTYRC---SSSNIGGEATAEVRLQVSTPYRVDVN--------------- 60
           + +  +   DSG Y C     +       +   L V+       +               
Sbjct: 81  MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVT 140

Query: 61  --PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK----------------DGRQIPGR-- 100
                +S+ +  +    C         Y+  W+K                +     GR  
Sbjct: 141 QAQSSVSMPVRKAVTLNCLYETSWWSYYI-FWYKRLPSKEMIFLIRQGSDEQNAKSGRYS 199

Query: 101 ------TSSTSLVINPVGREDRGIYQCIARRSDGD 129
                   S +L I+ +  ED   Y C A      
Sbjct: 200 VNFKKAAKSVALTISALQLEDSAKYFC-ALGESLT 233

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H Length = 256

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 36/140 (25%)

Query: 24  VTAEDSGTYRCSSSNIGGEATAEV-----RLQVSTPYRVDVNPPLLSVHLDGSANFQC-- 76
           +T+EDS  Y C+  +  G +  +       + VS+   +   P  L V L   A+  C  
Sbjct: 86  LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRS 145

Query: 77  -EITPYDSGPYLIAWFKDGRQIPGR-----------------------TSST--SLVINP 110
            +   + +G   + W+    Q PG+                        S T  +L I+ 
Sbjct: 146 SQSIVHSNGNTYLEWYL---QKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR 202

Query: 111 VGREDRGIYQCIARRSDGDV 130
           V  ED G+Y C         
Sbjct: 203 VEAEDLGVYYCFQGSHVPYT 222

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 Length = 234

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 21/124 (16%)

Query: 19  LAIEGVTAEDSGTYRCSSSNI-------GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
           LAI G+ +ED   Y C++ +        GG     V  Q      V + PP         
Sbjct: 93  LAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 152

Query: 72  ANFQCEITPYDSGPYLIAWFKDGRQIP------------GRTSSTS--LVINPVGREDRG 117
           A   C I+ +  G   +AW  DG  +                 + S  L + P   +   
Sbjct: 153 ATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHR 212

Query: 118 IYQC 121
            Y C
Sbjct: 213 SYSC 216

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} Length = 279

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEV------RLQVSTPYRVDVNPPLL-------S 65
           L +     EDS  Y CS+ ++   A  E       RL V+   +    P +         
Sbjct: 102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAE 161

Query: 66  VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
           +     A   C  T +      ++W+ +G+++    S+    +      +   Y 
Sbjct: 162 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYS 216

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 22/108 (20%), Positives = 31/108 (28%), Gaps = 29/108 (26%)

Query: 61  PPLLSVHLDGSANFQCEITPYDS-GPYLIAWFK----------------DGRQIP---GR 100
           P  ++    G    QC   P       L+ W                  D  Q     GR
Sbjct: 8   PESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGR 67

Query: 101 TS-------STSLVINPVGREDRGIYQC--IARRSDGDVAQGSAELQL 139
                      SL IN +  +DR  Y C    +  DG+       ++L
Sbjct: 68  LKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQV 51
           L + G+  ED G Y C       G  + ++ L+V
Sbjct: 81  LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N Length = 121

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 25/110 (22%), Positives = 34/110 (30%), Gaps = 25/110 (22%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS------------- 102
           RVD  P  ++     S    C +           W+   R+ PG  +             
Sbjct: 2   RVDQTPQRITKETGESLTINCVVRDSRCVLSTGYWY---RKPPGSRNEESISDGGRYVET 58

Query: 103 ------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL---GGTR 143
                 S SL IN +  +D G Y+C      G      A L     GGT 
Sbjct: 59  VNRGSKSFSLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYGGGTV 108

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L Length = 252

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 19  LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
           L I  V AED G Y C  ++      G     E++   + P  V + PP       G A+
Sbjct: 111 LRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 169

Query: 74  FQCEITPYDSGPYLIAWFKDGRQIPG 99
             C +  +      + W  DG +   
Sbjct: 170 VVCFLNNFYPKDINVKWKIDGSERQN 195

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQV 51
           LA+ G+T ED G Y C  +    G       L+V
Sbjct: 95  LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.89
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.89
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.88
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.88
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.88
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.87
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.87
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.87
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.87
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.87
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.87
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.87
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.87
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.87
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.87
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.87
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.86
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.86
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.86
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.86
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.86
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.86
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.86
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.86
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.86
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.86
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.86
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.86
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.85
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.85
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.85
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.85
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.85
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.85
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.85
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.85
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.85
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.84
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.84
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.84
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.84
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.84
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.83
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.83
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.83
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.83
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.83
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.83
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.83
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.82
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.82
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.82
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.82
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.81
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.81
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.81
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.81
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.81
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.81
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.81
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.81
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.81
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.8
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.8
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.8
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.8
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.8
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.8
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.8
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.79
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.79
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.79
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.79
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.79
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.79
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.79
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.79
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.79
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.79
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.78
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.78
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.78
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.78
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.78
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.78
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.77
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.77
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.77
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.77
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.77
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.77
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.77
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.77
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.76
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.76
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.76
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.76
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.76
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.76
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.76
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.76
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.76
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.75
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.75
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.75
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.74
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.74
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.74
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.74
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.74
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.74
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.74
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.74
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.73
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.73
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.73
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.73
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.73
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.73
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.73
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.73
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.73
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.72
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.72
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.72
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.71
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.71
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.71
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.71
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.71
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.71
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.71
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.71
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.71
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.7
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.7
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.7
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.7
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.7
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.7
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.7
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.69
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.69
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.69
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.69
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.69
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.69
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.69
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.69
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.68
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.68
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.68
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.68
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.68
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.67
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.67
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.67
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.67
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.67
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.67
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.66
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.66
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.66
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.66
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.65
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.65
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.65
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.65
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.65
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.64
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.64
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.64
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.64
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.64
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.63
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.63
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.63
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.63
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.63
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.63
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.63
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.62
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.62
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.62
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.62
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.61
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.61
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.61
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.61
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.61
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.61
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.61
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.61
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.61
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.6
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.6
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.6
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.6
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.6
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.59
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.59
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.59
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.59
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.59
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.59
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.58
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.58
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.58
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.58
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.58
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.58
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.57
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.57
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.57
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.57
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.57
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.56
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.56
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.56
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.55
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.55
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.54
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.54
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.54
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.53
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.53
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.53
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.53
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.52
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.52
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.52
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.52
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.52
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.51
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.51
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.5
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.49
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.49
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.48
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.48
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.48
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.48
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.48
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.47
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.47
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.47
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.46
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.46
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.46
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.46
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.46
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.46
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.45
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.45
1he7_A	126	High affinity nerve growth factor receptor; transf	99.45
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.45
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.45
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.44
2ens_A	96	Advanced glycosylation END product-specific recept	99.44
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.44
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.43
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.43
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.43
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.43
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.43
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.43
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.43
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.43
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.42
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.42
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.42
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.42
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.41
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.41
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.41
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.4
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.4
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.39
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.38
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.38
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.37
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.37
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.37
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.37
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.36
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.36
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.36
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.35
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.34
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.34
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.34
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.33
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.33
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.33
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.32
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.32
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.32
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.31
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.31
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.31
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.31
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.31
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.31
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.3
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.3
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.3
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.29
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.29
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.29
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.29
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.29
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.27
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.27
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.26
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.26
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.26
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.26
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.25
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.25
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.23
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.22
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.22
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.22
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.21
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.21
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.21
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.21
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.2
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.2
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.2
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.2
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.19
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.18
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.18
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.17
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.16
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.16
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.16
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.15
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.15
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.15
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.14
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.14
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.11
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.1
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.1
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.1
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.09
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.09
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.08
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.06
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.06
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.05
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	99.02
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.01
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.0
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.99
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.99
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.98
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.97
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.97
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.97
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.96
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.96
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.96
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.96
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	98.95
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.95
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.94
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.94
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.94
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.94
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.93
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.93
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.93
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.92
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.92
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.91
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.9
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.9
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.89
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.88
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.87
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.87
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.86
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.86
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.86
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.86
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.85
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.84
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.84
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.83
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.82
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.81
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.81
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.8
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.8
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.8
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.8
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.8
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.79
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.79
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.78
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.78
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.78
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.77
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.77
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.76
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.76
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.76
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.76
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.76
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.75
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.75
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	98.75
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.75
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.74
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.74
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.74
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.74
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.73
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.73
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.73
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.73
1xt5_A	135	Variable region-containing chitin-binding protein	98.73
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.72
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.72
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.72
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.72
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.71
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.71
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.71
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.71
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.7
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.7
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	98.7
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.69
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.69
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.69
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.68
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.67
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.66
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.66
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.66
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.66
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.66
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.66
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.66
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.66
3khq_A	133	B-cell antigen receptor complex-associated protei	98.65
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.65
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.65
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.64
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.64
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.64
1he7_A	126	High affinity nerve growth factor receptor; transf	98.64
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.63
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.63
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.63
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.63
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.63
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.62
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.62
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.61
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.61
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.6
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.59
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.59
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.59
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.59
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.58
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.58
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.58
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.57
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.57
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.57
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.57
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.57
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.57
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.57
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.57
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.57
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.56
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.56
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.56
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.55
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.55

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.89  E-value=1.1e-21  Score=120.72  Aligned_cols=132  Identities=24%  Similarity=0.342  Sum_probs=108.5

Q ss_pred             CCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCC
Q psy11131          9 GPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSG   84 (150)
Q Consensus         9 ~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~   84 (150)
                      +.++.+..  ..|.|.+++..|+|.|+|.+.+..+. ......|.|..+|.+...+....+.+|+.+.|.|.+. .|   
T Consensus        52 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---  128 (192)
T 2iep_A           52 DTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNP---  128 (192)
T ss_dssp             CTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEES---
T ss_pred             CccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccC---
Confidence            45666554  56999999999999999999987666 4566788888888877777778889999999999999 88   


Q ss_pred             CcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         85 PYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        85 ~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      .+.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.|..|...+..+.|.|..+|
T Consensus       129 ~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          129 KPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             CCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            889999999887765432     45799999999999999999999998544677889888765

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.89  E-value=6.1e-22  Score=133.95  Aligned_cols=121  Identities=28%  Similarity=0.425  Sum_probs=107.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      +.|.|.+++.+|+|.|+|.+.|..|.......|.|..+|.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++.
T Consensus       258 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P---~p~i~W~k~g~  334 (384)
T 3kld_A          258 GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRP---KPTYRWLKNGD  334 (384)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEES---CCEEEEEETTE
T ss_pred             cEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccC---CCeEEEEECCE
Confidence            689999999999999999999999998888999999888877777778899999999999999 99   99999999998


Q ss_pred             ccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         96 QIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        96 ~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      .+....+    ...|.|..+..+|.|.|.|.|.|..| .....+.|.|.+
T Consensus       335 ~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G-~~~~~a~L~V~~  383 (384)
T 3kld_A          335 PLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG-VIFSSAELSVIA  383 (384)
T ss_dssp             ECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEC-
T ss_pred             ECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCc-eEEeceEEEEec
Confidence            8755433    45899999999999999999999999 678888888764

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.88  E-value=7.4e-22  Score=123.18  Aligned_cols=122  Identities=20%  Similarity=0.270  Sum_probs=97.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~   94 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+.....+.|.|..+|.....+....+.+|+.+.|.|.+ . .|   .+.+.|++++
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p---~~~v~W~~~~  160 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSL---PLQFEWQKLS  160 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCS---SCEEEEEECS
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCC---CCEEEEEECC
Confidence            67999999999999999999998888888889999877654332222236789999999999 6 88   8999999954


Q ss_pred             c--ccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         95 R--QIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        95 ~--~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      .  .+.....    ...|.|.++..+|.|.|.|.+.|..| .....+.|.|..|
T Consensus       161 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g-~~~~~~~l~V~~P  213 (214)
T 3jz7_A          161 DSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVG-SDQCMLRLDVVPP  213 (214)
T ss_dssp             TTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSC-EEEEEEEECCBCC
T ss_pred             CCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCC-cEEEEEEEEEeCC
Confidence            3  2221111    56899999999999999999999999 5778888888744

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.88  E-value=4.3e-21  Score=129.57  Aligned_cols=126  Identities=34%  Similarity=0.600  Sum_probs=110.3

Q ss_pred             CCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc
Q psy11131          8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY   86 (150)
Q Consensus         8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~   86 (150)
                      .+.++....+.|.|.+++.+|+|.|+|.+.|..|..+..+.|.|..++.+...+....+.+|+.+.|.|.+. .|   .+
T Consensus       261 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p---~p  337 (388)
T 2v5m_A          261 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP---IK  337 (388)
T ss_dssp             CSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEEC---CC
T ss_pred             ccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEecccc---CC
Confidence            345666666899999999999999999999999988888999999888777777778889999999999999 88   89


Q ss_pred             EEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         87 LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        87 ~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      .+.|++++..+...  ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus       338 ~i~W~~~g~~i~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V  387 (388)
T 2v5m_A          338 TVSWMKDGKAIGHS--ESVLRIESVKKEDKGMYQCFVRNDRE-SAEASAELKL  387 (388)
T ss_dssp             EEEEEETTEECSCC--SSEEEESSCCGGGCEEEEEEEECSSC-EEEEEEEEEE
T ss_pred             eEEEEECCEECccC--CCEEEEecCChhhCEEEEEEEEcCCC-cEEEEEEEEe
Confidence            99999999887654  46899999999999999999999999 6777777765

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.88  E-value=6.8e-21  Score=119.16  Aligned_cols=127  Identities=29%  Similarity=0.459  Sum_probs=102.2

Q ss_pred             CeEEEcCC-CCCCCeEEEEEeccCCcceeEEEEEEEecC-------ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE
Q psy11131         17 PILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQVSTP-------YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL   87 (150)
Q Consensus        17 ~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~   87 (150)
                      ..|.|.++ +.+|+|.|+|.+.+..+.....+.|.|...       |.+...+....+.+|+.+.|.|.+. .|   .+.
T Consensus        63 ~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~p~  139 (212)
T 2yd6_A           63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNP---DPE  139 (212)
T ss_dssp             EEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSS---CCE
T ss_pred             eEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCC---CCe
Confidence            46999999 599999999999998888888888998754       4555666667788999999999999 88   899


Q ss_pred             EEEeecCcccCCCc---c--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131         88 IAWFKDGRQIPGRT---S--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus        88 ~~w~~~~~~~~~~~---~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      +.|++++..+....   .        ...|.|.++..+|.|.|.|.+.|..|...+..+.|.+..++...
T Consensus       140 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~~  209 (212)
T 2yd6_A          140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHH  209 (212)
T ss_dssp             EEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             EEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccccc
Confidence            99999988775431   1        37899999999999999999999999766778888888776543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.87  E-value=5.1e-21  Score=135.29  Aligned_cols=125  Identities=26%  Similarity=0.491  Sum_probs=109.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++.
T Consensus       347 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P---~p~v~W~k~g~  423 (570)
T 3b43_A          347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP---PFQVSWHKDKR  423 (570)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSS---SCCCEEEETTE
T ss_pred             EEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCC---CCEEEEEECCE
Confidence            579999999999999999999999998999999999998888777778888999999999999 99   89999999998


Q ss_pred             ccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         96 QIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        96 ~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .+.....        ...|.|.++..+|.|.|.|.|.|..| .....+.|.|..+|..
T Consensus       424 ~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~v~~~P~~  480 (570)
T 3b43_A          424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG-SDTCVGSITLKAPPRF  480 (570)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC-EEEEEEEEEECCCCEE
T ss_pred             ECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCC-eEEEEEEEEeccCCcc
Confidence            7765433        24788999999999999999999999 5777888888877653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.87  E-value=1.1e-20  Score=122.72  Aligned_cols=120  Identities=28%  Similarity=0.504  Sum_probs=105.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      ..|.|.+++.+|+|.|+|.+.+..|.....+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++.
T Consensus       155 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~~~v~W~~~~~  231 (284)
T 2rik_A          155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP---PFQVSWHKDKR  231 (284)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSS---CCEEEEEETTE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecC---CCEEEEEECCE
Confidence            579999999999999999999998888889999999988877777777889999999999999 88   89999999988


Q ss_pred             ccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         96 QIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        96 ~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      .+.....        ...|.|.++..+|.|.|.|.+.|..| .....+.|.|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~  283 (284)
T 2rik_A          232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG-SYTCVGSITLK  283 (284)
T ss_dssp             EECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEC
T ss_pred             ECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCC-ceeEEEEEEEc
Confidence            7654432        25789999999999999999999999 57777888775

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.87  E-value=4.8e-21  Score=129.83  Aligned_cols=130  Identities=29%  Similarity=0.436  Sum_probs=111.9

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL   87 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~   87 (150)
                      .++.... +.|.|.+++.+|+|.|+|.+.|..|..+....|.|..+|.+...+....+.+|+.+.|.|.+. .|   .+.
T Consensus       267 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~p~  343 (403)
T 3laf_A          267 KKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKP---VPT  343 (403)
T ss_dssp             SSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEES---CCE
T ss_pred             ceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeecc---CCE
Confidence            3444444 789999999999999999999998888899999999888888777778888999999999999 88   899


Q ss_pred             EEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         88 IAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        88 ~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      +.|++++..+.....     ...|.|..+..+|.|.|.|.+.|..| .....+.|.|.+||
T Consensus       344 v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~P~  403 (403)
T 3laf_A          344 VNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAG-NAQSSAQLIVPKPA  403 (403)
T ss_dssp             EEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEECCCC-
T ss_pred             EEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCc-eEEEEEEEEEeCCC
Confidence            999999987754432     45799999999999999999999999 68888899888765

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.87  E-value=1.3e-20  Score=117.59  Aligned_cols=133  Identities=17%  Similarity=0.227  Sum_probs=104.1

Q ss_pred             cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec---------------------CceEEeC
Q psy11131          6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST---------------------PYRVDVN   60 (150)
Q Consensus         6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---------------------~~~~~~~   60 (150)
                      +..+.++.+..    ..|.|.+++.+|+|.|+|.+.+..+.....+.|.|..                     ++.....
T Consensus        44 i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  123 (212)
T 2r15_A           44 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL  123 (212)
T ss_dssp             CCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBC
T ss_pred             ccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccC
Confidence            34445555433    3499999999999999999999877777666666542                     2233344


Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDV  130 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~  130 (150)
                      +....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++..+|.|.|.|.+.|..| .
T Consensus       124 ~~~~~v~~g~~~~l~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g-~  199 (212)
T 2r15_A          124 PDVVTIQEGKALNLTCNVWGDP---PPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG-S  199 (212)
T ss_dssp             CSEEEEETTCCEEEEEEEECSS---CCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE-E
T ss_pred             CCcEEEccCCeEEEEEEEcCCC---CceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCC-c
Confidence            5567889999999999999 89   899999999887765432         24899999999999999999999999 5


Q ss_pred             eeeeEEEEEcCc
Q psy11131        131 AQGSAELQLGGT  142 (150)
Q Consensus       131 ~~~~~~l~v~~~  142 (150)
                      ....+.|.|..|
T Consensus       200 ~~~~~~l~V~~P  211 (212)
T 2r15_A          200 ETSDFTVSVFIP  211 (212)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEEEEEEEEEcc
Confidence            777888887654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.87  E-value=1.6e-20  Score=115.53  Aligned_cols=119  Identities=24%  Similarity=0.239  Sum_probs=100.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee--c
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK--D   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~--~   93 (150)
                      +.|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++  +
T Consensus        56 ~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~  131 (190)
T 2wv3_A           56 MEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP---HPEWMWRKKEN  131 (190)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSS---CCEEEEEEEET
T ss_pred             EEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccC---CCceEEEEcCC
Confidence            67999999999999999999998 888888999999988887777777899999999999999 89   89999999  5


Q ss_pred             CcccCC---Ccc--------eeeEEEccCC-CCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         94 GRQIPG---RTS--------STSLVINPVG-REDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        94 ~~~~~~---~~~--------~~~l~~~~~~-~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      +..+..   ...        ...|.|.++. .+|.|.|.|.+.|..| .....+.|.|.
T Consensus       132 g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g-~~~~~~~l~V~  189 (190)
T 2wv3_A          132 GVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG-SASVSTVLRVR  189 (190)
T ss_dssp             TEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSC-EEEEEEEEEEE
T ss_pred             CceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCC-cceeEEEEEEE
Confidence            554421   111        2379999999 7999999999999999 57777777764

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.87  E-value=1.1e-20  Score=118.23  Aligned_cols=133  Identities=25%  Similarity=0.372  Sum_probs=106.5

Q ss_pred             CCCceEEeC-----CeEEEcCCCC-CCCeEEEEEeccCCcc-eeEEEEEEEecC-------ceEEeCCCcEEEecCCcEE
Q psy11131          8 PGPRTRVLG-----PILAIEGVTA-EDSGTYRCSSSNIGGE-ATAEVRLQVSTP-------YRVDVNPPLLSVHLDGSAN   73 (150)
Q Consensus         8 ~~~~~~~~~-----~~l~i~~~~~-~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~-------~~~~~~~~~~~~~~g~~~~   73 (150)
                      .+.++.+..     ..|.|.+++. .|+|.|+|.+.+..+. .+..+.|.|...       |.+...+....+.+|+.+.
T Consensus        50 ~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~  129 (212)
T 2yd1_A           50 TQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL  129 (212)
T ss_dssp             TSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEE
T ss_pred             CcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEE
Confidence            445555532     4799999999 9999999999998877 778888998864       5666666677888999999


Q ss_pred             EEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         74 FQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        74 l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      |.|.+. .|   .+.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.|..|...+..+.|.|.+.+
T Consensus       130 l~C~~~g~p---~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          130 MTCKAIGNP---TPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             ECCEEECSS---CCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEeccCC---CCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            999999 88   899999999887764322     45899999999999999999999999433445788887653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.87  E-value=1e-20  Score=117.74  Aligned_cols=132  Identities=22%  Similarity=0.288  Sum_probs=101.9

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEEEecC---ceEEeCCCcEEEecCCcEEEEEEecCCCC
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQVSTP---YRVDVNPPLLSVHLDGSANFQCEITPYDS   83 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~---~~~~~~~~~~~~~~g~~~~l~C~~~~p~~   83 (150)
                      ..|+.+.. ++|.|.+++.+|+|.|+|.+.+.. +.......|.|..+   +.+...+..  +.+|+.+.|.|.+..+  
T Consensus        62 ~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~--  137 (208)
T 3r4d_A           62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDI--  137 (208)
T ss_dssp             CSSEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCT--
T ss_pred             cceeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCC--
Confidence            34555555 689999999999999999999874 55667778888754   344444333  7889999999998844  


Q ss_pred             CCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         84 GPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        84 ~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                       ++.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|..|...+..+.|.|..+|.-
T Consensus       138 -pp~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          138 -GANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             -TCEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             -CCceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence             569999999887764432      3679999999999999999999999987888899988877643

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.87  E-value=1.7e-20  Score=115.56  Aligned_cols=120  Identities=28%  Similarity=0.368  Sum_probs=101.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe---cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK   92 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~---~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~   92 (150)
                      ..|.|.+++..|+|.|+|.+.+..+.......|.|.   .+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++
T Consensus        63 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~  139 (194)
T 2a38_A           63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP---TPVVKFYR  139 (194)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEES---CCEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEec---CCeEEEEE
Confidence            479999999999999999999988887778888887   455566666677889999999999999 88   88999999


Q ss_pred             cCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         93 DGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        93 ~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      ++..+.....        ...|.|.++..+|.|.|.|.+.|..| .....+.|.|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~  194 (194)
T 2a38_A          140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG-RATSTAELLVQ  194 (194)
T ss_dssp             TTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTE-EEEEEEEEEEC
T ss_pred             CCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCC-ceEEEEEEEEC
Confidence            9887764433        23789999999999999999999998 57777777763

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=1.3e-20  Score=117.50  Aligned_cols=132  Identities=26%  Similarity=0.393  Sum_probs=104.0

Q ss_pred             CCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCc--ceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEE-ec-CCC
Q psy11131          7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE-IT-PYD   82 (150)
Q Consensus         7 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~-~~-~p~   82 (150)
                      ..+.|+.+...+|.|.+++.+|+|.|+|.+.+..|  .....+.|.|..+|.....+....+.+|+.+.|.|. .. .| 
T Consensus        55 ~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-  133 (212)
T 1f97_A           55 PYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP-  133 (212)
T ss_dssp             GGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBS-
T ss_pred             cccCcEEeeceeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcC-
Confidence            34577777779999999999999999999998765  456778888887765543333456789999999999 56 88 


Q ss_pred             CCCcEEEEeecCc-ccCCCc---------------ceeeEEEccCCCCCCceEEEEEEeCCCCc-eeeeEEEEEcC
Q psy11131         83 SGPYLIAWFKDGR-QIPGRT---------------SSTSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGG  141 (150)
Q Consensus        83 ~~~~~~~w~~~~~-~~~~~~---------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~-~~~~~~l~v~~  141 (150)
                        .+.+.|++++. .+....               ....|.|.++..+|.|.|.|.+.|..|.. .+..+.|.|.+
T Consensus       134 --~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          134 --PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             --CCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             --CCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence              89999999988 664321               14679999999999999999999999843 36677777764

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.87  E-value=1.6e-21  Score=121.46  Aligned_cols=109  Identities=14%  Similarity=0.172  Sum_probs=87.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      ..|.|.+++.+|+|.|+|.+.|..|..+..+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .|.+.|.+++.
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P---~P~v~W~~~~~  145 (203)
T 4fa8_A           69 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFP---HPHVQWLMPEG  145 (203)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEES---CCEEEECCC--
T ss_pred             EEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCC---CCEEEEEECCe
Confidence            469999999999999999999998988999999999887776666556677899999999999 99   99999987654


Q ss_pred             ccCCC----cc-----e---eeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         96 QIPGR----TS-----S---TSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        96 ~~~~~----~~-----~---~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+...    .+     .   ..+.+.++..+|.|.|+|.|.|..|
T Consensus       146 ~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G  190 (203)
T 4fa8_A          146 VEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE  190 (203)
T ss_dssp             ----------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSC
T ss_pred             eecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCC
Confidence            33211    11     2   3345568889999999999999999

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.86  E-value=6.3e-21  Score=118.90  Aligned_cols=123  Identities=16%  Similarity=0.293  Sum_probs=97.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~   94 (150)
                      +.|.|.+++.+|+|.|+|.+.+.  ..+..+.|.|..++.+...+. ..+.+|+.+.|.|.+.  .|   .+.+.|++++
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p---~~~v~W~k~g  127 (204)
T 3sgj_C           54 SSYFIDAATVDDSGEYRCQTQLS--TLSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTA---LHKVTYLQNG  127 (204)
T ss_dssp             SEEEESSCCGGGCEEEEEEETTS--BCCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCC---CEEEEEEETT
T ss_pred             cEEEEecccccCCEEEEEEeCCC--cccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCC---CceEEEEECC
Confidence            68999999999999999999874  345567788887766555444 5678999999999997  46   7899999998


Q ss_pred             cccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         95 RQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      ..+........|.|.++..+|.|.|.|.+.|..+...+..+.|.|.++|+.
T Consensus       128 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~  178 (204)
T 3sgj_C          128 KGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV  178 (204)
T ss_dssp             EEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             cEeecccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCC
Confidence            876433336789999999999999999999965546777889998876543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.86  E-value=2.2e-20  Score=115.33  Aligned_cols=120  Identities=25%  Similarity=0.385  Sum_probs=99.6

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCC-----CcEEEecCCcEEEEEEec-CCCCCCcEEEEe
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP-----PLLSVHLDGSANFQCEIT-PYDSGPYLIAWF   91 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~-----~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~   91 (150)
                      .|.|.+++.+|+|.|+|.+.+..+.....+.|.|..++.+...+     ....+.+|+.+.|.|.+. .|   .+.+.|+
T Consensus        63 ~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~  139 (197)
T 2j8h_A           63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP---DPVITWQ  139 (197)
T ss_dssp             EEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEES---CCEEEEE
T ss_pred             EEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecC---CCcEEEE
Confidence            89999999999999999999988888888889988765543322     345678899999999999 88   8999999


Q ss_pred             ecCcccCCCcc--------eeeEEEcc-CCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         92 KDGRQIPGRTS--------STSLVINP-VGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        92 ~~~~~~~~~~~--------~~~l~~~~-~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      +++..+.....        ...|.+.+ +..+|.|.|.|.+.|..| ..+..+.|.|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g-~~~~~~~l~V~d  197 (197)
T 2j8h_A          140 KGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG-IDQKTVELDVAD  197 (197)
T ss_dssp             ESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTE-EEEEEEEEEEEC
T ss_pred             ECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCC-cEeEEEEEEEeC
Confidence            99887654332        36888999 999999999999999999 577788887753

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.86  E-value=4.9e-20  Score=113.74  Aligned_cols=118  Identities=16%  Similarity=0.243  Sum_probs=98.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCccee-EEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~   93 (150)
                      +.|.|.+++..|+|.|+|.+.+..+... ..+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .+ .+.|+++
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~~v~W~~~  144 (195)
T 2c5d_C           68 SQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPP---EPVDLLWLQD  144 (195)
T ss_dssp             EEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSS---CCCEEEEEES
T ss_pred             cEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCC---CCCEEEEEEC
Confidence            4799999999999999999999766543 34889999888888777778899999999999999 88   88 9999999


Q ss_pred             CcccCCCc---ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         94 GRQIPGRT---SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        94 ~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +..+....   ....|.|.++.  |.|.|.|.+.|..|...+..+.|.|
T Consensus       145 ~~~~~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          145 AVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             SCBSSSSTTSSCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CEeccCCCCcCCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            88776443   25788888876  7899999999999843347888888

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.86  E-value=1.6e-19  Score=117.20  Aligned_cols=126  Identities=27%  Similarity=0.472  Sum_probs=107.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCC-CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP-PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~   94 (150)
                      ..|.|.+++..|+|.|+|.+.+..+..+..+.|.|..+|.+.... ....+.+|+.+.|.|.+. .|   .+.+.|++++
T Consensus        61 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p---~~~v~W~~~~  137 (284)
T 2rik_A           61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP---EIKVLWYKDE  137 (284)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSS---CCEEEEEETT
T ss_pred             EEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeC---CCEEEEEECC
Confidence            689999999999999999999988888888999999887765543 345678999999999999 88   8999999998


Q ss_pred             cccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131         95 RQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus        95 ~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      ..+.....        ...|.|.++..+|.|.|.|.+.|..| .....+.|.|..+|...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~~  196 (284)
T 2rik_A          138 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG-SASSSTSLKVKEPPVFR  196 (284)
T ss_dssp             EECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC-EEEEEEEEEEECCCBCC
T ss_pred             EECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCC-ceeEEEEEEEecCCcce
Confidence            87654432        46799999999999999999999988 57788888888776543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.86  E-value=2.5e-20  Score=126.32  Aligned_cols=121  Identities=20%  Similarity=0.331  Sum_probs=106.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      +.|.|.+++.+|+|.|+|.+.|..|.....+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++.
T Consensus       275 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p---~p~v~W~~~g~  351 (404)
T 3p3y_A          275 KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNP---KPTVQWMVNGE  351 (404)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEES---CCEEEEEETTE
T ss_pred             ceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccC---CCceEEEECCE
Confidence            789999999999999999999998988889999999988888778878899999999999999 88   89999999988


Q ss_pred             ccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         96 QIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        96 ~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      .+.....       ...|.|.++..+|.|.|.|.+.|..| .....+.|.|.+
T Consensus       352 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~d  403 (404)
T 3p3y_A          352 PLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG-YLLANAFVSVLD  403 (404)
T ss_dssp             EGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTE-EEEEEEEEEEC-
T ss_pred             ecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCC-cEEEEEEEEEEe
Confidence            7654321       45799999999999999999999999 677888887764

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.86  E-value=4.5e-20  Score=115.30  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=87.6

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe---------------------cCceEEeCCCcEEEecCCcEEEEE
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---------------------TPYRVDVNPPLLSVHLDGSANFQC   76 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~~~~~~~g~~~~l~C   76 (150)
                      +|.|.+++.+|+|.|+|.+.|  |.......+.+.                     .+|.+.... ...+.+|+.+.|.|
T Consensus        62 ~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C  138 (207)
T 3rbs_A           62 EMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKC  138 (207)
T ss_dssp             EEEESCCCGGGCEEEEEEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEE
Confidence            699999999999999999998  444444443321                     123332222 35678999999999


Q ss_pred             Eec-C-CCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         77 EIT-P-YDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        77 ~~~-~-p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      .+. . |   .|.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|..| ..+..+.|..
T Consensus       139 ~v~g~~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~L~~  205 (207)
T 3rbs_A          139 KVANIKK---ETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG-KDKSRLKLVD  205 (207)
T ss_dssp             EEESCCT---TCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTE-EEEEEEEECC
T ss_pred             EEeCCCC---CCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCC-EEEEEEEEec
Confidence            998 7 8   999999999987754322      34699999999999999999999999 5666666643

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.86  E-value=2.6e-20  Score=131.71  Aligned_cols=132  Identities=23%  Similarity=0.371  Sum_probs=109.9

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-   79 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-   79 (150)
                      ++..+.++.+..    .+|.|.++..+|+|.|+|.+.|..|.....+.|.|..+|.+...+....+.+|+.+.|.|.+. 
T Consensus       424 ~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g  503 (570)
T 3b43_A          424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEG  503 (570)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEES
T ss_pred             ECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEec
Confidence            344555655543    479999999999999999999999999999999999998888777777788999999999999 


Q ss_pred             CCCCCCcEEEEeecCcccCC-Ccc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         80 PYDSGPYLIAWFKDGRQIPG-RTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        80 ~p~~~~~~~~w~~~~~~~~~-~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      .|   .+.+.|++++..+.. ...        ...|.|..+..+|.|.|.|.|.|..| ..+..+.|.|.
T Consensus       504 ~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G-~~~~~a~L~V~  569 (570)
T 3b43_A          504 AE---PISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAG-TQECFATLSVL  569 (570)
T ss_dssp             CS---SCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSC-EEEEEEEECCB
T ss_pred             CC---CCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCc-EEEEEEEEEEe
Confidence            88   899999998754422 111        46899999999999999999999999 67788888764

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.86  E-value=6.8e-20  Score=123.73  Aligned_cols=132  Identities=24%  Similarity=0.383  Sum_probs=109.9

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCC
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDS   83 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~   83 (150)
                      +.|+.+..    +.|.|.++..+|+|.|+|.+.|..|..+..+.|.|..+|.+...+....+.+|+.+.|.|.+. .|  
T Consensus        51 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p--  128 (389)
T 2jll_A           51 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNP--  128 (389)
T ss_dssp             SSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEES--
T ss_pred             CCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecC--
Confidence            46666652    689999999999999999999998988889999999888776655555778999999999999 89  


Q ss_pred             CCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         84 GPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        84 ~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                       .+.+.|.+++..+.....          ...|.|.++...|.|.|.|.+.|..| .....+.+.+..+|.
T Consensus       129 -~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G-~~~~~~~l~v~~~P~  197 (389)
T 2jll_A          129 -PASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG-TRFQEYILALADVPS  197 (389)
T ss_dssp             -CCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTE-EEEEEEEEEECCCCC
T ss_pred             -CCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCC-cEEEEEEEEecCCCC
Confidence             899999999887754321          34699999999999999999999999 466677777766553

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.86  E-value=8.3e-20  Score=112.58  Aligned_cols=131  Identities=15%  Similarity=0.261  Sum_probs=104.6

Q ss_pred             CCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeC---CCcEEEecCCcEEEEEEec
Q psy11131          7 LPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN---PPLLSVHLDGSANFQCEIT   79 (150)
Q Consensus         7 ~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~---~~~~~~~~g~~~~l~C~~~   79 (150)
                      ..+.++.+..    .+|.|.+++.+|+|.|+|.+.+..+.......|.|..+|.....   +....+.+|+.+.|.|.+.
T Consensus        49 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~  128 (197)
T 3lcy_A           49 IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYI  128 (197)
T ss_dssp             CCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEE
T ss_pred             CCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEe
Confidence            3445555444    27999999999999999999998888888888888876655432   2445678999999999999


Q ss_pred             -CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCC-CCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         80 -PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGR-EDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        80 -~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~-~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                       .|   .+.+.|++++..+.....        ...|.|.++.. +|.|.|.|.+.|..| .....+.|.|.+
T Consensus       129 ~~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~  196 (197)
T 3lcy_A          129 GRP---VPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG-TVDAILDVEIQD  196 (197)
T ss_dssp             EES---CCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSC-EEEEEEEEEEEC
T ss_pred             eee---CCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcC-ceEEEEEEEEec
Confidence             88   899999999887765433        26799999985 899999999999999 577888887754

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.86  E-value=5.1e-20  Score=112.46  Aligned_cols=119  Identities=24%  Similarity=0.414  Sum_probs=99.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~   93 (150)
                      +.|.|.+++.+|+|.|+|.+.+..+. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .+ .+.|+++
T Consensus        60 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~~v~W~~~  136 (182)
T 1rhf_A           60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPP---EPVTIVWWRG  136 (182)
T ss_dssp             EEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSS---SCCEEEEEET
T ss_pred             EEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCC---CCCEEEEEcC
Confidence            57999999999999999999987654 4567889999988888877778899999999999999 88   88 9999999


Q ss_pred             CcccCCCcc-eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         94 GRQIPGRTS-STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        94 ~~~~~~~~~-~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      +..+..... ...|.+.++  +|.|.|.|.+.|..|...+.++.|.|.
T Consensus       137 ~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          137 TTKIGGPAPSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             TEECSCSEESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CeECCCCCCCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            887754432 567888877  588999999999998433457777763

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.86  E-value=6.2e-20  Score=119.41  Aligned_cols=138  Identities=21%  Similarity=0.306  Sum_probs=106.8

Q ss_pred             cCCCCceEEeC-CeEEEcCCCCCCCeEEEEEec-cCCcceeEEEEEEEe----cCceEEeCCCcEEEecCCcEEEEEEec
Q psy11131          6 VLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSS-NIGGEATAEVRLQVS----TPYRVDVNPPLLSVHLDGSANFQCEIT   79 (150)
Q Consensus         6 ~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~   79 (150)
                      +..+.++.+.. +.|.|.+++.+|+|.|+|.+. +..+..+..+.|.|.    .+|.+...+....+.+|+.+.|.|.+.
T Consensus       132 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~  211 (289)
T 3ejj_X          132 VLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSAT  211 (289)
T ss_dssp             CCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEE
T ss_pred             cCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeC
Confidence            34556666655 789999999999999999998 444556677888887    466666666666678999999999998


Q ss_pred             --CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcccc
Q psy11131         80 --PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKH  147 (150)
Q Consensus        80 --~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~~  147 (150)
                        .|   .+.+.|++++..+.....          ...|.|.++..+|.|.|.|.+.|..| ....++.|.+..+++...
T Consensus       212 ~~~p---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~s~~L~~~~~~~~~~  287 (289)
T 3ejj_X          212 NAEV---GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVG-TRTATMNFQVVESHHHHH  287 (289)
T ss_dssp             ESSS---CCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSC-EEEEEEEEECC-------
T ss_pred             CCCC---ceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCC-CccccEEEEEEecccccc
Confidence              57   899999999887654211          56899999999999999999999999 688888888877766543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.86  E-value=4.3e-20  Score=116.07  Aligned_cols=122  Identities=19%  Similarity=0.258  Sum_probs=102.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEecC---------------ceEEeCCCcEEEecCCcEEEEEEec-
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTP---------------YRVDVNPPLLSVHLDGSANFQCEIT-   79 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~---------------~~~~~~~~~~~~~~g~~~~l~C~~~-   79 (150)
                      ..|.|.+++..|+|.|+|.+.+..+.. +..+.|.|...               +.+...+....+.+|+.+.|.|.+. 
T Consensus        65 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g  144 (218)
T 3k0w_A           65 SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVG  144 (218)
T ss_dssp             SEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEB
T ss_pred             CEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecc
Confidence            689999999999999999999876643 55577888754               4556666777889999999999999 


Q ss_pred             CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         80 PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        80 ~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      .|   .+.+.|++++..+.... ...|.|.++...|.|.|.|.+.|..|...+..+.|.|.+.
T Consensus       145 ~p---~~~v~W~~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          145 SP---IPHYQWFKNELPLTHET-KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             SS---CCEEEEEETTEECTTCC-SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred             cC---CCeEEEEECCEECCCCC-CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence            88   89999999998776554 5689999999999999999999988855778888888764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.85  E-value=7.5e-20  Score=112.16  Aligned_cols=129  Identities=22%  Similarity=0.374  Sum_probs=100.7

Q ss_pred             CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEecCceEEeCCC--cEEEecCCcEEEEEEec-CC
Q psy11131          8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVSTPYRVDVNPP--LLSVHLDGSANFQCEIT-PY   81 (150)
Q Consensus         8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~~-~p   81 (150)
                      .+.++.... ++|.|.+++.+|+|.|+|.+.+..+.  ......+.|..+|.+...+.  ...+.+|+.+.|.|.+. .|
T Consensus        47 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p  126 (189)
T 2v5t_A           47 SDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP  126 (189)
T ss_dssp             CCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEES
T ss_pred             cCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCC
Confidence            345666555 78999999999999999999887543  23456677777666655443  34556799999999999 88


Q ss_pred             CCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         82 DSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        82 ~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                         .+.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|..| .....+.|.|.
T Consensus       127 ---~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~  187 (189)
T 2v5t_A          127 ---EPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG-EDEKQAFLQVF  187 (189)
T ss_dssp             ---CCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             ---CCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCC-ceeEEEEEEEE
Confidence               889999999887764432      45799999999999999999999998 56677777764

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.85  E-value=5.9e-20  Score=112.91  Aligned_cols=109  Identities=21%  Similarity=0.406  Sum_probs=94.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~   94 (150)
                      ..|.|.+++.+|+|.|+|.+.+.. +.....+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++
T Consensus        62 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~  138 (191)
T 1epf_A           62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL---PPTIIWKHKG  138 (191)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSS---CCEEEEEETT
T ss_pred             eEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCC---CCEEEEEECC
Confidence            689999999999999999999876 456778888888888887777778889999999999999 88   8999999998


Q ss_pred             cccCCCc--c-----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         95 RQIPGRT--S-----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        95 ~~~~~~~--~-----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..+....  .     ...|.|.++..+|.|.|.|.+.|..+
T Consensus       139 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  179 (191)
T 1epf_A          139 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR  179 (191)
T ss_dssp             EEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             EEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecc
Confidence            7764321  1     34899999999999999999999875

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.85  E-value=2.9e-20  Score=121.05  Aligned_cols=136  Identities=22%  Similarity=0.356  Sum_probs=101.5

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEecCceEEeCCC--cEEEecCCcEEEEEEec-CCC
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVSTPYRVDVNPP--LLSVHLDGSANFQCEIT-PYD   82 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~~-~p~   82 (150)
                      +.++.... +.|.|.+++.+|+|.|+|.+.+..+.  ......+.|..+|.+...+.  ...+.+|+.+.|.|.+. .| 
T Consensus       144 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p-  222 (291)
T 2wim_A          144 DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP-  222 (291)
T ss_dssp             CSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBS-
T ss_pred             CceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCC-
Confidence            45555544 78999999999999999999987543  33556777777766554433  23456899999999999 88 


Q ss_pred             CCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccccc
Q psy11131         83 SGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHY  148 (150)
Q Consensus        83 ~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~  148 (150)
                        .+.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|..| .....+.|.|..+++-+.|
T Consensus       223 --~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G-~~~~~~~l~v~~~~~~~~~  291 (291)
T 2wim_A          223 --EPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG-EDEKQAFLQVFVQHHHHHH  291 (291)
T ss_dssp             --CCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTE-EEEEEEEEEC---------
T ss_pred             --CCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCC-ceeeeEEEEEEEeccccCC
Confidence              899999999887764432      46799999999999999999999999 6889999999998876543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.85  E-value=4.1e-20  Score=124.58  Aligned_cols=120  Identities=27%  Similarity=0.471  Sum_probs=106.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++.
T Consensus       257 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~v~W~~~g~  333 (382)
T 1cs6_A          257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKP---RPAVRWLRDGQ  333 (382)
T ss_dssp             SEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEES---CCEEEEEETTE
T ss_pred             cEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeec---CCEEEEEECCE
Confidence            789999999999999999999998888888999999888887777778889999999999999 88   89999999998


Q ss_pred             ccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         96 QIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        96 ~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      .+....+    ...|.|.++..+|.|.|.|.+.|..| .....+.|.|.
T Consensus       334 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~  381 (382)
T 1cs6_A          334 PLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG-TVYASAELTVQ  381 (382)
T ss_dssp             ECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             ECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCC-eEEEEEEEEEe
Confidence            8765543    45799999999999999999999999 57778888775

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.85  E-value=3.3e-20  Score=112.98  Aligned_cols=123  Identities=20%  Similarity=0.262  Sum_probs=97.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~   94 (150)
                      ++|.|.+++.+|+|.|+|.+.+..+  +..+.|.|..++..... ....+.+|+.+.|.|.+.  .|   .+.+.|++++
T Consensus        51 ~~L~i~~v~~~d~G~Y~C~~~~~~~--s~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~g  124 (176)
T 1f2q_A           51 SSLNIVNAKFEDSGEYKCQHQQVNE--SEPVYLEVFSDWLLLQA-SAEVVMEGQPLFLRCHGWRNWD---VYKVIYYKDG  124 (176)
T ss_dssp             SEEEECSCCGGGCEEEEEECTTSSC--CCCEEEEEECSSEEEEE-SCSEEETTSCEEEEEEEGGGCC---EEEEEEEETT
T ss_pred             eEEEEeccceecCEEEEEEcCCccc--cccEEEEEeCcceeecC-CcceeeCCCCEEEEEEecCCCC---ceEEEEEECC
Confidence            7899999999999999999988554  34556777654443332 234677999999999995  66   7899999999


Q ss_pred             cccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         95 RQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      ..+........|.|.++..+|.|.|.|.+.|..+...+..+.|.|.++|..
T Consensus       125 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~  175 (176)
T 1f2q_A          125 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPRE  175 (176)
T ss_dssp             EECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC-
T ss_pred             EEEeeecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCCC
Confidence            887544446789999999999999999999976545677789999888753

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.85  E-value=5.8e-20  Score=121.03  Aligned_cols=129  Identities=16%  Similarity=0.164  Sum_probs=99.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEecCceEEeC-CCcEEEecCCcEEEEEEec-CCCCCCc-EEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVSTPYRVDVN-PPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~   91 (150)
                      ..|.|.+....|.|.|+|.+.|..+.  ......|.|..+|.+... ........|+.+.|.|.+. .|   .| .+.|+
T Consensus       177 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P---~p~~v~W~  253 (313)
T 4fqp_A          177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNP---EPTGYNWS  253 (313)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEES---CCCEEEEE
T ss_pred             eeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCC---CCcEEEEE
Confidence            35889999999999999999986554  345566777777766433 3344566788999999999 88   77 79999


Q ss_pred             ecCcccCCCcc--eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcccccC
Q psy11131         92 KDGRQIPGRTS--STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHYN  149 (150)
Q Consensus        92 ~~~~~~~~~~~--~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~~  149 (150)
                      +++..+.....  ...|.|.++..+|.|.|.|.|.|..| ..+..+.|.|.++||...|.
T Consensus       254 ~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~~PP~~~~~  312 (313)
T 4fqp_A          254 TTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALG-ARQAELTVQVKEGPPHHHHH  312 (313)
T ss_dssp             ETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSC-EEEEEEEEEEECCC------
T ss_pred             ECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCC-cEEEEEEEEEEeCCCCCccC
Confidence            99987754432  56899999999999999999999999 68888999999988876653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=115.25  Aligned_cols=125  Identities=26%  Similarity=0.370  Sum_probs=97.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC----ceE-EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP----YRV-DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~----~~~-~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w   90 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+.......|.|...    +.+ ...+....+.+|+.+.|.|.+. .|   .+.+.|
T Consensus        72 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p---~p~v~W  148 (241)
T 3grw_A           72 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA---QPHIQW  148 (241)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSS---CCEEEE
T ss_pred             eEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCC---CCEEEE
Confidence            68999999999999999999998888888888888752    222 2334566788999999999999 88   889999


Q ss_pred             ee----cCcccCCCcc----------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         91 FK----DGRQIPGRTS----------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        91 ~~----~~~~~~~~~~----------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      ++    ++..+.....                ...|.|.++..+|.|.|.|.+.|..| .....+.|.|.++|..
T Consensus       149 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g-~~~~~~~l~V~~~p~~  222 (241)
T 3grw_A          149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG-VAEKAFWLSVHGPRAA  222 (241)
T ss_dssp             EEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSC-EEEEEEEEEC------
T ss_pred             EEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcc-eEEEEEEEEecCCCCC
Confidence            99    6665543321                34699999999999999999999999 6788899999887654

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.85  E-value=4.1e-20  Score=112.49  Aligned_cols=121  Identities=17%  Similarity=0.281  Sum_probs=95.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      +.|.|.+++.+|+|.|+|.+.+..+  +..+.|.|..++..... ....+.+|+.+.|.|.+. .+.  .+.+.|++++.
T Consensus        54 ~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~k~g~  128 (175)
T 1fnl_A           54 SSYFIDAATVNDSGEYRCQTNLSTL--SDPVQLEVHIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTA--LHKVTYLQNGK  128 (175)
T ss_dssp             SEEEESSCCGGGCEEEEEECSSSCC--CCCEEEEEECSSEEEEC-SCSEEETTCCEEEEEEECTTCC--CEEEEEEETTE
T ss_pred             eEEEEeCCCcccCEEEEEEeeCCcc--cccEEEEEeCCCceeeC-CCceecCCCCEEEEEEcCCCCC--ceEEEEEECCe
Confidence            7899999999999999999998543  45567777755444433 335678999999999998 551  46999999988


Q ss_pred             ccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         96 QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      .+........|.|.++..+|.|.|.|.+.|..+...+..+.|.|.++
T Consensus       129 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          129 DRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             EEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             EccCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence            76433336789999999999999999999987655677788887653

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.84  E-value=2.3e-20  Score=116.05  Aligned_cols=130  Identities=28%  Similarity=0.453  Sum_probs=102.1

Q ss_pred             CCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCc--ceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEe-c-CCCC
Q psy11131          8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI-T-PYDS   83 (150)
Q Consensus         8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~   83 (150)
                      ...|+.....+|.|.+++.+|+|.|+|.+.+..+  ..+..+.|.|..+|.....+....+.+|+.+.|.|.+ . .|  
T Consensus        59 ~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p--  136 (209)
T 1nbq_A           59 YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP--  136 (209)
T ss_dssp             TTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBS--
T ss_pred             ccCceEeeccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCC--
Confidence            4567777779999999999999999999998754  3455677888877665554555568899999999997 6 88  


Q ss_pred             CCcEEEEeecCcccCCCc---------------ceeeEEEccCCCCCCceEEEEEEeCCCCc-eeeeEEEEEc
Q psy11131         84 GPYLIAWFKDGRQIPGRT---------------SSTSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLG  140 (150)
Q Consensus        84 ~~~~~~w~~~~~~~~~~~---------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~-~~~~~~l~v~  140 (150)
                       .+.+.|++++..+....               ....|.|.++..+|.|.|.|.+.|..|.. .+..+.|.|.
T Consensus       137 -~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          137 -PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             -CCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             -CceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence             88999999887665321               14689999999999999999999999843 3555555553

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.84  E-value=2e-19  Score=112.69  Aligned_cols=135  Identities=16%  Similarity=0.186  Sum_probs=94.5

Q ss_pred             CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec--CceEEeCC-CcEEEecCCcEEEEEEec-CC
Q psy11131          8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST--PYRVDVNP-PLLSVHLDGSANFQCEIT-PY   81 (150)
Q Consensus         8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~--~~~~~~~~-~~~~~~~g~~~~l~C~~~-~p   81 (150)
                      .+.++.... ..|.|.+++.+|+|.|+|.+.+..+.. +..+.|.|..  ++.+...+ ....+.+|+.+.|.|.+. .|
T Consensus        54 ~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p  133 (213)
T 2x1w_L           54 DGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTEL  133 (213)
T ss_dssp             CSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECT
T ss_pred             CCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCC
Confidence            334455444 789999999999999999998853332 2336677754  33343333 344789999999999998 65


Q ss_pred             CCCCcEEEEeecCcccCCC----------------cceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         82 DSGPYLIAWFKDGRQIPGR----------------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        82 ~~~~~~~~w~~~~~~~~~~----------------~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      .. .+.+.|++++..+...                .....|.|.++..+|+|.|.|.+.|..| ..+..+.|.|.+.|-
T Consensus       134 ~~-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g-~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          134 NV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEDPI  210 (213)
T ss_dssp             TB-CCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSC-EEEEEEEEEEEC---
T ss_pred             CC-ceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCC-cEEEEEEEEEecccc
Confidence            10 3579999887653211                0134699999999999999999999999 678889999988764

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.84  E-value=5e-20  Score=126.17  Aligned_cols=124  Identities=15%  Similarity=0.157  Sum_probs=94.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCC--CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP--PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~   93 (150)
                      +.|.|.+++.+|+|.|+|.+.|.   ....+.|.|..++.+...+  ....+.+|+.+.|.|.+. .|   .|.+.|+++
T Consensus       290 ~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P---~p~i~W~k~  363 (423)
T 3qs7_E          290 LFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYP---QIRCTWTFS  363 (423)
T ss_dssp             EEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEES---CCEEEEEET
T ss_pred             EEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcC---CCeEEEEEC
Confidence            57999999999999999999997   6778889999887776554  345567899999999999 99   899999999


Q ss_pred             CcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcccc
Q psy11131         94 GRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKH  147 (150)
Q Consensus        94 ~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~~  147 (150)
                      +..+.....    ...+........|.|.|+|.|.|..| ..+.++.|.|.+.|....
T Consensus       364 g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G-~~~~s~~L~v~~~p~~~~  420 (423)
T 3qs7_E          364 RKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA-QFTKMFTLNIRSGTKHHH  420 (423)
T ss_dssp             TEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTE-EEEEEEEEC---------
T ss_pred             CEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCc-eEEEEEEEEEecCCcccc
Confidence            988754431    22232355677899999999999999 688999999998876543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.84  E-value=1.3e-19  Score=122.51  Aligned_cols=118  Identities=23%  Similarity=0.416  Sum_probs=102.2

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeE-EEEEEEecCceEEeCCCc-EEEecCCcEEEEEEec-CCCCCCcEEEEeecC
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATA-EVRLQVSTPYRVDVNPPL-LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~-~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~   94 (150)
                      .|.|.++..+|+|.|+|.+.|..|.... .+.|.|..+|.+...+.. ..+.+|+.+.|.|.+. .|   .+.+.|++++
T Consensus       271 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~v~W~~~g  347 (395)
T 1bih_A          271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP---APNVVWSHNA  347 (395)
T ss_dssp             EEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEES---CCCCEEEETT
T ss_pred             eEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECccc---CCeeEEEECC
Confidence            7999999999999999999998887554 889999988888777766 7789999999999999 88   8899999999


Q ss_pred             cccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         95 RQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        95 ~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ..+.....   ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus       348 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G-~~~~~~~l~V  394 (395)
T 1bih_A          348 KPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHG-DKYFETLVQV  394 (395)
T ss_dssp             EECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTE-EEEEEEEEEE
T ss_pred             EECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCC-CceEEEEEEE
Confidence            87754421   45899999999999999999999999 5777777766

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.84  E-value=2.2e-19  Score=113.16  Aligned_cols=126  Identities=25%  Similarity=0.323  Sum_probs=100.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc----eEEe-CCCcEEEecCCcEEEEEEec-CCCCCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY----RVDV-NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~----~~~~-~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w   90 (150)
                      .+|.|.+++..|+|.|+|.+.+..+.......|.|...+    .+.. .+....+.+|+.+.|.|.+. .|   .+.+.|
T Consensus        76 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~p~v~W  152 (231)
T 3ojm_B           76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA---QPHIQW  152 (231)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSS---CCEEEE
T ss_pred             ceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCC---CCEEEE
Confidence            579999999999999999999988888888888887532    2222 24567788999999999998 88   889999


Q ss_pred             ee----cCcccCCCcc---------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131         91 FK----DGRQIPGRTS---------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus        91 ~~----~~~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      ++    ++..+.....               ...|.|.++...|.|.|.|.+.|..| .....+.|.|..+|...
T Consensus       153 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG-QANQSAWLTVLPKQQAP  226 (231)
T ss_dssp             EEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCC---
T ss_pred             EECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccc-eEeeEEEEEEecCCCCC
Confidence            98    6655432221               24699999999999999999999999 57888999998876543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.83  E-value=5.3e-19  Score=109.26  Aligned_cols=120  Identities=23%  Similarity=0.274  Sum_probs=94.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeE---EEEEEEe-------cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATA---EVRLQVS-------TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGP   85 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~---~~~l~v~-------~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~   85 (150)
                      ++|.|.+++.+|+|.|+|.+.+..+....   ...+.+.       .+|.+...+....+.+|+.+.|.|.+. .|   .
T Consensus        66 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~  142 (201)
T 3s97_C           66 GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP---V  142 (201)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEES---C
T ss_pred             CeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCC---C
Confidence            78999999999999999999986544332   3344443       233444444467788999999999999 88   8


Q ss_pred             cEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         86 YLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        86 ~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      +.+.|++++..+.....    ...|.|.++..+|.|.|.|.+.|..| .....+.|.|.
T Consensus       143 p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~  200 (201)
T 3s97_C          143 PDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRG-KDKHQARIYVQ  200 (201)
T ss_dssp             CEEEEEETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             CceEEEeCCCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCC-ceeeeEEEEEe
Confidence            99999999886654322    56899999999999999999999998 56777787775

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.83  E-value=1.6e-19  Score=126.30  Aligned_cols=126  Identities=18%  Similarity=0.233  Sum_probs=107.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCC---CcEEEecCCcEEEEEEec-CCCCCCcE-EEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP---PLLSVHLDGSANFQCEIT-PYDSGPYL-IAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~---~~~~~~~g~~~~l~C~~~-~p~~~~~~-~~w~   91 (150)
                      +.|.|.+++.+|+|.|+|.+.|..|.....+.|.|..+|.+...+   ....+.+|+.+.|.|.+. .|   .+. +.|+
T Consensus       273 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P---~p~~v~W~  349 (524)
T 2ec8_A          273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP---KPEHQQWI  349 (524)
T ss_dssp             EEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEES---CCCEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecC---CCcEEEEE
Confidence            789999999999999999999998888889999999887776543   357789999999999999 88   787 9999


Q ss_pred             ecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131         92 KDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus        92 ~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      +++..+.....             ...|.|.++..+|.|.|.|.+.|..| .....+.|.|..+|.+.
T Consensus       350 k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~l~V~~~P~i~  416 (524)
T 2ec8_A          350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV-NAAIAFNVYVNTKPEIL  416 (524)
T ss_dssp             SSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSC-EEEEEEEEEECEEEEEE
T ss_pred             ECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCc-eEEEEEEEEEecCCeEe
Confidence            99887654431             35899999999999999999999999 57888999998776543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.83  E-value=7.9e-20  Score=111.46  Aligned_cols=119  Identities=16%  Similarity=0.219  Sum_probs=89.0

Q ss_pred             CCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce--eEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCC
Q psy11131          7 LPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYD   82 (150)
Q Consensus         7 ~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~   82 (150)
                      ..+.|+.+.. ++|.|.+++.+|+|.|.|.+.+..|..  ...+.|.|..++.    .. .....+..+.|.|.+. .| 
T Consensus        50 ~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~----~p-~i~~~~~~v~L~C~~~g~p-  123 (176)
T 1hng_A           50 LKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS----KP-MIYWECSNATLTCEVLEGT-  123 (176)
T ss_dssp             ESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCC----CC-EEEEETTTTEEEEECSSCS-
T ss_pred             CCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCC----CC-EEEecCCcEEEEEEecCCC-
Confidence            3467777754 789999999999999999999987775  6667788876421    11 1122345689999999 88 


Q ss_pred             CCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         83 SGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        83 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                        .|.+.|++++..+....   .+.+..+..+|.|.|.|.|.|..| ..+....|
T Consensus       124 --~p~i~W~~~g~~l~~~~---~~~i~~~~~~d~G~Y~C~a~N~~g-~~~~~~~l  172 (176)
T 1hng_A          124 --DVELKLYQGKEHLRSLR---QKTMSYQWTNLRAPFKCKAVNRVS-QESEMEVV  172 (176)
T ss_dssp             --SCEEEEEETTEEEEEES---SSEEEEECSCCSSCEEEEEEETTE-EEEEEECC
T ss_pred             --CcEEEEEECCEECCCCC---cEEEEEEEccCCeEEEEEEEecCC-Cceecccc
Confidence              89999999988765332   245557778999999999999998 45544443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.83  E-value=4.9e-20  Score=114.87  Aligned_cols=125  Identities=24%  Similarity=0.382  Sum_probs=94.6

Q ss_pred             EEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec-CceEEeCCCcEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecC
Q psy11131         19 LAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST-PYRVDVNPPLLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        19 l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~   94 (150)
                      |.|.+++..|+|.|+|.+.+..+.. +....|.|.. ++.+...+....+.+|+.+.|.|.+ . .|   .+.+.|++++
T Consensus        74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~v~W~~~~  150 (212)
T 2v9r_A           74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHP---EPTISWKKDG  150 (212)
T ss_dssp             CCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEES---CCEEEEEETT
T ss_pred             EEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCC---CCEEEEEECC
Confidence            4455679999999999999877654 4456777764 3334445566788999999999998 6 88   8999999998


Q ss_pred             cccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131         95 RQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus        95 ~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      ..+.....     ...|.|.++..+|.|.|.|.+.|..|...+..+.|.|.++|..+
T Consensus       151 ~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~  207 (212)
T 2v9r_A          151 SPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV  207 (212)
T ss_dssp             EEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             ccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHh
Confidence            87764332     45899999999999999999999998434456899998887654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.83  E-value=2.1e-19  Score=117.08  Aligned_cols=134  Identities=17%  Similarity=0.201  Sum_probs=102.3

Q ss_pred             cCCCCceEEeC-CeEEEcCCCCCCCe-EEEEEeccCCcce-eEEEEEEEe----cCceEEeCCCcEEEecCCcEEEEEEe
Q psy11131          6 VLPGPRTRVLG-PILAIEGVTAEDSG-TYRCSSSNIGGEA-TAEVRLQVS----TPYRVDVNPPLLSVHLDGSANFQCEI   78 (150)
Q Consensus         6 ~~~~~~~~~~~-~~l~i~~~~~~d~G-~Y~C~~~~~~~~~-~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~   78 (150)
                      +..+.++.... +.|.|.++..+|+| .|+|.+.|..+.. +..+.|.|.    .+|.+...+....+.+|+.+.|.|.+
T Consensus       133 l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~  212 (290)
T 2o26_X          133 LPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTI  212 (290)
T ss_dssp             CCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEE
T ss_pred             CCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEE
Confidence            33445555554 78999999999999 9999999975442 345777776    56677666666678899999999999


Q ss_pred             c-CCCCCCcE-EEEeecCccc----CCC-----------cceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         79 T-PYDSGPYL-IAWFKDGRQI----PGR-----------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        79 ~-~p~~~~~~-~~w~~~~~~~----~~~-----------~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      . .|   .+. +.|++++..+    ...           .....|.|.++..+|.|.|.|.+.|..| ..+..+.|.|.+
T Consensus       213 ~g~p---~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g-~~~~~~~l~V~~  288 (290)
T 2o26_X          213 KDVS---TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFG-SANVTTTLKVVE  288 (290)
T ss_dssp             EESS---TTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSC-EEEEEEEECC--
T ss_pred             ecCC---cceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCC-cEEEEEEEEEEe
Confidence            9 88   775 9999988762    111           0156899999999999999999999999 577888888876


Q ss_pred             cC
Q psy11131        142 TR  143 (150)
Q Consensus       142 ~p  143 (150)
                      +|
T Consensus       289 ~P  290 (290)
T 2o26_X          289 KG  290 (290)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.83  E-value=5.3e-19  Score=115.87  Aligned_cols=123  Identities=24%  Similarity=0.377  Sum_probs=102.3

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEe-----CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEe
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV-----NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWF   91 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~-----~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~   91 (150)
                      .|.|.+++.+|+|.|+|.+.|..|.....+.|.|..++.+..     .+....+..|+.+.|.|.+. .|   .+.+.|+
T Consensus        63 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~  139 (305)
T 2nzi_A           63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP---DPVITWQ  139 (305)
T ss_dssp             EEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEES---CCEEEEE
T ss_pred             EEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCC---CCEEEEE
Confidence            899999999999999999999888888888999987655432     22456778999999999999 88   8999999


Q ss_pred             ecCcccCCCcc--------eeeEEEcc-CCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         92 KDGRQIPGRTS--------STSLVINP-VGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        92 ~~~~~~~~~~~--------~~~l~~~~-~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      +++..+.....        ...|.+.+ +...|.|.|.|.+.|..| .....+.+.|.++|.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G-~~~~~~~l~v~~~P~  200 (305)
T 2nzi_A          140 KGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG-IDQKTVELDVADVPD  200 (305)
T ss_dssp             ESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTE-EEEEEEEEEEEBCCC
T ss_pred             ECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCC-ceeeEEEEEEecCCC
Confidence            98877654332        35788888 999999999999999999 577788888876654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.83  E-value=1.2e-19  Score=127.33  Aligned_cols=123  Identities=14%  Similarity=0.149  Sum_probs=99.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCC--cEEEecCCcEEEEEEec-CCCCCCcEEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP--LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~   93 (150)
                      ++|.|.+++.+|+|.|+|.+.|.   ....+.|.|..+|.+...+.  ...+.+|+.+.|.|.+. .|   .|.+.|+++
T Consensus       290 ~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P---~p~i~W~k~  363 (527)
T 3qs9_E          290 LFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYP---QIRCTWTFS  363 (527)
T ss_dssp             EEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEES---CCEEEEEET
T ss_pred             EEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecC---CCEEEEEEC
Confidence            56999999999999999999997   67778889988777665442  35567899999999999 99   899999999


Q ss_pred             CcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131         94 GRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus        94 ~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      +..+.....    ...|.|.++..+|.|.|+|.+.|..| .....+.|.|..+|.+.
T Consensus       364 g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g-~~~~~~~L~V~~~P~i~  419 (527)
T 3qs9_E          364 RKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA-QFTKMFTLNIRRKPQVL  419 (527)
T ss_dssp             TEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTE-EEEEEEEEC--CCCEEE
T ss_pred             CEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCC-cEEEEEEEEEecCCeEE
Confidence            987754332    45799999999999999999999999 57778899888877553

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.82  E-value=7e-19  Score=115.70  Aligned_cols=121  Identities=19%  Similarity=0.286  Sum_probs=98.4

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec--------------------CceE-EeCCCcEEEecCCcEEEEE
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST--------------------PYRV-DVNPPLLSVHLDGSANFQC   76 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~--------------------~~~~-~~~~~~~~~~~g~~~~l~C   76 (150)
                      .|.|.+++.+|+|.|+|.+.|..+.......|.|..                    .+.+ ...+....+.+|+.+.|.|
T Consensus       165 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C  244 (317)
T 2y25_A          165 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC  244 (317)
T ss_dssp             EEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEE
T ss_pred             EEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEE
Confidence            499999999999999999999888777777776541                    1222 2334556788999999999


Q ss_pred             Eec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         77 EIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        77 ~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      .+. .|   .+.+.|++++..+.....         ...|.|.++..+|.|.|.|.+.|..| .....+.|.|..|
T Consensus       245 ~~~g~p---~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~l~V~~P  316 (317)
T 2y25_A          245 NVWGDP---PPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG-SETSDFTVSVFIP  316 (317)
T ss_dssp             EEECSS---CCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTE-EEEEEEEEEEECC
T ss_pred             EEecCC---CCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCC-eEEEEEEEEEEcC
Confidence            999 89   899999999887754432         23899999999999999999999999 6788888888754

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.82  E-value=8.9e-19  Score=114.03  Aligned_cols=126  Identities=19%  Similarity=0.381  Sum_probs=101.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~   94 (150)
                      ..|.|.+++.+|+|.|+|.+.+..+. .+..+.|.|..++.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p---~~~v~W~~~~  138 (291)
T 1qz1_A           62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL---PPTIIWKHKG  138 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSS---CCEEEEEETT
T ss_pred             EEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCC---CCEEEEEECC
Confidence            68999999999999999999998654 5677888888888887777778899999999999999 88   8899999998


Q ss_pred             cccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCC-CceeeeEEEEEcCcCcc
Q psy11131         95 RQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDG-DVAQGSAELQLGGTRNI  145 (150)
Q Consensus        95 ~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g-~~~~~~~~l~v~~~p~~  145 (150)
                      ..+.....       ...|.|.++...|.|.|.|.+.|..+ ......+.+.|..+|.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~  197 (291)
T 1qz1_A          139 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTV  197 (291)
T ss_dssp             SCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEE
T ss_pred             EEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcc
Confidence            76643211       45799999999999999999998764 22345566666655543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=5.5e-19  Score=117.18  Aligned_cols=126  Identities=25%  Similarity=0.351  Sum_probs=101.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC----ceEEe-CCCcEEEecCCcEEEEEEec-CCCCCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP----YRVDV-NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~----~~~~~-~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w   90 (150)
                      .+|.|.+++.+|+|.|+|.+.|..|.....+.|.|...    |.+.. .+....+.+|+.+.|.|.+. .|   .+.+.|
T Consensus       180 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p---~p~v~W  256 (334)
T 1ry7_B          180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA---QPHIQW  256 (334)
T ss_dssp             TEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSS---CEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCC---CCeEEE
Confidence            58999999999999999999998888888888888753    22222 23557788999999999999 88   899999


Q ss_pred             ee----cCcccCCCcc-----------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131         91 FK----DGRQIPGRTS-----------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus        91 ~~----~~~~~~~~~~-----------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      ++    ++..+.....                 ...|.|.++..+|.|.|.|.+.|..| .....+.|.|...|+.+
T Consensus       257 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~~~~~~  332 (334)
T 1ry7_B          257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG-FSHHSAWLVVLPAEEEL  332 (334)
T ss_dssp             EECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSC-CEEEEEEEEEECSCCC-
T ss_pred             EECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCC-eEEEEEEEEEEECCCCc
Confidence            98    5554432211                 13799999999999999999999999 57888999998877654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.82  E-value=9.3e-19  Score=113.94  Aligned_cols=129  Identities=27%  Similarity=0.452  Sum_probs=101.4

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEecCceEEeCCC--cEEEecCCcEEEEEEec-CCC
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVSTPYRVDVNPP--LLSVHLDGSANFQCEIT-PYD   82 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~~-~p~   82 (150)
                      +.++.... +.|.|.+++.+|+|.|+|.+.+..+.  ......|.|..+|.+.....  ...+.+|+.+.|.|.+. .| 
T Consensus       146 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p-  224 (291)
T 1qz1_A          146 DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP-  224 (291)
T ss_dssp             CTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEES-
T ss_pred             CceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeC-
Confidence            34444444 78999999999999999999976433  34566777777776655443  34567899999999999 88 


Q ss_pred             CCCcEEEEeecCcccCCCc----c------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         83 SGPYLIAWFKDGRQIPGRT----S------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        83 ~~~~~~~w~~~~~~~~~~~----~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                        .+.+.|++++..+....    .      ...|.|.++..+|.|.|.|.+.|..| ..+..+.|.|.+
T Consensus       225 --~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~  290 (291)
T 1qz1_A          225 --EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAG-EQDASIHLKVFA  290 (291)
T ss_dssp             --CCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEC
T ss_pred             --CCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCC-ceEEEEEEEEEc
Confidence              89999999988776543    1      35799999999999999999999999 577888888754

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.81  E-value=8.1e-19  Score=115.10  Aligned_cols=123  Identities=22%  Similarity=0.385  Sum_probs=91.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEE-EEEEEe---cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVS---TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~v~---~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~   91 (150)
                      +.|.|.+++.+|+|.|+|.+.|..|..... ..|.|.   .+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|+
T Consensus       164 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~  240 (304)
T 2yd9_A          164 GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSP---MPYVKWM  240 (304)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEES---CCEEEEE
T ss_pred             eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeC---CCEEEEE
Confidence            789999999999999999999987765422 455553   455666666666788999999999999 88   8999999


Q ss_pred             ecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         92 KDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        92 ~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      +++..+.....    ...|.+..+  +|.|.|.|.+.|..| .....+.|.|.+++..
T Consensus       241 ~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G-~~~~~~~l~V~~~~~~  295 (304)
T 2yd9_A          241 QGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLG-VIEAVAQITVKSLPKA  295 (304)
T ss_dssp             ETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTE-EEEEEEEEC-------
T ss_pred             ECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCC-cEEEEEEEEEecCccc
Confidence            99887754432    234555544  689999999999999 6778888888876644

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.81  E-value=1e-18  Score=116.60  Aligned_cols=132  Identities=17%  Similarity=0.211  Sum_probs=102.4

Q ss_pred             CCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEe----CCCcEEEecCCcEEEEEEe-----
Q psy11131          8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV----NPPLLSVHLDGSANFQCEI-----   78 (150)
Q Consensus         8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~----~~~~~~~~~g~~~~l~C~~-----   78 (150)
                      .+.++...++.|.|.+++.+|+|.|+|.+.+..+.....+.|.|..++....    .+....+.+|+.+.|.|..     
T Consensus        70 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  149 (349)
T 4dep_C           70 PENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYF  149 (349)
T ss_dssp             GGGCEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSS
T ss_pred             cCceEeecCCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccc
Confidence            3455666668999999999999999999999888888888899886543221    1234567789999999985     


Q ss_pred             c-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCC-CCc--eeeeEEEEEcCc
Q psy11131         79 T-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSD-GDV--AQGSAELQLGGT  142 (150)
Q Consensus        79 ~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~-g~~--~~~~~~l~v~~~  142 (150)
                      . .|   .+.+.|++++..+.....    ...|.|.++..+|.|.|.|.+.|.. |..  .+..+.+.|..+
T Consensus       150 ~g~p---~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~  218 (349)
T 4dep_C          150 PSSV---KPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS  218 (349)
T ss_dssp             CTTS---CCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             cCCC---CceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEcc
Confidence            4 67   899999999987754322    4579999999999999999999987 422  267777777664

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.81  E-value=2e-18  Score=112.35  Aligned_cols=136  Identities=19%  Similarity=0.342  Sum_probs=102.8

Q ss_pred             CCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-C
Q psy11131          7 LPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-P   80 (150)
Q Consensus         7 ~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~   80 (150)
                      ..+.++.+..    ..|.|.+++.+|+|.|+|.+.+..|.. +..+.|.|..++.+...+....+.+|+.+.|.|.+. .
T Consensus        46 ~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~  125 (291)
T 2wim_A           46 ISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSS  125 (291)
T ss_dssp             CCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCS
T ss_pred             cCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccC
Confidence            3445555543    479999999999999999999987664 466788888777766666677889999999999999 8


Q ss_pred             CCCCCcEEEEeecCcccCCCc--c-----eeeEEEccCCCCCCceEEEEEEeCCCC-ceeeeEEEEEcCcCcc
Q psy11131         81 YDSGPYLIAWFKDGRQIPGRT--S-----STSLVINPVGREDRGIYQCIARRSDGD-VAQGSAELQLGGTRNI  145 (150)
Q Consensus        81 p~~~~~~~~w~~~~~~~~~~~--~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~v~~~p~~  145 (150)
                      |   .+.+.|++++..+....  .     ...|.|.++...|.|.|.|.+.+..+. .....+.+.+..+|.+
T Consensus       126 p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~  195 (291)
T 2wim_A          126 P---APAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI  195 (291)
T ss_dssp             S---CCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCC
T ss_pred             C---CCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCcc
Confidence            8   89999999887654311  1     457999999999999999999998752 2345667777766654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.81  E-value=2.1e-19  Score=111.84  Aligned_cols=126  Identities=13%  Similarity=0.221  Sum_probs=93.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceE-EeCCCcEEEecCCcEEEEEEec-CCCCCC--cEEEEee
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRV-DVNPPLLSVHLDGSANFQCEIT-PYDSGP--YLIAWFK   92 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~~g~~~~l~C~~~-~p~~~~--~~~~w~~   92 (150)
                      ..|.|.+++.+|+|.|.|.+.|..+..+..+.|.|..+|.. ...+. ..+.+|+.+.|.|.+. .+.  .  +.+.|++
T Consensus        54 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p--~~~~~i~W~k  130 (202)
T 1vca_A           54 STLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYP--FDRLEIDLLK  130 (202)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBS--GGGEEEEEEE
T ss_pred             cEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCC--CCCeEEEEEe
Confidence            57999999999999999999998887788889999875532 22222 4578999999999998 430  3  4899999


Q ss_pred             cCcccCCCc----------c--eeeEEEccCCCCCCceEEEEEEeCCCCc------eeeeEEEEEcCcCcc
Q psy11131         93 DGRQIPGRT----------S--STSLVINPVGREDRGIYQCIARRSDGDV------AQGSAELQLGGTRNI  145 (150)
Q Consensus        93 ~~~~~~~~~----------~--~~~l~~~~~~~~~~g~y~C~~~~~~g~~------~~~~~~l~v~~~p~~  145 (150)
                      ++..+....          .  ...|.+.....+|.|.|+|.|.|..+..      ...++.|.|..+|..
T Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~~  201 (202)
T 1vca_A          131 GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN  201 (202)
T ss_dssp             TTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC--
T ss_pred             CCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCCC
Confidence            887543111          1  3345677777788899999999987631      456788888888853

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.81  E-value=1.5e-18  Score=107.40  Aligned_cols=120  Identities=23%  Similarity=0.328  Sum_probs=88.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC-c--ceeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG-G--EATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w   90 (150)
                      +.|.|.+++.+|+|.|+|.+.|.. +  ..+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+...   .+.+.|
T Consensus        58 ~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~---~~~v~W  133 (198)
T 1ugn_A           58 GQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA---FDGFIL  133 (198)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC---CSEEEE
T ss_pred             cEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC---CcEEEE
Confidence            789999999999999999999876 4  345667788876   34444333 2467899999999998733   579999


Q ss_pred             eecCcccCCCc----------ceeeEEEccCCCCCCceEEEEEEeCCCC----ceeeeEEEEEc
Q psy11131         91 FKDGRQIPGRT----------SSTSLVINPVGREDRGIYQCIARRSDGD----VAQGSAELQLG  140 (150)
Q Consensus        91 ~~~~~~~~~~~----------~~~~l~~~~~~~~~~g~y~C~~~~~~g~----~~~~~~~l~v~  140 (150)
                      ++++..+....          ....|.|.++..+|.|.|.|.+.|..+.    ..+..+.|.|.
T Consensus       134 ~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            99987653211          0378999999999999999999997642    23667777764

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.81  E-value=6.2e-19  Score=110.93  Aligned_cols=123  Identities=15%  Similarity=0.217  Sum_probs=92.3

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEe
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWF   91 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~   91 (150)
                      .|.|.+++.+|+|.|+|.+.+..+.  .+..+.|.|.+   +|.+...+ ...+.+|+.+.|.|... .|   .+.+.|+
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~---~~~~~W~  140 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIP---FDRFSLA  140 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSC---CSEEEEE
T ss_pred             EEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCC---CCEEEEE
Confidence            8999999999999999999987543  34456777764   34454444 34678999999999666 77   7899999


Q ss_pred             ecCcccCCCc----ceeeEEEccCCCCCCceEEEEEEeCCC----CceeeeEEEEEcCcCc
Q psy11131         92 KDGRQIPGRT----SSTSLVINPVGREDRGIYQCIARRSDG----DVAQGSAELQLGGTRN  144 (150)
Q Consensus        92 ~~~~~~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~g----~~~~~~~~l~v~~~p~  144 (150)
                      +++..+....    ....|.|.++..+|.|.|.|.+.+...    ...+..+.|.|.+.++
T Consensus       141 k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~~  201 (218)
T 1uct_A          141 KEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIH  201 (218)
T ss_dssp             ETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC----
T ss_pred             ECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCCC
Confidence            9987664321    157899999999999999999997531    2456778898887553

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.81  E-value=3.8e-19  Score=109.97  Aligned_cols=120  Identities=18%  Similarity=0.268  Sum_probs=91.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc--ceeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~   91 (150)
                      +.|.|.+++.+|+|.|+|.+.|..+  ..+..+.|.|..   +|.+...+.. .+.+|+.+.|.|.+..+   .+.+.|+
T Consensus        58 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~---~~~~~w~  133 (196)
T 3p2t_A           58 ARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP---MDTFLLC  133 (196)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE---EEEEEEE
T ss_pred             EEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC---CCEEEEE
Confidence            6799999999999999999999876  345567777764   3444443333 57899999999998844   5689999


Q ss_pred             ecCcccCCCc---------ceeeEEEccCCCCCCceEEEEEEeCCC----CceeeeEEEEEc
Q psy11131         92 KDGRQIPGRT---------SSTSLVINPVGREDRGIYQCIARRSDG----DVAQGSAELQLG  140 (150)
Q Consensus        92 ~~~~~~~~~~---------~~~~l~~~~~~~~~~g~y~C~~~~~~g----~~~~~~~~l~v~  140 (150)
                      +++..+....         ....|.|.++..+|.|.|.|.+.|..+    ...+..+.|.|.
T Consensus       134 k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          134 KERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             ETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             eCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            9887553221         146799999999999999999999865    345666777764

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.81  E-value=9.2e-19  Score=107.17  Aligned_cols=115  Identities=16%  Similarity=0.142  Sum_probs=92.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+    .+.|.|...   .. +....+.+|+.+.|.|.+. .|   .+.+.|++++.
T Consensus        68 ~~L~i~~v~~~D~G~Y~C~~~~~~~----~~~l~V~~~---~~-~~~~~v~~g~~~~l~C~~~~~p---~~~v~W~~~~~  136 (184)
T 2ny1_B           68 FPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGL---TA-NSDTHLLQGQSLTLTLESPPGS---SPSVQCRSPRG  136 (184)
T ss_dssp             CCEEECSCCGGGCEEEEEEETTEEE----EEEEEEEEE---EE-SSCSEEETTCCEEEEEECCTTC---CCEEEEECTTS
T ss_pred             EEEEEecCCHHHCEEEEEEEEcCCC----cEEEEEEEe---cC-CCCceeecCCCEEEEEEcCCCC---CCEEEEEeCCC
Confidence            4599999999999999999988643    455666632   22 3334678999999999998 88   99999998876


Q ss_pred             ccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         96 QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .+..  ....|.|.++..+|.|.|.|.+.|..+ ..+..+.|.|.+.|..
T Consensus       137 ~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~~-~~~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          137 KNIQ--GGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKA  183 (184)
T ss_dssp             CEEE--ESSEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCCC-
T ss_pred             cccc--CceEEEEecCCcCCCeEEEEEEEECCc-eEEEEEEEEEEecCCC
Confidence            5422  257899999999999999999999877 6788889999887753

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.81  E-value=1.2e-18  Score=109.41  Aligned_cols=121  Identities=22%  Similarity=0.374  Sum_probs=87.5

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec-Cc
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD-GR   95 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~-~~   95 (150)
                      +|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..++............+|+.+.|.|.+. .|   .|.+.|+++ +.
T Consensus        81 ~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P---~p~i~W~~~~g~  156 (222)
T 3sbw_C           81 ALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYP---KAEVIWTSSDHQ  156 (222)
T ss_dssp             EEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBS---CCEEEEEETTCC
T ss_pred             EEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCC---CCeEEEEECCCc
Confidence            799999999999999999998 5666777888888654322111112456899999999999 99   899999998 44


Q ss_pred             ccCCCcc-------ee---eEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         96 QIPGRTS-------ST---SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        96 ~~~~~~~-------~~---~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      .+.....       ..   ......+...|.|.|.|.+.|..| .....+.+.|.++|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g-~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          157 VLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP-EENHTAELVIPELP  213 (222)
T ss_dssp             EECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTT-TEEEEEEEECCCC-
T ss_pred             eecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCcc-ceeeEEEEEecCCc
Confidence            4332110       11   112223456889999999999999 57788888887655

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.80  E-value=6.6e-18  Score=111.15  Aligned_cols=128  Identities=18%  Similarity=0.268  Sum_probs=98.7

Q ss_pred             CceEEeCCeEEEcCCCCCCCeEEEEEec-cCCcce---eEEEEEEEe-----cCceEEeCCCc-EEEecCCcEEEEEEec
Q psy11131         10 PRTRVLGPILAIEGVTAEDSGTYRCSSS-NIGGEA---TAEVRLQVS-----TPYRVDVNPPL-LSVHLDGSANFQCEIT   79 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~---~~~~~l~v~-----~~~~~~~~~~~-~~~~~g~~~~l~C~~~   79 (150)
                      .++....+.|.|.+++.+|+|.|+|.+. +..|..   .....+.+.     .+|.+...+.. ..+.+|+.+.|.|.+.
T Consensus       155 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~  234 (315)
T 1itb_B          155 IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT  234 (315)
T ss_dssp             SSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEE
T ss_pred             ceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEe
Confidence            4455556899999999999999999999 666664   334445444     34445443332 4678999999999999


Q ss_pred             -CCCCCCcEEEEeecCcccCCCcc--------------------eeeEEEccCCCCC-CceEEEEEEeCCCCceeeeEEE
Q psy11131         80 -PYDSGPYLIAWFKDGRQIPGRTS--------------------STSLVINPVGRED-RGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        80 -~p~~~~~~~~w~~~~~~~~~~~~--------------------~~~l~~~~~~~~~-~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                       .|   .+.+.|++++..+.....                    ...|.|.++..+| .|.|.|.|.|..| .....+.|
T Consensus       235 g~P---~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G-~~~~~~~l  310 (315)
T 1itb_B          235 GQL---SDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG-IDAAYIQL  310 (315)
T ss_dssp             ECT---TSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTC-CEEEEEEE
T ss_pred             cCC---CCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCC-ceeEEEEE
Confidence             99   899999999887765321                    2389999999999 9999999999999 57778887


Q ss_pred             EEcC
Q psy11131        138 QLGG  141 (150)
Q Consensus       138 ~v~~  141 (150)
                      .|.+
T Consensus       311 ~v~~  314 (315)
T 1itb_B          311 IYPV  314 (315)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            7643

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.80  E-value=1.7e-18  Score=110.44  Aligned_cols=118  Identities=21%  Similarity=0.333  Sum_probs=90.0

Q ss_pred             CCceEEeC---CeEEEcCCCCCCCeEEEEEeccCCcc-----eeEEEEEEEecC---ceEEe-CCCcEEEecCCcEEEEE
Q psy11131          9 GPRTRVLG---PILAIEGVTAEDSGTYRCSSSNIGGE-----ATAEVRLQVSTP---YRVDV-NPPLLSVHLDGSANFQC   76 (150)
Q Consensus         9 ~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~---~~~~~-~~~~~~~~~g~~~~l~C   76 (150)
                      ..|+.+..   .+|.|.+++.+|+|.|+|.+.+..+.     ....+.|.|..+   +.+.. .+....+.+|+.+.|.|
T Consensus        79 ~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C  158 (250)
T 2fbo_J           79 LGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTC  158 (250)
T ss_dssp             TTTEECSCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECC
T ss_pred             CceEEeccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEE
Confidence            34555543   58999999999999999999986553     245778888764   23333 33345667899999999


Q ss_pred             Eec-CCCCCCcEEEEeecCcccCCCc------------------------c-----eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         77 EIT-PYDSGPYLIAWFKDGRQIPGRT------------------------S-----STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        77 ~~~-~p~~~~~~~~w~~~~~~~~~~~------------------------~-----~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .+. .|   .|.+.|++++..+....                        .     ...|.|.++..+|.|.|.|.+.|.
T Consensus       159 ~~~g~p---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~  235 (250)
T 2fbo_J          159 PCTDCA---NANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG  235 (250)
T ss_dssp             CEESCT---TCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESS
T ss_pred             EecCCC---CCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCC
Confidence            999 88   88999999876554311                        1     258999999999999999999997


Q ss_pred             CCC
Q psy11131        127 DGD  129 (150)
Q Consensus       127 ~g~  129 (150)
                      .|.
T Consensus       236 ~g~  238 (250)
T 2fbo_J          236 QGE  238 (250)
T ss_dssp             SSG
T ss_pred             ccc
Confidence            663

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.80  E-value=1.6e-18  Score=112.86  Aligned_cols=134  Identities=16%  Similarity=0.219  Sum_probs=100.5

Q ss_pred             CCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec----CceEEeCCCcEEEecCCcEEEEEEec-
Q psy11131          7 LPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQCEIT-   79 (150)
Q Consensus         7 ~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~-   79 (150)
                      ..+.++.... +.|.|.+++.+|+|.|+|.+.+..+.. +..+.|.|..    +|.+...+....+.+|+.+.|.|.+. 
T Consensus       133 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~  212 (292)
T 4dkd_C          133 MRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASS  212 (292)
T ss_dssp             CSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEE
T ss_pred             ccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecC
Confidence            3444555444 669999999999999999999876643 4478888886    67776666655567999999999998 


Q ss_pred             CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         80 PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        80 ~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      .|.  ...+.|.+++..+.....          ...|.|.++..+|.|.|.|.+.|..| ..+..+.|.|.+..
T Consensus       213 ~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          213 VDV--NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQG-KHSTSMFFRVVESA  283 (292)
T ss_dssp             SSS--CCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSC-EEEEEEEECC----
T ss_pred             CCC--ceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCC-CceeEEEEEEeeCC
Confidence            551  467888887765543221          35899999999999999999999999 67888888887654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.80  E-value=2.6e-18  Score=112.69  Aligned_cols=120  Identities=29%  Similarity=0.457  Sum_probs=97.5

Q ss_pred             CeEEEcCCCC-CCCeEEEEEeccCCcceeEEEEEEEecC-------ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE
Q psy11131         17 PILAIEGVTA-EDSGTYRCSSSNIGGEATAEVRLQVSTP-------YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL   87 (150)
Q Consensus        17 ~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~l~v~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~   87 (150)
                      ..|.|.++.. +|+|.|+|.+.+..|.....+.|.|...       |.+...+....+.+|+.+.|.|.+. .|   .+.
T Consensus        63 ~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p---~~~  139 (304)
T 2yd9_A           63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP---DPE  139 (304)
T ss_dssp             EEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSS---CCE
T ss_pred             eEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCC---CCe
Confidence            4699999998 9999999999998888888889999864       5566667777889999999999999 88   899


Q ss_pred             EEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         88 IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        88 ~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +.|++++..+.....        ...|.|.++...|.|.|.|.+.|..|...+....+.|
T Consensus       140 v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v  199 (304)
T 2yd9_A          140 ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV  199 (304)
T ss_dssp             EEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEE
Confidence            999999876643211        4589999999999999999999998843333244444

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.80  E-value=2.6e-19  Score=117.55  Aligned_cols=128  Identities=15%  Similarity=0.142  Sum_probs=97.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEecCceEEeCC-CcEEEecCCcEEEEEEec-CCCCCCc-EEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVSTPYRVDVNP-PLLSVHLDGSANFQCEIT-PYDSGPY-LIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~-~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~   91 (150)
                      +.|.|.++...|.|.|+|.+.|..+.  ....+.|.|..+|.+...+ ....+..|+.+.|.|.+. .|   .| .+.|+
T Consensus       172 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P---~p~~v~W~  248 (308)
T 4fom_A          172 SQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANP---PPFKSVWS  248 (308)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEES---CEEEEECC
T ss_pred             ccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCC---CCcEEEEE
Confidence            46899999999999999999987655  3445666677766654433 334567789999999999 87   77 69999


Q ss_pred             ecCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccccc
Q psy11131         92 KDGRQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHY  148 (150)
Q Consensus        92 ~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~  148 (150)
                      +++..+.....   ...+.+..+..+|.|.|.|.|.|..| ..+..+.|.|.++|....|
T Consensus       249 k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G-~~~~~~~l~V~~~P~~~~~  307 (308)
T 4fom_A          249 RLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLG-QRSDQKVIYISDPPHHHHH  307 (308)
T ss_dssp             BSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTE-EEEEEEECCEECCC-----
T ss_pred             ECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCC-cEEEEEEEEEEcCCCCccC
Confidence            98877654332   44566788999999999999999999 6788899999998865443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.80  E-value=1.8e-17  Score=109.93  Aligned_cols=130  Identities=22%  Similarity=0.206  Sum_probs=99.0

Q ss_pred             CCCceEEeCCeEEEcCCCCCCCeEEEEEeccC--Ccce----eEEEEEEEecCc----eEEeCCCcEEEecCCcEEEEEE
Q psy11131          8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNI--GGEA----TAEVRLQVSTPY----RVDVNPPLLSVHLDGSANFQCE   77 (150)
Q Consensus         8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~----~~~~~l~v~~~~----~~~~~~~~~~~~~g~~~~l~C~   77 (150)
                      .+.++...++.|.|.+++.+|+|.|+|.+.|.  .|..    +..+.|.|..++    .+. .+....+.+|+.+.|.|.
T Consensus       173 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~  251 (329)
T 3oq3_B          173 DGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCT  251 (329)
T ss_dssp             SSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEE
T ss_pred             CCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEE
Confidence            34566666789999999999999999999976  5443    334778888665    333 566678899999999999


Q ss_pred             ec-CCCCCCc-EEEEeecCccc-CCCc------------ceeeEEEccCCCCCCc-eEEEEEEeCCCCceeeeEEEEE
Q psy11131         78 IT-PYDSGPY-LIAWFKDGRQI-PGRT------------SSTSLVINPVGREDRG-IYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        78 ~~-~p~~~~~-~~~w~~~~~~~-~~~~------------~~~~l~~~~~~~~~~g-~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +. .|....+ .+.|++++..+ ....            ....|.|.++..+|.| .|.|.+.|..| .....+.|.|
T Consensus       252 ~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G-~~~~~~~l~v  328 (329)
T 3oq3_B          252 AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF-DKTLTTTVVL  328 (329)
T ss_dssp             EEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSC-EEEEEEEEEE
T ss_pred             EEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCC-ceEEEEEEEe
Confidence            99 5411156 89999988764 2221            1457999999999999 99999999999 5666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.80  E-value=1.9e-19  Score=120.30  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=99.0

Q ss_pred             CeEEEcCCCCCCCe-EEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSG-TYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~   94 (150)
                      ++|.|.+++.+|+| .|+|.+.+..|..+..+.|.|..+|.+..    ....+|+.+.|.|.+. .|   .|.+.|++++
T Consensus       212 ~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~----~~~~~g~~v~l~C~~~g~P---~p~i~W~~~g  284 (347)
T 2ifg_A          212 LGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQL----HTAVEMHHWCIPFSVDGQP---APSLRWLFNG  284 (347)
T ss_dssp             EEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEEEE----CCCEESSSEEEEEEEEEES---CCEEEEEETT
T ss_pred             ceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeee----ccCccCceEEEEEEeeecC---CCcEEEEeCC
Confidence            67999999999999 99999999888888888888887776411    1234689999999999 99   9999999998


Q ss_pred             cccCCCcc---------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         95 RQIPGRTS---------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        95 ~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      ..+.....               ...|.|.++..+|.|.|+|.|.|..| ..+..+.+.|.++|
T Consensus       285 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG-QASASIMAAFMDNP  347 (347)
T ss_dssp             EECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEECSCCCC
T ss_pred             EECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCC-ceeeEEEEEecCCC
Confidence            87653321               34599999999999999999999999 67888888887765

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.79  E-value=1.3e-18  Score=107.04  Aligned_cols=120  Identities=18%  Similarity=0.279  Sum_probs=90.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~   91 (150)
                      +.|.|.+++.+|+|.|+|.+.+..+.  .+..+.|.|.+   +|.+...+ ...+.+|+.+.|.|.+..+   .+.+.|+
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~---~~~~~w~  132 (188)
T 1oll_A           57 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA---TSMFLLL  132 (188)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSS---CSEEEEE
T ss_pred             eEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCC---CCEEEEE
Confidence            67999999999999999999875442  34556777764   44554434 3457899999999998744   5689999


Q ss_pred             ecCcccCC----CcceeeEEEccCCCCCCceEEEEEEeCCC--CceeeeEEEEEc
Q psy11131         92 KDGRQIPG----RTSSTSLVINPVGREDRGIYQCIARRSDG--DVAQGSAELQLG  140 (150)
Q Consensus        92 ~~~~~~~~----~~~~~~l~~~~~~~~~~g~y~C~~~~~~g--~~~~~~~~l~v~  140 (150)
                      +++..+..    ......|.|.++..+|.|.|.|.+.|...  ...+..+.|.|.
T Consensus       133 k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          133 KEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             ECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            99876542    11257899999999999999999987642  235667777764

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.79  E-value=2.2e-18  Score=104.15  Aligned_cols=118  Identities=15%  Similarity=0.222  Sum_probs=92.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~   94 (150)
                      ..+.|.+++.+|+|.|+|.+.+..  .+..+.|.|..++.....+ ...+.+|+.+.|.|.+.  .|   .+.+.|++++
T Consensus        51 ~~~~~~~~~~~d~G~Y~C~~~~~~--~s~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~g  124 (170)
T 3ry4_A           51 QPSYRFKANNNDSGEYTCQTGQTS--LSDPVHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSWKDKP---LVKVTFFQNG  124 (170)
T ss_dssp             SSEEEEECCGGGCEEEEEEETTSB--CCCCEEEEEECCSEEEECS-CSEECTTCCEEEEEEEGGGCC---EEEEEEEETT
T ss_pred             cceEEEecccccCeEEEEEEeCCC--ceEeEEEEEECCceEecCC-CceeecCCeEEEEEECCCCCC---CceEEEEECC
Confidence            557888999999999999998743  3445677888765544433 35678999999999995  56   7999999998


Q ss_pred             cccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         95 RQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      ..+........|.|.++..+|.|.|.|.+.|..|...+..+.|.|+
T Consensus       125 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          125 KSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             EEEEEESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             eEccccCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEEC
Confidence            8765333367899999999999999999999988446667777663

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.79  E-value=7.2e-19  Score=116.40  Aligned_cols=124  Identities=14%  Similarity=0.185  Sum_probs=101.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeC-CCcEEEecCCcEEEEEEec-CCCCCCcE-EEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN-PPLLSVHLDGSANFQCEIT-PYDSGPYL-IAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~C~~~-~p~~~~~~-~~w~~~   93 (150)
                      ..|.|.++...|.|.|+|.+.+..+..+..+.|.|..+|.+... +....+.+|+.+.|.|.+. .|   .+. +.|+++
T Consensus       194 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~~i~W~~~  270 (331)
T 3u83_A          194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP---PATEYHWTTL  270 (331)
T ss_dssp             EEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEES---CCCEEEEEET
T ss_pred             EEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCC---CCCEEEEEEC
Confidence            56889999999999999999998888888889999877766533 3334577899999999999 88   777 999999


Q ss_pred             CcccCCCcc--eeeEEEc-cCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         94 GRQIPGRTS--STSLVIN-PVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        94 ~~~~~~~~~--~~~l~~~-~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      +..+.....  ...|.|. ++..+|.|.|.|.+.|..| .....+.|.|.+.+.
T Consensus       271 ~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~~~~  323 (331)
T 3u83_A          271 NGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG-TRSGQVEVNITEAAA  323 (331)
T ss_dssp             TBSCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTE-EEEEEEEECCBC---
T ss_pred             CCcccccceecCcEEEEeCCCccccCeEEEEEEEeccc-cceEEEEEEEeccch
Confidence            887754432  5689999 8999999999999999999 578888888877643

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.79  E-value=1.1e-17  Score=107.75  Aligned_cols=119  Identities=19%  Similarity=0.296  Sum_probs=89.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEe---c-CCCCCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI---T-PYDSGPYLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~---~-~p~~~~~~~~w   90 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+.  ....+.|.|..     ..+....+.+|+.+.|.|.+   . .|   .+.+.|
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p---~~~v~W  155 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKR---VTKVNW  155 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-----CCCSEEEEETTCCEEECCBCEESSSSC---CCEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec-----cCCCccccccCCcEEEEEEecCCCCCC---ccceEE
Confidence            78999999999999999999876443  34455555542     23456778899999999999   4 67   899999


Q ss_pred             eecCccc-CC----------------------------C---cceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131         91 FKDGRQI-PG----------------------------R---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ  138 (150)
Q Consensus        91 ~~~~~~~-~~----------------------------~---~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~  138 (150)
                      ++++... ..                            .   .....|.|.++..+|.|.|.|.+.|..| .....+.|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g-~~~~~~~l~  234 (268)
T 3mj6_A          156 MFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKL-ESRKTIVLH  234 (268)
T ss_dssp             EEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEE
T ss_pred             EecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCc-eEEEEEEEE
Confidence            9843211 00                            0   1156899999999999999999999888 677888888


Q ss_pred             EcCcCc
Q psy11131        139 LGGTRN  144 (150)
Q Consensus       139 v~~~p~  144 (150)
                      |...|+
T Consensus       235 V~~~~p  240 (268)
T 3mj6_A          235 VVQDEF  240 (268)
T ss_dssp             EECC--
T ss_pred             EEcCCC
Confidence            854443

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.79  E-value=1.8e-18  Score=108.31  Aligned_cols=119  Identities=26%  Similarity=0.407  Sum_probs=90.5

Q ss_pred             EEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec-CceEEeCCCcEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecCc
Q psy11131         20 AIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST-PYRVDVNPPLLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        20 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~~   95 (150)
                      .|.+++..|+|.|+|.+.+..+.. +....|.|.. ++.+...+....+.+|+.+.|.|.+ . .|   .+.+.|++++.
T Consensus        72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p---~~~v~W~~~g~  148 (217)
T 2vr9_A           72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIP---EPTLIWIKDGV  148 (217)
T ss_dssp             CCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEES---CCEEEEEETTE
T ss_pred             EeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCC---CCeEEEEECCc
Confidence            688999999999999999877654 3355666654 3444455666778899999999998 6 88   89999999987


Q ss_pred             ccCCC--------cc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         96 QIPGR--------TS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        96 ~~~~~--------~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      .+...        ..     ...|.|.++..+|.|.|.|.+.|..|........+.+..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~  207 (217)
T 2vr9_A          149 PLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV  207 (217)
T ss_dssp             EECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             CCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence            76521        11     357999999999999999999999994444444554443

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.79  E-value=4.5e-19  Score=117.59  Aligned_cols=131  Identities=25%  Similarity=0.421  Sum_probs=63.7

Q ss_pred             CCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce----------------------EE----eC
Q psy11131          7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR----------------------VD----VN   60 (150)
Q Consensus         7 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~----------------------~~----~~   60 (150)
                      ..+.++.+..+.|.|.+++.+|+|.|+|.+.+. +.....+.|.|...+.                      +.    ..
T Consensus        51 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~  129 (334)
T 1ry7_B           51 VPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMD  129 (334)
T ss_dssp             ---------------------------------------------------------------------CCCCSCCTTCC
T ss_pred             CCcccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEecccccc
Confidence            344566665688999999999999999999988 7667777777765321                      11    11


Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDV  130 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~  130 (150)
                      .....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++...|.|.|.|.+.|..| .
T Consensus       130 ~~~~~v~~g~~v~l~C~~~g~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-~  205 (334)
T 1ry7_B          130 KKLLAVPAANTVRFRCPAAGNP---TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-S  205 (334)
T ss_dssp             CCEEEEETTCCEEEECCCCCSS---CCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTE-E
T ss_pred             ceeEEecCCCcEEEEEEccCCC---CCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCC-C
Confidence            1235678999999999998 88   899999998876653321         45799999999999999999999988 5


Q ss_pred             eeeeEEEEEcCc
Q psy11131        131 AQGSAELQLGGT  142 (150)
Q Consensus       131 ~~~~~~l~v~~~  142 (150)
                      ....+.|.|...
T Consensus       206 ~~~~~~l~V~~~  217 (334)
T 1ry7_B          206 IRQTYTLDVLER  217 (334)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEEEEEEEEecC
Confidence            777788888763

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.79  E-value=1.1e-17  Score=118.34  Aligned_cols=134  Identities=19%  Similarity=0.260  Sum_probs=101.7

Q ss_pred             CCceEEeC----C--eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CC
Q psy11131          9 GPRTRVLG----P--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PY   81 (150)
Q Consensus         9 ~~~~~~~~----~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p   81 (150)
                      +.|+.+..    +  +|.|.+++.+|+|.|+|.+ |..|.....+.|.|...+.....+....+.+|+.+.|.|.+. .+
T Consensus       392 ~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~  470 (585)
T 2ocw_A          392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKF  470 (585)
T ss_pred             CCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCC
Confidence            45555542    3  3999999999999999999 777878888889998654433346667789999999999985 22


Q ss_pred             -CCCCcEEEEeecCcccCCCc---------------ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         82 -DSGPYLIAWFKDGRQIPGRT---------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        82 -~~~~~~~~w~~~~~~~~~~~---------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                       ..-.+.+.|++++..+....               ....|.|.++..+|.|.|.|.|.|..|......+.|.|..+|
T Consensus       471 ~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          471 SSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             CCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence             10167899999987653221               025899999999999999999999998544555888888766

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.79  E-value=2.5e-18  Score=125.70  Aligned_cols=124  Identities=21%  Similarity=0.371  Sum_probs=103.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      +.|.|.++..+|+|.|+|.+.|..|.....+.|.|..+|.+...+....+.+|+.+.|.|.+. .|   .|.+.|.+++.
T Consensus       677 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P---~p~i~W~k~~~  753 (816)
T 3dmk_A          677 SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFP---KPQVTWKKAVG  753 (816)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEES---CCEEECCEECS
T ss_pred             eEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCC---CCeEEEEecCC
Confidence            579999999999999999999999998889999999998888888888889999999999999 89   89999999765


Q ss_pred             ccCCC-------cc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         96 QIPGR-------TS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        96 ~~~~~-------~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      .+...       ..    ...|.|.++..+|.|.|.|.|.|..| ....++.+.....+.
T Consensus       754 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~v~~~~~~~~~  812 (816)
T 3dmk_A          754 DTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIG-SGLSAVIMISVQAHH  812 (816)
T ss_dssp             SSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSS-SCEEEEEEEEEEC--
T ss_pred             CCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCC-CCcEEEEEEEeeccc
Confidence            43211       11    34799999999999999999999999 566666666655543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.79  E-value=7.5e-18  Score=120.42  Aligned_cols=129  Identities=19%  Similarity=0.254  Sum_probs=103.7

Q ss_pred             ecCCCCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEecCce-EEeCCCcEEEecCCcEEEEEEec-
Q psy11131          5 LVLPGPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEIT-   79 (150)
Q Consensus         5 ~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~-   79 (150)
                      ++..+.++.+..  +.|.|.++...|+|.|+|.+.|..|.. +..+.|.|..+|. ....+....+.+|+.+.|.|.+. 
T Consensus       506 ~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g  585 (642)
T 1e07_A          506 SLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSAS  585 (642)
T ss_pred             eCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEecc
Confidence            344455666543  689999999999999999999988764 3468888886543 44556667889999999999999 


Q ss_pred             CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         80 PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        80 ~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      .|   .+.+.|++++..+..   ...|.|.++..+|.|.|.|.+.|..| ....++.|.|.
T Consensus       586 ~p---~p~v~W~~~g~~i~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G-~~~~s~~l~V~  639 (642)
T 1e07_A          586 NP---SPQYSWRINGIPQQH---TQVLFIAKITPNNNGTYACFVSNLAT-GRNNSIVKSIT  639 (642)
T ss_pred             CC---CCeEEEEECCEECcc---CceEEECcccccCCeEEEEEEEeccc-CcceeEEEEEE
Confidence            89   899999999987653   35799999999999999999999999 46666666654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.79  E-value=1.3e-18  Score=106.75  Aligned_cols=120  Identities=23%  Similarity=0.318  Sum_probs=88.5

Q ss_pred             CCeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEE
Q psy11131         16 GPILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAW   90 (150)
Q Consensus        16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w   90 (150)
                      .+.|.|.+++.+|+|.|+|.+.+..+.  .+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+..+   ++.+.|
T Consensus        51 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~---~~~~~w  126 (184)
T 2gi7_A           51 QAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG---FDQFAL  126 (184)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSC---CCEEEE
T ss_pred             ccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCC---CcEEEE
Confidence            378999999999999999999987653  34556777753   34444433 2345689999999997744   569999


Q ss_pred             eecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCC----ceeeeEEEEE
Q psy11131         91 FKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGD----VAQGSAELQL  139 (150)
Q Consensus        91 ~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~----~~~~~~~l~v  139 (150)
                      ++++..+.....    ...|.|.++..+|.|.|.|.+.|..+.    ..+..+.|.|
T Consensus       127 ~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          127 YKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             EECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             EECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            999876653221    567889999999999999999997531    2355566654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.78  E-value=4.7e-18  Score=107.19  Aligned_cols=120  Identities=20%  Similarity=0.141  Sum_probs=82.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~   94 (150)
                      .+|.|.+++.+|+|.|+|.+.|..+.......+.+..  .....+....+.+|..+.+.|.+.  .|   .|.+.|++++
T Consensus        83 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~--~~~~~~~~~~~~~g~~v~l~c~~~g~~P---~p~i~W~k~~  157 (226)
T 4f80_A           83 AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA--LGSDLHVDVKGYKDGGIHLECRSTGWYP---QPQIQWSNNK  157 (226)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB--CCCCCEEEEEEEETTEEEEEEEEEEEBS---CCEEEEECTT
T ss_pred             EEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeecc--ceecccceeeeccCCceeeEEEeccCCC---CCEEEEEECC
Confidence            4799999999999999999999777665554444433  222223345677899999999998  58   8999999865


Q ss_pred             cccCCCc-c---------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         95 RQIPGRT-S---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        95 ~~~~~~~-~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      ..+.... .         ...+.+..+..+|.|.|+|.|.|..| .....+.+.|.+|
T Consensus       158 ~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g-~~~~~~~v~v~ep  214 (226)
T 4f80_A          158 GENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLL-GLEKTASISIADP  214 (226)
T ss_dssp             SCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTT-TEEEEEEECCCTT
T ss_pred             ceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCC-CeEEEEEEEECCC
Confidence            4332211 1         12233445677899999999999998 5777778877653

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.78  E-value=7.4e-19  Score=117.23  Aligned_cols=131  Identities=19%  Similarity=0.237  Sum_probs=70.9

Q ss_pred             CceEEeCCeEEEcCCCCCCCeEEEEEeccCC-cce---eEEEEEEEec------CceEEeCCCc--EEEecCCcEEEEEE
Q psy11131         10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIG-GEA---TAEVRLQVST------PYRVDVNPPL--LSVHLDGSANFQCE   77 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~---~~~~~l~v~~------~~~~~~~~~~--~~~~~g~~~~l~C~   77 (150)
                      .++...+..|.|.+++.+|+|.|+|.+.|.. +..   +..+.|.|..      +|.+...+..  ..+.+|+.+.|.|.
T Consensus       170 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~  249 (349)
T 4dep_C          170 NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCT  249 (349)
T ss_dssp             SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEE
T ss_pred             cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEE
Confidence            4455555789999999999999999999875 443   5667777775      3443332222  26778999999999


Q ss_pred             ec-C----CCCCCcEEEEeecCcccCCCc-c-----------------eeeEEEccCCCCCC-ceEEEEEEeCCCCceee
Q psy11131         78 IT-P----YDSGPYLIAWFKDGRQIPGRT-S-----------------STSLVINPVGREDR-GIYQCIARRSDGDVAQG  133 (150)
Q Consensus        78 ~~-~----p~~~~~~~~w~~~~~~~~~~~-~-----------------~~~l~~~~~~~~~~-g~y~C~~~~~~g~~~~~  133 (150)
                      +. .    |   .+.+.|++++..+.... .                 ...|.|.++..+|. |.|.|.+.|..| ....
T Consensus       250 ~~~~~~g~p---~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G-~~~~  325 (349)
T 4dep_C          250 VYFSFLMDS---RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG-EVAK  325 (349)
T ss_dssp             EEECCCTTC---CCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSC-EEEE
T ss_pred             EEEccCCCC---CCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCC-cEEE
Confidence            98 4    5   78999999887765410 0                 23489999999999 999999999999 6777


Q ss_pred             eEEEEEcCcCc
Q psy11131        134 SAELQLGGTRN  144 (150)
Q Consensus       134 ~~~l~v~~~p~  144 (150)
                      .+.|.|..++|
T Consensus       326 ~~~l~v~~~~p  336 (349)
T 4dep_C          326 AAKVKQKVPAP  336 (349)
T ss_dssp             ECC--------
T ss_pred             EEEEeeecCCC
Confidence            78888876444

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.78  E-value=1.2e-17  Score=113.09  Aligned_cols=132  Identities=24%  Similarity=0.363  Sum_probs=103.2

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCc------eEEeCCCcEEEecCCcEEEEEEec-C
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPY------RVDVNPPLLSVHLDGSANFQCEIT-P   80 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~------~~~~~~~~~~~~~g~~~~l~C~~~-~   80 (150)
                      .+..... +.|.|.++..+|+|.|+|.+.+..+. ......+.|...+      .+...+....+.+|+.+.|.|.+. .
T Consensus       169 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  248 (403)
T 3laf_A          169 SRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGY  248 (403)
T ss_dssp             CSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEE
T ss_pred             eEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCC
Confidence            4444443 78999999999999999999987655 3345677776543      233455667788999999999999 8


Q ss_pred             CCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         81 YDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        81 p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      |   .+.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|..| ..+..+.+.|..+|..
T Consensus       249 p---~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~  315 (403)
T 3laf_A          249 P---PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE-NISASAELTVLVPPWF  315 (403)
T ss_dssp             S---CCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEEEEEE
T ss_pred             C---CCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCC-ceEEEEEEEEECCCcE
Confidence            8   889999999887654332      35799999999999999999999988 5778888888766543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.78  E-value=3.1e-17  Score=110.96  Aligned_cols=125  Identities=21%  Similarity=0.303  Sum_probs=92.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeE---EEEEEEe-------cCceE-EeCCCcEEEecCCcEEEEEEec-CCCCC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATA---EVRLQVS-------TPYRV-DVNPPLLSVHLDGSANFQCEIT-PYDSG   84 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~---~~~l~v~-------~~~~~-~~~~~~~~~~~g~~~~l~C~~~-~p~~~   84 (150)
                      +.|.|.++..+|+|.|+|.+.|..+....   ...+.+.       ..|.+ ...+....+.+|+.+.|.|.+. .|   
T Consensus       157 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P---  233 (384)
T 3kld_A          157 GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP---  233 (384)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEES---
T ss_pred             CcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecC---
Confidence            78999999999999999999987654321   1223222       12222 2345566788999999999999 99   


Q ss_pred             CcEEEEeecC-cccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         85 PYLIAWFKDG-RQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        85 ~~~~~w~~~~-~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .|.+.|++++ ..+.....    ...|.|.++..+|.|.|.|.+.|..| .......|.|..+|..
T Consensus       234 ~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~v~~~P~~  298 (384)
T 3kld_A          234 VPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG-KNVAKGQLTFYAQPNW  298 (384)
T ss_dssp             CCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEEEEEE
T ss_pred             CCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCC-eEEEEEEEEEecCCcc
Confidence            9999999854 33332211    46799999999999999999999998 5667777777766543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.78  E-value=4e-18  Score=113.31  Aligned_cols=131  Identities=23%  Similarity=0.297  Sum_probs=102.7

Q ss_pred             CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEE--eCCCcEEEecCCcEEEEEE-----ec-C
Q psy11131          9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD--VNPPLLSVHLDGSANFQCE-----IT-P   80 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~~g~~~~l~C~-----~~-~   80 (150)
                      ..++...+++|.|.+++.+|+|.|+|.+.+..+.....+.|.|..++...  .......+.+|+.+.|.|.     .. .
T Consensus        73 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~  152 (339)
T 3o4o_C           73 ETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDK  152 (339)
T ss_dssp             SSCEEEETTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSS
T ss_pred             cccEEeeCCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCC
Confidence            45666667899999999999999999999988888888889988654321  1122346789999999999     56 7


Q ss_pred             CCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCC---ceeeeEEEEEcCc
Q psy11131         81 YDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGD---VAQGSAELQLGGT  142 (150)
Q Consensus        81 p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~---~~~~~~~l~v~~~  142 (150)
                      |   .+.+.|++++..+.....       ...|.|.++...|.|.|.|.+.|..|.   .....+.|.|...
T Consensus       153 p---~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~  221 (339)
T 3o4o_C          153 T---DVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK  221 (339)
T ss_dssp             S---CCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECC
T ss_pred             C---CceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcC
Confidence            7   889999999887764422       247999999999999999999998763   2456677777643

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.78  E-value=1.6e-17  Score=117.54  Aligned_cols=125  Identities=22%  Similarity=0.297  Sum_probs=102.0

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ   96 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~   96 (150)
                      .|.|.+++.+|+|.|+|.+.+..+..+..+.|.|..+|.+...+....+.+|+.+.|.|.+. .+.  .+.+.|++++..
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~--~~~v~W~k~~~~  153 (585)
T 2ocw_A           76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENA--QKRKSLYKQIGL  153 (585)
T ss_pred             EEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCC--CccEEEEECCCC
Confidence            69999999999999999999887777888999999888877777778899999999999998 431  578999998653


Q ss_pred             cCC-------------Ccc-----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         97 IPG-------------RTS-----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        97 ~~~-------------~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      ...             ..+           ...|.|.++..+|.|.|.|.+.|..| .....+.|.|..+|+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g-~~~~~~~l~V~~~~p~  225 (585)
T 2ocw_A          154 YPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSN-SNKKNADLQVLKPEPE  225 (585)
T ss_pred             CceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCc-cccceEEEEEccCCCc
Confidence            210             011           12799999999999999999999888 5778888888876554

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.77  E-value=2.4e-18  Score=108.05  Aligned_cols=122  Identities=20%  Similarity=0.303  Sum_probs=87.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC---ceEEeCCCcEEEecCCcEEEEEEe-c-CCCCCCcEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP---YRVDVNPPLLSVHLDGSANFQCEI-T-PYDSGPYLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~   91 (150)
                      .+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|..+   |.+...+ ...+.+|+.+.|.|.+ . .|   .+.+.|+
T Consensus        72 ~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P---~~~v~W~  146 (222)
T 4i0k_A           72 ASLRLQRVRVTDEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYP---EAEVFWK  146 (222)
T ss_dssp             CCEEECSCCGGGCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBS---CCEEEEE
T ss_pred             EEEEECCcccccCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccC---CCeEEEE
Confidence            67999999999999999999875 34445556666643   3444333 3356789999999999 5 88   8999999


Q ss_pred             ec-CcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         92 KD-GRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        92 ~~-~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      ++ +..+.....          ...+.+.++..+|.|.|.|.+.|..| ....++.+.|.++|-
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          147 DGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVL-QQDAHGSVTITGQPL  209 (222)
T ss_dssp             CTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTT-TEEEEEEEECCC---
T ss_pred             cCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCC-CCceEEEEEEeCCcc
Confidence            84 443322111          23478888999999999999999999 678888998887653

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.77  E-value=1.6e-17  Score=121.56  Aligned_cols=126  Identities=35%  Similarity=0.624  Sum_probs=107.4

Q ss_pred             CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE
Q psy11131          9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL   87 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~   87 (150)
                      +.++....++|.|.+++.+|+|.|+|.+.|..|..+....|.|..++.....+....+.+|+.+.|.|.+. .|   .+.
T Consensus       298 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~  374 (816)
T 3dmk_A          298 NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP---IKT  374 (816)
T ss_dssp             SSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEEC---CCE
T ss_pred             CCceEeccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccC---CCE
Confidence            34555556899999999999999999999998888888889998877777777777888999999999999 88   899


Q ss_pred             EEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         88 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      +.|++++..+...  ...|.|.++..+|.|.|.|.+.|..| .....+.+.|.
T Consensus       375 v~W~k~g~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~  424 (816)
T 3dmk_A          375 VSWMKDGKAIGHS--ESVLRIESVKKEDKGMYQCFVRNDRE-SAEASAELKLG  424 (816)
T ss_dssp             EEEEETTEECSCC--SSEEEESSCCGGGCEEEEEEEECSSC-EEEECCEEECC
T ss_pred             EEEEECCEECCCC--CCEEEEcCCCHHHCEEEEEEEECCCC-cEEEEEEEEEc
Confidence            9999999887644  46899999999999999999999888 55666666664

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.77  E-value=1e-17  Score=106.99  Aligned_cols=121  Identities=20%  Similarity=0.331  Sum_probs=83.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCc-EEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPY-LIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~-~~~w~~~   93 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+.. ....|..+.|.|.+.  .|   .+ .+.|+++
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P---~pi~v~W~k~  157 (248)
T 3pv7_A           82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYP---EAINITWEKQ  157 (248)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBS---SCCEEEEEEE
T ss_pred             EEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEEC---CCeEEEEEEC
Confidence            45999999999999999999988777778889999988776655442 234566778999998  57   77 9999998


Q ss_pred             CcccCCC----------------cc----eeeEEEccCCCCCCceEEEEEEeCCCC-ceeeeEEEEEcC
Q psy11131         94 GRQIPGR----------------TS----STSLVINPVGREDRGIYQCIARRSDGD-VAQGSAELQLGG  141 (150)
Q Consensus        94 ~~~~~~~----------------~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~v~~  141 (150)
                      +..+...                ..    ...|.+.....+|.|.|+|.+.|..+. .....+.|.|..
T Consensus       158 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~~  226 (248)
T 3pv7_A          158 TQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAAR  226 (248)
T ss_dssp             CSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC----
T ss_pred             CccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEcC
Confidence            8643211                00    356777788888899999999998773 345566666633

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.77  E-value=3.9e-17  Score=100.02  Aligned_cols=118  Identities=14%  Similarity=0.231  Sum_probs=84.1

Q ss_pred             CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce--eEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCC
Q psy11131          8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDS   83 (150)
Q Consensus         8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~   83 (150)
                      .+.|+.+.. ++|.|.+++++|+|.|+|.+.+..|..  ...+.|.|.++.    ..+.... .+..+.|.|.+. .|  
T Consensus        56 ~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~----~~P~i~~-~~~~v~L~C~~~~~p--  128 (182)
T 1hnf_A           56 EKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV----SKPKISW-TCINTTLTCEVMNGT--  128 (182)
T ss_dssp             SCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCC----CCCEEEE-ETTTTEEEEECSSCS--
T ss_pred             CCCeEEECCCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcC----CCCEEEE-ccCcEEEEeEccCCC--
Confidence            457777766 899999999999999999999876664  345678887531    1111222 234789999999 88  


Q ss_pred             CCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         84 GPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        84 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                       .+.+.|++++..+  ......+.+.. ...|.|.|.|.|.|..+ ..+....+
T Consensus       129 -~~~~~W~~~g~~l--~~~~~~i~~~~-~~~d~G~Y~C~a~N~~~-~~~s~~~~  177 (182)
T 1hnf_A          129 -DPELNLYQDGKHL--KLSQRVITHKW-TTSLSAKFKCTAGNKVS-KESSVEPV  177 (182)
T ss_dssp             -SCEEEEEESSCEE--EEESSCEEEEC-CSCEEEEEEEEEECSSC-EEEEEEEE
T ss_pred             -CCEEEEEECCEEC--CCCCcEEEEec-ccCCCcEEEEEEEeCCC-CcEEccee
Confidence             8999999998877  11123344333 46889999999999998 34444433

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.77  E-value=2.2e-17  Score=106.13  Aligned_cols=133  Identities=20%  Similarity=0.346  Sum_probs=95.1

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcc-----eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGE-----ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE   77 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~   77 (150)
                      +.|+.+..      .+|.|.+++.+|+|.|.|.+.+..+.     ....+.|.|..++.+...+....+.+|+.+.|.|.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~  144 (256)
T 1nqb_A           65 KSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCR  144 (256)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEE
T ss_pred             CCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeE
Confidence            36776652      47999999999999999999987542     22346788887766666667778899999999999


Q ss_pred             ec-CCCCCCc-----EEEEee--cCcccC------------CCcc--------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         78 IT-PYDSGPY-----LIAWFK--DGRQIP------------GRTS--------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        78 ~~-~p~~~~~-----~~~w~~--~~~~~~------------~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      +. .|   .+     .+.|++  ++..+.            ...+        ...|.|.++..+|.|.|.|.+.+....
T Consensus       145 ~~~~~---~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~  221 (256)
T 1nqb_A          145 SSQSI---VHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPY  221 (256)
T ss_dssp             ESSCC---BCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred             ecCcc---cccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCce
Confidence            98 66   54     999998  444321            0011        347999999999999999999875432


Q ss_pred             ceeeeEEEEEcCcCc
Q psy11131        130 VAQGSAELQLGGTRN  144 (150)
Q Consensus       130 ~~~~~~~l~v~~~p~  144 (150)
                      ....-..|.|..+++
T Consensus       222 ~fg~gt~l~V~~~~~  236 (256)
T 1nqb_A          222 TFGGGTKLEIKRAAA  236 (256)
T ss_dssp             EECCCEEEEECC---
T ss_pred             EECCCEEEEEECCCC
Confidence            233445677766554

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.77  E-value=3.4e-18  Score=105.75  Aligned_cols=108  Identities=18%  Similarity=0.232  Sum_probs=73.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~   91 (150)
                      +.|.|.+++.+|+|.|+|.+.+..+.  .+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+...   ++.+.|+
T Consensus        58 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~---p~~~~W~  133 (196)
T 2d3v_A           58 ARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLR---FDRFILT  133 (196)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSC---CSEEEEE
T ss_pred             cEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCC---CCEEEEE
Confidence            67999999999999999999887653  24557788876   34444333 3467899999999999833   4689999


Q ss_pred             ecCcccCCC----------cceeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         92 KDGRQIPGR----------TSSTSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        92 ~~~~~~~~~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +++..+...          .....|.|.++..+|.|.|.|.+.|..+
T Consensus       134 k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          134 EEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             ccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            998765321          0137899999999999999999998653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.77  E-value=4.2e-17  Score=100.73  Aligned_cols=116  Identities=17%  Similarity=0.223  Sum_probs=83.3

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc---eEEeCCCcEEEecCC-cEEEEEEec--CCC
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY---RVDVNPPLLSVHLDG-SANFQCEIT--PYD   82 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~---~~~~~~~~~~~~~g~-~~~l~C~~~--~p~   82 (150)
                      .|+.+.. ++|.|.+++.+|+|.|.|.+.+..+.....+.|.|..++   .+...+.  ....|. .+.|.|.+.  .| 
T Consensus        62 ~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~--~~~~g~~~v~L~C~~~g~~p-  138 (193)
T 2if7_A           62 KRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQ--LFQNMTCELHLTCSVEDADD-  138 (193)
T ss_dssp             TTEEECTTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC-----CSSEEEEEEEEEESCCT-
T ss_pred             ccEEECCCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCce--eecCCCceEEEEEEEecCCC-
Confidence            3555554 789999999999999999999887766667888887653   2222221  123454 799999998  35 


Q ss_pred             CCCcEEEEeecCcccCCCcceeeEEEccCCCC-CCceEEEEEEeCCCCceeee
Q psy11131         83 SGPYLIAWFKDGRQIPGRTSSTSLVINPVGRE-DRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        83 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~-~~g~y~C~~~~~~g~~~~~~  134 (150)
                        .+.+.|++++..+..   ...|.+.....+ |.|.|.|.+.|..| ..+..
T Consensus       139 --~p~i~W~~~g~~l~~---~~~l~i~~~~~~~d~G~Y~C~a~N~~g-~~s~~  185 (193)
T 2if7_A          139 --NVSFRWEALGNTLSS---QPNLTVSWDPRISSEQDYTCIAENAVS-NLSFS  185 (193)
T ss_dssp             --TCEEEEEETTEEEES---SSEEEEEECTTTCSCCEEEEEEEETTE-EEEEE
T ss_pred             --ceEEEEEeCCEEcCC---CCeEEEEeccCcCCCCcEEEEEECCCC-ccccc
Confidence              789999998876532   235666554454 89999999999998 34443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.77  E-value=5.6e-18  Score=106.85  Aligned_cols=123  Identities=22%  Similarity=0.329  Sum_probs=90.1

Q ss_pred             EeC-CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEEEecCc---eEEeCCCcEEEecCCcE-EEEEEe-c-CCCCCC
Q psy11131         14 VLG-PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQVSTPY---RVDVNPPLLSVHLDGSA-NFQCEI-T-PYDSGP   85 (150)
Q Consensus        14 ~~~-~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~---~~~~~~~~~~~~~g~~~-~l~C~~-~-~p~~~~   85 (150)
                      +.. +.|.|.+++.+|+|.|+|.+.+.. +.....+.|.|..+|   .+...+....+.+|+.+ .|.|.+ . .|   .
T Consensus        73 ~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p---~  149 (231)
T 2pet_A           73 LDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNP---A  149 (231)
T ss_dssp             ECTTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBS---C
T ss_pred             cCCCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECccc---C
Confidence            444 679999999999999999999875 667788888888653   33444444445678877 999999 6 88   8


Q ss_pred             cEEEEeecCcccCCCc----c-----------------eeeEEEccCCCCCCceEEEEEEeC-----CCCceeeeEEEEE
Q psy11131         86 YLIAWFKDGRQIPGRT----S-----------------STSLVINPVGREDRGIYQCIARRS-----DGDVAQGSAELQL  139 (150)
Q Consensus        86 ~~~~w~~~~~~~~~~~----~-----------------~~~l~~~~~~~~~~g~y~C~~~~~-----~g~~~~~~~~l~v  139 (150)
                      +.+.|++++..+....    .                 ...|.+.....+|.|.|.|.+.|.     .|...+..+.|.|
T Consensus       150 p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          150 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             CEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             CEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            9999999988765443    1                 145777755556699999999994     3321445555544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=8.4e-18  Score=107.34  Aligned_cols=123  Identities=18%  Similarity=0.284  Sum_probs=91.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~   91 (150)
                      +.|.|.+++.+|+|.|+|.+.+..+.  .+..+.|.|.+   +|.+...+. ..+.+|+.+.|.|.+..+   .+.+.|+
T Consensus        60 ~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~---~~~~~w~  135 (242)
T 1p6f_A           60 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTA---TSMFLLL  135 (242)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESC-SEEETTCEEEEEEECTTS---CSEEEEE
T ss_pred             eEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCC-CccCCCCcEEEEEecCCC---CCEEEEE
Confidence            67999999999999999999775432  34567777764   445544332 357899999999998744   5699999


Q ss_pred             ecCcccCC----CcceeeEEEccCCCCCCceEEEEEEeCC--CCceeeeEEEEEcCcC
Q psy11131         92 KDGRQIPG----RTSSTSLVINPVGREDRGIYQCIARRSD--GDVAQGSAELQLGGTR  143 (150)
Q Consensus        92 ~~~~~~~~----~~~~~~l~~~~~~~~~~g~y~C~~~~~~--g~~~~~~~~l~v~~~p  143 (150)
                      +++..+..    ......|.|.++..+|.|.|.|.+.+..  ....+..+.|.|.+++
T Consensus       136 k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~  193 (242)
T 1p6f_A          136 KEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI  193 (242)
T ss_dssp             ECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred             ECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence            99876542    1126789999999999999999998763  2245678888888743

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.76  E-value=1.1e-18  Score=107.28  Aligned_cols=107  Identities=22%  Similarity=0.403  Sum_probs=81.1

Q ss_pred             CeEEEcC-CCCCCCeEEEEEeccCCcceeEEEEEEEecCceEE----------------------eCCCcE---EEecCC
Q psy11131         17 PILAIEG-VTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD----------------------VNPPLL---SVHLDG   70 (150)
Q Consensus        17 ~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~----------------------~~~~~~---~~~~g~   70 (150)
                      ++|.|.+ ++.+|+|.|+|.+.|..|..+....+.|.......                      ......   .+.+|+
T Consensus        44 ~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  123 (186)
T 1jbj_A           44 KHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDG  123 (186)
T ss_dssp             SEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSC
T ss_pred             CEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCC
Confidence            6799999 99999999999999987775555555554221100                      000011   233899


Q ss_pred             cEEEEEEecCCCCCCcEEEEeecCcccCCCcc-eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        71 ~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~-~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+.|.|.+  |   .|.+.|++++..+..... ...|.|.++..+|.|.|+|.+.|..|
T Consensus       124 ~v~l~C~~--p---~p~i~W~k~g~~i~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g  177 (186)
T 1jbj_A          124 SVLLTCGL--T---DKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETS  177 (186)
T ss_dssp             EEEEECSS--S---CSCEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEESSCEE
T ss_pred             eEEEEeeC--C---CCeEEEEECCEECcccCCCcceEEECCCCcCcCEEEEEEEEcCcC
Confidence            99999998  7   889999999988764332 67899999999999999999999877

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.76  E-value=2e-18  Score=107.88  Aligned_cols=121  Identities=19%  Similarity=0.255  Sum_probs=89.1

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCc---ceeEEEEEEEe----cCceEEeCCCcEEEecCCcEEEEEEe
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGG---EATAEVRLQVS----TPYRVDVNPPLLSVHLDGSANFQCEI   78 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~   78 (150)
                      .|+.+..    .+|.|.+++.+|+|.|.|.+.+..+   .....+.|.|.    .+|.+...+......+|+.+.|.|.+
T Consensus        59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~  138 (213)
T 3mj8_L           59 DHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMI  138 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEE
T ss_pred             CcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEe
Confidence            4555432    5799999999999999999998766   34556788887    45555544433334479999999999


Q ss_pred             c-C-CCCCC-cEEEEeecCcccCCCc---------c----eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         79 T-P-YDSGP-YLIAWFKDGRQIPGRT---------S----STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        79 ~-~-p~~~~-~~~~w~~~~~~~~~~~---------~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      . . |   + +.+.|++++..+....         .    ...|.|..+..+|.|.|.|.+.|..+ ....+
T Consensus       139 ~g~~p---~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~-~~~~~  206 (213)
T 3mj8_L          139 NGFYP---ADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGN-TVEKS  206 (213)
T ss_dssp             EEEBS---SCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTE-EEEEE
T ss_pred             eceeC---CCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCc-cEEee
Confidence            8 4 4   4 4999999988765321         0    34588888888999999999999876 34443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.76  E-value=2.2e-17  Score=105.96  Aligned_cols=133  Identities=20%  Similarity=0.285  Sum_probs=93.5

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccC----CcceeEEEEEEEec----------------CceEEeCCC
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNI----GGEATAEVRLQVST----------------PYRVDVNPP   62 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~----~~~~~~~~~l~v~~----------------~~~~~~~~~   62 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+.    .+.....+.|.|..                ++.+...+.
T Consensus        67 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~  146 (256)
T 3umt_A           67 KGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPS  146 (256)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECS
T ss_pred             cceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCC
Confidence            35666553      34999999999999999999886    22334456788874                445555666


Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCCCCceE
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGREDRGIY  119 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~~g~y  119 (150)
                      ...+.+|+.+.|.|.+. .+   .+.+.|++..  ....            ...+        ...|.|.++..+|+|.|
T Consensus       147 ~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  223 (256)
T 3umt_A          147 SLSASLGERVSITCRASQDI---GSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDY  223 (256)
T ss_dssp             EEEECTTCCEEEEEEESSCC---TTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEE
T ss_pred             eEEEECCCCEEEEEEEecCC---CcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEE
Confidence            67889999999999999 77   7799998742  1111            0011        34599999999999999


Q ss_pred             EEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131        120 QCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       120 ~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      .|.+.+........-..|.|..+++
T Consensus       224 ~C~~~~~~~~~fg~gt~L~V~~~~~  248 (256)
T 3umt_A          224 YCLQYASSPPTFGGGTKLEIKRAAA  248 (256)
T ss_dssp             EEEECSSSSCEECCCEEEEEC----
T ss_pred             EEEEeeCCCcEECCCEEEEEECCCc
Confidence            9999986543344456777776554

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.76  E-value=2.5e-17  Score=115.25  Aligned_cols=136  Identities=18%  Similarity=0.228  Sum_probs=105.3

Q ss_pred             cCCCCceEEeC-CeEEEcCCCCCCCe-EEEEEeccCCcce-eEEEEEEEe----cCceEEeCCCcEEEecCCcEEEEEEe
Q psy11131          6 VLPGPRTRVLG-PILAIEGVTAEDSG-TYRCSSSNIGGEA-TAEVRLQVS----TPYRVDVNPPLLSVHLDGSANFQCEI   78 (150)
Q Consensus         6 ~~~~~~~~~~~-~~l~i~~~~~~d~G-~Y~C~~~~~~~~~-~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~   78 (150)
                      +..+.++.+.. +.|.|.+++.+|+| .|+|.+.+..+.. +..+.|.|.    .+|.+...+....+.+|+.+.|.|.+
T Consensus       156 l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~  235 (524)
T 2ec8_A          156 LPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTI  235 (524)
T ss_dssp             CCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEE
T ss_pred             cCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEE
Confidence            44455666654 78999999999999 9999999876554 446788886    56777777777789999999999999


Q ss_pred             c-CCCCCCcE-EEEeecCccc--CCCc-----------ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         79 T-PYDSGPYL-IAWFKDGRQI--PGRT-----------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        79 ~-~p~~~~~~-~~w~~~~~~~--~~~~-----------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      . .|   .+. +.|++++..+  ....           ....|.|.++..+|.|.|.|.+.|..| .....+.|.|..+|
T Consensus       236 ~g~p---~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g-~~~~~~~l~V~~~p  311 (524)
T 2ec8_A          236 KDVS---SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG-SANVTTTLEVVDKG  311 (524)
T ss_dssp             EESS---TTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSC-EEEEEEEEEEESSC
T ss_pred             ecCC---CcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCC-ceEEEEEEEEeccC
Confidence            9 77   665 9999988763  2111           157899999999999999999999998 56668888888776


Q ss_pred             cc
Q psy11131        144 NI  145 (150)
Q Consensus       144 ~~  145 (150)
                      .+
T Consensus       312 ~~  313 (524)
T 2ec8_A          312 FI  313 (524)
T ss_dssp             EE
T ss_pred             ce
Confidence            54

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.76  E-value=3e-17  Score=105.20  Aligned_cols=135  Identities=20%  Similarity=0.320  Sum_probs=93.5

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec---------------CceEEeCCCcEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST---------------PYRVDVNPPLLSVH   67 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~---------------~~~~~~~~~~~~~~   67 (150)
                      .|+.+..      .+|.|.+++.+|+|.|+|.+.+..+.. .....|.|..               ++.+...+....+.
T Consensus        67 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~  146 (253)
T 3uzq_A           67 GKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVS  146 (253)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEEC
T ss_pred             CcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEe
Confidence            5666553      249999999999999999999854443 3456777774               34455556667889


Q ss_pred             cCCcEEEEEEec-CCCCCCc----EEEEeecC--cccC------------CCcc--------eeeEEEccCCCCCCceEE
Q psy11131         68 LDGSANFQCEIT-PYDSGPY----LIAWFKDG--RQIP------------GRTS--------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p~~~~~----~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~~g~y~  120 (150)
                      +|+.+.|.|.+. .+   .+    .+.|+++.  ....            ...+        ...|.|.++..+|+|.|.
T Consensus       147 ~G~~v~L~C~~~~~~---~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~  223 (253)
T 3uzq_A          147 LGQRATISCRASENV---DRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYF  223 (253)
T ss_dssp             TTSCEEEEEEESSCC---EETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCCCEEEEEEecCcc---ccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEE
Confidence            999999999998 76   65    89999842  2111            0001        346999999999999999


Q ss_pred             EEEEeCCCCceeeeEEEEEcCcCcccc
Q psy11131        121 CIARRSDGDVAQGSAELQLGGTRNIKH  147 (150)
Q Consensus       121 C~~~~~~g~~~~~~~~l~v~~~p~~~~  147 (150)
                      |.+.|..+.....-..|.|.+.++...
T Consensus       224 C~~~n~~~~~fg~gt~l~v~~~~~~~~  250 (253)
T 3uzq_A          224 CQRSNEVPWTFGGGTKLEIKRPLEHHH  250 (253)
T ss_dssp             EEECSSSSCCBCCCEEEEECCC-----
T ss_pred             EEEccCCCcEECCCEEEEEcCCCCCcc
Confidence            999986543344455677777665543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.76  E-value=2.5e-17  Score=107.28  Aligned_cols=118  Identities=24%  Similarity=0.308  Sum_probs=94.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEecCCCCCC-cEEEEe-ecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGP-YLIAWF-KDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~-~~~~w~-~~~   94 (150)
                      +.|.|.+++.+|+|.|+|.+.+  |. ...+.|.|..++.....+....+.+|+.+.|.|.+..|   . +.+.|+ +++
T Consensus        57 ~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p---~~~~v~W~~~~g  130 (290)
T 2o26_X           57 NEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDP---QVSQYSLIECDG  130 (290)
T ss_dssp             SEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSCC---SCEEEEEEETTS
T ss_pred             ceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCCC---CCceEEEEeCCC
Confidence            7899999999999999999999  43 77788888876655555666788899999999998866   6 999995 677


Q ss_pred             cccCCCcc-----eeeEEEccCCCCCCc-eEEEEEEeCCCCceeeeEEEEEc
Q psy11131         95 RQIPGRTS-----STSLVINPVGREDRG-IYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        95 ~~~~~~~~-----~~~l~~~~~~~~~~g-~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      ..+.....     ...|.|.++..+|.| .|.|.+.|..+...+..+.+.|.
T Consensus       131 ~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          131 KSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR  182 (290)
T ss_dssp             CCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence            66654322     357999999999999 99999999865333445777765

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=8.2e-17  Score=98.35  Aligned_cols=116  Identities=19%  Similarity=0.323  Sum_probs=89.7

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee---c
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK---D   93 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~---~   93 (150)
                      .|.|.  +.+|+|.|+|.+.+.   ......|.|..+|.+...+....+.+|+.+.|.|.+. .|.  .+.+.|++   +
T Consensus        52 ~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~i~W~~~~~~  124 (184)
T 3b5h_A           52 EFKVD--SDDQWGEYSCVFLPE---PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPP--VTDWAWYKITDS  124 (184)
T ss_dssp             EEEEC--GGGCCEEEEEEEEST---TSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSC--CCEEEEEECCSS
T ss_pred             EEEEe--chhhCeEEEEEEECC---cCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCC--CCeEEEEEcCCC
Confidence            45555  689999999999973   3456788888888877777777889999999999998 551  48999999   4


Q ss_pred             Ccc-cCCCc--c--------eeeEEEccCC-CCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         94 GRQ-IPGRT--S--------STSLVINPVG-REDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        94 ~~~-~~~~~--~--------~~~l~~~~~~-~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      +.. +....  +        ...|.|.++. ..|.|.|.|.+.|..| .....+.|.|.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g-~~~~~~~l~V~~  183 (184)
T 3b5h_A          125 EDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG-SDQAIITLRVRS  183 (184)
T ss_dssp             SCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTE-EEEEEEEEEEC-
T ss_pred             CCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCC-cceEEEEEEEec
Confidence            433 32211  1        2489999999 8999999999999999 567778887753

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.76  E-value=4.6e-17  Score=101.65  Aligned_cols=124  Identities=17%  Similarity=0.304  Sum_probs=86.5

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcce----eEEEEEEEecC---ceEEeCCCcEEEecCCcEEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGEA----TAEVRLQVSTP---YRVDVNPPLLSVHLDGSANFQ   75 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~---~~~~~~~~~~~~~~g~~~~l~   75 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..+..    ...+.|.|.+.   |.+.. +.  .+.+|+.+.|.
T Consensus        68 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~  144 (214)
T 2zg1_A           68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLS  144 (214)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEE
T ss_pred             cCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEE
Confidence            35676643      379999999999999999998764221    24677888763   33322 22  25689999999


Q ss_pred             EEec-C----CCCCCcEEEEeecCcccCCCc--ceeeEEEccCCCCCCceEEEEEEeCCCC-ceeeeEEEE
Q psy11131         76 CEIT-P----YDSGPYLIAWFKDGRQIPGRT--SSTSLVINPVGREDRGIYQCIARRSDGD-VAQGSAELQ  138 (150)
Q Consensus        76 C~~~-~----p~~~~~~~~w~~~~~~~~~~~--~~~~l~~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~  138 (150)
                      |.+. .    |   .|.+.|++++.......  ....|.|..+..+|.|.|+|.+.|..+. ..+.++.|.
T Consensus       145 C~~~~~~~~~p---~p~v~W~~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~  212 (214)
T 2zg1_A          145 CSLPGSCEAGP---PLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN  212 (214)
T ss_dssp             EECTTCCSCSS---CCEEEEESSTTSSSCSSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred             EEeccCCCCCC---CceEEEeCCCCccCCCCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence            9997 4    6   88999999876532211  1578999999889999999999997541 234444443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.75  E-value=2.1e-17  Score=102.97  Aligned_cols=120  Identities=15%  Similarity=0.203  Sum_probs=87.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCce-EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~   93 (150)
                      .+|.|.+++.+|+|.|.|.+.+..+. ......+.+..++. .........+..+..+.+.|.+. .|   .|.+.|+++
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p---~p~i~W~~~  155 (218)
T 4frw_A           79 GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSP---APSVTWDTE  155 (218)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBS---CCEEEEEES
T ss_pred             EEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCc---CceEEEEEC
Confidence            56999999999999999998875443 33334444443322 22333445566788899999999 88   899999998


Q ss_pred             CcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         94 GRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        94 ~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      +..+.....         .+.|.|..+..+|.|.|+|.|.|..| .....+.+.|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g-~~~~~~t~~v~  210 (218)
T 4frw_A          156 VKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGL-LQDQRITHILH  210 (218)
T ss_dssp             SCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTC-SSCEEEEEECC
T ss_pred             CcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCC-CeEEEEEEEEE
Confidence            765532211         45799999999999999999999998 34555555554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.75  E-value=2.4e-17  Score=105.73  Aligned_cols=119  Identities=24%  Similarity=0.380  Sum_probs=92.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec-CCCCCC-c----E
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGP-Y----L   87 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~-~----~   87 (150)
                      +.|.|.+++.+|+|.|+|.+.+..+..+..+.|.|..   ++.+...+ ...+.+|+.+.|.|.+. .|   . +    .
T Consensus       131 ~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p---~~p~~~~~  206 (262)
T 3rjd_A          131 SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLL---QRPGLQLY  206 (262)
T ss_dssp             CCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCC---C-----EE
T ss_pred             CeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCC---CCCCccEE
Confidence            6899999999999999999999887777888888885   34444444 44578899999999998 66   3 3    4


Q ss_pred             EEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCce--eeeEEEEE
Q psy11131         88 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVA--QGSAELQL  139 (150)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~--~~~~~l~v  139 (150)
                      +.|++++..+........|.|..+..+|.|.|.|.+.|..|...  +..+.+.|
T Consensus       207 ~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V  260 (262)
T 3rjd_A          207 FSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV  260 (262)
T ss_dssp             EEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECE
T ss_pred             EEEEeCCcEecccCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEE
Confidence            78888888765433356899999999999999999999998422  33455544

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.75  E-value=3e-17  Score=106.68  Aligned_cols=122  Identities=20%  Similarity=0.306  Sum_probs=92.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce-EEeCCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEee-
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFK-   92 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~-   92 (150)
                      ..|.|.+++.+|+|.|+|.+.+..+..+..+.|.|..++. +...+....+.+|+.+.|.|.+. .+   .+ .+.|++ 
T Consensus        51 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~---~~~~v~W~~~  127 (289)
T 3ejj_X           51 STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA---LKDSVSLMRE  127 (289)
T ss_dssp             CEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGG---GGGSEEEEEG
T ss_pred             cEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCC---cceEEEEEec
Confidence            7899999999999999999998877778888999987654 45556777889999999999998 55   44 499986 


Q ss_pred             cCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         93 DGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        93 ~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      ++..+.....     ...|.|.++...|.|.|.|.+.+......+..+.|.|..
T Consensus       128 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~  181 (289)
T 3ejj_X          128 GGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR  181 (289)
T ss_dssp             GGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEES
T ss_pred             CCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEE
Confidence            5544433322     457999999999999999999954332566777888873

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.74  E-value=6.6e-17  Score=103.79  Aligned_cols=135  Identities=19%  Similarity=0.273  Sum_probs=90.2

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCC----cceeEEEEEEEecC--------------ceEEeCCCcE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIG----GEATAEVRLQVSTP--------------YRVDVNPPLL   64 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~--------------~~~~~~~~~~   64 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..    ......+.|.|..+              +.+...+...
T Consensus        72 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~  151 (257)
T 3gkz_A           72 KSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIM  151 (257)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEE
T ss_pred             cccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceE
Confidence            35666653      269999999999999999998852    12234467777754              3455556667


Q ss_pred             EEecCCcEEEEEEec-CCCCCCc-EEEEeec--CcccCC------------Ccc--------eeeEEEccCCCCCCceEE
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPY-LIAWFKD--GRQIPG------------RTS--------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~--~~~~~~------------~~~--------~~~l~~~~~~~~~~g~y~  120 (150)
                      .+.+|+.+.|.|.+. .+   .+ .+.|++.  +.....            ..+        ...|.|.++..+|+|.|.
T Consensus       152 ~v~~G~~v~L~C~~~~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  228 (257)
T 3gkz_A          152 SASPGEKVTLTCSASSSV---SSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYF  228 (257)
T ss_dssp             EECTTCCEEEEEEESSCC---CGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             EEeCCCcEEEEEEEccCc---cceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence            889999999999998 66   66 8999874  222110            000        346999999999999999


Q ss_pred             EEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131        121 CIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       121 C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      |.+.+........-..|.|...++..
T Consensus       229 C~~~~~~~~~fg~gt~l~v~~~~~~~  254 (257)
T 3gkz_A          229 CHQWSSFPFTFGSGTKLEIKRAPHHH  254 (257)
T ss_dssp             EEECSSSSCEECCCEEEEECCC----
T ss_pred             EEEccCCceEEcCCEEEEEEeCCCCC
Confidence            99987543222333456666655443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=108.20  Aligned_cols=115  Identities=22%  Similarity=0.310  Sum_probs=86.4

Q ss_pred             EEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe---------------------cCceEEeCCCcEEEecCCcEEEEEE
Q psy11131         19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---------------------TPYRVDVNPPLLSVHLDGSANFQCE   77 (150)
Q Consensus        19 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~~~~~~~g~~~~l~C~   77 (150)
                      |.|.+++.+|+|.|+|.+.+..  ......+.+.                     .+|.+.. +....+.+|+.+.|.|.
T Consensus       168 L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~v~~G~~~~l~C~  244 (312)
T 2y23_A          168 MFMEKLQDEDEGTYTFQLQDGK--ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKCK  244 (312)
T ss_dssp             EEESCCCGGGCEEEEEEEESSS--CEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE-EEEEEEETTTEEEEEEE
T ss_pred             EEEccCCcccCEeEEEEEEeCC--ceEEEEEEEcchhhhhhcccccccccchhhccCCceee-cceEEEeCCCEEEEEEE
Confidence            9999999999999999997643  3333334432                     1122221 12356789999999999


Q ss_pred             ec-CCCCCCc-EEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         78 IT-PYDSGPY-LIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        78 ~~-~p~~~~~-~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      +. .|   .+ .+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|..| .....+.|.+.
T Consensus       245 ~~~~p---~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~i~  311 (312)
T 2y23_A          245 VANIK---KETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG-KDKSRLKLVDE  311 (312)
T ss_dssp             EESCC---SSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTC-CEEEEEEECSC
T ss_pred             EcCCC---CCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCC-ceeeeeEEEec
Confidence            99 87   76 9999999877652221      36899999999999999999999999 57777777653

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.74  E-value=4.4e-17  Score=104.50  Aligned_cols=119  Identities=15%  Similarity=0.300  Sum_probs=94.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~   94 (150)
                      ..|.|.+++.+|+|.|+|.+.+..+.  ..+.|.|..++... .+....+.+|+.+.|.|.+.  .|   .+.+.|++++
T Consensus        48 ~~l~i~~~~~~d~G~Y~C~~~~~~~s--~~~~l~v~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~p---~~~v~W~~~g  121 (262)
T 3rjd_A           48 PSYRITSASVNDSGEYRCQRGLSGRS--DPIQLEIHRGWLLL-QVSSRVFTEGEPLALRCHAWKDKL---VYNVLYYRNG  121 (262)
T ss_dssp             SEEEESSCCGGGCEEEEEEESSSCCC--CCEEEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCC---CEEEEEEETT
T ss_pred             CeEEEecCCcccCeEEEEEEecCCcc--ccEEEEEeccceEe-cCCCeEEecCCeEEEEEEccCCCC---CceEEEEECC
Confidence            67999999999999999999886543  35567777654433 33345678999999999994  77   8999999998


Q ss_pred             cccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         95 RQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      ..+........|.|.++...|.|.|.|.+.|..+ ..+..+.+.|...
T Consensus       122 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~V~~~  168 (262)
T 3rjd_A          122 KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR-YTSAGISVTVKEL  168 (262)
T ss_dssp             EEEEEEEECCCEEESSCCGGGCEEEEEEEESSSE-EEEECEEEEEECS
T ss_pred             ccccccCCCCeEEEEECChhhCEEEEEEEeCCCC-ccccceEEEeccC
Confidence            8765443357899999999999999999999886 5777788888763

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.74  E-value=5.9e-18  Score=110.17  Aligned_cols=124  Identities=24%  Similarity=0.267  Sum_probs=94.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce-EEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeec-C
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKD-G   94 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~-~   94 (150)
                      +.|.|.+++.+|+|.|+|.+.+..+..+..+.|.|..++. +...+....+.+|+.+.|.|.+..|. ..+.+.|+++ +
T Consensus        51 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~~v~W~~~~~  129 (292)
T 4dkd_C           51 SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPV-LEAGVSLVRVRG  129 (292)
T ss_dssp             EEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGG-GGSSEEEEEGGG
T ss_pred             EEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCC-cceeEEEEecCC
Confidence            5899999999999999999999877778888899987665 34556677889999999999998330 0378999987 4


Q ss_pred             cccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         95 RQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        95 ~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      ..+.....     ...|.|.++...|.|.|.|.+.|..+...+..+.|.|..
T Consensus       130 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          130 RPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             CCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             CccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            43332222     345999999999999999999988774455578888876

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.74  E-value=7.9e-17  Score=106.61  Aligned_cols=134  Identities=14%  Similarity=0.188  Sum_probs=100.3

Q ss_pred             CCCceEEe-----CCeEEEcCCCCCCCeEEEEE-eccCCcceeEEEEEEEecCceEE--eCCCcEEEecC---CcEEEEE
Q psy11131          8 PGPRTRVL-----GPILAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVSTPYRVD--VNPPLLSVHLD---GSANFQC   76 (150)
Q Consensus         8 ~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~-~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~~g---~~~~l~C   76 (150)
                      ...|+.+.     ..+|.|.+++.+|+|.|+|. ..+..+.....+.|.|..+|.+.  ..+....+.+|   +.+.|.|
T Consensus        78 ~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C  157 (331)
T 3u83_A           78 YRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATC  157 (331)
T ss_dssp             CTTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEE
T ss_pred             cCCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEE
Confidence            34666664     27899999999999999998 55556777888899999877653  34556677888   7799999


Q ss_pred             E-ec-CCCCCCcEEEEeecCcccC-------CCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         77 E-IT-PYDSGPYLIAWFKDGRQIP-------GRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        77 ~-~~-~p~~~~~~~~w~~~~~~~~-------~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      . .. .|   .+.+.|+++.....       ....   ...|.+..+...|.|.|.|.+.|..| ..+.++.|.|..+|.
T Consensus       158 ~~~~~~p---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~-~~~~~~~l~V~~~P~  233 (331)
T 3u83_A          158 TSANGKP---PSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMD-RFKESLTLNVQYEPE  233 (331)
T ss_dssp             EEEEEBS---CCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTE-EEEEEEECCEEEEEE
T ss_pred             EecCCcC---CceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCC-cceeeEEEEEecCCe
Confidence            8 55 88   89999998532111       1111   35688888899999999999999987 567777777766654


Q ss_pred             c
Q psy11131        145 I  145 (150)
Q Consensus       145 ~  145 (150)
                      .
T Consensus       234 ~  234 (331)
T 3u83_A          234 V  234 (331)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.74  E-value=7.3e-17  Score=90.64  Aligned_cols=86  Identities=23%  Similarity=0.388  Sum_probs=72.6

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.
T Consensus        13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           13 PPCFLRFPRPVRVVSGAEAELKCVVLGEP---PPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCcEEEEEEEEEec---CCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            45666667778899999999999999 99   999999999988765443        3579999999999999999999


Q ss_pred             eCCCCceeeeEEEEEcCcC
Q psy11131        125 RSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p  143 (150)
                      |..| ..+..+.|.|.++|
T Consensus        90 N~~G-~~~~~~~l~V~~pP  107 (107)
T 3knb_B           90 NAAG-EAYAAAAVTVLEPP  107 (107)
T ss_dssp             ETTE-EEEEEEEEEEEC--
T ss_pred             ECCC-EEEEEEEEEEEcCC
Confidence            9999 67788999998765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.74  E-value=1.9e-16  Score=106.68  Aligned_cols=133  Identities=20%  Similarity=0.187  Sum_probs=99.1

Q ss_pred             CCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcce-----eEEEEEEEec------CceEEe-CCCcEEEecCCcEEE
Q psy11131          9 GPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEA-----TAEVRLQVST------PYRVDV-NPPLLSVHLDGSANF   74 (150)
Q Consensus         9 ~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~------~~~~~~-~~~~~~~~~g~~~~l   74 (150)
                      +.+.....  +.|.|.+++.+|+|.|+|.+.+..+..     +....|.|..      +|.+.. .+....+.+|+.+.|
T Consensus       148 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l  227 (382)
T 1cs6_A          148 DGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTL  227 (382)
T ss_dssp             CSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEE
T ss_pred             CceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEE
Confidence            34444433  789999999999999999998865322     1224455432      333333 345677889999999


Q ss_pred             EEEec-CCCCCCcEEEEeecCcccCCCc--ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         75 QCEIT-PYDSGPYLIAWFKDGRQIPGRT--SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        75 ~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .|.+. .|   .+.+.|++++..+....  ....|.|.++..+|.|.|.|.+.|..| .....+.|.|..+|..
T Consensus       228 ~C~~~g~p---~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~  297 (382)
T 1cs6_A          228 ECFAFGNP---VPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG-RDTYQGRIIIHAQPDW  297 (382)
T ss_dssp             ECEEEEES---CCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEEEEEE
T ss_pred             EEEEccCC---CCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCC-eEEEEEEEEEecCCCc
Confidence            99999 88   89999999877654321  157899999999999999999999988 5777788888766543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.73  E-value=1.3e-16  Score=103.77  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=87.4

Q ss_pred             CCCCeEEEEEeccCCcc-eeEEEEEEEec--CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc
Q psy11131         26 AEDSGTYRCSSSNIGGE-ATAEVRLQVST--PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT  101 (150)
Q Consensus        26 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~  101 (150)
                      ..|+|.|+|.+.+..+. .+....|.|..  ++.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++.......
T Consensus       150 ~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~v~W~~~~~~~~~~~  226 (289)
T 3mjg_X          150 IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNE---VVNFEWTYPRKESGRLV  226 (289)
T ss_dssp             CCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCS---SBEEEEECTTSSSSCCC
T ss_pred             eccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCC---CcceEEEcCCccCCCcc
Confidence            67999999999876544 33445666664  44454444446688999999999999 99   99999997655332210


Q ss_pred             -------------ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131        102 -------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       102 -------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                                   ....|.|.++..+|.|.|.|.+.|..| ....++.|.|.+.|.
T Consensus       227 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVN-DHQDEKAINITVVES  281 (289)
T ss_dssp             CCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTT-TEEEEEEEEEEEEC-
T ss_pred             cccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCC-CceeEEEEEEEEEec
Confidence                         146899999999999999999999999 678888888876653

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.73  E-value=1.9e-16  Score=98.05  Aligned_cols=113  Identities=14%  Similarity=0.232  Sum_probs=79.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-----eEEEEEEEecC---ceEEeCCCcEEEecCCcEEEEEEe-c-CCCCCCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-----TAEVRLQVSTP---YRVDVNPPLLSVHLDGSANFQCEI-T-PYDSGPY   86 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~---~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~~~~   86 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|..+   |.+..    .....|+.+.|.|.+ . .|   .|
T Consensus        65 ~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~----~~~~~g~~~~l~C~~~~g~P---~p  137 (201)
T 1dr9_A           65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISD----FEIPTSNIRRIICSTSGGFP---EP  137 (201)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE----EECSSTTEEEEEEEEEEESS---CE
T ss_pred             cEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEe----ccCCCCCeEEEEEecCCccC---CC
Confidence            689999999999999999999865543     35677777764   22211    111457889999999 4 88   89


Q ss_pred             EEEEeecCcccCCCcc------e-ee---EEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         87 LIAWFKDGRQIPGRTS------S-TS---LVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        87 ~~~w~~~~~~~~~~~~------~-~~---l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      .+.|++++..+.....      . ..   ..+..+...|.|.|.|.|.|..| ..+..+.+
T Consensus       138 ~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~-~~s~~~~~  197 (201)
T 1dr9_A          138 HLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHL-RVNQTFNW  197 (201)
T ss_dssp             EEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTC-CEEEEEEE
T ss_pred             EEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcc-eeeeEEec
Confidence            9999999877653321      1 11   12234456799999999999988 45555443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.73  E-value=1.5e-16  Score=107.77  Aligned_cols=134  Identities=20%  Similarity=0.251  Sum_probs=100.0

Q ss_pred             CCCCceEEeC-CeEEEcCCCCCC-CeEEEEEeccCCcce---eEEEEEEEecCc-------eEEeCC---CcEEEecCCc
Q psy11131          7 LPGPRTRVLG-PILAIEGVTAED-SGTYRCSSSNIGGEA---TAEVRLQVSTPY-------RVDVNP---PLLSVHLDGS   71 (150)
Q Consensus         7 ~~~~~~~~~~-~~l~i~~~~~~d-~G~Y~C~~~~~~~~~---~~~~~l~v~~~~-------~~~~~~---~~~~~~~g~~   71 (150)
                      ..+.++.... +.|.|.++...| .|.|+|.+.+..+..   .....+.|...+       .+....   ....+.+|+.
T Consensus       160 ~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~  239 (404)
T 3p3y_A          160 TQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMD  239 (404)
T ss_dssp             CCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSC
T ss_pred             CCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCC
Confidence            3445555544 789999999999 599999999876542   223455554321       111111   2345789999


Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      +.|.|.+. .|   .+.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.|..| .....+.|.|..+|.
T Consensus       240 v~l~C~~~g~p---~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~  314 (404)
T 3p3y_A          240 LLLECIASGVP---TPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG-SIRHTISVRVKAAPY  314 (404)
T ss_dssp             EEEECCBCCSS---CCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSC-EEEEEEEEEEEEEEE
T ss_pred             EEEEEEECCCC---CCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCC-cEEEEEEEEEeCCCe
Confidence            99999998 88   889999999887754432     46899999999999999999999998 577788888877654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.73  E-value=1.6e-17  Score=109.28  Aligned_cols=120  Identities=19%  Similarity=0.251  Sum_probs=92.7

Q ss_pred             CCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec-CceEEeCC---CcEEEecCCcEEEEEEe----
Q psy11131          7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST-PYRVDVNP---PLLSVHLDGSANFQCEI----   78 (150)
Q Consensus         7 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~-~~~~~~~~---~~~~~~~g~~~~l~C~~----   78 (150)
                      ..+.++...+++|.|.+++.+|+|.|+|.+.+..+.......+.+.. +|.+...+   ....+..|+.+.|.|.+    
T Consensus        52 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~  131 (315)
T 1itb_B           52 EQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFF  131 (315)
T ss_dssp             CTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTT
T ss_pred             ccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEeccccc
Confidence            34567777778999999999999999999999877766665665543 22222221   12457889999999998    


Q ss_pred             --c-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEE-eCCCC
Q psy11131         79 --T-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIAR-RSDGD  129 (150)
Q Consensus        79 --~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~-~~~g~  129 (150)
                        . .|   .+.+.|++++..+.....     ...|.|.++...|.|.|.|.+. |..|.
T Consensus       132 ~~~g~p---~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~  188 (315)
T 1itb_B          132 KNENNE---LPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK  188 (315)
T ss_dssp             CTTTTC---CCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             ccCCCC---CCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCc
Confidence              6 77   889999999987754322     5689999999999999999999 77773

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.73  E-value=7.4e-18  Score=105.18  Aligned_cols=117  Identities=21%  Similarity=0.302  Sum_probs=85.9

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCc--ceeEEEEEEEe----cCceEEeCCCcEEEecCCcEEEEEEec
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVS----TPYRVDVNPPLLSVHLDGSANFQCEIT   79 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~   79 (150)
                      .|+.+..    .+|.|.+++.+|+|.|.|.+.+..+  .....+.|.|.    .+|.+...+.......|+.+.|.|.+.
T Consensus        57 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  136 (211)
T 3tv3_L           57 DRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLIS  136 (211)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEE
T ss_pred             CcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEee
Confidence            5665433    4799999999999999999998766  34455778887    445554444333334799999999998


Q ss_pred             -CC-CCCCcEEEEeecCcccCCCc-----------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 -PY-DSGPYLIAWFKDGRQIPGRT-----------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 -~p-~~~~~~~~w~~~~~~~~~~~-----------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                       .+ .  .+.+.|++++..+....           .   ...|.+..+..+|.|.|.|.+.|..+
T Consensus       137 g~~p~--~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~  199 (211)
T 3tv3_L          137 DFYPG--AVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  199 (211)
T ss_dssp             EEBSS--CCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             eecCC--CeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence             42 1  58999999988764311           0   25688888888889999999999876

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.73  E-value=7.5e-17  Score=105.85  Aligned_cols=126  Identities=16%  Similarity=0.195  Sum_probs=92.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC-CcceeEEEEEEEecCceEE--eCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI-GGEATAEVRLQVSTPYRVD--VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~--~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~   91 (150)
                      .+|.|.+++.+|+|.|+|.+.+. .+.......+.+...+...  ..+.......|+.+.+.|...  .|   .+.+.|+
T Consensus        74 ~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P---~~~i~W~  150 (308)
T 4fom_A           74 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKP---VAHIDWE  150 (308)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBS---CCEEEEC
T ss_pred             eEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcC---CceEEEE
Confidence            57999999999999999999875 4566667777777554432  334444455678899999865  88   8999999


Q ss_pred             ecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCC-ceeeeEEEEEcCcCcc
Q psy11131         92 KDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGD-VAQGSAELQLGGTRNI  145 (150)
Q Consensus        92 ~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~v~~~p~~  145 (150)
                      +++..+.....         .+.|.+..+...|.|.|.|.+.|..+. .....+.|.|..+|..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~  214 (308)
T 4fom_A          151 GDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEV  214 (308)
T ss_dssp             CCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEE
T ss_pred             ECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCee
Confidence            98876643221         357889999999999999999998763 2344555556555543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.73  E-value=1.4e-16  Score=101.63  Aligned_cols=129  Identities=19%  Similarity=0.270  Sum_probs=90.3

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEecC---------------ceEEeCCCcEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVSTP---------------YRVDVNPPLLS   65 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~---------------~~~~~~~~~~~   65 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|+|.+.+..+.  ....+.|.|...               +.+...+....
T Consensus        67 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (247)
T 2ghw_B           67 KGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLS  146 (247)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEE
T ss_pred             cCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEE
Confidence            35666643      37999999999999999999886322  223457777753               22334455667


Q ss_pred             EecCCcEEEEEEec-CCCCCCcEEEEee--cCcccC------------CCc--------ceeeEEEccCCCCCCceEEEE
Q psy11131         66 VHLDGSANFQCEIT-PYDSGPYLIAWFK--DGRQIP------------GRT--------SSTSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        66 ~~~g~~~~l~C~~~-~p~~~~~~~~w~~--~~~~~~------------~~~--------~~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +.+|+.+.|.|.+. .|   .+.+.|++  ++..+.            ...        ....|.|.++..+|.|.|.|.
T Consensus       147 v~~G~~v~L~C~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  223 (247)
T 2ghw_B          147 LSPGERATLSCRASQSV---RSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQ  223 (247)
T ss_dssp             ECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEE
T ss_pred             ecCCCcEEEEEEeCCCc---cceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEE
Confidence            88999999999999 77   78999998  443321            000        134699999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEc
Q psy11131        123 ARRSDGDVAQGSAELQLG  140 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~  140 (150)
                      +.+...........|.|.
T Consensus       224 a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          224 QRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             ECSSSSCEECCCEEEEEC
T ss_pred             EccCCCceEcCCEEEEEC
Confidence            997543223334455554

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.73  E-value=4.1e-16  Score=111.51  Aligned_cols=131  Identities=17%  Similarity=0.224  Sum_probs=99.3

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccC-CcceeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCC
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNI-GGEATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSG   84 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~   84 (150)
                      +|+.+.. ++|.|.+++.+|+|.|+|.+.+. .+.......|.|..   +|.+.. .....+..|+.+.|.|.+..|   
T Consensus        63 gr~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~p---  138 (642)
T 1e07_A           63 GREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS-NNSKPVEDKDAVAFTCEPETQ---  138 (642)
T ss_pred             CceeeccCCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEc-cCceeEecCCcEEEEEECCCC---
Confidence            3544443 78999999999999999998875 34446667788875   233332 233557789999999998766   


Q ss_pred             CcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         85 PYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        85 ~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      .+.+.|++++..+....+      ...|.|.++...|.|.|.|.+.|..|...+..+.|.|..+|+
T Consensus       139 ~~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  204 (642)
T 1e07_A          139 DATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPD  204 (642)
T ss_pred             CeeEEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCC
Confidence            899999999887754432      458999999999999999999998875456677888875543

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.73  E-value=1.5e-17  Score=114.32  Aligned_cols=117  Identities=17%  Similarity=0.196  Sum_probs=93.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc-c---eeEEEEEEEecCceEEeCC--CcEEEecCCcEEEEEEec-CCCCCCcEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG-E---ATAEVRLQVSTPYRVDVNP--PLLSVHLDGSANFQCEIT-PYDSGPYLIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~-~---~~~~~~l~v~~~~~~~~~~--~~~~~~~g~~~~l~C~~~-~p~~~~~~~~   89 (150)
                      ..|.|.++..+|.|.|+|.+.|..+ .   ....+.|.|..+|.+...+  ....+.+|+.+.|.|.+. .|   .|.+.
T Consensus       327 ~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P---~p~i~  403 (450)
T 1z7z_I          327 AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNP---LPELK  403 (450)
T ss_dssp             CCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEES---CCEEE
T ss_pred             EEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCC---CCcEE
Confidence            5799999999999999999986543 3   3466788888877765543  556788999999999999 99   99999


Q ss_pred             EeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         90 WFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        90 w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      |++++..+....  ..+   .+..+|.|.|.|.|.|..| ..+..+.|.|.++
T Consensus       404 W~~~g~~~~~~g--~~~---~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~~  450 (450)
T 1z7z_I          404 CLKDGTFPLPIG--ESV---TVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP  450 (450)
T ss_dssp             EEETTTEECCTT--SCE---ECCGGGCEEEEEEEEETTE-EEEEEEEEEEECC
T ss_pred             EEECCcccCCCC--CeE---eEehhhCeEEEEEEEeCCC-ceeEEEEEEEEcC
Confidence            999987443322  223   5778999999999999999 6788888888653

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.72  E-value=3.5e-16  Score=100.40  Aligned_cols=116  Identities=19%  Similarity=0.316  Sum_probs=85.5

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccC------------CcceeEEEEEEEecC---------------ce
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNI------------GGEATAEVRLQVSTP---------------YR   56 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~v~~~---------------~~   56 (150)
                      .|+.+..      .+|.|.+++.+|+|.|.|.+.+.            .......+.|.|...               +.
T Consensus        72 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~  151 (256)
T 3juy_B           72 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIV  151 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCC
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeE
Confidence            5777662      35999999999999999999886            222344567888763               34


Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCC-cEEEEeec--CcccC------------CCcc--------eeeEEEccCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGP-YLIAWFKD--GRQIP------------GRTS--------STSLVINPVG  112 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~-~~~~w~~~--~~~~~------------~~~~--------~~~l~~~~~~  112 (150)
                      +...+....+.+|+.+.|.|.+. .+   . +.+.|++.  +....            ...+        ...|.|.++.
T Consensus       152 ~~~~~~~~~v~~G~~v~L~C~~~~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  228 (256)
T 3juy_B          152 LTQAPGTLSLSPGERATFSCRSSHSI---RSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVE  228 (256)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCC---TTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEECCCc---CCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCC
Confidence            45556677889999999999998 66   5 89999873  22111            0011        3469999999


Q ss_pred             CCCCceEEEEEEeCCC
Q psy11131        113 REDRGIYQCIARRSDG  128 (150)
Q Consensus       113 ~~~~g~y~C~~~~~~g  128 (150)
                      .+|+|.|.|.+.+...
T Consensus       229 ~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          229 PEDFALYYCQVYGASS  244 (256)
T ss_dssp             GGGCSEEEEEECCSSC
T ss_pred             HhHCEEEEEEEeeCCC
Confidence            9999999999987544

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.72  E-value=3.3e-16  Score=103.29  Aligned_cols=121  Identities=18%  Similarity=0.246  Sum_probs=89.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC-----cceeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG-----GEATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLI   88 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~   88 (150)
                      +.|.|.+++.+|+|.|+|.+.+..     +..+..+.|.|..   +|.+...+... +.+|+.+.|.|.+..+   .+.+
T Consensus        74 ~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~~---~~~~  149 (316)
T 3vh8_G           74 ESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDIM---FEHF  149 (316)
T ss_dssp             SCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESSC---CSEE
T ss_pred             EEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCCC---CcEE
Confidence            789999999999999999987532     2345567777764   34444444433 7899999999999744   6789


Q ss_pred             EEeecCcccCCCc---------ceeeEEEccCCCCCCceEEEEEEeCCCCc----eeeeEEEEEcC
Q psy11131         89 AWFKDGRQIPGRT---------SSTSLVINPVGREDRGIYQCIARRSDGDV----AQGSAELQLGG  141 (150)
Q Consensus        89 ~w~~~~~~~~~~~---------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~----~~~~~~l~v~~  141 (150)
                      .|++++..+....         ....|.|.++..+|.|.|.|.+.|..|..    .+..+.+.|..
T Consensus       150 ~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~  215 (316)
T 3vh8_G          150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG  215 (316)
T ss_dssp             EEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred             EEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC
Confidence            9999887654221         15689999999999999999999987621    25566777754

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.72  E-value=1.9e-16  Score=96.84  Aligned_cols=107  Identities=16%  Similarity=0.215  Sum_probs=79.5

Q ss_pred             CceEEe-C-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc
Q psy11131         10 PRTRVL-G-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY   86 (150)
Q Consensus        10 ~~~~~~-~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~   86 (150)
                      .|+.+. . ++|.|.+++.+|+|.|.|.+.+.. .....+.|.|.+++.    .... ...+..+.|.|.+. .|   .+
T Consensus        60 ~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~----~P~i-~~~~~~v~L~C~~~~gp---~p  130 (180)
T 2dru_A           60 DRVDLDKTNGALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVS----KPMI-YWECSNATLTCEVLEGT---DV  130 (180)
T ss_dssp             TTEEECTTTCCEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCC----CCEE-EEEGGGTEEEEECSSCT---TC
T ss_pred             CeEEEeCCCccEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCC----CCEE-EecCCCEEEEEEeCCCC---CC
Confidence            677773 3 889999999999999999987765 556677888876421    1112 22446799999996 77   89


Q ss_pred             EEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         87 LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        87 ~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+.|++++..+.. .....+.+..  .+|.|.|+|.+.|..+
T Consensus       131 ~i~W~~~~~~l~~-~~~~~l~~~~--~~d~g~Y~C~a~N~~~  169 (180)
T 2dru_A          131 ELKLYQGKEHLRS-LRQKTMSYQW--TNLRAPFKCKAVNRVS  169 (180)
T ss_dssp             EEEEEETTEEEEE-ESSSEEEEEC--SCCSSCEEEEEEETTE
T ss_pred             EEEEEECCeECcC-CCCCEEEEEE--hhcCccEEEEEecCcC
Confidence            9999999887641 1134555532  7789999999999987

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.71  E-value=2.3e-16  Score=95.65  Aligned_cols=113  Identities=17%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc
Q psy11131         10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY   86 (150)
Q Consensus        10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~   86 (150)
                      .|+.+..  ++|.|.+++.+|+|.|.|.+.+..+  ...+.|.|.+++.    ........ ....|.|.+. .|   .|
T Consensus        51 ~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~--~~~~~L~V~~~~~----~p~i~~~~-~~~~L~C~~~~~p---~p  120 (171)
T 1ccz_A           51 NRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS----KPMIYWEC-SNATLTCEVLEGT---DV  120 (171)
T ss_dssp             TSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS--CEEEEEEEECCCC----CCEEEEET-TTTEEEEECSSCS---SC
T ss_pred             CcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC--cEEEEEEEECcCC----CCEEEEec-CCcEEEEEeCCCC---Cc
Confidence            4666643  8999999999999999999998766  6777888876521    11111111 1137899998 78   89


Q ss_pred             EEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEE
Q psy11131         87 LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE  136 (150)
Q Consensus        87 ~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~  136 (150)
                      .+.|++++..+.... ...+.+.  ...|.|.|.|.|.|..+ ..+..+.
T Consensus       121 ~i~W~~~~~~l~~~~-~~~l~~~--~~~~~g~Y~C~a~N~~~-~~~~~~~  166 (171)
T 1ccz_A          121 ELKLYQGKEHLRSLR-QKTMSYQ--WTNLRAPFKCKAVNRVS-QESEMEV  166 (171)
T ss_dssp             EEEEEETTEEEEEES-SSEEEEE--CSCCSSCEEEEEEETTE-EEEEEEC
T ss_pred             EEEEEECCEECcCCc-ceEEEEe--ccCCCceEEEEEEcccC-cccceeE
Confidence            999999987764322 2233333  36788999999999988 3444443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.71  E-value=5.2e-17  Score=107.09  Aligned_cols=121  Identities=16%  Similarity=0.263  Sum_probs=81.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-----eeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-----ATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLI   88 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~   88 (150)
                      +.|.|.+++.+|+|.|+|.+.|..+.     .+....|.|..   +|.+...+.. .+.+|+.+.|.|.+..|   .+.+
T Consensus       174 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~v~L~C~~~~~---~~~~  249 (316)
T 3vh8_G          174 ANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP-KVQAGESVTLSCSSRSS---YDMY  249 (316)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS-CCCTTSCCEEEEEESSC---CSEE
T ss_pred             EEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC-eecCCCcEEEEEECCCC---CcEE
Confidence            67999999999999999999987653     24556777763   3444443332 46789999999998866   7899


Q ss_pred             EEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCC----ceeeeEEEEEcCcC
Q psy11131         89 AWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGD----VAQGSAELQLGGTR  143 (150)
Q Consensus        89 ~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~----~~~~~~~l~v~~~p  143 (150)
                      .|++++..+.....         ...|.|.++.  |.|.|.|.+.|..+.    ..+..+.|.|.++|
T Consensus       250 ~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          250 HLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             EEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             EEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            99999876542110         3678888888  999999999986542    35778888888776

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.71  E-value=3.8e-16  Score=96.87  Aligned_cols=117  Identities=15%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC-----cceeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG-----GEATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLI   88 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~   88 (150)
                      +.|.|.+++.+|+|.|+|.+.+..     ...+..+.|.|.+   +|.+...+. ..+.+|+.+.|.|.+..+   .+.+
T Consensus        63 ~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~~---~~~~  138 (201)
T 1nkr_A           63 ANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRSS---YDMY  138 (201)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESSC---CSEE
T ss_pred             EEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCCC---CceE
Confidence            679999999999999999997532     1234556777774   344544443 367899999999998755   6789


Q ss_pred             EEeecCcccCCCc---------ceeeEEEccCCCCCCceEEEEEEeCC----CCceeeeEEEEE
Q psy11131         89 AWFKDGRQIPGRT---------SSTSLVINPVGREDRGIYQCIARRSD----GDVAQGSAELQL  139 (150)
Q Consensus        89 ~w~~~~~~~~~~~---------~~~~l~~~~~~~~~~g~y~C~~~~~~----g~~~~~~~~l~v  139 (150)
                      .|++++..+....         ....|.|.++.  |.|.|.|.+.+..    ....+..+.|.|
T Consensus       139 ~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~~~~~~s~~S~~~~l~V  200 (201)
T 1nkr_A          139 HLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKSSDPLLVSV  200 (201)
T ss_dssp             EEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             EEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCCCCCcCCCCCCCEEEEe
Confidence            9999987654321         14578888887  9999999998642    112345566655

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.71  E-value=2.4e-17  Score=103.24  Aligned_cols=116  Identities=18%  Similarity=0.258  Sum_probs=81.4

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCc-----ceeEEEEEEEec----CceEEeCCCcEEEecCCcEEEEE
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGG-----EATAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQC   76 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C   76 (150)
                      .|+.+..    .+|.|.+++.+|+|.|.|.+.+..+     .....+.|.|..    +|.+...+.......|+.+.|.|
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C  143 (218)
T 3s96_B           64 DRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVC  143 (218)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEE
T ss_pred             cceEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEE
Confidence            4665532    5699999999999999999988654     233456788873    34444333323334578899999


Q ss_pred             Eec--CCCCCCc-EEEEeecCcccCCCc----------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         77 EIT--PYDSGPY-LIAWFKDGRQIPGRT----------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        77 ~~~--~p~~~~~-~~~w~~~~~~~~~~~----------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+.  .|   .+ .+.|++++..+....          .   ...|.+.....+|.|.|+|.+.|..+
T Consensus       144 ~~~g~~p---~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~  208 (218)
T 3s96_B          144 LISNFSP---SGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGD  208 (218)
T ss_dssp             EEEEEBS---SCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTE
T ss_pred             EECcccC---CCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCC
Confidence            998  46   56 899999988765411          0   23466777777789999999999876

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.71  E-value=6e-19  Score=128.07  Aligned_cols=124  Identities=23%  Similarity=0.403  Sum_probs=0.0

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcce--eEEEEEEE--ecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQV--STPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK   92 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v--~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~   92 (150)
                      .|.|.++..+|+|.|+|.+.|..+..  +....|.|  ..+|.+...+....+.+|+.+.|.|.+. .|   .|.+.|++
T Consensus       626 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P---~p~v~W~k  702 (772)
T 3v2a_R          626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNP---PPQIMWFK  702 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccC---CCeEEEEE
Confidence            49999999999999999999954432  23344454  4566666555666788999999999999 89   89999999


Q ss_pred             cCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         93 DGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        93 ~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      ++..+.....      ...|.|.++..+|.|.|.|.|.|..| .....+.|.|.++|..
T Consensus       703 ~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V~~~p~~  760 (772)
T 3v2a_R          703 DNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG-CAKVEAFFIIEGAQEK  760 (772)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCc-ceeEEEEEEEECCCCc
Confidence            9887654422      56899999999999999999999999 5778899999887754

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.71  E-value=1.3e-16  Score=102.58  Aligned_cols=131  Identities=21%  Similarity=0.363  Sum_probs=90.4

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc-------c--eeEEEEEEEecCc---------------eEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG-------E--ATAEVRLQVSTPY---------------RVD   58 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~-------~--~~~~~~l~v~~~~---------------~~~   58 (150)
                      +.|+.+..      .+|.|.+++.+|+|.|.|.+.+..|       .  ....+.|.|...+               .+.
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~  143 (257)
T 1f3r_B           64 KSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLT  143 (257)
T ss_dssp             STTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSC
T ss_pred             CCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEE
Confidence            45776642      4899999999999999999998743       1  1234577887542               122


Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee--cCcccCC------------Ccc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK--DGRQIPG------------RTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~--~~~~~~~------------~~~--------~~~l~~~~~~~~~  115 (150)
                      ..+....+.+|+.+.|.|.+. .|   .+.+.|++  ++..+..            ..+        ...|.|.++..+|
T Consensus       144 ~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  220 (257)
T 1f3r_B          144 QSPSLLSASVGDRVTLSCKGSQNI---NNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPED  220 (257)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCC---BTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGG
T ss_pred             ccCCEEEEcCCCCEEEEEEECCcC---CCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhh
Confidence            234455678999999999998 77   78999998  4443210            011        3479999999999


Q ss_pred             CceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        116 RGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       116 ~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      +|.|.|.+.|.. .....-..|.|...+
T Consensus       221 ~G~Y~C~a~n~~-~~~g~gt~l~V~~~~  247 (257)
T 1f3r_B          221 VATYFCYQYNNG-YTFGAGTKLELKAAE  247 (257)
T ss_dssp             CSEEEEEEESSS-EEECCCCEECCSSSC
T ss_pred             CEEEEEEEeCCC-CeECCCEEEEEeCCC
Confidence            999999999864 122233455555543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.71  E-value=3.4e-17  Score=102.23  Aligned_cols=116  Identities=24%  Similarity=0.323  Sum_probs=84.8

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCccee-EEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec--
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT--   79 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~--   79 (150)
                      .|+.+..    .+|.|.+++.+|+|.|+|.+.+..+... ....|.|..   +|.+...+.......|+.+.|.|.+.  
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~  139 (213)
T 3d9a_L           60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  139 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             ccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeee
Confidence            5665543    3899999999999999999998765432 234677764   44544433222234688999999997  


Q ss_pred             CCCCCCc-EEEEeecCcccCCC-cc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 PYDSGPY-LIAWFKDGRQIPGR-TS--------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 ~p~~~~~-~~~w~~~~~~~~~~-~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|   .+ .+.|++++..+... ..              ...|.|.++..+|.|.|.|.|.|...
T Consensus       140 ~p---~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  201 (213)
T 3d9a_L          140 YP---KDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  201 (213)
T ss_dssp             BS---SCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred             cC---CceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccC
Confidence            45   44 89999998776544 00              24899999999999999999999765

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.71  E-value=3.8e-16  Score=102.41  Aligned_cols=120  Identities=15%  Similarity=0.243  Sum_probs=90.6

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec------------CceEEeCCC-cEEEe
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST------------PYRVDVNPP-LLSVH   67 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~------------~~~~~~~~~-~~~~~   67 (150)
                      ++..+.|+.+..    ..|.|.+++.+|+|.|+|.+.+..|... ...+.|..            +|.+...+. ...+.
T Consensus        42 ~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~  120 (312)
T 2y23_A           42 STEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL  120 (312)
T ss_dssp             ECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEEC
T ss_pred             ECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEe
Confidence            344556766654    5899999999999999999999877544 55566652            333333222 56788


Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +|+.+.|.|.+.  .|   .+.+.|++++..+.....          ...|.|.++..+|.|.|.|.+.+...
T Consensus       121 ~G~~v~l~C~~~~~~p---~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  190 (312)
T 2y23_A          121 EKGQVRFWMQAEKLSG---NAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA  190 (312)
T ss_dssp             SSSCEEEEEEESCCCS---SCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC
T ss_pred             eCCCEEEEEEEEeCCC---CCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc
Confidence            999999999997  57   899999999887765432          22399999999999999999986543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.71  E-value=2.2e-16  Score=101.63  Aligned_cols=122  Identities=16%  Similarity=0.273  Sum_probs=88.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC-----cceeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG-----GEATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLI   88 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~   88 (150)
                      +.|.|.+++.+|+|.|+|.+.+..     ...+..+.|.|.+   +|.+...+. ..+.+|+.+.|.|.+..+   .+.+
T Consensus        62 ~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~---~~~~  137 (257)
T 1b6u_A           62 ANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS---YDMY  137 (257)
T ss_dssp             EEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC---CSEE
T ss_pred             EEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC---CcEE
Confidence            679999999999999999987532     2235567778875   344444433 246799999999998743   5689


Q ss_pred             EEeecCcccCCCc---------ceeeEEEccCCCCCCceEEEEEEeCC----CCceeeeEEEEEcCcCc
Q psy11131         89 AWFKDGRQIPGRT---------SSTSLVINPVGREDRGIYQCIARRSD----GDVAQGSAELQLGGTRN  144 (150)
Q Consensus        89 ~w~~~~~~~~~~~---------~~~~l~~~~~~~~~~g~y~C~~~~~~----g~~~~~~~~l~v~~~p~  144 (150)
                      .|++++..+....         ....|.|.++.  |.|.|.|.+.+..    ....+..+.|.|.++|.
T Consensus       138 ~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          138 HLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             EEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             EEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence            9999987653211         14678899887  9999999999642    22456778898888754

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.70  E-value=5.8e-16  Score=99.43  Aligned_cols=109  Identities=18%  Similarity=0.278  Sum_probs=80.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc----eeEEEEEEEec--------------------CceEEeCCCcEEEecCCcE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE----ATAEVRLQVST--------------------PYRVDVNPPLLSVHLDGSA   72 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~g~~~   72 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+.    ....+.|.|..                    ++.+...+....+.+|+.+
T Consensus        76 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v  155 (256)
T 3tf7_C           76 FHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENV  155 (256)
T ss_dssp             EEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCE
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcE
Confidence            46999999999999999999886432    22345677765                    3455566777778899999


Q ss_pred             EEEEEecCCCCCCcEEEEeecCcccC--------------------------CCcceeeEEEccCCCCCCceEEEEEEeC
Q psy11131         73 NFQCEITPYDSGPYLIAWFKDGRQIP--------------------------GRTSSTSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        73 ~l~C~~~~p~~~~~~~~w~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .|.|.+...   .+.+.|++......                          .......|.|.++..+|+|.|.|.+.|.
T Consensus       156 ~L~C~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  232 (256)
T 3tf7_C          156 TLSCRQTNS---HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDA  232 (256)
T ss_dssp             EECEEECSC---CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEE
T ss_pred             EEEEEcCCC---ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCC
Confidence            999998733   56899987321100                          0011347999999999999999999987


Q ss_pred             CC
Q psy11131        127 DG  128 (150)
Q Consensus       127 ~g  128 (150)
                      .|
T Consensus       233 ~g  234 (256)
T 3tf7_C          233 PG  234 (256)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.70  E-value=6.7e-17  Score=104.16  Aligned_cols=117  Identities=18%  Similarity=0.220  Sum_probs=90.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC-Cccee---EEEEEEEecCceEEeC--CCcEEEecCCcEEEEEEec-CCCCCCcEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI-GGEAT---AEVRLQVSTPYRVDVN--PPLLSVHLDGSANFQCEIT-PYDSGPYLIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~---~~~~l~v~~~~~~~~~--~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~   89 (150)
                      +.|.|..+..+|.|.|+|.+.+. .|...   ..+.|.|..+|.+...  +....+.+|+.+.|.|.+. .|   .+.+.
T Consensus       142 ~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P---~p~i~  218 (265)
T 2oz4_A          142 AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNP---LPELK  218 (265)
T ss_dssp             ECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEES---CCEEE
T ss_pred             EEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCC---CCeEE
Confidence            56889999999999999999753 35544   6678888877665432  4466788999999999999 99   99999


Q ss_pred             EeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         90 WFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        90 w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      |++++..+....   .+  ..+..+|.|.|.|.+.|..| ..+..+.|.|.++
T Consensus       219 W~~~~~~~~~~g---~~--~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~p  265 (265)
T 2oz4_A          219 CLKDGTFPLPIG---ES--VTVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP  265 (265)
T ss_dssp             EEETTTEECCTT---SC--EECCGGGCEEEEEEEEETTE-EEEEEEEEEEECC
T ss_pred             EEECCcccCCCC---cE--EEeehhhCeEEEEEEECCCC-cEEEEEEEEEecC
Confidence            999887322221   12  23777999999999999998 6788888888653

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.70  E-value=3.4e-16  Score=105.02  Aligned_cols=125  Identities=12%  Similarity=0.152  Sum_probs=93.7

Q ss_pred             eEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCC--CCcEE
Q psy11131         12 TRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDS--GPYLI   88 (150)
Q Consensus        12 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~--~~~~~   88 (150)
                      +......|.|.+++.+|+|.|+|.+.+..+.....+.|.|..+|...   ....+.+|+.+.|.|.+. .+..  -.+.+
T Consensus       137 ~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i  213 (363)
T 1wio_A          137 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGEL  213 (363)
T ss_dssp             EEEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEE
T ss_pred             ccccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeE
Confidence            33344789999999999999999999876666666777777554322   345678899999999775 2111  05899


Q ss_pred             EEeecCcccCCC--------cc------------------eeeEEEccCCCCCCceEEEEEEeC--CCCceeeeEEEEEc
Q psy11131         89 AWFKDGRQIPGR--------TS------------------STSLVINPVGREDRGIYQCIARRS--DGDVAQGSAELQLG  140 (150)
Q Consensus        89 ~w~~~~~~~~~~--------~~------------------~~~l~~~~~~~~~~g~y~C~~~~~--~g~~~~~~~~l~v~  140 (150)
                      .|++++..+...        ..                  ...|.|.++..+|.|.|.|.+.|.  .| ..+..+.|.|.
T Consensus       214 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g-~~~~~~~l~V~  292 (363)
T 1wio_A          214 WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG-KLHQEVNLVVM  292 (363)
T ss_dssp             EEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTC-CEEEEEEEEEE
T ss_pred             EEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcC-eEEEEEeEEEE
Confidence            999988765541        11                  238999999999999999999999  88 57777777664

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.70  E-value=1e-16  Score=105.57  Aligned_cols=125  Identities=17%  Similarity=0.239  Sum_probs=91.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEec-cCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS-NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~   93 (150)
                      .+|.|.+++.+|+|.|+|.+. +..+..+..+.|.+...|.....+....+..++.+.+.|.+.  .|   .+.+.|+++
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P---~~~i~W~~~  155 (313)
T 4fqp_A           79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRP---PAQITWHSD  155 (313)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBS---CCEEEEEET
T ss_pred             eEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccC---CcEEEeecC
Confidence            569999999999999999875 445667777888888777665544444556777888899876  78   899999998


Q ss_pred             CcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeCCCC-ceeeeEEEEEcCcCc
Q psy11131         94 GRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRSDGD-VAQGSAELQLGGTRN  144 (150)
Q Consensus        94 ~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~v~~~p~  144 (150)
                      +..+.....           .+.|.+.....+|.|.|.|.+.|..+. ....++.|.|..+|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~  218 (313)
T 4fqp_A          156 LGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPE  218 (313)
T ss_dssp             TCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEE
T ss_pred             CccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCc
Confidence            765432111           346888888889999999999997652 234455555555543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.70  E-value=7.5e-16  Score=107.79  Aligned_cols=123  Identities=24%  Similarity=0.380  Sum_probs=90.3

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc---eeEEEEEEEe----cCceEEeCCCcEEEecCCcEEEEEEe
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE---ATAEVRLQVS----TPYRVDVNPPLLSVHLDGSANFQCEI   78 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~   78 (150)
                      .|+....    .+|.|.+++.+|+|.|+|.+.+..|.   ....+.|.|.    .+|.+...+......+|+.+.|.|.+
T Consensus        59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~  138 (523)
T 2rcj_C           59 TRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLI  138 (523)
T ss_pred             CcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEe
Confidence            5665432    47999999999999999999987543   2344677774    45555555555556789999999999


Q ss_pred             c-CCCCCC--cEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEE
Q psy11131         79 T-PYDSGP--YLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAE  136 (150)
Q Consensus        79 ~-~p~~~~--~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~  136 (150)
                      . .|   +  +.+.|++++..+.....              .+.|.|..+..+|.|.|.|.+.|..+ ....++.
T Consensus       139 ~g~~---p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~-~~~~~~~  209 (523)
T 2rcj_C          139 SDFY---PGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS-TVEKTVA  209 (523)
T ss_pred             cccc---CCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCc-cccccee
Confidence            8 55   4  39999999876643211              23689999999999999999999877 3333333

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.70  E-value=2.7e-16  Score=98.38  Aligned_cols=122  Identities=20%  Similarity=0.253  Sum_probs=84.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~   93 (150)
                      .+|.|.+++.+|+|.|.|.+.+..+. ......+.+..++.....+.......+..+.+.|.+.  .|   ++.+.|+++
T Consensus        83 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P---~~~~~w~~~  159 (225)
T 4fmk_A           83 ATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRP---PARITWISS  159 (225)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBS---CCEEEEECS
T ss_pred             EEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCC---CCEEEEEEC
Confidence            57999999999999999999876554 3344455555555444333333445566677777665  77   889999887


Q ss_pred             CcccCCCc--------c---eeeEEEccCCCCCCceEEEEEEeCCCC-ceeeeEEEEEcC
Q psy11131         94 GRQIPGRT--------S---STSLVINPVGREDRGIYQCIARRSDGD-VAQGSAELQLGG  141 (150)
Q Consensus        94 ~~~~~~~~--------~---~~~l~~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~v~~  141 (150)
                      +..+....        .   .+.|.|..+..+|.|.|+|.|.|..+. ....++.|.|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          160 LGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             SCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             CccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            65432111        0   346999999999999999999998773 234455555554

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.70  E-value=1.1e-15  Score=96.90  Aligned_cols=116  Identities=20%  Similarity=0.255  Sum_probs=83.9

Q ss_pred             CCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcc-----eeEEEEEEEecCc------------eEEeCCCcEEE
Q psy11131          9 GPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGE-----ATAEVRLQVSTPY------------RVDVNPPLLSV   66 (150)
Q Consensus         9 ~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~------------~~~~~~~~~~~   66 (150)
                      ..|+.+..     .+|.|.+++.+|+|.|.|.+.+..+.     ......|.|...+            .+...+....+
T Consensus        60 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v  139 (238)
T 2p1y_A           60 PDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTV  139 (238)
T ss_dssp             CTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEE
T ss_pred             cceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEE
Confidence            45666642     57999999999999999999986442     1134567776532            34445666778


Q ss_pred             ecCCcEEEEEEec-CCCCCCcEEEEeecCc--ccC------------CCcc----------eeeEEEccCCCCCCceEEE
Q psy11131         67 HLDGSANFQCEIT-PYDSGPYLIAWFKDGR--QIP------------GRTS----------STSLVINPVGREDRGIYQC  121 (150)
Q Consensus        67 ~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~~~------------~~~~----------~~~l~~~~~~~~~~g~y~C  121 (150)
                      .+|+.+.|.|.+. .|   .+.+.|++++.  ...            ...+          ...|.|.++..+|+|.|.|
T Consensus       140 ~~G~~v~L~C~~~~~p---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  216 (238)
T 2p1y_A          140 WEGETAILNCSYENSA---FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC  216 (238)
T ss_dssp             ETTSCEEEEEECCCTT---CCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEE
T ss_pred             eCCCeEEEEEEEecCC---CCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEE
Confidence            9999999999998 88   88999998632  100            0000          2579999999999999999


Q ss_pred             EEEeCC
Q psy11131        122 IARRSD  127 (150)
Q Consensus       122 ~~~~~~  127 (150)
                      .+.|..
T Consensus       217 ~a~n~~  222 (238)
T 2p1y_A          217 AAIDTN  222 (238)
T ss_dssp             EEEETT
T ss_pred             EEeeCC
Confidence            999873

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.69  E-value=1.6e-16  Score=107.15  Aligned_cols=133  Identities=22%  Similarity=0.276  Sum_probs=96.0

Q ss_pred             CCceEEeC-CeEEEcCCCCCCC-eEEEEEeccCCccee-E---EEEEEEecC-----ceE-EeCCCcEEEecCCcEEEEE
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDS-GTYRCSSSNIGGEAT-A---EVRLQVSTP-----YRV-DVNPPLLSVHLDGSANFQC   76 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~-~---~~~l~v~~~-----~~~-~~~~~~~~~~~g~~~~l~C   76 (150)
                      +.++.+.. ++|.|.+++.+|. |.|+|.+.+..+... .   ...|.|..+     |.. ........+.+|+.+.|.|
T Consensus       155 ~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C  234 (388)
T 2v5m_A          155 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC  234 (388)
T ss_dssp             TTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECC
T ss_pred             CCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEE
Confidence            34555544 7899999999999 999999988643322 1   134566543     111 1122345678999999999


Q ss_pred             Eec-CCCCCCcEEEEeecCcccCC------Ccc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         77 EIT-PYDSGPYLIAWFKDGRQIPG------RTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        77 ~~~-~p~~~~~~~~w~~~~~~~~~------~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .+. .|   .+.+.|++++..+..      ...    ...|.|.++..+|.|.|.|.+.|..| ..+..+.|.|..+|..
T Consensus       235 ~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~  310 (388)
T 2v5m_A          235 PAQGFP---APSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSA  310 (388)
T ss_dssp             CCEEES---CCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSC-EEEEEEEEEEEEEEEE
T ss_pred             ECCCCC---CCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCC-ceeEEEEEEEeCCCcc
Confidence            998 88   899999997543221      111    45899999999999999999999999 5777888888776543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.69  E-value=2.6e-16  Score=104.38  Aligned_cols=128  Identities=20%  Similarity=0.265  Sum_probs=90.0

Q ss_pred             EeCCeEEEcCCCCCCCe-EEEEEeccCCcceeEEEEEEEe-cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEE
Q psy11131         14 VLGPILAIEGVTAEDSG-TYRCSSSNIGGEATAEVRLQVS-TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAW   90 (150)
Q Consensus        14 ~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~l~v~-~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w   90 (150)
                      ...++|.|.+++.+|+| .|+|.+.+..|.......+.|. .++.....+....+.+|+.+.|.|.+. .|.  .+.+.|
T Consensus        86 ~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~--~~~i~W  163 (329)
T 3oq3_B           86 VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKH--YNNITW  163 (329)
T ss_dssp             EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCC--CCEEEE
T ss_pred             eecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCC--CceEEE
Confidence            34589999999999999 9999999987664444333443 333222111112245699999999887 542  589999


Q ss_pred             eecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeC--CCC---ceeeeEEEEEcCcC
Q psy11131         91 FKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRS--DGD---VAQGSAELQLGGTR  143 (150)
Q Consensus        91 ~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~--~g~---~~~~~~~l~v~~~p  143 (150)
                      ++++..+.....     ...|.|.++..+|.|.|.|.+.|.  .|.   ..+..+.|.|..+|
T Consensus       164 ~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          164 YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             EETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             EECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence            999887743222     468999999999999999999987  542   12334777777665

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.69  E-value=5.9e-16  Score=108.68  Aligned_cols=115  Identities=17%  Similarity=0.108  Sum_probs=79.0

Q ss_pred             CCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC
Q psy11131         16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG   94 (150)
Q Consensus        16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~   94 (150)
                      ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|..+|.+...+.      +  ..|.|.+. .|   .|.+.|++++
T Consensus       377 ~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~------~--~~l~C~a~g~P---~p~i~W~~~~  445 (527)
T 3qs9_E          377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEAS------A--SQASCFSDGYP---LPSWTWKKCS  445 (527)
T ss_dssp             SSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCC------C--E---EEEECSS---CCEEEEECCC
T ss_pred             CcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCC------C--CEEEEEEEEEc---CCeEEEEECC
Confidence            36899999999999999999999999988899999998887765542      2  35699999 99   8999998765


Q ss_pred             cccCC-------------------CcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         95 RQIPG-------------------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        95 ~~~~~-------------------~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      .....                   ........+.....+|.|.|.|.|.|..| .....+.|.|.++
T Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G-~~~~~~~L~V~~p  511 (527)
T 3qs9_E          446 DKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLG-TSCETILLNSPGP  511 (527)
T ss_dssp             -----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSC-EEEEEEEC-----
T ss_pred             CCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCC-CceeEEEEecCCC
Confidence            43210                   00022333444445799999999999999 6778888876654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.69  E-value=1.7e-16  Score=98.97  Aligned_cols=116  Identities=23%  Similarity=0.344  Sum_probs=83.6

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCccee-EEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec--
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT--   79 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~--   79 (150)
                      .|+.+..    .+|.|.+++.+|+|.|.|.+.+..+... ....|.|..   +|.+...+.......|+.+.|.|.+.  
T Consensus        59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~  138 (210)
T 1lk3_L           59 ARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNF  138 (210)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE
T ss_pred             ccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeE
Confidence            5665542    3899999999999999999998755432 234677764   34444333222234788999999997  


Q ss_pred             CCCCCC-cEEEEeecCcccCCC-c--------c------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 PYDSGP-YLIAWFKDGRQIPGR-T--------S------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 ~p~~~~-~~~~w~~~~~~~~~~-~--------~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|   . ..+.|++++..+... .        .      .+.|.|..+..+|.|.|.|.+.|...
T Consensus       139 ~p---~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          139 YP---RDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS  200 (210)
T ss_dssp             BS---SCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             eC---CceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence            44   4 389999998876543 0        0      23688999989999999999998765

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.69  E-value=2.9e-16  Score=99.22  Aligned_cols=131  Identities=12%  Similarity=0.117  Sum_probs=83.4

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEec----CceEEeCCCcEEEecCCcEEEEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQCE   77 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~   77 (150)
                      +.|+.+..      .+|.|.+++.+|+|.|.|.+.+..+. ....+.|.|..    +|.+........+.+|+.+.|.|.
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~  144 (227)
T 1mju_H           65 KNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCL  144 (227)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEE
T ss_pred             CCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEE
Confidence            36776642      58999999999999999999875321 12345778874    233332222223567999999999


Q ss_pred             ec--CCCCCCc-EEEEeecCcccCCC--------cc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         78 IT--PYDSGPY-LIAWFKDGRQIPGR--------TS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        78 ~~--~p~~~~~-~~~w~~~~~~~~~~--------~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      +.  .|   .+ .+.|++++..+...        ..   .+.|.|.....+| |.|+|.+.|..+ .......+.+..+|
T Consensus       145 ~~g~~P---~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~-~~~~~~~~~~~~~p  219 (227)
T 1mju_H          145 VKGYFP---EPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS-STKVDKKIEPRGPT  219 (227)
T ss_dssp             EEEEBS---SCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGG-TEEEEEECCCCCC-
T ss_pred             eecEeC---CCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCC-CcceEEEeCCCCCC
Confidence            98  47   66 99999987654210        11   3467888877777 999999999765 34455555555554


Q ss_pred             c
Q psy11131        144 N  144 (150)
Q Consensus       144 ~  144 (150)
                      +
T Consensus       220 ~  220 (227)
T 1mju_H          220 I  220 (227)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.69  E-value=7.8e-16  Score=104.02  Aligned_cols=132  Identities=18%  Similarity=0.209  Sum_probs=98.0

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCe---EEEEEeccCCcceeEEEEEEEe---c----------CceEEeCCCcEEEecCCc
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSG---TYRCSSSNIGGEATAEVRLQVS---T----------PYRVDVNPPLLSVHLDGS   71 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~l~v~---~----------~~~~~~~~~~~~~~~g~~   71 (150)
                      +.++.... ++|.|.+++..|+|   .|+|.+.+..+...........   .          .|.+  .+....+.+|+.
T Consensus       152 ~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~  229 (395)
T 1bih_A          152 DRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDV  229 (395)
T ss_dssp             CTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSC
T ss_pred             cccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCc
Confidence            45555544 78999999999999   9999999987664333222111   1          1111  245567889999


Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      +.|.|.+. .|   .+.+.|++++..+.....          ...|.|.++..+|.|.|.|.+.|..|......+.|.|.
T Consensus       230 v~l~C~~~g~p---~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  306 (395)
T 1bih_A          230 TMIYCMYGSNP---MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV  306 (395)
T ss_dssp             EEEEEEEECSS---CCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             EEEEEEeccCC---CCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEE
Confidence            99999999 88   889999999877653321          23799999999999999999999988544457888887


Q ss_pred             CcCcc
Q psy11131        141 GTRNI  145 (150)
Q Consensus       141 ~~p~~  145 (150)
                      .+|..
T Consensus       307 ~~P~~  311 (395)
T 1bih_A          307 SAPKY  311 (395)
T ss_dssp             EEEEE
T ss_pred             cCCcc
Confidence            76543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.69  E-value=3.8e-16  Score=107.03  Aligned_cols=123  Identities=11%  Similarity=0.072  Sum_probs=79.8

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ   96 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~   96 (150)
                      +|.|.+++.+|+|.|+|.+.|..|.....+.|.|..+|.+... .......|+.+.|.|.+. .|   .|.+.|++++..
T Consensus       104 sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~-~p~~~~~~~~~~L~C~a~G~P---~P~i~W~k~~~~  179 (423)
T 3qs7_E          104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLR-RPYFRKMENQDALVCISESVP---EPIVEWVLCDSQ  179 (423)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEE-EEEEEECSSSSCEEEEEEESS---CCEEEEEEC---
T ss_pred             EEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCcccccc-CCcEeccCCceEEEEEEeeec---CCeEEEEECCCC
Confidence            6999999999999999999999888888888888865543211 112345677888999999 99   999999998764


Q ss_pred             cCCCcc---eeeEEEcc-CCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         97 IPGRTS---STSLVINP-VGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        97 ~~~~~~---~~~l~~~~-~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      +.....   ........ +...|.|.|.|.|.|..|......+.|.|..+|.
T Consensus       180 ~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~  231 (423)
T 3qs7_E          180 GESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ  231 (423)
T ss_dssp             ----------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCC
T ss_pred             CccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCc
Confidence            422111   11111111 2567899999999999985444457777765543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.68  E-value=2.8e-16  Score=98.38  Aligned_cols=117  Identities=19%  Similarity=0.271  Sum_probs=82.4

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCc--ceeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT   79 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~   79 (150)
                      ..|+.+..    .+|.|.+++.+|+|.|.|.+.+..+  .......|.|..   +|.+...+.......|+.+.|.|.+.
T Consensus        60 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  139 (216)
T 2xzc_L           60 PDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLN  139 (216)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred             CCceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEE
Confidence            34666542    4799999999999999999998765  222345677753   34444322211123588999999998


Q ss_pred             --CCCCCCc-EEEEeecCcccCCC--c-------c------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 --PYDSGPY-LIAWFKDGRQIPGR--T-------S------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 --~p~~~~~-~~~w~~~~~~~~~~--~-------~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                        .|   .+ .+.|++++..+...  .       .      .+.|.|.....+|.|.|.|.+.|...
T Consensus       140 g~~P---~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (216)
T 2xzc_L          140 NFYP---REAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  203 (216)
T ss_dssp             EEBS---SCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             eEcC---CceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCC
Confidence              45   44 89999998776543  0       0      23688888888999999999999765

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.68  E-value=1.1e-17  Score=110.03  Aligned_cols=129  Identities=16%  Similarity=0.130  Sum_probs=87.0

Q ss_pred             CCCCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEe---------CCCcEEEecCCcEEEE
Q psy11131          7 LPGPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV---------NPPLLSVHLDGSANFQ   75 (150)
Q Consensus         7 ~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~---------~~~~~~~~~g~~~~l~   75 (150)
                      ..+.++.+..  ..|.|.+++.+|+|.|+|.+.+..+.....+.|.|...+.+..         ..............+.
T Consensus        49 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~  128 (317)
T 2y25_A           49 SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLY  128 (317)
T ss_dssp             CCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEE
T ss_pred             CCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEE
Confidence            3344544433  5899999999999999999999888776666666554322111         1111222334445666


Q ss_pred             EEec--CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         76 CEIT--PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        76 C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |.+.  .|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|..| .....+.+.+
T Consensus       129 c~~~~~~p---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v  198 (317)
T 2y25_A          129 SFVTYYVE---DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKTVDLSG  198 (317)
T ss_dssp             EEBSSCCS---SCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC-EEEEEEEECH
T ss_pred             EEeccCCC---CcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCc-eEEEEEEEee
Confidence            6665  46   899999999887765433        24599999999999999999999888 4556666554

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.68  E-value=2.3e-16  Score=99.16  Aligned_cols=115  Identities=18%  Similarity=0.190  Sum_probs=81.9

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc-----ceeEEEEEEEec----CceEEeCCCcEEEecCCcEEE
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG-----EATAEVRLQVST----PYRVDVNPPLLSVHLDGSANF   74 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l   74 (150)
                      .|+.+..      .+|.|.+++.+|+|.|.|.+.+..+     .....+.|.|..    +|.+...+....+.+|+.+.|
T Consensus        68 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  147 (222)
T 1q9r_B           68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTL  147 (222)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEE
T ss_pred             CceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEE
Confidence            5666652      4899999999999999999988643     222345677764    233332222222457999999


Q ss_pred             EEEec-C-CCCCCc-EEEEeecCcccCCCc--------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         75 QCEIT-P-YDSGPY-LIAWFKDGRQIPGRT--------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        75 ~C~~~-~-p~~~~~-~~~w~~~~~~~~~~~--------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|.+. . |   .| .+.|++++..+....        .   .+.|.|......| |.|.|.+.|..|
T Consensus       148 ~C~~~g~~P---~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~  211 (222)
T 1q9r_B          148 GCLVKGYFP---EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS  211 (222)
T ss_dssp             EEEEEEEBS---SCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             EEEEccEEC---CCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCC
Confidence            99998 4 8   77 999999886543210        1   3467888888888 999999999887

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.68  E-value=9e-16  Score=85.12  Aligned_cols=84  Identities=20%  Similarity=0.381  Sum_probs=69.8

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....          ...|.|.++..+|.|.|.|.
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P---~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   81 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEP---TPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLS   81 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEES---CCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEec---CCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEE
Confidence            34555566778899999999999999 99   999999999987754331          35799999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcC
Q psy11131        123 ARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~  141 (150)
                      +.|..| ..+..+.|.|+.
T Consensus        82 a~N~~G-~~~~~~~l~V~~   99 (100)
T 3knb_A           82 LGNEFG-SDSATVNIHIRS   99 (100)
T ss_dssp             EEETTE-EEEEEEEEEEEC
T ss_pred             EEECCC-EEEEEEEEEEEE
Confidence            999999 577888888754

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.68  E-value=3.1e-16  Score=98.38  Aligned_cols=116  Identities=16%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc----ceeEEEEEEEecC----ceEEeCCCcEEEecCCcEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG----EATAEVRLQVSTP----YRVDVNPPLLSVHLDGSANF   74 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~----~~~~~~~~~~~~~~g~~~~l   74 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..+    .....+.|.|...    |.+...+....+.+|+.+.|
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  144 (219)
T 1c1e_H           65 KGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTL  144 (219)
T ss_dssp             CSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEE
T ss_pred             CCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEE
Confidence            35666642      5899999999999999999998652    1223467777652    33332222223457999999


Q ss_pred             EEEec--CCCCCCc-EEEEeecCcccCCC--------cc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         75 QCEIT--PYDSGPY-LIAWFKDGRQIPGR--------TS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        75 ~C~~~--~p~~~~~-~~~w~~~~~~~~~~--------~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|.+.  .|   .| .+.|++++..+...        ..   .+.|.|.. ...|.|.|+|.|.|..+
T Consensus       145 ~C~~~g~~P---~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~  208 (219)
T 1c1e_H          145 GCLVKGYFP---EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPS-SPRPSETVTCNVAHPAS  208 (219)
T ss_dssp             EEEEEEEBS---SCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEES-SSTTTSCCEEEEEEGGG
T ss_pred             EEEcccccC---CCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEec-ccCCCCEEEEEEEeCCC
Confidence            99998  67   77 99999988653210        10   24577744 34466999999999876

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.67  E-value=3.6e-16  Score=97.58  Aligned_cols=117  Identities=22%  Similarity=0.309  Sum_probs=81.1

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEe----cCceEEeCCCcEEEecCCcEEEEEEec-
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVS----TPYRVDVNPPLLSVHLDGSANFQCEIT-   79 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~-   79 (150)
                      .|+.+..    .+|.|.+++.+|+|.|.|.+.+..+.. .....|.|.    .+|.+...+.......|+.+.|.|.+. 
T Consensus        62 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g  141 (212)
T 1q0x_L           62 ARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITD  141 (212)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEE
T ss_pred             ccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEE
Confidence            5665543    389999999999999999999875432 233566674    334443322222234688999999998 


Q ss_pred             CCCCCCc-EEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 PYDSGPY-LIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 ~p~~~~~-~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+.  .+ .+.|++++..+.....              ...|.|.....+|.|.|.|.|.|...
T Consensus       142 ~~p--~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          142 FYP--GVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             EBS--SCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             EeC--CCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence            430  33 8999999876643210              23677888888899999999998765

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.67  E-value=1.2e-16  Score=99.47  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=80.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe---------------------------c----CceEEeCCCcEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---------------------------T----PYRVDVNPPLLS   65 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~---------------------------~----~~~~~~~~~~~~   65 (150)
                      ++|.|.+++.+|+|.|+|.+.+.. .  ..+.|.|.                           .    ++.+...+. ..
T Consensus        49 ~~L~i~~v~~~DsG~Y~C~~~~~~-s--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v  124 (204)
T 1sy6_A           49 KKWNLGSNAKDPRGMYQCKGSQNK-S--KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KV  124 (204)
T ss_dssp             CCEEEEEGGGCCEEEEEEESSSSC-C--CCEEEEEEC------------------------------------CCCC-EE
T ss_pred             CeEEeCCCCcCCCEEEEEEecCCC-C--eeEEEEEEEeccccccccccccccccccccccccccccccccceecCCc-ee
Confidence            679999999999999999976532 2  22334443                           0    111111222 22


Q ss_pred             EecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCc-------ceeeEEEccC-CCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         66 VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-------SSTSLVINPV-GREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        66 ~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~-------~~~~l~~~~~-~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      ..+|+.+.|.|.. .|   .+.+.|++++..+....       ....|.|.++ ...|.|.|.|.+.|..|...+..+.|
T Consensus       125 ~~~G~~v~L~C~g-~p---~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l  200 (204)
T 1sy6_A          125 SISGTTVILTCPQ-YP---GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYL  200 (204)
T ss_dssp             EEETTEEEEECSC-CC---SSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEE
T ss_pred             eecCCcEEEEcCC-CC---CCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEE
Confidence            2389999999984 56   67799999988765431       1468999999 99999999999999998545666666


Q ss_pred             EEc
Q psy11131        138 QLG  140 (150)
Q Consensus       138 ~v~  140 (150)
                      .+.
T Consensus       201 ~~~  203 (204)
T 1sy6_A          201 RAR  203 (204)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            653

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.67  E-value=1.8e-16  Score=106.36  Aligned_cols=114  Identities=17%  Similarity=0.184  Sum_probs=88.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR   95 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~   95 (150)
                      .+|.|.+++.+|+|.|+|.+.+..    ..+.|.|..   +...+. ..+.+|+.+.|.|.+. .|   .+.+.|++++.
T Consensus        67 ~~L~I~~v~~~D~G~Y~C~~~n~~----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~  135 (363)
T 1wio_A           67 FPLIIKNLKIEDSDTYICEVEDQK----EEVQLLVFG---LTANSD-THLLQGQSLTLTLESPPGS---SPSVQCRSPRG  135 (363)
T ss_dssp             CCEEECSCCGGGCEEEEEEETTEE----EEEEEEEEE---EEESSC-SSEESBSCEEEEEECCTTC---CCCEEEECSSS
T ss_pred             EEEEECCCCHHHCEEEEEEEEECC----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEcCCCC---CCeEEEEcCCC
Confidence            579999999999999999998863    356666664   222232 3568999999999998 88   89999999876


Q ss_pred             ccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131         96 QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      .+..  ....|.|.++..+|.|.|.|.+.+..+ .....+.+.|..+|+
T Consensus       136 ~~~~--~~~~L~i~~v~~~d~G~Y~C~a~~~~~-~~~~~~~l~v~~~p~  181 (363)
T 1wio_A          136 KNIQ--GGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQK  181 (363)
T ss_dssp             CEEE--ESSEEEECSBCGGGCEECEEEEEETTE-EEEECCEECEECCSC
T ss_pred             cccc--cceEEEEeeCChhcCCEEEEEEecCCC-eEEEEEEEEEecCCC
Confidence            5422  156899999999999999999998755 455666776665553

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.67  E-value=2e-15  Score=97.94  Aligned_cols=117  Identities=21%  Similarity=0.259  Sum_probs=80.5

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCc--------------eEEeCCCcEEEecC
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPY--------------RVDVNPPLLSVHLD   69 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~--------------~~~~~~~~~~~~~g   69 (150)
                      +.|+.+..    .+|.|.+++.+|+|.|.|.+.+..+. ......|.|...+              .....+....+.+|
T Consensus        70 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G  149 (276)
T 3auv_A           70 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPG  149 (276)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTT
T ss_pred             CCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCC
Confidence            35666543    37999999999999999999986543 2333567776532              11223445678899


Q ss_pred             CcEEEEEEec-CCCCCCcEEEEeecC--ccc-----------------CCCcc----------eeeEEEccCCCCCCceE
Q psy11131         70 GSANFQCEIT-PYDSGPYLIAWFKDG--RQI-----------------PGRTS----------STSLVINPVGREDRGIY  119 (150)
Q Consensus        70 ~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~-----------------~~~~~----------~~~l~~~~~~~~~~g~y  119 (150)
                      +.+.|.|.+. .+.. .+.+.|++++  ...                 ....+          ...|.|.++..+|+|.|
T Consensus       150 ~~v~L~C~~~g~~~~-~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  228 (276)
T 3auv_A          150 GSLRLSCAASGFTIS-DYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVY  228 (276)
T ss_dssp             CCEEEEEEEESSCGG-GSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CeEEEEEEecCccCC-CCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEE
Confidence            9999999998 5400 3899999863  111                 00111          23799999999999999


Q ss_pred             EEEEEeC
Q psy11131        120 QCIARRS  126 (150)
Q Consensus       120 ~C~~~~~  126 (150)
                      .|.+.|.
T Consensus       229 ~C~a~n~  235 (276)
T 3auv_A          229 YCARFVF  235 (276)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcC
Confidence            9999997

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.67  E-value=3.3e-15  Score=95.97  Aligned_cols=106  Identities=20%  Similarity=0.354  Sum_probs=79.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc---ceeEEEEEEEecC-----------------ceEEeCCCcEEEecCCcEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG---EATAEVRLQVSTP-----------------YRVDVNPPLLSVHLDGSANFQC   76 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~-----------------~~~~~~~~~~~~~~g~~~~l~C   76 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+   .......|.|...                 +.+...+....+.+|+.+.|.|
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  158 (259)
T 3omz_A           79 LRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNC  158 (259)
T ss_dssp             CEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECC
T ss_pred             EEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEE
Confidence            5799999999999999999988654   2334467777753                 3455566678899999999999


Q ss_pred             Eec-C-CCCCCcEEEEeecCc--ccC----------------------CCcceeeEEEccCCCCCCceEEEEEEe
Q psy11131         77 EIT-P-YDSGPYLIAWFKDGR--QIP----------------------GRTSSTSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        77 ~~~-~-p~~~~~~~~w~~~~~--~~~----------------------~~~~~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      ... . +   .+.+.|++...  .+.                      .......|.|.++..+|+|.|.|.+..
T Consensus       159 ~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          159 LYETSWW---SYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             EEECCCS---SCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             ECCCccC---CceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            887 4 6   89999987432  100                      000034699999999999999999974

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.67  E-value=3.4e-16  Score=103.99  Aligned_cols=125  Identities=18%  Similarity=0.306  Sum_probs=92.3

Q ss_pred             CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCc----ceeEEEEEEEec-----CceEEeCCCcEEEecCCcEEEEEEe
Q psy11131         10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGG----EATAEVRLQVST-----PYRVDVNPPLLSVHLDGSANFQCEI   78 (150)
Q Consensus        10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~-----~~~~~~~~~~~~~~~g~~~~l~C~~   78 (150)
                      .++....  +.|.|.+++.+|+|.|+|.+.|..+    ..+..+.|.|..     +|.+...+....+.+|+.+.|.|.+
T Consensus       171 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~  250 (339)
T 3o4o_C          171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKV  250 (339)
T ss_dssp             SSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCE
T ss_pred             ceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEE
Confidence            4555554  4799999999999999999998765    356677888874     3344444455567889999999999


Q ss_pred             ---c-CCCCCCcEEEEeecCcccCCCc---------c-----------eeeEEEccCCCCCC-ceEEEEEEeCCCCceee
Q psy11131         79 ---T-PYDSGPYLIAWFKDGRQIPGRT---------S-----------STSLVINPVGREDR-GIYQCIARRSDGDVAQG  133 (150)
Q Consensus        79 ---~-~p~~~~~~~~w~~~~~~~~~~~---------~-----------~~~l~~~~~~~~~~-g~y~C~~~~~~g~~~~~  133 (150)
                         . .|.  .+.+.|.+++..+....         .           ...|.|.++..+|. |.|.|.+.|..| ..+.
T Consensus       251 ~~~~g~P~--~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G-~~~~  327 (339)
T 3o4o_C          251 FLGTGTPL--TTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS-FQTL  327 (339)
T ss_dssp             EESSSCCS--SCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTE-EECC
T ss_pred             ECCCCCCC--CceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccC-ceEE
Confidence               6 442  67899998886543210         0           12799999999997 999999999998 4444


Q ss_pred             eEEE
Q psy11131        134 SAEL  137 (150)
Q Consensus       134 ~~~l  137 (150)
                      .+.+
T Consensus       328 ~~~~  331 (339)
T 3o4o_C          328 RTTV  331 (339)
T ss_dssp             BCCC
T ss_pred             EEEh
Confidence            4433

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.66  E-value=4e-16  Score=97.35  Aligned_cols=119  Identities=21%  Similarity=0.329  Sum_probs=83.0

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEE---ecCceEEeCCCcEEEecCCcEEEEEEec-
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQV---STPYRVDVNPPLLSVHLDGSANFQCEIT-   79 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v---~~~~~~~~~~~~~~~~~g~~~~l~C~~~-   79 (150)
                      +.|+.+..    .+|.|.+++.+|+|.|.|.+.+..+. ......|.|   ..+|.+...+.......|..+.|.|.+. 
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g  138 (213)
T 3r06_A           59 PSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNN  138 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEE
T ss_pred             CCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEee
Confidence            45666543    48999999999999999999886442 334456777   3445554444333344677899999998 


Q ss_pred             CCCCCCcEEEEeecCcccCCCc-c--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 PYDSGPYLIAWFKDGRQIPGRT-S--------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 ~p~~~~~~~~w~~~~~~~~~~~-~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+.. .+.+.|++++..+.... .              ...|.+......|.|.|+|.+.|...
T Consensus       139 ~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          139 FYPK-DINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             EBSS-CEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             ecCC-ceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence            4400 35899999987765421 0              23566777777789999999999764

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.66  E-value=4.3e-15  Score=96.70  Aligned_cols=129  Identities=21%  Similarity=0.322  Sum_probs=88.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc---c--eeEEEEEEEecCc---------------eEEeCCCc
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG---E--ATAEVRLQVSTPY---------------RVDVNPPL   63 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~---~--~~~~~~l~v~~~~---------------~~~~~~~~   63 (150)
                      .|+.+..      .+|.|.+++.+|+|.|.|.+.+..|   .  ....+.|.|...+               .+...+..
T Consensus        92 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~  171 (282)
T 1qok_A           92 GKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAI  171 (282)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSE
T ss_pred             CcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCE
Confidence            5666642      4799999999999999999998754   1  1234577777542               23344556


Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEee--cCcccC------------CCcc--------eeeEEEccCCCCCCceEE
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFK--DGRQIP------------GRTS--------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~--~~~~~~------------~~~~--------~~~l~~~~~~~~~~g~y~  120 (150)
                      ..+.+|+.+.|.|.+. .+    +.+.|++  ++..+.            ...+        ...|.|.++..+|.|.|.
T Consensus       172 ~~v~~G~~v~L~C~~~~~~----~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~  247 (282)
T 1qok_A          172 MSASPGEKVTITCSASSSV----SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYY  247 (282)
T ss_dssp             EEECTTCCEEEEEEESSCC----SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             EEEcCCCcEEEEEEecCCC----ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEE
Confidence            6788999999999998 54    5899998  444321            0111        347999999999999999


Q ss_pred             EEEEeCCCCceeeeEEEEEcCc
Q psy11131        121 CIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       121 C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      |.+.+........-..|.|...
T Consensus       248 C~a~~~~~~~fg~gt~l~V~~~  269 (282)
T 1qok_A          248 CQQRSSYPLTFGAGTKLELKRA  269 (282)
T ss_dssp             EEECSSSSCEECCCEEEEEC--
T ss_pred             EEEeeCCCceEeCCEEEEEecc
Confidence            9998753322334455666543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=9.7e-17  Score=101.51  Aligned_cols=117  Identities=22%  Similarity=0.328  Sum_probs=80.2

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc---eeEEEEEEEec----CceEEeCCCcEEEecCCcEEEEEEe
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE---ATAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQCEI   78 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~   78 (150)
                      .|+....    .+|.|.+++.+|+|.|.|.+.+..+.   ....+.|.|..    +|.+...+.......|+.+.|.|.+
T Consensus        80 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~  159 (234)
T 2j6e_L           80 DRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI  159 (234)
T ss_dssp             TTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECC
T ss_pred             ccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEE
Confidence            4665542    48999999999999999999987652   22234566632    2332221221122357899999999


Q ss_pred             c-CCCCCC-cEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         79 T-PYDSGP-YLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        79 ~-~p~~~~-~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      . .+.  . +.+.|++++..+.....              .+.|.|.....+|.|.|+|.|.|..+
T Consensus       160 ~g~~p--~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  223 (234)
T 2j6e_L          160 SDFFP--GAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  223 (234)
T ss_dssp             CBCSS--CCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTB
T ss_pred             EEEcC--CceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCC
Confidence            8 440  3 49999999876643210              24688888888999999999999866

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.66  E-value=1.2e-16  Score=116.17  Aligned_cols=126  Identities=21%  Similarity=0.286  Sum_probs=36.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCC---CcEEEecCCcEEEEEEec-CCCCCCcEEEEee
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP---PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK   92 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~---~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~   92 (150)
                      ..|.|.+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+   ....+.+|+.+.|.|.+. .|   .+.+.|++
T Consensus       290 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~  366 (772)
T 3v2a_R          290 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYP---PPEIKWYK  366 (772)
T ss_dssp             EEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC----------------------------------------
T ss_pred             EEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeC---CCeEEEEE
Confidence            679999999999999999999988878888899998877654332   345678899999999999 88   89999999


Q ss_pred             cCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCCc-eeeeEEEEEcCcCcc
Q psy11131         93 DGRQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGTRNI  145 (150)
Q Consensus        93 ~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~-~~~~~~l~v~~~p~~  145 (150)
                      ++..+.....   ...|.|..+..+|.|.|.|.+.|..|.. .+..+.+.|..+|.+
T Consensus       367 ~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~  423 (772)
T 3v2a_R          367 NGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQI  423 (772)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcc
Confidence            8877654322   3789999999999999999999988732 245666777666544

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-15  Score=106.41  Aligned_cols=111  Identities=14%  Similarity=0.259  Sum_probs=83.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEe-CCCcEE-EecCCcEEEEEEec-CCC-CCCcEEEEee
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV-NPPLLS-VHLDGSANFQCEIT-PYD-SGPYLIAWFK   92 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~-~~~g~~~~l~C~~~-~p~-~~~~~~~w~~   92 (150)
                      +.|.|.++..+| |.|+|.+.|..|.......|.|...|.+.. .+.... +.+|+.+.|.|.+. .|. ...+.+.|++
T Consensus       281 s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k  359 (523)
T 2rcj_C          281 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYV  359 (523)
T ss_pred             EEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEE
Confidence            479999999999 999999999888877777777765555433 333233 67899999999998 441 0025999999


Q ss_pred             cCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         93 DGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        93 ~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ++..+.....             .+.|.|..+..+|.|.|.|.|.|..+
T Consensus       360 ~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  408 (523)
T 2rcj_C          360 DGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKAL  408 (523)
T ss_pred             CCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCC
Confidence            9877643221             24588888888999999999998866

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.65  E-value=1e-15  Score=105.23  Aligned_cols=107  Identities=13%  Similarity=0.185  Sum_probs=86.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEE-eCCCcEEEecCCcEEEEEEec-CCCCCCc---EEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD-VNPPLLSVHLDGSANFQCEIT-PYDSGPY---LIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~~g~~~~l~C~~~-~p~~~~~---~~~w~   91 (150)
                      ..|.|.+++. |.| |+|.+.+..+..+..+.|.|..+|... ..+....+.+|+.+.|.|.+. .|   ++   .+.|+
T Consensus        50 ~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~---~~~~~~v~W~  124 (450)
T 1z7z_I           50 KVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGA---PRANLTVVLL  124 (450)
T ss_dssp             EEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCB---CGGGEEEEEE
T ss_pred             eEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCC---CCcCcEEEEe
Confidence            4689999987 999 999998766667777888888766554 555556788999999999998 77   66   99999


Q ss_pred             ecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         92 KDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        92 ~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +++..+.....     ...|.|..+..+|.|.|.|.+.|..|
T Consensus       125 k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  166 (450)
T 1z7z_I          125 RGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLR  166 (450)
T ss_dssp             ETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             eCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccC
Confidence            99876643221     46899999999999999999999866

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.65  E-value=7.9e-15  Score=83.09  Aligned_cols=88  Identities=19%  Similarity=0.227  Sum_probs=73.6

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.
T Consensus         7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (114)
T 2cqv_A            7 GPQIIQFPEDQKVRAGESVELFGKVTGTQ---PITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   83 (114)
T ss_dssp             CCEESCCCCSEEEETTCCEEEEEEEESSS---SCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCEEEeCCCCeEEeCCCeEEEEEEEEcCC---CCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence            45555566778899999999999999 89   999999999887754432        3579999999999999999999


Q ss_pred             eCCCCceeeeEEEEEcCcCcc
Q psy11131        125 RSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      |..| .....+.|.|.+.|..
T Consensus        84 N~~g-~~~~~~~l~V~~~p~~  103 (114)
T 2cqv_A           84 NKLG-SRQAQVNLTVVDKPDP  103 (114)
T ss_dssp             CSSC-EEECCEEEEEECSCSC
T ss_pred             ECCC-cEEEEEEEEEECCCCC
Confidence            9999 6788899999876544

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.65  E-value=7.7e-16  Score=97.43  Aligned_cols=119  Identities=22%  Similarity=0.316  Sum_probs=82.8

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec-
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT-   79 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~-   79 (150)
                      +.|+....    .+|.|.+++.+|+|.|.|.+.+..+. ......|.|..   +|.+...+.......|+.+.|.|.+. 
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~  161 (237)
T 3sob_L           82 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN  161 (237)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEE
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcc
Confidence            45666542    57999999999999999999876542 23344666643   34443323222233578899999998 


Q ss_pred             CCCCCCcEEEEeecCcccCCCc-----------c----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 PYDSGPYLIAWFKDGRQIPGRT-----------S----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 ~p~~~~~~~~w~~~~~~~~~~~-----------~----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+.. .+.+.|++++..+....           .    ...|.+.....+|.|.|+|.+.|...
T Consensus       162 ~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  224 (237)
T 3sob_L          162 FYPR-EAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  224 (237)
T ss_dssp             EBSS-CCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             cCCC-ceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCC
Confidence            4400 37999999988765421           0    34577888888899999999999865

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.65  E-value=7.4e-15  Score=92.31  Aligned_cols=117  Identities=17%  Similarity=0.197  Sum_probs=83.2

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcc---eeEEEEEEEec----CceEEeCCCcEEEecCCcEEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGE---ATAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQ   75 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~   75 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..+.   ....+.|.|..    +|.+...+ ...+..|+.+.|.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~  143 (220)
T 2fbj_H           65 KDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIG  143 (220)
T ss_dssp             TTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEE
T ss_pred             CCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEE
Confidence            36777653      48999999999999999999876442   22345788874    23333222 2224578999999


Q ss_pred             EEec-C-CCCCC--cEEEEeecCcccCC---------Ccc---eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         76 CEIT-P-YDSGP--YLIAWFKDGRQIPG---------RTS---STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        76 C~~~-~-p~~~~--~~~~w~~~~~~~~~---------~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      |.+. . |   .  +.+.|++++..+..         ...   .+.|.|......|.|.|+|.+.|..+.
T Consensus       144 C~~~g~~P---~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~  210 (220)
T 2fbj_H          144 CLIHDYFP---SGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP  210 (220)
T ss_dssp             EEEEEEBS---CCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             EEEEeEEC---CCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCc
Confidence            9998 4 7   6  79999998765411         111   235888888888999999999998873

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.64  E-value=1.2e-15  Score=85.66  Aligned_cols=96  Identities=23%  Similarity=0.366  Sum_probs=65.3

Q ss_pred             EEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceE
Q psy11131         47 VRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIY  119 (150)
Q Consensus        47 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y  119 (150)
                      +.|.+..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....      ...|.|.++..+|.|.|
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   79 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNP---PPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY   79 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC-------CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcC---CCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEE
Confidence            345566677777777788899999999999999 88   889999999887654332      46799999999999999


Q ss_pred             EEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131        120 QCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       120 ~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      .|.+.|..| .....+.|.|.++|...
T Consensus        80 ~C~a~n~~g-~~~~~~~l~V~~~~~~~  105 (108)
T 3kvq_A           80 TCQACSVLG-CAKVEAFFIIEGAQEKT  105 (108)
T ss_dssp             EEEEC-----CEEEEEEEEEEC-----
T ss_pred             EEEEEeCCC-ceEEEEEEEEeCCCccc
Confidence            999999998 57788899998877543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.64  E-value=8.3e-16  Score=98.42  Aligned_cols=117  Identities=24%  Similarity=0.321  Sum_probs=82.3

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec--
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT--   79 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~--   79 (150)
                      .|+.+..    .+|.|.+++.+|+|.|+|.+.+..+.. .....|.|..   +|.+...+.......|..+.|.|.+.  
T Consensus       102 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~  181 (254)
T 2c1o_A          102 DRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  181 (254)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             ceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecc
Confidence            5665543    379999999999999999999875432 2234566663   34444322222223577999999997  


Q ss_pred             CCCCCCcEEEEeecCcccCCC--c----------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 PYDSGPYLIAWFKDGRQIPGR--T----------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 ~p~~~~~~~~w~~~~~~~~~~--~----------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|.  .+.+.|++++..+...  .          .   ...|.|.++..+|.|.|.|.|.|...
T Consensus       182 ~p~--~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  243 (254)
T 2c1o_A          182 YPK--DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  243 (254)
T ss_dssp             BSS--CCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             cCC--CcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence            340  2579999998776544  0          0   35788999999999999999999765

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.64  E-value=9.7e-17  Score=100.14  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=82.5

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccC-Ccc--eeEEEEEEEe----cCceEEeCCCcEEEecCCcEEEEEE
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNI-GGE--ATAEVRLQVS----TPYRVDVNPPLLSVHLDGSANFQCE   77 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~   77 (150)
                      ..|+.+..    .+|.|.+++.+|+|.|+|.+.+. .+.  ......|.|.    .+|.+...+......+|+.+.|.|.
T Consensus        57 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~  136 (212)
T 1nfd_E           57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCL  136 (212)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEE
T ss_pred             cccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEE
Confidence            35665543    47999999999999999999862 221  1233556664    3444544333333457889999999


Q ss_pred             ec-C-CCCCC-cEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         78 IT-P-YDSGP-YLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        78 ~~-~-p~~~~-~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +. . |   . +.+.|++++..+.....             .+.|.|.++..+|.|.|.|.|.|..+
T Consensus       137 ~~g~~p---~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (212)
T 1nfd_E          137 VNDFYP---GSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE  200 (212)
T ss_dssp             EEEEBS---SCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             EEeeEC---CccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCc
Confidence            98 4 5   4 79999999876643211             23477888888999999999999876

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.64  E-value=6.4e-15  Score=94.87  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=90.8

Q ss_pred             eCCeEEEcCC---CCCCCeE--EEEEeccCCcceeEEEEEEEecC--ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcE
Q psy11131         15 LGPILAIEGV---TAEDSGT--YRCSSSNIGGEATAEVRLQVSTP--YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL   87 (150)
Q Consensus        15 ~~~~l~i~~~---~~~d~G~--Y~C~~~~~~~~~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~   87 (150)
                      .+..+.+..+   +.+|+|.  |+|.+.+..+.....+.|.|...  +.+..  ....+.+|+.+.|.|.+. |   .+.
T Consensus        54 ~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~--~~~~v~~G~~v~l~C~~~-p---~~~  127 (265)
T 2oz4_A           54 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL--TKPEVSEGTEVTVKCEAH-P---RAK  127 (265)
T ss_dssp             CSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEE--SCSEEETTCEEEEEEECC-T---TSE
T ss_pred             CCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeec--CCceecCCCcEEEEEEcc-C---CCE
Confidence            3356666655   7788885  99999998888888889999763  33333  344578899999999997 7   899


Q ss_pred             EEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEe-CCCCce--eeeEEEEEcCcCcc
Q psy11131         88 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARR-SDGDVA--QGSAELQLGGTRNI  145 (150)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~--~~~~~l~v~~~p~~  145 (150)
                      +.|  ++..+........|.+..+..+|.|.|.|.+.| ..|...  +..+.|.|..+|..
T Consensus       128 i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~  186 (265)
T 2oz4_A          128 VTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL  186 (265)
T ss_dssp             EEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEEC
T ss_pred             EEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCcc
Confidence            999  776664433356788888888999999999985 446322  26677888776654

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.64  E-value=6.5e-15  Score=93.46  Aligned_cols=116  Identities=19%  Similarity=0.227  Sum_probs=82.5

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCc------eEEeCCCcEEEecCCcEEEEEE
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPY------RVDVNPPLLSVHLDGSANFQCE   77 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~------~~~~~~~~~~~~~g~~~~l~C~   77 (150)
                      ..|+.+..    .+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|..++      .....+....+.+|+.+.|.|.
T Consensus        63 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  142 (240)
T 1moe_A           63 PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCT  142 (240)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEE
T ss_pred             CccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEE
Confidence            35666543    37999999999999999999987544 3345677887532      2333455667889999999999


Q ss_pred             ec-CCCCCCcEEEEeecC--cccC-----------------CCcc----------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         78 IT-PYDSGPYLIAWFKDG--RQIP-----------------GRTS----------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        78 ~~-~p~~~~~~~~w~~~~--~~~~-----------------~~~~----------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      +. .|.. .+.+.|+++.  ..+.                 ...+          ...|.|.++..+|+|.|.|.+..
T Consensus       143 ~~g~p~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          143 ASGFNIK-DTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EcCccCC-CCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            98 5510 2589999852  2110                 0001          24699999999999999999984

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.63  E-value=1.3e-15  Score=94.97  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=80.5

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec----CceEEeCCCcEEEecCCcEEEEEEe
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQCEI   78 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~   78 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+.. .......|.|..    +|.+...+....+..|+.+.|.|.+
T Consensus        64 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  142 (210)
T 3d9a_H           64 KSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLV  142 (210)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEE
T ss_pred             CceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEE
Confidence            46776642      389999999999999999999853 222235677763    2333322222234679999999999


Q ss_pred             c-C-CCCCCc-EEEEeecCcccCCC--------cc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         79 T-P-YDSGPY-LIAWFKDGRQIPGR--------TS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        79 ~-~-p~~~~~-~~~w~~~~~~~~~~--------~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      . . |   .+ .+.|++++..+...        ..   .+.|.|.....++ |.|.|.+.|..|
T Consensus       143 ~g~~P---~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  202 (210)
T 3d9a_H          143 KGYFP---EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS  202 (210)
T ss_dssp             EEEBS---SCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGG
T ss_pred             eeEec---CCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence            8 4 8   77 99999987653210        00   3457888777766 999999999887

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.63  E-value=3.8e-15  Score=96.88  Aligned_cols=116  Identities=20%  Similarity=0.265  Sum_probs=81.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccC---------CcceeEEEEEEEec---------------CceEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNI---------GGEATAEVRLQVST---------------PYRVDV   59 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~---------~~~~~~~~~l~v~~---------------~~~~~~   59 (150)
                      .|+.+..      .+|.|.+++.+|+|.|.|.+.+.         .........|.|..               ++.+..
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~  145 (280)
T 3fku_X           66 GRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQ  145 (280)
T ss_dssp             TTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBC
T ss_pred             CcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEe
Confidence            5666652      37999999999999999999876         11223345677765               333334


Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGREDR  116 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~~  116 (150)
                      .+. ..+.+|+.+.|.|.+. .+.. .+.+.|++..  ..+.            ...+        ...|.|.++..+|+
T Consensus       146 ~p~-~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  223 (280)
T 3fku_X          146 PPS-VSKGLRQTATLTCTGNSNNVG-NQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDE  223 (280)
T ss_dssp             CSE-EEECTTCCEEEEEECCCCCCC-TTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCc-EEEecCCCEEEEEEecCCCCC-CceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHC
Confidence            444 7889999999999987 3310 3789998732  2111            0000        34599999999999


Q ss_pred             ceEEEEEEeCC
Q psy11131        117 GIYQCIARRSD  127 (150)
Q Consensus       117 g~y~C~~~~~~  127 (150)
                      |.|.|.+.+..
T Consensus       224 G~Y~C~~~~~~  234 (280)
T 3fku_X          224 ADYYCSTWDSS  234 (280)
T ss_dssp             SEEEEEEEETT
T ss_pred             EEEEEEEecCC
Confidence            99999999865

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.63  E-value=3.3e-15  Score=83.11  Aligned_cols=87  Identities=17%  Similarity=0.304  Sum_probs=72.2

Q ss_pred             ecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEE
Q psy11131         52 STPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      ..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   82 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKP---TAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV   82 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEES---CCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecC---CCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEE
Confidence            3455666667778899999999999999 88   899999999887765433        34799999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcCc
Q psy11131        123 ARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~~  142 (150)
                      +.|..| ..+..+.|.|.+.
T Consensus        83 a~N~~G-~~~~~~~l~V~~~  101 (103)
T 3qp3_A           83 CTNYKG-EASDYATLDVTGG  101 (103)
T ss_dssp             EEETTE-EEEEEEEEEEECC
T ss_pred             EEeCCC-cEEEEEEEEEECC
Confidence            999999 5778888888764

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.63  E-value=6.5e-15  Score=96.27  Aligned_cols=107  Identities=21%  Similarity=0.372  Sum_probs=78.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCC-c--c--eeEEEEEEEec----------------CceEEeCCCcEEEecCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIG-G--E--ATAEVRLQVST----------------PYRVDVNPPLLSVHLDGSANFQ   75 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~-~--~--~~~~~~l~v~~----------------~~~~~~~~~~~~~~~g~~~~l~   75 (150)
                      .+|.|.+++.+|+|.|.|.+.+.. +  .  ....+.|.|..                ++.+...+....+.+|+.+.|.
T Consensus       101 ~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~  180 (291)
T 2gki_A          101 AYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMS  180 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEE
T ss_pred             EEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEE
Confidence            479999999999999999998763 1  1  11235677776                2233444556778999999999


Q ss_pred             EEec-CCCCCCc------EEEEeecC--cccC----C--------Ccc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         76 CEIT-PYDSGPY------LIAWFKDG--RQIP----G--------RTS--------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        76 C~~~-~p~~~~~------~~~w~~~~--~~~~----~--------~~~--------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      |.+. .+   .+      .+.|+++.  ....    .        ..+        ...|.|.++..+|+|.|.|.+.+.
T Consensus       181 C~~~~~~---~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  257 (291)
T 2gki_A          181 CKSSQSL---FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYY  257 (291)
T ss_dssp             EEESSCC---EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEcCCcc---ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            9998 66   54      89999863  2110    0        111        247999999999999999999985

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.63  E-value=2.1e-14  Score=90.19  Aligned_cols=115  Identities=14%  Similarity=0.206  Sum_probs=81.4

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCC--cceeEEEEEEEec----CceEE-eCCCcEEEecCCcEEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIG--GEATAEVRLQVST----PYRVD-VNPPLLSVHLDGSANFQ   75 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~----~~~~~-~~~~~~~~~~g~~~~l~   75 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..  ......+.|.|..    +|.+. ..+...  .+|+.+.|.
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~  144 (221)
T 3m8o_H           67 RGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIA  144 (221)
T ss_dssp             TTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEE
T ss_pred             cccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEE
Confidence            36776653      259999999999999999998753  2223345677762    23333 222222  688999999


Q ss_pred             EEec--CCCCCC--cEEEEeecCcccC----------CCcc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         76 CEIT--PYDSGP--YLIAWFKDGRQIP----------GRTS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        76 C~~~--~p~~~~--~~~~w~~~~~~~~----------~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |.+.  .|   .  +.+.|++++..+.          ....   .+.|.+......|.|.|+|.+.+..+
T Consensus       145 C~~~~~~P---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~  211 (221)
T 3m8o_H          145 CLVQGFFP---QEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTN  211 (221)
T ss_dssp             EEEEEEBS---SCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTS
T ss_pred             EEEEeeEC---CCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCC
Confidence            9998  55   4  4899999887651          1211   34688888888899999999999876

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.63  E-value=2.3e-15  Score=99.58  Aligned_cols=109  Identities=20%  Similarity=0.334  Sum_probs=79.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-----eeEEEEEEEecCce--EEeCCCcEEEecCCcEEEEEEec-CCCCCCc--
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-----ATAEVRLQVSTPYR--VDVNPPLLSVHLDGSANFQCEIT-PYDSGPY--   86 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~--~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~--   86 (150)
                      .+|.|.+++.+|+|.|+|.+.+..+.     ....+.|.|..++.  ....+ ...+.+|+.+.|.|.+. .|   ++  
T Consensus        74 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~~~g~p---~~~~  149 (327)
T 2wng_A           74 FSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCESHGFS---PRDI  149 (327)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEEEEEEB---SSCC
T ss_pred             eEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEEEeCcc---CCCc
Confidence            57999999999999999999987543     12346777875432  12222 34567899999999998 55   44  


Q ss_pred             EEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         87 LIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        87 ~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      .+.|++++..+.....             .+.|.+.....++.|.|.|.+.|..+.
T Consensus       150 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          150 TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             EEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             EEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            9999999877653321             235666666666789999999998763

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.63  E-value=2.4e-15  Score=94.41  Aligned_cols=121  Identities=16%  Similarity=0.147  Sum_probs=83.2

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcce---eEEEEEEEec----CceEEeCCCcEEEecCCcEEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGEA---TAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQ   75 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~   75 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..+..   ...+.|.|..    +|.+...+....+.+|+.+.|.
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  146 (220)
T 1pz5_B           67 KGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLG  146 (220)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEE
T ss_pred             CCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEE
Confidence            35776642      389999999999999999998864321   1346777763    3333332222234679999999


Q ss_pred             EEec-C-CCCCCc-EEEEeecCccc-----CC---Ccc---eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         76 CEIT-P-YDSGPY-LIAWFKDGRQI-----PG---RTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        76 C~~~-~-p~~~~~-~~~w~~~~~~~-----~~---~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      |.+. . |   .| .+.|++++...     ..   ...   .+.|.|.....++ |.|.|.|.|..| ....+
T Consensus       147 C~~~g~~P---~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~-~~~~~  214 (220)
T 1pz5_B          147 CLVKGYFP---EPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPAS-KVDLI  214 (220)
T ss_dssp             EEEEEEBS---SCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGG-TEEEE
T ss_pred             EEEEEEeC---CCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCc-cEeee
Confidence            9998 5 8   78 99999887631     10   011   3567887777766 999999999887 34443

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.62  E-value=2.7e-15  Score=94.80  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=78.2

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc------c---eeEEEEEEEec----CceEEeCCCcEEEecCC
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG------E---ATAEVRLQVST----PYRVDVNPPLLSVHLDG   70 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~------~---~~~~~~l~v~~----~~~~~~~~~~~~~~~g~   70 (150)
                      .|+.+..      .+|.|.+++.+|+|.|.|.+.+..+      .   ....+.|.|..    +|.+...+....+.+|+
T Consensus        67 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~  146 (228)
T 3bae_H           67 SRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGS  146 (228)
T ss_dssp             GGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCS
T ss_pred             CcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCC
Confidence            5666642      5899999999999999999987643      1   11236788873    33443322223356899


Q ss_pred             cEEEEEEec-C-CCCCCc-EEEEeecCcccCCC--------cc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         71 SANFQCEIT-P-YDSGPY-LIAWFKDGRQIPGR--------TS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        71 ~~~l~C~~~-~-p~~~~~-~~~w~~~~~~~~~~--------~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+.|.|.+. . |   .+ .+.|++++..+...        ..   ...|.|.....++ |.|+|.+.|..+
T Consensus       147 ~~~l~C~~~g~~P---~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~  214 (228)
T 3bae_H          147 SVTLGCLVKGYFP---EPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPAS  214 (228)
T ss_dssp             EEEEEEEEEEEBS---SCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             CEEEEEEEccEeC---CCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCC
Confidence            999999998 4 7   66 99999987643210        10   3457777777655 999999999877

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.62  E-value=9.2e-15  Score=93.22  Aligned_cols=117  Identities=21%  Similarity=0.250  Sum_probs=80.0

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCc-------------eEEeCCCcEEEecCC
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPY-------------RVDVNPPLLSVHLDG   70 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~-------------~~~~~~~~~~~~~g~   70 (150)
                      ..|+.+..    .+|.|.+++.+|+|.|.|.+.+..+. ....+.|.|..++             .....+....+.+|+
T Consensus        64 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  143 (247)
T 1svz_A           64 PDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGE  143 (247)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTC
T ss_pred             CCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCC
Confidence            35666543    37999999999999999999886443 2234577777542             122223334588999


Q ss_pred             cEEEEEEec-CCCCCCcEEEEeecC--ccc------CC-----------Ccc----------eeeEEEccCCCCCCceEE
Q psy11131         71 SANFQCEIT-PYDSGPYLIAWFKDG--RQI------PG-----------RTS----------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        71 ~~~l~C~~~-~p~~~~~~~~w~~~~--~~~------~~-----------~~~----------~~~l~~~~~~~~~~g~y~  120 (150)
                      .+.|.|.+. .+.. .+.+.|+++.  ...      ..           ..+          ...|.|.++..+|+|.|.
T Consensus       144 ~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~  222 (247)
T 1svz_A          144 TVKISCKATNYAFT-DYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYF  222 (247)
T ss_dssp             CEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             cEEEEEEEcCcccC-CcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEE
Confidence            999999998 5300 4689999853  111      00           111          248999999999999999


Q ss_pred             EEEEeC
Q psy11131        121 CIARRS  126 (150)
Q Consensus       121 C~~~~~  126 (150)
                      |.+.|.
T Consensus       223 C~a~n~  228 (247)
T 1svz_A          223 CVRDRH  228 (247)
T ss_dssp             EEEEEG
T ss_pred             EEEecc
Confidence            999985

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.62  E-value=5.8e-15  Score=94.67  Aligned_cols=126  Identities=14%  Similarity=0.175  Sum_probs=82.6

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCC----cceeEEEEEEEe----cCceEEeCCCcEEEecCCcEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIG----GEATAEVRLQVS----TPYRVDVNPPLLSVHLDGSANF   74 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l   74 (150)
                      .+|+.+..      .+|.|.+++.+|+|.|.|.+.+..    ......+.|.|.    .+|.+...+....+..|+.+.|
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  144 (253)
T 3liz_H           65 KGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTL  144 (253)
T ss_dssp             TTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEE
T ss_pred             CCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEE
Confidence            35666653      349999999999999999998752    222334577776    2344442233334557999999


Q ss_pred             EEEec--CCCCCCc-EEEEeecCcccC--------CCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         75 QCEIT--PYDSGPY-LIAWFKDGRQIP--------GRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        75 ~C~~~--~p~~~~~-~~~w~~~~~~~~--------~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      .|.+.  .|   .+ .+.|.+++..+.        ....   .+.|.+.....+| |.|+|.+.+..+ .......+.+
T Consensus       145 ~C~~~g~~P---~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~-~~~~~~~~~~  218 (253)
T 3liz_H          145 GCLVKGYFP---EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS-STKVDKKIVP  218 (253)
T ss_dssp             EEEEEEEBS---SCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGG-TEEEEEECCC
T ss_pred             EEEEeeEeC---CCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCC-CcceEEEecC
Confidence            99998  56   55 899999876321        0011   3578888888888 999999999876 3444444443

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.62  E-value=2.4e-14  Score=90.73  Aligned_cols=126  Identities=15%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCC--c----ceeEEEEEEEec----CceEEe-CCCcEEEecC-C
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIG--G----EATAEVRLQVST----PYRVDV-NPPLLSVHLD-G   70 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~--~----~~~~~~~l~v~~----~~~~~~-~~~~~~~~~g-~   70 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..  +    .....+.|.|..    +|.+.. .+. .....| +
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~  142 (232)
T 1dn0_B           64 KSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTS  142 (232)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CC
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCC
Confidence            46777652      289999999999999999998321  1    112345788875    233322 222 223467 8


Q ss_pred             cEEEEEEec--CCCCCCc-EEEEee-cCcccCC---------Ccc---eeeEEEccCCC--CCCceEEEEEEeCCCCcee
Q psy11131         71 SANFQCEIT--PYDSGPY-LIAWFK-DGRQIPG---------RTS---STSLVINPVGR--EDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        71 ~~~l~C~~~--~p~~~~~-~~~w~~-~~~~~~~---------~~~---~~~l~~~~~~~--~~~g~y~C~~~~~~g~~~~  132 (150)
                      .+.|.|.+.  .|   .+ .+.|++ ++..+..         ...   .+.|.|.....  +|.|.|.|.+.|..+ ...
T Consensus       143 ~v~L~C~~~g~~P---~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~-~~~  218 (232)
T 1dn0_B          143 SVAVGCLAQDFLP---DSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG-NKE  218 (232)
T ss_dssp             SEEEEEEEEEEBS---SCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC-CEE
T ss_pred             cEEEEEEEEEEeC---CCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCC-Ccc
Confidence            999999998  47   66 999999 7766532         011   34677777765  778999999999887 333


Q ss_pred             eeEEEEE
Q psy11131        133 GSAELQL  139 (150)
Q Consensus       133 ~~~~l~v  139 (150)
                      ....+.+
T Consensus       219 ~~~~i~~  225 (232)
T 1dn0_B          219 KNVPLPV  225 (232)
T ss_dssp             EEEECCC
T ss_pred             eeEecCC
Confidence            4444443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.61  E-value=2.7e-15  Score=102.72  Aligned_cols=116  Identities=25%  Similarity=0.328  Sum_probs=84.3

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec--
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT--   79 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~--   79 (150)
                      .|+.+..    .+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..   +|.+...+......+|..+.|.|.+.  
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~  143 (438)
T 1qgc_4           64 DRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  143 (438)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             CcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccc
Confidence            5665542    479999999999999999999876532 3445667753   34444322222223578899999997  


Q ss_pred             CCCCCCc-EEEEeecCcccCCCc------------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 PYDSGPY-LIAWFKDGRQIPGRT------------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 ~p~~~~~-~~~w~~~~~~~~~~~------------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|   .+ .+.|++++..+....            .   ...|.|..+..+|.|.|.|.+.|..+
T Consensus       144 ~p---~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  205 (438)
T 1qgc_4          144 YP---KDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  205 (438)
T ss_dssp             BS---SCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             cC---CCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEeccc
Confidence            56   66 999999987665430            0   34788999999999999999999877

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.4e-14  Score=80.16  Aligned_cols=86  Identities=30%  Similarity=0.520  Sum_probs=71.3

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|.
T Consensus         8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~   84 (100)
T 2edj_A            8 PPIILQGPANQTLAVDGTALLKCKATGDP---LPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSS   84 (100)
T ss_dssp             SCEEEECCCCEEEESSSEEEECCEEECSS---CCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECS
T ss_pred             CCEEEeCcCCEEEcCCCcEEEEEEEEEcC---CCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcC
Confidence            45666667778889999999999999 88   899999999877653211      457999999999999999999999


Q ss_pred             CCCceeeeEEEEEcCcC
Q psy11131        127 DGDVAQGSAELQLGGTR  143 (150)
Q Consensus       127 ~g~~~~~~~~l~v~~~p  143 (150)
                      .| .....+.|.|.++|
T Consensus        85 ~g-~~~~~~~l~V~~~~  100 (100)
T 2edj_A           85 SG-ETSWSAVLDVTESG  100 (100)
T ss_dssp             SC-CCBCCEEEEEESCC
T ss_pred             CC-CEEEEEEEEEecCC
Confidence            98 56788888887754

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.61  E-value=1.5e-14  Score=91.05  Aligned_cols=118  Identities=12%  Similarity=0.155  Sum_probs=81.1

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc------ceeEEEEEEEec----CceEEeCCCcEEEecCCcE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG------EATAEVRLQVST----PYRVDVNPPLLSVHLDGSA   72 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~   72 (150)
                      +.|+.+..      .+|.|.+++.+|+|.|.|.+.+..+      .....+.|.|..    +|.+...+....+.+|+.+
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v  144 (223)
T 1dee_B           65 KGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTV  144 (223)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEE
T ss_pred             CCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcE
Confidence            36777653      4799999999999999999987642      112335788873    2333221111123578999


Q ss_pred             EEEEEec--CCCCCCc-EEEEee-cCcccCC---------Ccc---eeeEEEccCCC--CCCceEEEEEEeCCCC
Q psy11131         73 NFQCEIT--PYDSGPY-LIAWFK-DGRQIPG---------RTS---STSLVINPVGR--EDRGIYQCIARRSDGD  129 (150)
Q Consensus        73 ~l~C~~~--~p~~~~~-~~~w~~-~~~~~~~---------~~~---~~~l~~~~~~~--~~~g~y~C~~~~~~g~  129 (150)
                      .|.|.+.  .|   .+ .+.|++ ++..+..         ...   .+.|.+.....  +|.|.|.|.+.|..+.
T Consensus       145 ~L~C~~~g~~P---~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~  216 (223)
T 1dee_B          145 AVGCLAQDFLP---DSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN  216 (223)
T ss_dssp             EEEEEEEEEBS---SCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred             EEEEEEEEEeC---CCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence            9999998  47   66 999999 8776542         011   34577766655  6789999999998873

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.61  E-value=9.9e-15  Score=92.95  Aligned_cols=117  Identities=20%  Similarity=0.223  Sum_probs=79.2

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCce-------------EEeCCCcEEEecCC
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYR-------------VDVNPPLLSVHLDG   70 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~-------------~~~~~~~~~~~~g~   70 (150)
                      +.|+.+..    .+|.|.+++.+|+|.|.|.+.+..+. ....+.|.|..++.             ....+....+.+|+
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  138 (242)
T 2znx_A           59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQ  138 (242)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTS
T ss_pred             CCCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCC
Confidence            45666542    47999999999999999999986442 22345777776432             12222234588999


Q ss_pred             cEEEEEEec-CCCCCCcEEEEeecC--cccC-------C---------Ccc----------eeeEEEccCCCCCCceEEE
Q psy11131         71 SANFQCEIT-PYDSGPYLIAWFKDG--RQIP-------G---------RTS----------STSLVINPVGREDRGIYQC  121 (150)
Q Consensus        71 ~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~-------~---------~~~----------~~~l~~~~~~~~~~g~y~C  121 (150)
                      .+.|.|.+. .|.. .+.+.|++..  ..+.       .         ..+          ...|.|.++..+|+|.|.|
T Consensus       139 ~v~L~C~~~g~~~~-~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  217 (242)
T 2znx_A          139 TLSLTCSVTGDSIT-SDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYC  217 (242)
T ss_dssp             CEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             eEEEEEEEEccccC-CcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEE
Confidence            999999998 5400 4789999842  2110       0         111          2479999999999999999


Q ss_pred             EEEeC
Q psy11131        122 IARRS  126 (150)
Q Consensus       122 ~~~~~  126 (150)
                      .+.+.
T Consensus       218 ~a~~~  222 (242)
T 2znx_A          218 ANXDG  222 (242)
T ss_dssp             EETTS
T ss_pred             eccCC
Confidence            99874

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.61  E-value=1.8e-14  Score=91.95  Aligned_cols=116  Identities=19%  Similarity=0.205  Sum_probs=79.4

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecC-------------------ceEEeCCCcE
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTP-------------------YRVDVNPPLL   64 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~-------------------~~~~~~~~~~   64 (150)
                      ..|+....    .+|.|.+++.+|+|.|.|.+.+..+. ......|.|..+                   +.....+...
T Consensus        62 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (250)
T 3esu_F           62 PSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE  141 (250)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCE
T ss_pred             CCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCce
Confidence            35555433    37999999999999999999886543 223456777653                   1222334556


Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccCCC-----------------cc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIPGR-----------------TS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~~~-----------------~~----------~~~l~~~~~~~~  114 (150)
                      .+.+|+.+.|.|.+. .+.. .+.+.|+++  +..+...                 .+          ...|.|.++..+
T Consensus       142 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  220 (250)
T 3esu_F          142 LVKPGASVKISCKDSGYAFS-SSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSV  220 (250)
T ss_dssp             EECTTCCEEEEEECCSTTGG-GSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCceEEEEEEecCCccc-CCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcc
Confidence            788999999999987 3311 579999986  3322100                 00          236999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |+|.|.|.+.+
T Consensus       221 DsG~Y~C~~~~  231 (250)
T 3esu_F          221 DSAVYFCARSG  231 (250)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cCEEEEEEEec
Confidence            99999999996

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.61  E-value=6.8e-15  Score=94.30  Aligned_cols=116  Identities=22%  Similarity=0.326  Sum_probs=78.6

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc---eeEEEEEEEecCce--------------------EEeCCC
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE---ATAEVRLQVSTPYR--------------------VDVNPP   62 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~--------------------~~~~~~   62 (150)
                      .|+.+..    .+|.|.+++.+|+|.|.|.+.+..+.   ....+.|.|..++.                    ....+.
T Consensus        63 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (256)
T 3ux9_B           63 DRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG  142 (256)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC
T ss_pred             CcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC
Confidence            4665543    37999999999999999999875432   23446777775431                    112223


Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------CC---------------------cceeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------GR---------------------TSSTSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------~~---------------------~~~~~l~~~~~~  112 (150)
                      ...+.+|+.+.|.|.+. .+.. .+.+.|+++.  ..+.      ..                     .....|.|.++.
T Consensus       143 ~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  221 (256)
T 3ux9_B          143 GGLVQPGGSLRLSCAASGFTFS-SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLR  221 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEcCCCeEEEEEEEeCCccc-ccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCC
Confidence            34588999999999997 4311 5789998762  2110      00                     003359999999


Q ss_pred             CCCCceEEEEEEeC
Q psy11131        113 REDRGIYQCIARRS  126 (150)
Q Consensus       113 ~~~~g~y~C~~~~~  126 (150)
                      .+|+|.|.|.+.+.
T Consensus       222 ~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          222 AEDTAVYYCARYID  235 (256)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             hhhCEEEEEEEEcC
Confidence            99999999999985

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.61  E-value=1.1e-14  Score=80.52  Aligned_cols=85  Identities=21%  Similarity=0.370  Sum_probs=69.9

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++...|.|.|.|.+
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p---~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLP---APDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEES---CCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeC---CCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence            44555566778889999999999999 88   899999999877654432         248999999999999999999


Q ss_pred             EeCCCCceeeeEEEEEcCc
Q psy11131        124 RRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v~~~  142 (150)
                      .|..| .....+.|.|.+.
T Consensus        82 ~n~~g-~~~~~~~l~V~~~   99 (100)
T 2kdg_A           82 KNRAG-EATFTVQLDVLAK   99 (100)
T ss_dssp             EETTE-EEEEEEEEEEECC
T ss_pred             EcCCC-eEEEEEEEEEEec
Confidence            99999 5778888888654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.60  E-value=2.9e-14  Score=78.65  Aligned_cols=84  Identities=20%  Similarity=0.202  Sum_probs=69.4

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++..+|.|.|.|.+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKP---DPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA   81 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeC---CCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEE
Confidence            34555667778899999999999999 88   899999999887764432         347999999999999999999


Q ss_pred             EeCCCCceeeeEEEEEcC
Q psy11131        124 RRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v~~  141 (150)
                      .|..| .....+.|.|.+
T Consensus        82 ~N~~g-~~~~~~~l~V~~   98 (99)
T 1g1c_A           82 INIAG-ETSSHAFLLVQA   98 (99)
T ss_dssp             EETTE-EEEEEEEEEEEC
T ss_pred             EECCC-cEEEEEEEEEec
Confidence            99998 577777887754

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.60  E-value=2.5e-15  Score=96.16  Aligned_cols=116  Identities=24%  Similarity=0.319  Sum_probs=81.4

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec--
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT--   79 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~--   79 (150)
                      .|+.+..    .+|.|.+++.+|+|.|.|.+.+..+.. .....|.|..   +|.+...+......+|+.+.|.|.+.  
T Consensus        98 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~  177 (252)
T 3bkj_L           98 DRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  177 (252)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEE
T ss_pred             CceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeE
Confidence            5665543    389999999999999999998865432 2234677764   34444322222233688999999998  


Q ss_pred             CCCCCCc-EEEEeecCcccCCC-c--------c------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         80 PYDSGPY-LIAWFKDGRQIPGR-T--------S------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        80 ~p~~~~~-~~~w~~~~~~~~~~-~--------~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|   .+ .+.|++++..+... .        .      ...|.|..+..+|.|.|.|.+.|...
T Consensus       178 ~p---~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  239 (252)
T 3bkj_L          178 YP---KDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  239 (252)
T ss_dssp             BS---SCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred             eC---CCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCC
Confidence            44   43 89999998765433 0        0      24588888888899999999998765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.60  E-value=2e-15  Score=99.89  Aligned_cols=119  Identities=14%  Similarity=0.285  Sum_probs=76.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc---eeEEEEE--EEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc-EEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE---ATAEVRL--QVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY-LIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~   89 (150)
                      ..|.|.....+|.|.|+|.+.|..+.   ......+  .+..+|.+...+..  +.+|+.+.|.|.+. .+.  ++ .+.
T Consensus       180 s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p--~~~~v~  255 (327)
T 2wng_A          180 STAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNVTCQVRKFYP--QRLQLT  255 (327)
T ss_dssp             EEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBS--SCEEEE
T ss_pred             EEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEEEEEEccccC--CCcEEE
Confidence            45778777777789999999987654   2333333  23455555443322  56899999999998 440  33 899


Q ss_pred             EeecCcccCCCc---------c----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         90 WFKDGRQIPGRT---------S----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        90 w~~~~~~~~~~~---------~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |++++..+....         .    ...|.|..+..+|.|.|.|.|.|..+...++++.+.+
T Consensus       256 W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~~~  318 (327)
T 2wng_A          256 WLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKV  318 (327)
T ss_dssp             EEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEECC-
T ss_pred             EEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEEEe
Confidence            999987653210         0    2457788888899999999999999866666655544

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.60  E-value=4.3e-15  Score=93.67  Aligned_cols=115  Identities=16%  Similarity=0.180  Sum_probs=80.4

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc-----c---eeEEEEEEEec----CceEE-eCCCcEEEecC
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG-----E---ATAEVRLQVST----PYRVD-VNPPLLSVHLD   69 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~-----~---~~~~~~l~v~~----~~~~~-~~~~~~~~~~g   69 (150)
                      +.|+.+..      .+|.|.+++.+|+|.|.|.+.+..+     .   ....+.|.|..    +|.+. ..+.. .+.+|
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g  143 (225)
T 1op3_H           65 KGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSG  143 (225)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCC
T ss_pred             CCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCC
Confidence            36776652      5899999999999999999988653     1   12345788875    23332 22222 24579


Q ss_pred             CcEEEEEEec-C-CCCCCc-EEEEeecCcccCC---------Ccc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         70 GSANFQCEIT-P-YDSGPY-LIAWFKDGRQIPG---------RTS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        70 ~~~~l~C~~~-~-p~~~~~-~~~w~~~~~~~~~---------~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +.+.|.|.+. . |   .+ .+.|++++..+..         ...   .+.|.|......| |.|+|.|.|..+
T Consensus       144 ~~v~L~C~~~g~~P---~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  213 (225)
T 1op3_H          144 GTAALGCLVKDYFP---EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (225)
T ss_dssp             CEEEEEEEEEEEBS---SCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred             CcEEEEEEEEeEEC---CCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence            9999999998 4 7   66 9999998764321         011   3457888887778 999999999655

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.60  E-value=4.3e-14  Score=91.20  Aligned_cols=117  Identities=21%  Similarity=0.278  Sum_probs=81.5

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCc------------------eE-EeCCCcE
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPY------------------RV-DVNPPLL   64 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~------------------~~-~~~~~~~   64 (150)
                      +.|+.+..    .+|.|.+++.+|+|.|.|.+.+..+. ....+.|.|..++                  .+ ...+...
T Consensus        69 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (264)
T 2gjj_A           69 PDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE  148 (264)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCE
T ss_pred             CccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCE
Confidence            45666543    48999999999999999999886442 2234577887642                  11 1222334


Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC-------C----------Ccc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP-------G----------RTS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~-------~----------~~~----------~~~l~~~~~~~~  114 (150)
                      .+.+|+.+.|.|.+. .+.. .+.+.|+++.  ....       .          ..+          ...|.|.++..+
T Consensus       149 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  227 (264)
T 2gjj_A          149 VVKTGASVKISCKASGYSFT-GYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSE  227 (264)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCcEEEEEEEeCCccC-CeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcc
Confidence            688999999999998 6500 2799999863  2110       0          000          357999999999


Q ss_pred             CCceEEEEEEeC
Q psy11131        115 DRGIYQCIARRS  126 (150)
Q Consensus       115 ~~g~y~C~~~~~  126 (150)
                      |+|.|.|.+.|.
T Consensus       228 DsG~Y~C~a~n~  239 (264)
T 2gjj_A          228 DSADYYCVRSGN  239 (264)
T ss_dssp             GCEEEEEEEECS
T ss_pred             cCEEEEEEEecC
Confidence            999999999985

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.59  E-value=1.2e-14  Score=86.65  Aligned_cols=94  Identities=23%  Similarity=0.269  Sum_probs=75.8

Q ss_pred             EEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCc
Q psy11131         48 RLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRG  117 (150)
Q Consensus        48 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g  117 (150)
                      .+.+..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++...|.|
T Consensus        35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  111 (154)
T 1fhg_A           35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYP---DPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA  111 (154)
T ss_dssp             CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCE
T ss_pred             cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEec---CCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCE
Confidence            34445566777777778899999999999999 88   899999999887754432         248999999999999


Q ss_pred             eEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131        118 IYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       118 ~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .|.|.+.|..| .....+.|.|..+|.+
T Consensus       112 ~Y~C~a~N~~G-~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A          112 KYTCKAVNSLG-EATCTAELLVETMGKE  138 (154)
T ss_dssp             EEEEEEEETTE-EEEEEEEEEEECC---
T ss_pred             EEEEEEEECCC-eEEEEEEEEEeCcCcC
Confidence            99999999999 5778888998877654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.59  E-value=2.2e-14  Score=78.34  Aligned_cols=82  Identities=12%  Similarity=0.168  Sum_probs=66.6

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccCCCcc------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIPGRTS------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      |.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++  ..+.....      ...|.|.++..+|.|.|.|.+.|
T Consensus         3 P~i~~~~~~~~v~~G~~~~l~C~~~g~P---~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            3 PKILTASRKIKIKAGFTHNLEVDFIGAP---DPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CEECCCCCEEEECTTBCCEEEEEEECCS---SCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CeEEcCCCceEEeCCCEEEEEEEEEEcC---CCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            4444455667889999999999999 99   9999999998  66543321      46799999999999999999999


Q ss_pred             CCCCceeeeEEEEEc
Q psy11131        126 SDGDVAQGSAELQLG  140 (150)
Q Consensus       126 ~~g~~~~~~~~l~v~  140 (150)
                      ..| ..+..+.|.|+
T Consensus        80 ~~G-~~~~~~~l~V~   93 (93)
T 1wit_A           80 ELG-EDEAIFEVIVQ   93 (93)
T ss_dssp             TTE-EEEEEEEEEEC
T ss_pred             CCC-eEEEEEEEEEC
Confidence            999 67777777763

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.59  E-value=4.4e-14  Score=77.90  Aligned_cols=84  Identities=21%  Similarity=0.308  Sum_probs=69.0

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++..+|.|.|.|.+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   81 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEP---KPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA   81 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEES---CCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcC---CCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence            45555667777889999999999999 88   899999999887654432         236999999999999999999


Q ss_pred             EeCCCCceeeeEEEEEcC
Q psy11131        124 RRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v~~  141 (150)
                      .|..| .....+.|.|.+
T Consensus        82 ~N~~g-~~~~~~~l~V~~   98 (99)
T 1u2h_A           82 VNEYG-ARQCEARLEVRG   98 (99)
T ss_dssp             EETTE-EEEEEEEEEEEC
T ss_pred             EECCC-ceeEEEEEEEEC
Confidence            99998 577777887754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.59  E-value=1.6e-15  Score=103.81  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=82.0

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc-----ceeEEEEEEEec----CceEEeCCCcEEEecCCcEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG-----EATAEVRLQVST----PYRVDVNPPLLSVHLDGSAN   73 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~   73 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|+|.+.|..+     .......|.|..    +|.+...+....+.+|+.+.
T Consensus       283 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~  362 (438)
T 1qgc_4          283 KGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVT  362 (438)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEE
T ss_pred             CCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEE
Confidence            35665542      3899999999999999999998433     222345677763    33333222222345799999


Q ss_pred             EEEEec-C-CCCCCc-EEEEeecCcccCCCc--------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         74 FQCEIT-P-YDSGPY-LIAWFKDGRQIPGRT--------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        74 l~C~~~-~-p~~~~~-~~~w~~~~~~~~~~~--------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |.|.+. . |   .+ .+.|++++..+....        .   .+.|.|.....+| |.|+|.|.|..|
T Consensus       363 L~C~~~g~~P---~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g  427 (438)
T 1qgc_4          363 LGCLVKGYFP---EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS  427 (438)
T ss_dssp             EEEEEESCBS---SCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGG
T ss_pred             EEEEeccccC---CCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCC
Confidence            999998 5 7   66 999999887654210        0   2357888877778 999999999887

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.59  E-value=2.9e-15  Score=99.94  Aligned_cols=116  Identities=14%  Similarity=0.165  Sum_probs=82.6

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec----CceEEeCCCcEEEecCCcEEEEEEe
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQCEI   78 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~   78 (150)
                      +.|+.+..      .+|.|.+++.+|+|.|+|.+.+..+.....+.|.|..    +|.+...+....+.+|+.+.|.|.+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~  144 (344)
T 1za6_B           65 KGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  144 (344)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEE
Confidence            45776642      4799999999999999999998654444556788873    2333322222234689999999999


Q ss_pred             c-C-CCCCC-cEEEEeecCcccC---------CCcc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         79 T-P-YDSGP-YLIAWFKDGRQIP---------GRTS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        79 ~-~-p~~~~-~~~~w~~~~~~~~---------~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      . . |   . +.+.|++++..+.         ....   ...|.|..+..+| |.|.|.+.|..+
T Consensus       145 ~g~~P---~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~  205 (344)
T 1za6_B          145 KDYFP---EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  205 (344)
T ss_dssp             EEEBS---SCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGG
T ss_pred             eeEEC---CCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence            8 4 5   4 7999999886531         1111   3467888777777 999999999876

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.4e-14  Score=80.00  Aligned_cols=85  Identities=22%  Similarity=0.263  Sum_probs=69.5

Q ss_pred             EecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEE
Q psy11131         51 VSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        51 v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....     ...|.|.++..+|.|.|.|.+.
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   84 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTP---VPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAE   84 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEES---CCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEE
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeC---CCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEE
Confidence            34456666667778899999999999999 88   889999999887654432     4689999999999999999999


Q ss_pred             eCCCCceeeeEEEEE
Q psy11131        125 RSDGDVAQGSAELQL  139 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v  139 (150)
                      |..| .....+.|.|
T Consensus        85 N~~g-~~~~~~~l~V   98 (99)
T 2yr3_A           85 NALG-QVSCSAWVTV   98 (99)
T ss_dssp             CSSC-EEEEECCEEE
T ss_pred             ECCC-eEEEEEEEEE
Confidence            9999 5666666665

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.58  E-value=9.5e-15  Score=100.77  Aligned_cols=116  Identities=13%  Similarity=0.154  Sum_probs=82.7

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc------------ceeEEEEEEEec----CceEEeCCCcEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG------------EATAEVRLQVST----PYRVDVNPPLLSV   66 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~------------~~~~~~~l~v~~----~~~~~~~~~~~~~   66 (150)
                      +.|+.+..      .+|.|.+++.+|+|.|+|.+.+..+            .....+.|.|..    +|.+...+....+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~  144 (457)
T 1hzh_H           65 QDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKS  144 (457)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCC
T ss_pred             cCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccc
Confidence            45776642      4799999999999999999998754            122445777764    3443332222235


Q ss_pred             ecCCcEEEEEEec-C-CCCCC-cEEEEeecCcccCC---------Ccc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         67 HLDGSANFQCEIT-P-YDSGP-YLIAWFKDGRQIPG---------RTS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        67 ~~g~~~~l~C~~~-~-p~~~~-~~~~w~~~~~~~~~---------~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+|+.+.|.|.+. . |   . +.+.|++++..+..         ...   ...|.|..+..+| |.|.|.+.|..+
T Consensus       145 ~~g~~v~L~C~~~g~~P---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~  217 (457)
T 1hzh_H          145 TSGGTAALGCLVKDYFP---EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  217 (457)
T ss_dssp             CTTCCEEEEEEEESBBS---CCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGG
T ss_pred             cCCCcEEEEEEEeEEeC---CCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCC
Confidence            7899999999998 4 5   4 79999998854321         111   2468888888888 999999999766

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.58  E-value=3.2e-14  Score=80.88  Aligned_cols=89  Identities=21%  Similarity=0.316  Sum_probs=73.9

Q ss_pred             cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c---------eeeEEEccCCCCCCceEEE
Q psy11131         53 TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S---------STSLVINPVGREDRGIYQC  121 (150)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~---------~~~l~~~~~~~~~~g~y~C  121 (150)
                      .+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.... .         ...|.|.++..+|.|.|.|
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIP---PPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBS---CCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccC---CCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEE
Confidence            455666677788899999999999999 88   89999999988765422 1         1279999999999999999


Q ss_pred             EEEeCCCCceeeeEEEEEcCcCcc
Q psy11131        122 IARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       122 ~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .+.|..| .....+.|.|..+|+.
T Consensus        91 ~a~N~~G-~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           91 SAVNEAG-VTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEEETTE-EEEEEEEEEEECCSCC
T ss_pred             EEEcCCC-eEEEEEEEEEeCCCCC
Confidence            9999999 5788889999887754

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.58  E-value=1.9e-14  Score=92.77  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=79.1

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc-c--eeEEEEEEEec----CceEEeCCCcEEEecCCcEEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG-E--ATAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQ   75 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~-~--~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~   75 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..+ .  ....+.|.|..    +|.+...+....+..|+.+.|.
T Consensus        71 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~  150 (261)
T 2xqy_G           71 KDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLG  150 (261)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEE
T ss_pred             CCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEE
Confidence            35776642      4899999999999999999988532 1  12345788874    2333322222235679999999


Q ss_pred             EEec--CCCCCCc-EEEEeecCcccCCC--------cc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         76 CEIT--PYDSGPY-LIAWFKDGRQIPGR--------TS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        76 C~~~--~p~~~~~-~~~w~~~~~~~~~~--------~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |.+.  .|   .+ .+.|++++..+...        ..   .+.|.|.....+| |.|.|.+.|...
T Consensus       151 C~~~g~~P---~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~  213 (261)
T 2xqy_G          151 CLVKGYFP---EPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS  213 (261)
T ss_dssp             EEEEEEBS---SCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             EEEEeEeC---CCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence            9998  47   65 99999987654211        01   3567887777777 999999998654

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=81.46  Aligned_cols=89  Identities=26%  Similarity=0.392  Sum_probs=73.9

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++..+|.|.|.|.+
T Consensus         9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm3_A            9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLP---TPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA   85 (110)
T ss_dssp             CCEEEECCCEEEEESSSCBCCEEEEECSS---CCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred             CCcEEeCCCcEEEeCCCEEEEEEEEEEcC---CCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence            45566667778899999999999999 88   899999999877654432         247999999999999999999


Q ss_pred             EeCCCCceeeeEEEEEcCcCccc
Q psy11131        124 RRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      .|..| .....+.|.|.++|...
T Consensus        86 ~n~~g-~~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           86 TNRAG-QNSFSLELVVAAKESGP  107 (110)
T ss_dssp             ECSSC-EEEECCEEEEECCCCSS
T ss_pred             ECCCC-EEEEEEEEEEeCCCCCC
Confidence            99999 57888899998876543

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=5.1e-14  Score=80.21  Aligned_cols=79  Identities=11%  Similarity=0.173  Sum_probs=67.4

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      +....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....       ...|.|.++..+|.|.|.|.+.|..| ..+
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-~~~  106 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKP---RPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENM-KDT  106 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEES---CCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSC-EEC
T ss_pred             CCCEEEECCCEEEEEEEEccCC---CCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCC-eEE
Confidence            3567888999999999999 89   899999999887753221       35699999999999999999999999 688


Q ss_pred             eeEEEEEcCcC
Q psy11131        133 GSAELQLGGTR  143 (150)
Q Consensus       133 ~~~~l~v~~~p  143 (150)
                      ..+.|.|.+.|
T Consensus       107 ~~~~l~V~~~P  117 (118)
T 2e7c_A          107 ATIRIRVVEKA  117 (118)
T ss_dssp             CEEEEEEECCC
T ss_pred             EEEEEEEEcCC
Confidence            88999998776

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.58  E-value=7e-15  Score=94.61  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc----------c---eeEEEEEEEec----CceEEeCCCcEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG----------E---ATAEVRLQVST----PYRVDVNPPLLS   65 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~----------~---~~~~~~l~v~~----~~~~~~~~~~~~   65 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..+          .   ....+.|.|..    +|.+........
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~  144 (257)
T 3bn9_D           65 KGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSK  144 (257)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC---
T ss_pred             CCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCccc
Confidence            36776652      4799999999999999999987643          1   11235788874    344433222233


Q ss_pred             EecCCcEEEEEEec--CCCCCCc-EEEEeecCcccCCC---------cc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPY-LIAWFKDGRQIPGR---------TS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~-~~~w~~~~~~~~~~---------~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +..|+.+.|.|.+.  .|   .+ .+.|++++..+...         ..   .+.|.|......+ |.|+|.+.|...
T Consensus       145 ~~~g~~v~L~C~~~g~~P---~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~  218 (257)
T 3bn9_D          145 STSGGTAALGCLVKDYFP---EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  218 (257)
T ss_dssp             --------CCCEEEEEBS---SCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred             ccCCCcEEEEEEEeeEEC---CCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence            56788999999998  47   66 99999987653211         01   2345666666567 999999999654

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.57  E-value=9.8e-15  Score=94.18  Aligned_cols=117  Identities=21%  Similarity=0.340  Sum_probs=79.9

Q ss_pred             CceEEeC-----CeEEEcCCCCCCCeEEEEEeccC--CcceeEEEEEEEec------CceEE-eCCCcEEEecCCcEEEE
Q psy11131         10 PRTRVLG-----PILAIEGVTAEDSGTYRCSSSNI--GGEATAEVRLQVST------PYRVD-VNPPLLSVHLDGSANFQ   75 (150)
Q Consensus        10 ~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~~l~v~~------~~~~~-~~~~~~~~~~g~~~~l~   75 (150)
                      .|+.+..     .+|.|.+++.+|+|.|+|.+.+.  .........|.|..      +|.+. ..+....+.+|+.+.|.
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~  167 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV  167 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEE
Confidence            6776653     57999999999999999999873  22334455677775      33332 23333334458999999


Q ss_pred             EEec-CCCCCCc-EEEEeecCcccCCC---------------cc----eeeEEEccCCCCC-CceEEEEEEeCCC
Q psy11131         76 CEIT-PYDSGPY-LIAWFKDGRQIPGR---------------TS----STSLVINPVGRED-RGIYQCIARRSDG  128 (150)
Q Consensus        76 C~~~-~p~~~~~-~~~w~~~~~~~~~~---------------~~----~~~l~~~~~~~~~-~g~y~C~~~~~~g  128 (150)
                      |.+. .+.  .+ .+.|++++..+...               ..    ...|.+.....+| .|.|+|.+.+...
T Consensus       168 C~~~g~~p--~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          168 CLATGFYP--DHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             EEEEEEBS--SCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EEECcccC--CCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence            9998 440  34 89999988766431               11    2456666666666 8999999998754

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=5.4e-14  Score=79.11  Aligned_cols=89  Identities=20%  Similarity=0.317  Sum_probs=72.4

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c---------eeeEEEccCCCCCCceEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S---------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~---------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.... .         ...|.|.++..+|.|.|.|.
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm2_A            8 APFFEMKLKHYKIFEGMPVTFTCRVAGNP---KPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM   84 (110)
T ss_dssp             CCCBSSCCCCEEEETTCCEEEEEEBCCSS---CCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEE
T ss_pred             CCEEEecCcCeEEeCCCeEEEEEEEEecC---CCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEE
Confidence            45555566778899999999999999 88   89999999988775422 1         23699999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcCcCccc
Q psy11131        123 ARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      +.|..| .....+.|.|..+|...
T Consensus        85 a~N~~g-~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           85 AANPQG-RISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             EECTTC-CEEECCCEEEECCSCCS
T ss_pred             EEECCC-eEEEEEEEEEECCCCCC
Confidence            999999 57788888888776543

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.57  E-value=1e-15  Score=96.76  Aligned_cols=109  Identities=21%  Similarity=0.304  Sum_probs=65.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec---CceEEeCCCcEEEecCCcEEEEEEec-C-CCCCCc-EEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQCEIT-P-YDSGPY-LIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~-~~~   89 (150)
                      .+|.|.+++.+|+|.|.|.+.+..+.. .....|.|..   +|.+...+......+|+.+.|.|.+. . |   .+ .+.
T Consensus        93 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p---~~~~v~  169 (233)
T 3bqu_C           93 FVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYP---KDINVK  169 (233)
T ss_dssp             EEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS---SCEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccC---CceEEE
Confidence            379999999999999999998865432 2223466654   34444322222223688999999998 3 4   43 799


Q ss_pred             EeecCcccCCC-c--------c------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         90 WFKDGRQIPGR-T--------S------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        90 w~~~~~~~~~~-~--------~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |++++..+... .        .      ...|.|.....+|.|.|.|.+.|...
T Consensus       170 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          170 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             EEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            99988765433 0        0      24677888888899999999998754

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.57  E-value=6.6e-14  Score=76.15  Aligned_cols=83  Identities=17%  Similarity=0.262  Sum_probs=67.7

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      .+...|....+.+|+.+.|.|.+. .|   .+.+.|++++..+.... ...|.|.++..+|.|.|.|.+.|..|...+..
T Consensus         5 ~i~~~p~~~~v~~G~~~~l~C~~~g~p---~p~i~W~~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~   80 (91)
T 3bfo_A            5 QICVEPTSQKLMPGSTLVLQCVAVGSP---IPHYQWFKNELPLTHET-KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKK   80 (91)
T ss_dssp             EEEECCCCEEECTTSCEEEECEEECSS---CCEEEEEETTEECTTCC-SSEEEESSCCGGGCEEEEEEEECSSCEEECCC
T ss_pred             EEEECCCccEecCCCcEEEEEEeccCC---CCEEEEEcCCeeCCcCC-CCeEEECCCCHHhCEEEEEEEEcCCCCEEeee
Confidence            444566677889999999999998 88   89999999988776544 56899999999999999999999998545567


Q ss_pred             EEEEEcCc
Q psy11131        135 AELQLGGT  142 (150)
Q Consensus       135 ~~l~v~~~  142 (150)
                      +.+.|.+.
T Consensus        81 ~~l~V~~~   88 (91)
T 3bfo_A           81 VEIIIDEL   88 (91)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEehh
Confidence            88877553

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.57  E-value=6.8e-14  Score=77.12  Aligned_cols=84  Identities=24%  Similarity=0.329  Sum_probs=68.9

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p---~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   82 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEP---RPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK   82 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEES---CCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecC---CCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEE
Confidence            44555666778899999999999999 88   899999999887754433        2379999999999999999999


Q ss_pred             eCCCCceeeeEEEEEcC
Q psy11131        125 RSDGDVAQGSAELQLGG  141 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~  141 (150)
                      |..| .....+.|.|.+
T Consensus        83 n~~g-~~~~~~~l~V~~   98 (99)
T 3puc_A           83 NSAG-SVSSSCKLTIKA   98 (99)
T ss_dssp             ETTE-EEEEEEEEEEEC
T ss_pred             eCCC-cEeEEEEEEEEe
Confidence            9998 577777777753

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.56  E-value=1.2e-13  Score=89.17  Aligned_cols=117  Identities=24%  Similarity=0.295  Sum_probs=77.7

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCce-----------------------EEeC
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYR-----------------------VDVN   60 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~-----------------------~~~~   60 (150)
                      +.|+.+..    .+|.|.+++.+|+|.|.|.+.+..+. ....+.|.|...+.                       ....
T Consensus        78 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~  157 (268)
T 1x9q_A           78 PDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDE  157 (268)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEE
T ss_pred             cccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEEC
Confidence            45666542    47999999999999999999886442 22335666664321                       1122


Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc-------------------CCCcc----------eeeEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI-------------------PGRTS----------STSLVI  108 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~-------------------~~~~~----------~~~l~~  108 (150)
                      +....+.+|+.+.|.|.+. .+.. .+.+.|++..  ..+                   ....+          ...|.|
T Consensus       158 ~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  236 (268)
T 1x9q_A          158 TGGGLVQPGGAMKLSCVTSGFTFG-HYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQM  236 (268)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGG-GCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             CCceEecCCCcEEEEEEecCcccc-ccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEE
Confidence            3346788999999999998 5400 3789998742  211                   00111          247999


Q ss_pred             ccCCCCCCceEEEEEEeC
Q psy11131        109 NPVGREDRGIYQCIARRS  126 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~~  126 (150)
                      .++..+|+|.|.|.+.+.
T Consensus       237 ~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          237 NNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCCHHHCEEEEEEEccC
Confidence            999999999999999874

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.56  E-value=4.5e-14  Score=89.35  Aligned_cols=128  Identities=14%  Similarity=0.175  Sum_probs=79.3

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCC--------cceeEEEEEEEe----cCceEEeCCCcEEEecCCc
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIG--------GEATAEVRLQVS----TPYRVDVNPPLLSVHLDGS   71 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~--------~~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~   71 (150)
                      .|+.+..      .+|.|.+++.+|+|.|.|.+.+..        ........|.|.    .+|.+...+....+..|+.
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~  149 (232)
T 3qhz_H           70 TRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGT  149 (232)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CE
T ss_pred             CceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCc
Confidence            5776653      359999999999999999998652        112233567775    2344442223334556899


Q ss_pred             EEEEEEec-CCCCCCcEEEEeecCcccCC---------Ccc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131         72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPG---------RTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ  138 (150)
Q Consensus        72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~---------~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~  138 (150)
                      +.|.|.+. .+.. ...+.|.+++..+..         ...   .+.|.+......| |.|+|.+.+..+ .......+.
T Consensus       150 v~L~C~~~~~~P~-~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~-~~~~~~~l~  226 (232)
T 3qhz_H          150 AALGCLVKDYFPE-PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS-NTKVDKRVE  226 (232)
T ss_dssp             EEEEEEEEEEBSS-CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGG-TEEEEEECC
T ss_pred             EEEEEEEeeEeCC-CeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCC-CccEEEEeC
Confidence            99999998 3310 347889988753211         111   3567788887788 999999999876 344444444


Q ss_pred             Ec
Q psy11131        139 LG  140 (150)
Q Consensus       139 v~  140 (150)
                      +.
T Consensus       227 ~~  228 (232)
T 3qhz_H          227 PK  228 (232)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.7e-14  Score=80.35  Aligned_cols=88  Identities=28%  Similarity=0.342  Sum_probs=71.3

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|.
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p---~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSP---VPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTP   84 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSS---CCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECS
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecC---CCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcC
Confidence            44555566778899999999999999 88   899999999887753221      457999999999999999999999


Q ss_pred             CCCceeeeEEEEEcCcCcc
Q psy11131        127 DGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       127 ~g~~~~~~~~l~v~~~p~~  145 (150)
                      .| .....+.|.|.+++..
T Consensus        85 ~g-~~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           85 SG-EATWSAYIEVQEFGVP  102 (118)
T ss_dssp             SC-EEEEECCEEEECCSCC
T ss_pred             CC-cEEEEEEEEEEeCCCC
Confidence            99 5777788888776543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.55  E-value=3.2e-14  Score=90.58  Aligned_cols=116  Identities=22%  Similarity=0.286  Sum_probs=79.7

Q ss_pred             CceEEeC-----CeEEEcCCCCCCCeEEEEEeccC----CcceeEEEEEEEec------CceEE-eCCCcEEEecCCcEE
Q psy11131         10 PRTRVLG-----PILAIEGVTAEDSGTYRCSSSNI----GGEATAEVRLQVST------PYRVD-VNPPLLSVHLDGSAN   73 (150)
Q Consensus        10 ~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~----~~~~~~~~~l~v~~------~~~~~-~~~~~~~~~~g~~~~   73 (150)
                      .|+.+..     .+|.|.+++.+|+|.|.|.+.+.    .........|.|..      +|.+. ..+....+.+|+.+.
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~  143 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  143 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceE
Confidence            6777664     37999999999999999999853    22233445677763      33332 233333345689999


Q ss_pred             EEEEec--CCCCCCc-EEEEeecCcccCCC---------------cc----eeeEEEccCCCCC-CceEEEEEEeCCC
Q psy11131         74 FQCEIT--PYDSGPY-LIAWFKDGRQIPGR---------------TS----STSLVINPVGRED-RGIYQCIARRSDG  128 (150)
Q Consensus        74 l~C~~~--~p~~~~~-~~~w~~~~~~~~~~---------------~~----~~~l~~~~~~~~~-~g~y~C~~~~~~g  128 (150)
                      |.|.+.  .|   .+ .+.|++++..+...               ..    ...|.+.....+| .|.|+|.+.+...
T Consensus       144 l~C~~~g~~p---~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          144 LVCLATGFYP---DHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             EEEEEEEEBS---SCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EEEEEeeEeC---CCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            999988  44   44 89999988766431               11    2347777776667 8999999998754

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.55  E-value=1.3e-14  Score=92.50  Aligned_cols=116  Identities=22%  Similarity=0.371  Sum_probs=79.8

Q ss_pred             CceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCc----ceeEEEEEEEec------CceEE-eCCCcEEEecCCcEE
Q psy11131         10 PRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGG----EATAEVRLQVST------PYRVD-VNPPLLSVHLDGSAN   73 (150)
Q Consensus        10 ~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~------~~~~~-~~~~~~~~~~g~~~~   73 (150)
                      .|+.+..     .+|.|.+++.+|+|.|.|.+.+..+    .....+.|.|..      +|.+. ..+....+.+|+.+.
T Consensus        65 ~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~  144 (246)
T 4dzb_B           65 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  144 (246)
T ss_dssp             GGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEE
Confidence            4666543     3799999999999999999987533    222445677764      23332 233333344589999


Q ss_pred             EEEEec-CCCCCCc--EEEEeecCcccCCC---------------cc----eeeEEEccCCCCC-CceEEEEEEeCCC
Q psy11131         74 FQCEIT-PYDSGPY--LIAWFKDGRQIPGR---------------TS----STSLVINPVGRED-RGIYQCIARRSDG  128 (150)
Q Consensus        74 l~C~~~-~p~~~~~--~~~w~~~~~~~~~~---------------~~----~~~l~~~~~~~~~-~g~y~C~~~~~~g  128 (150)
                      |.|.+. .|   ++  .+.|++++..+...               ..    .+.|.+.....+| .|.|+|.+.+...
T Consensus       145 L~C~~~g~~---p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~  219 (246)
T 4dzb_B          145 LVCLATGFY---PDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  219 (246)
T ss_dssp             EEEEEEEEB---SSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             EEEEEccCc---CCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCC
Confidence            999998 44   33  89999988766432               11    2347777777777 8999999998764

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.54  E-value=1.2e-13  Score=89.70  Aligned_cols=118  Identities=14%  Similarity=0.211  Sum_probs=75.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc---eeEEEEEEEecCceEEeC-CCc---EEEecCCcEEEEEEecCCCCCCcEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE---ATAEVRLQVSTPYRVDVN-PPL---LSVHLDGSANFQCEITPYDSGPYLIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~-~~~---~~~~~g~~~~l~C~~~~p~~~~~~~~   89 (150)
                      +.|.|.+++.+|+|.|+|.+.|..|.   ......|.|..+...... ...   ..+.+|+.+.|.|.+..|   .+.+.
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p---~~~v~  127 (289)
T 3mjg_X           51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDP---QLVVT  127 (289)
T ss_dssp             EEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBSCT---TSCEE
T ss_pred             EEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcCCC---CceEE
Confidence            47999999999999999999987765   344555555533221111 111   568899999999999866   67788


Q ss_pred             EeecC--cccCCCcc-eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         90 WFKDG--RQIPGRTS-STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        90 w~~~~--~~~~~~~~-~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      |.+.+  ..+..... ...+.    ...|.|.|.|.+.+..+...+..+.+.+..
T Consensus       128 w~~~~~~~~~~~~~~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~  178 (289)
T 3mjg_X          128 LHEKKGDVALPVPYDHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQ  178 (289)
T ss_dssp             EEESSCCSCCCCCEETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEECC
T ss_pred             EEeCCCCCccceeecCCcCee----eeccCcEEEEEEEeCCceeeeeeEEEEecC
Confidence            87754  33321110 11111    356899999999987764445556677665

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.54  E-value=8.1e-14  Score=95.79  Aligned_cols=115  Identities=14%  Similarity=0.141  Sum_probs=81.7

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcc---eeEEEEEEEec----CceEE-eCCCcEEEecCCcEEEE
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGE---ATAEVRLQVST----PYRVD-VNPPLLSVHLDGSANFQ   75 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~----~~~~~-~~~~~~~~~~g~~~~l~   75 (150)
                      .|+.+..      .+|.|.+++.+|+|.|.|.+.+..+.   ....+.|.|..    +|.+. ..+. ..+.+|+.+.|.
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~  144 (444)
T 1igt_B           66 GRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLG  144 (444)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC-SSCCCSSCEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEeccc-ccCCCCCcEEEE
Confidence            5776642      48999999999999999999986443   22345777773    23332 2222 223689999999


Q ss_pred             EEec--CCCCCCc-EEEEeecCcccCCC--------cc---eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         76 CEIT--PYDSGPY-LIAWFKDGRQIPGR--------TS---STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        76 C~~~--~p~~~~~-~~~w~~~~~~~~~~--------~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      |.+.  .|   .+ .+.|++++..+...        ..   ...|.|..+...| |.|.|.+.|..+.
T Consensus       145 C~~~g~~P---~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~  208 (444)
T 1igt_B          145 CLVKGYFP---EPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  208 (444)
T ss_dssp             EEEEEEBS---SCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTT
T ss_pred             EEEcceeC---CCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCC
Confidence            9998  46   65 99999987653110        10   3468888888888 9999999999883

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.54  E-value=1.1e-13  Score=88.21  Aligned_cols=127  Identities=19%  Similarity=0.281  Sum_probs=82.4

Q ss_pred             CCCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc-c------eeEEEEEEEecC-------ceEEe-CCCcEEE
Q psy11131          8 PGPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG-E------ATAEVRLQVSTP-------YRVDV-NPPLLSV   66 (150)
Q Consensus         8 ~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~-~------~~~~~~l~v~~~-------~~~~~-~~~~~~~   66 (150)
                      .+.|+.+..      .+|.|.+++.+|+|.|.|.+.+... .      ....+.|.|...       |.... .+....+
T Consensus        65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~  144 (242)
T 1hxm_B           65 PSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAET  144 (242)
T ss_dssp             CTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGG
T ss_pred             cCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhc
Confidence            356777652      4799999999999999999987521 1      123457888752       22221 1222234


Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCc-ccCCCc---------c---eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGR-QIPGRT---------S---STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~-~~~~~~---------~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      .+|+.+.|.|.+.  .|.  .+.+.|.+++. .+....         .   .+.|.+..... + |.|.|.+.|..+ ..
T Consensus       145 ~~g~~v~L~C~~~g~~P~--~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~-~~  219 (242)
T 1hxm_B          145 KLQKAGTYLCLLEKFFPD--VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENN-KN  219 (242)
T ss_dssp             GSSSCEEEEEEEEEESSC--CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTS-GG
T ss_pred             ccCCCceEEEEEeeEECC--CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCC-CC
Confidence            4689999999998  461  37999999876 442211         1   24677766553 4 999999999887 33


Q ss_pred             eeeEEEEE
Q psy11131        132 QGSAELQL  139 (150)
Q Consensus       132 ~~~~~l~v  139 (150)
                      .....+.+
T Consensus       220 ~~~~~~~~  227 (242)
T 1hxm_B          220 GVDQEIIF  227 (242)
T ss_dssp             GSCEEEEE
T ss_pred             CceeEeec
Confidence            34444544

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.53  E-value=7.9e-14  Score=89.21  Aligned_cols=115  Identities=21%  Similarity=0.313  Sum_probs=59.5

Q ss_pred             CCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCC--CCCcEEEEeecC--ccc-
Q psy11131         24 VTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYD--SGPYLIAWFKDG--RQI-   97 (150)
Q Consensus        24 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~--~~~~~~~w~~~~--~~~-   97 (150)
                      +..+|+|.|+|.+.   |.......+.+..++.+...+....+.+|+.+.|.|.+. .|.  ...+.+.|+++.  ..+ 
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~   87 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPK   87 (254)
T ss_dssp             ------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCE
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCce
Confidence            68899999999998   333334444444455666667778899999999999998 550  001889998743  211 


Q ss_pred             ---------CC--Ccc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131         98 ---------PG--RTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus        98 ---------~~--~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                               ..  ..+        ...|.|.++..+|.|.|.|.+.+..+........+.|..
T Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~  150 (254)
T 2c1o_A           88 RLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR  150 (254)
T ss_dssp             EEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC
T ss_pred             EEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC
Confidence                     00  011        237999999999999999999987553233334555553

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=4.9e-14  Score=78.08  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=67.6

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +.+...+....+.+|+.+.|.|.+ .|   .+.+.|++++..+....+        ...|.|.++..+|.|.|.|.+.|.
T Consensus         8 ~~~~~~~~~~~v~~G~~v~l~C~v-~p---~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A            8 LKILTPLTDQTVNLGKEICLKCEI-SE---NIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCSBCCCCEEEETTSCCCEEEEC-SS---CCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CEEeccCCceEEcCCCCEEEEEEe-CC---CCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            344455667789999999999999 88   889999999988765443        247999999999999999999987


Q ss_pred             CCCceeeeEEEEEcCcCc
Q psy11131        127 DGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       127 ~g~~~~~~~~l~v~~~p~  144 (150)
                         ..+.++.|.|.++|.
T Consensus        84 ---~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           84 ---NVTLPAKVHVISGPS   98 (100)
T ss_dssp             ---CCCEEEEEEEECCSC
T ss_pred             ---CeeEEEEEEEeCCCC
Confidence               346778888888774

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.53  E-value=4.9e-13  Score=94.71  Aligned_cols=116  Identities=19%  Similarity=0.298  Sum_probs=83.1

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEecCceE-EeCCCcEEEecCCcE-EEEEEec--CCCC
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRV-DVNPPLLSVHLDGSA-NFQCEIT--PYDS   83 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~-~~~~~~~~~~~g~~~-~l~C~~~--~p~~   83 (150)
                      .|..+.. ++|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.. ...+....+..+... .|.|.+.  .|  
T Consensus       424 ~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P--  501 (581)
T 3o3u_N          424 SVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYP--  501 (581)
T ss_dssp             GTSEECTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBS--
T ss_pred             CcEEEcCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCC--
Confidence            3455544 789999999999999999999987776 67788999864321 111112234555554 5699998  48  


Q ss_pred             CCcEEEEeecCcccCCCcc-------------------eeeEEEccCCCCC-CceEEEEEEeCCC
Q psy11131         84 GPYLIAWFKDGRQIPGRTS-------------------STSLVINPVGRED-RGIYQCIARRSDG  128 (150)
Q Consensus        84 ~~~~~~w~~~~~~~~~~~~-------------------~~~l~~~~~~~~~-~g~y~C~~~~~~g  128 (150)
                       .+.+.|++++..+.....                   .+.|.+..+..+| .+.|+|.+.|..+
T Consensus       502 -~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~  565 (581)
T 3o3u_N          502 -AGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLP  565 (581)
T ss_dssp             -CCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred             -CCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence             899999999887653221                   2458888877444 7889999999864

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.52  E-value=1.8e-14  Score=98.75  Aligned_cols=117  Identities=14%  Similarity=0.170  Sum_probs=82.6

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec----CceEEeCCCcEEEecCCcEEEEEEe
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQCEI   78 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~   78 (150)
                      +.|+.+..      .+|.|.+++.+|+|.|+|.+.+..+.....+.|.|..    +|.+...+....+.+|+.+.|.|.+
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~  143 (434)
T 1igy_B           64 KDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLV  143 (434)
T ss_dssp             TTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEE
T ss_pred             cccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEE
Confidence            35776543      3799999999999999999988544444456777763    2333322222234689999999999


Q ss_pred             c-C-CCCCCc-EEEEeecCcccCC--------Ccc---eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         79 T-P-YDSGPY-LIAWFKDGRQIPG--------RTS---STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        79 ~-~-p~~~~~-~~~w~~~~~~~~~--------~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      . . |   .+ .+.|++++..+..        ...   ...|.|..+..+| |.|.|.+.|..+.
T Consensus       144 ~g~~P---~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~  204 (434)
T 1igy_B          144 KGYFP---EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASS  204 (434)
T ss_dssp             EEEBS---SCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTT
T ss_pred             eeecC---CCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCC
Confidence            8 4 6   66 9999988764310        011   3468888888788 9999999998873

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.52  E-value=5.5e-13  Score=92.47  Aligned_cols=124  Identities=15%  Similarity=0.225  Sum_probs=83.6

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcc------eeEEEEEEEec----CceEEeCCCcEEEecCCcE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGE------ATAEVRLQVST----PYRVDVNPPLLSVHLDGSA   72 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~   72 (150)
                      ..|+.+..      .+|.|.++..+|+|.|+|.+.+..+.      ....+.|.|..    +|.+...+. ....+|+.+
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v  144 (475)
T 1iga_A           66 RGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNV  144 (475)
T ss_pred             CCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeE
Confidence            35666642      47999999999999999999886541      22345777763    233332221 122689999


Q ss_pred             EEEEEec-C-CCCCC-c-EEEEeecCcccCC---------C-cc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131         73 NFQCEIT-P-YDSGP-Y-LIAWFKDGRQIPG---------R-TS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSA  135 (150)
Q Consensus        73 ~l~C~~~-~-p~~~~-~-~~~w~~~~~~~~~---------~-~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~  135 (150)
                      .|.|.+. . |   . + .+.|++++.....         . ..   .+.|.|......|.|.|.|.+.|..+......+
T Consensus       145 ~L~C~~~g~~P---~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v  221 (475)
T 1iga_A          145 VIACLVQGFFP---QEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTV  221 (475)
T ss_pred             EEEEEEeeecC---CCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeE
Confidence            9999998 4 6   5 4 9999987643211         1 11   235777777778999999999998763333444


Q ss_pred             E
Q psy11131        136 E  136 (150)
Q Consensus       136 ~  136 (150)
                      .
T Consensus       222 ~  222 (475)
T 1iga_A          222 P  222 (475)
T ss_pred             e
Confidence            4

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.52  E-value=1.2e-14  Score=90.52  Aligned_cols=109  Identities=14%  Similarity=0.183  Sum_probs=73.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeE--EEEE--EEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCC-cEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATA--EVRL--QVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGP-YLIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~-~~~~   89 (150)
                      ..|.|.++..+|+|.|+|.+.+..+....  .+.+  .+..+|.+...+.......|+.+.|.|.+.  .|   . ..+.
T Consensus        68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P---~~~~v~  144 (207)
T 2vol_A           68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFP---EDITVE  144 (207)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBS---SCCEEE
T ss_pred             EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEEC---CCCEEE
Confidence            57999999999999999999987665322  2222  334455554333221123588999999998  45   4 4999


Q ss_pred             EeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         90 WFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        90 w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |++++..+.....             .+.|.+.....+|.|.|+|.+.|...
T Consensus       145 W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          145 WESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             EEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            9999876542210             12344544445678999999998765

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.52  E-value=5e-13  Score=83.23  Aligned_cols=105  Identities=17%  Similarity=0.229  Sum_probs=77.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEE-eCCCcEEEecCCcEEEEEEec-C-CCCCC----cEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD-VNPPLLSVHLDGSANFQCEIT-P-YDSGP----YLIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~~g~~~~l~C~~~-~-p~~~~----~~~~   89 (150)
                      ..|.|.+++.+|.|.|.|.+.+..+.....+.|+|.++|... ..+.  ....|+.. |.|.+. . |   .    +.+.
T Consensus        59 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P---~~~~~lti~  132 (210)
T 1gsm_A           59 SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTP---VDPNALSFS  132 (210)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBC---CCTTTEEEE
T ss_pred             cEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEccc--eEEeCCce-EEEEeCCCCC---CCCCCcEEE
Confidence            679999999999999999999987777888999999876533 2332  45577888 999998 4 5   3    4899


Q ss_pred             EeecCcccCCCc----------------c------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         90 WFKDGRQIPGRT----------------S------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        90 w~~~~~~~~~~~----------------~------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      |++++..+....                .      .+.+.+.....++.+.|+|.|.+..
T Consensus       133 Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L  192 (210)
T 1gsm_A          133 LLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRL  192 (210)
T ss_dssp             EEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEE
T ss_pred             EEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeC
Confidence            999987764221                0      1223333445556679999999764

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.52  E-value=8.1e-13  Score=72.56  Aligned_cols=80  Identities=20%  Similarity=0.324  Sum_probs=66.6

Q ss_pred             eCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..+....+.+|+.+.|.|.+. . |   .+.+.|++++..+.....        ...|.|.++...|.|.|.|.+.|..|
T Consensus         6 ~~~~~~~v~~G~~v~l~C~~~g~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            6 GQIMHAVGEEGGHVKYVCKIENYDQ---STQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             CCCCCEEECTTCCEEEEEEEESCCT---TCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             ccCcCEEEcCCCcEEEEEEEeccCC---CCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            345567889999999999999 6 8   899999999887654433        23899999999999999999999999


Q ss_pred             CceeeeEEEEEcCc
Q psy11131        129 DVAQGSAELQLGGT  142 (150)
Q Consensus       129 ~~~~~~~~l~v~~~  142 (150)
                       .....+.|.|.+.
T Consensus        83 -~~~~~~~l~V~~~   95 (97)
T 2bk8_A           83 -EDSSYAELFVKGV   95 (97)
T ss_dssp             -EEEEEEEEEETTT
T ss_pred             -eEeEEEEEEEEec
Confidence             5777888888754

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.51  E-value=7.2e-14  Score=88.72  Aligned_cols=116  Identities=21%  Similarity=0.304  Sum_probs=78.4

Q ss_pred             CceEEeC-----CeEEEcCCCCCCCeEEEEEeccC---CcceeEEEEEEEec------CceEE-eCCCcEEEecCCcEEE
Q psy11131         10 PRTRVLG-----PILAIEGVTAEDSGTYRCSSSNI---GGEATAEVRLQVST------PYRVD-VNPPLLSVHLDGSANF   74 (150)
Q Consensus        10 ~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~~l~v~~------~~~~~-~~~~~~~~~~g~~~~l   74 (150)
                      .|+.+..     .+|.|.+++.+|+|.|.|.+.+.   .........|.|..      +|.+. ..+....+..|+.+.|
T Consensus        63 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L  142 (240)
T 3q5y_A           63 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATL  142 (240)
T ss_dssp             TTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred             CeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEE
Confidence            5666543     47999999999999999999732   22233445677763      23332 2333333446889999


Q ss_pred             EEEec--CCCCCCc-EEEEeecCcccCCCcc---------------eeeEEEccCCCCC-CceEEEEEEeCCC
Q psy11131         75 QCEIT--PYDSGPY-LIAWFKDGRQIPGRTS---------------STSLVINPVGRED-RGIYQCIARRSDG  128 (150)
Q Consensus        75 ~C~~~--~p~~~~~-~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~-~g~y~C~~~~~~g  128 (150)
                      .|.+.  .|   .+ .+.|++++..+.....               .+.|.+......| .|.|+|.+.+...
T Consensus       143 ~C~~~g~~P---~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          143 VCLARGFFP---DHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             EEEEEEEBS---SCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EEEEeeEEC---CCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            99998  45   45 7899999877643211               2347777777777 6799999998654

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.51  E-value=7.2e-14  Score=78.18  Aligned_cols=83  Identities=20%  Similarity=0.418  Sum_probs=69.3

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ++.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....        ...|.|.++...|.|.|.|.+.
T Consensus        14 ~~~i~~~p~~~~v~~G~~v~L~C~~~g~p---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           14 AARILTKPRSMTVYEGESARFSCDTDGEP---VPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             CCEEEECCCCEEESSSSCEECCEEEECSS---CCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCEEEECCCCEEEeCCCcEEEEEEEEEcC---CCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            45566677788899999999999999 88   899999999877654433        3689999999999999999999


Q ss_pred             eCCCCceeeeEEEEEc
Q psy11131        125 RSDGDVAQGSAELQLG  140 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~  140 (150)
                      |..| .....+.|.|.
T Consensus        91 N~~G-~~~~~~~l~V~  105 (106)
T 1nct_A           91 NSEG-KQEAEFTLTIQ  105 (106)
T ss_dssp             CSSC-BCCEEEEEEEC
T ss_pred             eCCC-eEEEEEEEEEE
Confidence            9999 57777777775

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.49  E-value=1.7e-13  Score=87.72  Aligned_cols=117  Identities=17%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCC----------------------cceeEEEEEEEe----cCce
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIG----------------------GEATAEVRLQVS----TPYR   56 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~----------------------~~~~~~~~l~v~----~~~~   56 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..                      ......+.|.|.    .+|.
T Consensus        64 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~  143 (248)
T 3u2s_H           64 WGRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPS  143 (248)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCE
T ss_pred             CCcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCE
Confidence            36777643      359999999999999999987631                      111223566776    2333


Q ss_pred             EEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCC---------Ccc---eeeEEEccCCCCCCceEEEE
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG---------RTS---STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~---------~~~---~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +...+.......|+.+.|.|.+.  .|.  ...+.|.+++..+..         +..   .+.|.+......+ |.|+|.
T Consensus       144 v~~~~~~~~~~~g~~~~L~C~~~~~~P~--~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~  220 (248)
T 3u2s_H          144 VFPLAPSSKSTSGGTAALGCLVKDYFPE--PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICN  220 (248)
T ss_dssp             EEEECCC------CEEEEEEEEEEEBSS--CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEE
T ss_pred             EEEeCCCccccCCCcEEEEEEEeeEECC--CeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEE
Confidence            33222333345689999999998  442  468999988753211         111   3467777777777 999999


Q ss_pred             EEeCCC
Q psy11131        123 ARRSDG  128 (150)
Q Consensus       123 ~~~~~g  128 (150)
                      +.+..+
T Consensus       221 v~h~~~  226 (248)
T 3u2s_H          221 VNHKPS  226 (248)
T ss_dssp             EEEGGG
T ss_pred             EEECCC
Confidence            999765

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.49  E-value=3.5e-13  Score=84.34  Aligned_cols=115  Identities=12%  Similarity=0.121  Sum_probs=74.5

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcc---eeEEEEEEEec----CceEEeCCCcEEEecCCcEEEEE
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGE---ATAEVRLQVST----PYRVDVNPPLLSVHLDGSANFQC   76 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C   76 (150)
                      .|+.+..      .+|.|.+++.+|+|.|.|.+.+..+.   ....+.|.|..    +|.+...+....+.+|+.+.|.|
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C  144 (215)
T 1c5d_H           65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGC  144 (215)
T ss_dssp             GGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEE
T ss_pred             CcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEE
Confidence            5666642      38999999999999999999876321   22335778873    23333222112246789999999


Q ss_pred             Eec-C-CCCCCc-EEEEeecCcccCCCc-------ce--eeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         77 EIT-P-YDSGPY-LIAWFKDGRQIPGRT-------SS--TSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        77 ~~~-~-p~~~~~-~~~w~~~~~~~~~~~-------~~--~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+. . |   .+ .+.|.+++..+....       ..  ....+.....++ |.|.|.+.|..+
T Consensus       145 ~~~g~~P---~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~  204 (215)
T 1c5d_H          145 LVKGYFP---EPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPAS  204 (215)
T ss_dssp             EEEEEBS---SCCEEEEGGGTTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGG
T ss_pred             EEeeeEc---CCcEEEEccCCccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCC
Confidence            998 4 7   77 999999876542111       00  111122333345 999999999877

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.48  E-value=6e-13  Score=75.14  Aligned_cols=98  Identities=18%  Similarity=0.263  Sum_probs=75.4

Q ss_pred             cceeEEEEEEEecC-ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccC
Q psy11131         41 GEATAEVRLQVSTP-YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPV  111 (150)
Q Consensus        41 ~~~~~~~~l~v~~~-~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~  111 (150)
                      +.....+.|.|... +.+...+....+.+|+.+.|.|.+. +   .+.+.|++++..+....+        ...|.|.++
T Consensus         5 g~~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~-~---~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v   80 (113)
T 2edh_A            5 SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELS-K---MAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGL   80 (113)
T ss_dssp             CCCCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEES-S---CCCCEEEESSSBCCCSSSEEEEEETTEEEEEECSC
T ss_pred             CCCcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEEC-C---CCcEEEEECCEECCCCCcEEEEECCCEEEEEECCC
Confidence            34455667777754 4666666777899999999999985 3   346899999887765433        247999999


Q ss_pred             CCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcccc
Q psy11131        112 GREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKH  147 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~~  147 (150)
                      ..+|.|.|.|.+    + .....+.|.|..+|..+.
T Consensus        81 ~~~D~G~Y~C~a----~-~~~~~~~l~V~~~p~~~~  111 (113)
T 2edh_A           81 VAEDAGEYLCMC----G-KERTSAMLTVRAMPSGPS  111 (113)
T ss_dssp             CSTTCEEEEEEE----T-TEEEEEEEEECCCCCSSC
T ss_pred             ChhhCEEEEEEe----C-CCCEEEEEEEeCCCCCcc
Confidence            999999999999    4 577889999988876543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.48  E-value=4.8e-14  Score=96.91  Aligned_cols=110  Identities=12%  Similarity=0.209  Sum_probs=79.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe------------------cCceE-EeCCCcEE-EecCCcEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS------------------TPYRV-DVNPPLLS-VHLDGSANFQC   76 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~------------------~~~~~-~~~~~~~~-~~~g~~~~l~C   76 (150)
                      +.|.|.++...| |.|+|.+.|..+.......+.+.                  .+|.+ ...+.... +.+|+.+.|.|
T Consensus       184 s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C  262 (444)
T 1igt_B          184 SSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTC  262 (444)
T ss_dssp             EEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEE
T ss_pred             EEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEE
Confidence            568999999999 99999999987765444444331                  13333 22222222 47899999999


Q ss_pred             Eec-C---CCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         77 EIT-P---YDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        77 ~~~-~---p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      .+. .   |.  .+.+.|++++..+.....             ...|.|..+..+|.|.|.|.+.|..+.
T Consensus       263 ~~~g~~~~p~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~  330 (444)
T 1igt_B          263 VVVDVSEDDP--DVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP  330 (444)
T ss_dssp             EEEEECTTCC--CCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCS
T ss_pred             EEeecccCCC--CeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCC
Confidence            998 4   41  479999999876543211             347899999999999999999998873

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.48  E-value=4.2e-13  Score=73.46  Aligned_cols=84  Identities=21%  Similarity=0.333  Sum_probs=65.0

Q ss_pred             CCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131         60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSA  135 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~  135 (150)
                      .+....+.+|+.+.|.|.+. +   .|.+.|++++..+.....    ...|.|.++..+|.|.|.|.+.|..| .....+
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~-~---~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~~~~~~   81 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLK-D---AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVD-SETWIF   81 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCC-T---TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSC-EEEEEE
T ss_pred             CCCcEEECCCCEEEEEEEeC-C---CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCC-cEEEEE
Confidence            34556788999999999885 4   578999999887765443    46899999999999999999999998 678889


Q ss_pred             EEEEcCcCccccc
Q psy11131        136 ELQLGGTRNIKHY  148 (150)
Q Consensus       136 ~l~v~~~p~~~~~  148 (150)
                      .+.|.+++..+.+
T Consensus        82 ~l~V~~~~~~~~~   94 (95)
T 4hwu_A           82 MVNVTDAAENLYF   94 (95)
T ss_dssp             EEEECCC------
T ss_pred             EEEEeCCcccccc
Confidence            9999888766543

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.48  E-value=7.7e-13  Score=83.61  Aligned_cols=127  Identities=13%  Similarity=0.202  Sum_probs=81.7

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCC-----cc---eeEEEEEEEec----CceEEeCCCcEEEecCC
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIG-----GE---ATAEVRLQVST----PYRVDVNPPLLSVHLDG   70 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~-----~~---~~~~~~l~v~~----~~~~~~~~~~~~~~~g~   70 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..     +.   ....+.|.|..    +|.+...+....+..|+
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~  144 (230)
T 3n9g_H           65 QGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGG  144 (230)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTC
T ss_pred             CCcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCC
Confidence            35777653      249999999999999999987643     11   12335677752    33333222222345789


Q ss_pred             cEEEEEEec--CCCCCCcEEEEeecCcccCC-----------Ccc---eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         71 SANFQCEIT--PYDSGPYLIAWFKDGRQIPG-----------RTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        71 ~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~-----------~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      .+.|.|.+.  .|.  ...+.|  ++..+..           +..   .+.|.+......| |.|+|.+.+..+ .....
T Consensus       145 ~v~L~C~~~~~~P~--~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~-~~~~~  218 (230)
T 3n9g_H          145 TAALGCLVKDYFPE--PVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS-NTKVD  218 (230)
T ss_dssp             EEEEEEEEEEEBSS--CCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGG-TEEEE
T ss_pred             CEEEEEEEEeEECC--CEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCC-CcceE
Confidence            999999998  341  467899  4433321           011   3478888888888 999999999776 34455


Q ss_pred             EEEEEcC
Q psy11131        135 AELQLGG  141 (150)
Q Consensus       135 ~~l~v~~  141 (150)
                      ..+.+.+
T Consensus       219 ~~~~v~~  225 (230)
T 3n9g_H          219 KRVEPKS  225 (230)
T ss_dssp             EECCCCT
T ss_pred             EEccCCC
Confidence            5555544

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=78.23  Aligned_cols=93  Identities=18%  Similarity=0.223  Sum_probs=72.7

Q ss_pred             EEEEEecCc-eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCC
Q psy11131         47 VRLQVSTPY-RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGRED  115 (150)
Q Consensus        47 ~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~  115 (150)
                      +.|.|..++ .+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....         ...|.|.++..+|
T Consensus         5 a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (115)
T 2cr6_A            5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPAN---YEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKD   81 (115)
T ss_dssp             CCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTT---CCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTT
T ss_pred             EEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCC---CCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhh
Confidence            346666654 455667778899999999999999 88   889999999876654322         3479999999999


Q ss_pred             CceEEEEEEeCCCCceeeeEEEEEcCcCcccc
Q psy11131        116 RGIYQCIARRSDGDVAQGSAELQLGGTRNIKH  147 (150)
Q Consensus       116 ~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~~  147 (150)
                      .|.|.|.    .| .....+.|.|..+|.++.
T Consensus        82 ~G~Y~C~----~g-~~~~~~~L~V~~~p~~~~  108 (115)
T 2cr6_A           82 SGTIYFE----AG-DQRASAALRVTEKPSVFS  108 (115)
T ss_dssp             CEEEEEE----ET-TEECCEEEEEECCSSCCS
T ss_pred             CEEEEEE----EC-CeeEEEEEEEECCCceec
Confidence            9999999    34 466778999988876543

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.47  E-value=3.7e-13  Score=87.40  Aligned_cols=117  Identities=21%  Similarity=0.320  Sum_probs=77.0

Q ss_pred             CCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCc------ceeEEEEEEEec------CceEEeC-CCcEEEecCC
Q psy11131          9 GPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGG------EATAEVRLQVST------PYRVDVN-PPLLSVHLDG   70 (150)
Q Consensus         9 ~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~------~~~~~~~-~~~~~~~~g~   70 (150)
                      ..|+.+..     .+|.|.+++.+|+|.|+|.+.+..+      .....+.|.|..      +|.+... +....+.+|+
T Consensus        87 ~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~  166 (279)
T 2wbj_D           87 KDKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQ  166 (279)
T ss_dssp             SSSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHS
T ss_pred             CCcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCC
Confidence            35776653     3799999999999999999988321      112335677765      2333221 2212223688


Q ss_pred             cEEEEEEec-C-CCCCC-cEEEEeecCcccCCC---------------cc----eeeEEEccCCCCC-CceEEEEEEeCC
Q psy11131         71 SANFQCEIT-P-YDSGP-YLIAWFKDGRQIPGR---------------TS----STSLVINPVGRED-RGIYQCIARRSD  127 (150)
Q Consensus        71 ~~~l~C~~~-~-p~~~~-~~~~w~~~~~~~~~~---------------~~----~~~l~~~~~~~~~-~g~y~C~~~~~~  127 (150)
                      .+.|.|.+. . |   . +.+.|++++..+...               ..    .+.|.+......| .|.|+|.+.|..
T Consensus       167 ~v~L~C~~~g~~P---~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~  243 (279)
T 2wbj_D          167 KATLVCLATGFYP---DHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYG  243 (279)
T ss_dssp             CCEEEEEEEEEBS---SCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECC
T ss_pred             ceEEEEEEeeEcC---CCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCC
Confidence            999999998 4 5   4 799999988765421               11    2346666665544 667999999976


Q ss_pred             C
Q psy11131        128 G  128 (150)
Q Consensus       128 g  128 (150)
                      .
T Consensus       244 ~  244 (279)
T 2wbj_D          244 L  244 (279)
T ss_dssp             B
T ss_pred             C
Confidence            5

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.47  E-value=1.1e-13  Score=89.48  Aligned_cols=115  Identities=23%  Similarity=0.281  Sum_probs=77.4

Q ss_pred             ceEEeC-----CeEEEcCCCCCCCeEEEEEeccCC----cceeEEEEEEEec------CceEEe-CCCcEEEecCCcEEE
Q psy11131         11 RTRVLG-----PILAIEGVTAEDSGTYRCSSSNIG----GEATAEVRLQVST------PYRVDV-NPPLLSVHLDGSANF   74 (150)
Q Consensus        11 ~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~------~~~~~~-~~~~~~~~~g~~~~l   74 (150)
                      |+.+..     .+|.|.+++.+|+|.|.|.+.+..    ......+.|.|..      +|.+.. .+....+..|+.+.|
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L  169 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATL  169 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEE
T ss_pred             cEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEE
Confidence            555542     479999999999999999998632    1223345677765      333222 222222345899999


Q ss_pred             EEEec--CCCCCCc-EEEEeecCcccCCC---------------cc----eeeEEEccCCCCC-CceEEEEEEeCCC
Q psy11131         75 QCEIT--PYDSGPY-LIAWFKDGRQIPGR---------------TS----STSLVINPVGRED-RGIYQCIARRSDG  128 (150)
Q Consensus        75 ~C~~~--~p~~~~~-~~~w~~~~~~~~~~---------------~~----~~~l~~~~~~~~~-~g~y~C~~~~~~g  128 (150)
                      .|.+.  .|   .+ .+.|++++..+...               ..    ...|.+.....+| .|.|+|.+.+...
T Consensus       170 ~C~~~g~~P---~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l  243 (270)
T 3qib_D          170 VCLATGFYP---DHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  243 (270)
T ss_dssp             EEEEEEEBS---SCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCB
T ss_pred             EEEecceeC---CCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCC
Confidence            99998  45   55 89999988766431               11    2456666666666 8999999998754

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.46  E-value=2.2e-14  Score=94.89  Aligned_cols=109  Identities=13%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE----ecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCC-cEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV----STPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGP-YLIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v----~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~-~~~~   89 (150)
                      +.|.|.++..+|+|.|+|.+.+..+.......+.+    ..+|.+...+.......|+.+.|.|.+.  .|   . ..+.
T Consensus       178 ~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p---~~~~v~  254 (323)
T 2wqr_A          178 STLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMP---EDISVQ  254 (323)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBS---SCCEEE
T ss_pred             EEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeC---CCcEEE
Confidence            57999999999999999999987543322333321    1344433222111112389999999997  34   3 3899


Q ss_pred             EeecCcccCCCc------------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         90 WFKDGRQIPGRT------------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        90 w~~~~~~~~~~~------------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |++++..+....            .   .+.|.|..+..+|.|.|.|.|.|..+
T Consensus       255 W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  308 (323)
T 2wqr_A          255 WLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA  308 (323)
T ss_dssp             EEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTS
T ss_pred             EEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCC
Confidence            999988764321            0   24688888888899999999999876

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.46  E-value=3.1e-15  Score=85.81  Aligned_cols=96  Identities=22%  Similarity=0.268  Sum_probs=75.6

Q ss_pred             eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE-EEEeecCcccCCC--cc------------eeeE
Q psy11131         43 ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL-IAWFKDGRQIPGR--TS------------STSL  106 (150)
Q Consensus        43 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~-~~w~~~~~~~~~~--~~------------~~~l  106 (150)
                      ....+.|.|..+|.+.. +....+.+|+.+.|.|.+. .|   .|. +.|++++..+...  .+            ...|
T Consensus         3 ~~~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P---~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L   78 (122)
T 2cry_A            3 SGSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTP---PPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTL   78 (122)
T ss_dssp             SSCCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSS---CCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEE
T ss_pred             cceEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecC---CCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEE
Confidence            34456778888887766 6667788999999999999 88   775 9999988766531  11            2379


Q ss_pred             EEccCCCCCC-ceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        107 VINPVGREDR-GIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       107 ~~~~~~~~~~-g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      .|.++..+|. |.|.|.+.|..| .....+.|.|.+++
T Consensus        79 ~I~~v~~~D~~G~Y~C~a~N~~G-~~~~~~~l~V~~~~  115 (122)
T 2cry_A           79 TISNIVRADFQTIYNCTAWNSFG-SDTEIIRLKEQGSE  115 (122)
T ss_dssp             ECTTCCHHHHHSCEEEEEECSSC-EEEEEECCCCSCSS
T ss_pred             EEcCCChhhCCceEEEEEECCCC-eEEEEEEEEECCCC
Confidence            9999999998 999999999999 57777888777654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=8.5e-13  Score=75.68  Aligned_cols=81  Identities=17%  Similarity=0.232  Sum_probs=64.4

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-C---CCCCCcEEEEeecCc---------ccCCC---cc-----eeeEEEccCCCCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-P---YDSGPYLIAWFKDGR---------QIPGR---TS-----STSLVINPVGRED  115 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~---p~~~~~~~~w~~~~~---------~~~~~---~~-----~~~l~~~~~~~~~  115 (150)
                      +...|....+.+|+.+.|.|.+. .   |   .|.+.|+++..         .+...   ..     ...|.|.++...|
T Consensus        10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p---~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A           10 FIEKPQGGTVKVGEDITFIAKVKAEDLLR---KPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSS---CCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             EEEcCCCeEEeCCCCEEEEEEEeccCCCC---CCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            44556778899999999999986 4   7   89999999631         11100   00     3679999999999


Q ss_pred             CceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        116 RGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       116 ~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      +|.|.|.+.|..| ..+.++.|.|..
T Consensus        87 aG~Y~Cevsn~~g-~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDK-FDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSC-EEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCC-cEEEEEEEEEEe
Confidence            9999999999988 688899999988

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.46  E-value=6.9e-13  Score=73.77  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=62.1

Q ss_pred             ecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         67 HLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        67 ~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      ..+..+.+.|.+. .|   .|.+.|++++..+.....             ...|.|.++..+|.|.|.|.+.|..| ...
T Consensus        14 ~~~~~~~~~c~v~G~P---~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~   89 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNP---KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG-KDE   89 (103)
T ss_dssp             CCCCEEEEEEEEECSS---CCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSC-EEE
T ss_pred             eECcEEEEEEEEEEeC---CCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCC-cEe
Confidence            3567789999999 99   999999999887654432             23499999999999999999999999 688


Q ss_pred             eeEEEEEcCcCc
Q psy11131        133 GSAELQLGGTRN  144 (150)
Q Consensus       133 ~~~~l~v~~~p~  144 (150)
                      .++.|.|.++|-
T Consensus        90 ~~~~l~V~~~P~  101 (103)
T 1wwb_X           90 KQISAHFMGWPG  101 (103)
T ss_dssp             EEEEECCSCCCC
T ss_pred             EEEEEEECCCCC
Confidence            889998887764

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.46  E-value=1.7e-13  Score=87.15  Aligned_cols=116  Identities=18%  Similarity=0.186  Sum_probs=74.8

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc-------------ceeEEEEEEEec----CceEEeCCCcEEE
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG-------------EATAEVRLQVST----PYRVDVNPPLLSV   66 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~-------------~~~~~~~l~v~~----~~~~~~~~~~~~~   66 (150)
                      .|+.+..      .+|.|.+++.+|+|.|.|.+.+..+             .......|.|..    +|.+...+....+
T Consensus        73 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~  152 (239)
T 3tv3_H           73 SRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKS  152 (239)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC
T ss_pred             CCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhh
Confidence            5666643      3599999999999999999875421             112234566652    2333322222234


Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCC---------Ccc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG---------RTS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~---------~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..|+.+.|.|.+.  .|.  ...+.|.+++..+..         ...   .+.|.+......| |.|.|.+.+..+
T Consensus       153 ~~g~~v~l~C~~~~~~p~--~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  225 (239)
T 3tv3_H          153 TSGGTAALGCLVKDYFPE--PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  225 (239)
T ss_dssp             --TTEEEEEEEEEEEBSS--CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             ccCCcEEEEEEEeeEeCC--CeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCC
Confidence            4689999999998  441  346899988753211         111   3567788877778 999999998765

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=3.7e-13  Score=76.60  Aligned_cols=91  Identities=19%  Similarity=0.194  Sum_probs=67.2

Q ss_pred             EEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------------eeeEEEccCCCC
Q psy11131         48 RLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------------STSLVINPVGRE  114 (150)
Q Consensus        48 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------------~~~l~~~~~~~~  114 (150)
                      .|.|..+|.+......   .......|.|.+. .|   .+.+.|++++..+.....            ...|.|.++...
T Consensus         2 ~L~V~~pP~i~~~~~~---~~~~~~~l~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   75 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNP---PPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHY   75 (118)
T ss_dssp             --CCCCCCCCCCCCCC---CCCCEEEEEEEEECSS---CCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGG
T ss_pred             EEEEecCCceeccCCC---eeccceEEEEEeeeeC---CCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChh
Confidence            4566666654333221   1225567889999 99   999999999987765442            347999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      |.|.|.|.+.|..| ....++.+.|...|-.
T Consensus        76 d~G~Y~C~a~N~~G-~~~~~~~l~v~~~P~~  105 (118)
T 1wwc_A           76 NNGNYTLIAKNPLG-TANQTINGHFLKEPFP  105 (118)
T ss_dssp             GCEEEEEEEEETTE-EEEEEEEECCSCCCCC
T ss_pred             cCEEEEEEEECCCC-eEeeEEEEEEccCCCc
Confidence            99999999999999 6788888888776644

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.45  E-value=9.8e-13  Score=72.02  Aligned_cols=79  Identities=20%  Similarity=0.397  Sum_probs=63.2

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCc
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDV  130 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~  130 (150)
                      .+...+....+.+|+.+.|.|.+. .|    +.+.|++++..+....+    ...|.|.++...|.|.|.|.+.|..| .
T Consensus        11 ~~~~~~~~~~v~~G~~v~l~C~~~g~p----p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~   85 (95)
T 2ckn_A           11 GVPVEVESLLVHPGDLLQLRCRLRDDV----QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSG-S   85 (95)
T ss_dssp             CBTTBBCCEEECTTSCEEEECCEESSC----CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTE-E
T ss_pred             EEEcCcceEEEcCCCeEEEEEECCCCC----CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCC-c
Confidence            344445667889999999999998 54    58999999887754433    46899999999999999999999988 5


Q ss_pred             eeeeEEEEE
Q psy11131        131 AQGSAELQL  139 (150)
Q Consensus       131 ~~~~~~l~v  139 (150)
                      ....+.|.|
T Consensus        86 ~~~~~~l~V   94 (95)
T 2ckn_A           86 DTTYFSVNV   94 (95)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            667777665

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.45  E-value=1.7e-12  Score=72.74  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=62.7

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCC---cEEEEeecCcccCC---Cc--------------ceeeEEEccCCCC
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGP---YLIAWFKDGRQIPG---RT--------------SSTSLVINPVGRE  114 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~---~~~~w~~~~~~~~~---~~--------------~~~~l~~~~~~~~  114 (150)
                      .+...|....+.+|+.+.|.|.+. .|   .   +.+.|++++.....   ..              ....|.|.++...
T Consensus         6 ~f~~~p~~~~v~~G~~v~L~C~~~g~p---~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            6 LFVMRPQDGEVTVGGSITFSARVAGAS---LLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             SCSBCCCCEEEETTCCEEEEEEEECC----CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             EEEeCCCcEEEeCCCCEEEEEEECCCc---cCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            444566778899999999999998 87   6   99999986521100   00              0357999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      |+|.|.|.+.|..| ..+..+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G-~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDK-FDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSC-EEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCC-ceEEEEEEEEe
Confidence            99999999999999 67788888775

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.45  E-value=8.4e-13  Score=75.64  Aligned_cols=74  Identities=14%  Similarity=0.088  Sum_probs=62.4

Q ss_pred             cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------------eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      .+..+.|.|.+. .|   .|.+.|+++|..+.....               ...|.|..+...|.|.|+|.|.|..| ..
T Consensus        14 ~~~~~~l~c~v~G~P---~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G-~~   89 (126)
T 1he7_A           14 EMHHWCIPFSVDGQP---APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG-QA   89 (126)
T ss_dssp             CCCEEEEEEEECCSS---CCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE-EE
T ss_pred             cCccEEEEEEEeeeC---CCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCC-eE
Confidence            567789999999 99   999999999988764322               25799999999999999999999999 68


Q ss_pred             eeeEEEEEcCcCcc
Q psy11131        132 QGSAELQLGGTRNI  145 (150)
Q Consensus       132 ~~~~~l~v~~~p~~  145 (150)
                      ..++.+.|.+.|-.
T Consensus        90 ~~t~~l~v~~~P~~  103 (126)
T 1he7_A           90 SASIMAAFMDNPFE  103 (126)
T ss_dssp             EEEEEECCCSCTTS
T ss_pred             EEEEEEEEEcCCCC
Confidence            88888888877644

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.45  E-value=8.2e-13  Score=72.90  Aligned_cols=74  Identities=22%  Similarity=0.441  Sum_probs=61.0

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      ....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++..+|.|.|.|.+.|..| ..
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g-~~   91 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNP---MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SI   91 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEES---CCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE-EE
T ss_pred             cEEEecCCCEEEEEEEccccC---CCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCC-EE
Confidence            356788999999999999 88   899999999876653321         34799999999999999999999998 56


Q ss_pred             eeeEEEEE
Q psy11131        132 QGSAELQL  139 (150)
Q Consensus       132 ~~~~~l~v  139 (150)
                      ...+.|.|
T Consensus        92 ~~~~~l~V   99 (100)
T 3caf_A           92 NHTYHLDV   99 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            67777765

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.45  E-value=1.7e-14  Score=90.56  Aligned_cols=109  Identities=15%  Similarity=0.221  Sum_probs=70.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE----EEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCc-EEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL----QVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPY-LIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~-~~~   89 (150)
                      +.|.|.++..+|+|.|+|.+.+..+.......+    .+..+|.+...+.......|+.+.|.|.+.  .|   .+ .+.
T Consensus        76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P---~~~~v~  152 (218)
T 2rgs_A           76 STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNP---GDISVE  152 (218)
T ss_dssp             EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBS---SCCEEE
T ss_pred             EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeC---CCcEEE
Confidence            579999999999999999999875543122222    233455544333221113588999999998  45   54 999


Q ss_pred             EeecCcccCCCc-------c------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         90 WFKDGRQIPGRT-------S------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        90 w~~~~~~~~~~~-------~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |++++..+....       .      ...|.+......|.|.|.|.+.|...
T Consensus       153 W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          153 WTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             EEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             EEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence            999987653211       0      12233433333458999999999765

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.44  E-value=3e-12  Score=70.39  Aligned_cols=76  Identities=22%  Similarity=0.339  Sum_probs=61.0

Q ss_pred             CCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131         61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSA  135 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~  135 (150)
                      +....+.+|+.+.|.|.+.  .|   .+.+.|++++........   ...|.|.++..+|.|.|.|.+.|..| .....+
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g-~~~~~~   92 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSP---AYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA-MDQGTA   92 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSS---CCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSC-EEEEEE
T ss_pred             CCCeEEecCCCEEEEEeCCCCCC---CcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCC-ccccEE
Confidence            4556788999999999997  67   889999987543322221   56899999999999999999999998 577777


Q ss_pred             EEEEc
Q psy11131        136 ELQLG  140 (150)
Q Consensus       136 ~l~v~  140 (150)
                      .|.|.
T Consensus        93 ~l~V~   97 (98)
T 1gl4_B           93 TLHVQ   97 (98)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77775

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.3e-13  Score=74.67  Aligned_cols=82  Identities=26%  Similarity=0.491  Sum_probs=65.0

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCC-Cceee
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG-DVAQG  133 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g-~~~~~  133 (150)
                      .+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.... ...|.|.++..+|.|.|.|.+.|..+ ...+.
T Consensus        12 ~i~~~p~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~   87 (96)
T 2ens_A           12 QLVVEPEGGAVAPGGTVTLTCEVPAQP---SPQIHWMKDGVPLPLPP-SPVLILPEIGPQDQGTYSCVATHSSHGPQESR   87 (96)
T ss_dssp             CCEEESTTSEECTTCEEEEECCCSSCS---SCCCCCEESSSBCSSCC-CSEEEEESCCTTTCEEEECEECCSSCCCEECC
T ss_pred             EEEECCCCCEEcCCCeEEEEEEEccCC---CCEEEEEECCEECcCCC-CCEEEECCCCcccCEEEEEEEEeCCCCcEEEE
Confidence            344455556788999999999999 88   88999999988775443 57899999999999999999999644 34566


Q ss_pred             eEEEEEcC
Q psy11131        134 SAELQLGG  141 (150)
Q Consensus       134 ~~~l~v~~  141 (150)
                      .+.+.|.+
T Consensus        88 ~~~v~V~~   95 (96)
T 2ens_A           88 AVSISIIE   95 (96)
T ss_dssp             CEEEEECC
T ss_pred             EEEEEEeC
Confidence            67777654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.44  E-value=2.2e-12  Score=70.44  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +.+...+....+.+|+.+.|.|.+..+   .+.+.|++++..+....+        ...|.|.++..+|.|.|.|.+.| 
T Consensus         6 ~~~~~~~~~~~v~~G~~v~l~C~v~~~---~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n-   81 (93)
T 1waa_A            6 IEVEKPLYGVEVFVGETAHFEIELSEP---DVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN-   81 (93)
T ss_dssp             CCEEECCCCEEEETTSCEEEEEEESSS---SCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT-
T ss_pred             cEeeccCcceEEeCCCCEEEEEEECCC---CCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC-
Confidence            445556677889999999999999844   567999999988765443        24799999999999999999875 


Q ss_pred             CCCceeeeEEEEEcC
Q psy11131        127 DGDVAQGSAELQLGG  141 (150)
Q Consensus       127 ~g~~~~~~~~l~v~~  141 (150)
                          ...++.|.|.+
T Consensus        82 ----~~~sa~L~V~~   92 (93)
T 1waa_A           82 ----TKSAANLKVKE   92 (93)
T ss_dssp             ----EEEEEEEEEEC
T ss_pred             ----CcEEEEEEEEc
Confidence                34566666654

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.43  E-value=1.4e-12  Score=90.45  Aligned_cols=110  Identities=13%  Similarity=0.268  Sum_probs=78.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE---ecCceEEeCCCc-EEEecCCcEEEEEEec-C-CCCCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV---STPYRVDVNPPL-LSVHLDGSANFQCEIT-P-YDSGPYLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v---~~~~~~~~~~~~-~~~~~g~~~~l~C~~~-~-p~~~~~~~~w   90 (150)
                      +.|.|.++..+|.|.|+|.+.|..+.......|.+   ..+|.+...+.. ..+.+|+.+.|.|.+. . |.  .+.+.|
T Consensus       309 ~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~--~~~v~W  386 (475)
T 1iga_A          309 SVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPK--DVLVRW  386 (475)
T ss_pred             EEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECC--CCEEEE
Confidence            57999999999999999999998776544445532   455555443332 2356788999999998 4 31  359999


Q ss_pred             eecCcccCCCc------------c------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         91 FKDGRQIPGRT------------S------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        91 ~~~~~~~~~~~------------~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ++++..+....            .      .+.|.+.....+|.|.|.|.|.|...
T Consensus       387 ~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l  442 (475)
T 1iga_A          387 LQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  442 (475)
T ss_pred             EECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCC
Confidence            99987654321            1      23456666666788999999998764

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.43  E-value=1e-12  Score=73.33  Aligned_cols=85  Identities=18%  Similarity=0.210  Sum_probs=64.9

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc-ccC-------CCcc---------eeeEEEccCCCCC
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR-QIP-------GRTS---------STSLVINPVGRED  115 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~-~~~-------~~~~---------~~~l~~~~~~~~~  115 (150)
                      .|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++. .+.       ...+         ...|.|.++..+|
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRVDQND---NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSD   82 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEESSCS---SCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGG
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEEcCCC---ccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhH
Confidence            34444556678899999999999999 88   88999988654 110       0001         4579999999999


Q ss_pred             CceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        116 RGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       116 ~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      .|.|.|.+.| .+ ..+..+.|.|.++|
T Consensus        83 ~G~Y~C~~~n-~~-~~~~~~~L~V~~~P  108 (108)
T 3m45_A           83 EGQYTCSLFT-MP-VKTSKAYLTVLGVP  108 (108)
T ss_dssp             CEEEEEEECS-SS-CEEEEEEEEEECCC
T ss_pred             CeEEEEEEEc-CC-CcEEEEEEEEEcCC
Confidence            9999999999 66 67888889888765

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.4e-12  Score=72.38  Aligned_cols=85  Identities=20%  Similarity=0.293  Sum_probs=67.2

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      ++.+...+....+.+|+.+.|.|.+..|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~---~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSRA---GTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESSS---SCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeCC---CCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            3445556667888999999999998855   677999999887754433        34699999999999999999987


Q ss_pred             CCCCceeeeEEEEEcCcCccc
Q psy11131        126 SDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       126 ~~g~~~~~~~~l~v~~~p~~~  146 (150)
                           ....+.|.|..+|..+
T Consensus        85 -----~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           85 -----SKSTASLHVEEKASGP  100 (103)
T ss_dssp             -----CEEEEEEEECCCSSSS
T ss_pred             -----CCcEEEEEEeCCCCCC
Confidence                 3677888888877654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.43  E-value=8.4e-13  Score=70.70  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=57.6

Q ss_pred             cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      .+.+.+|+.+.|.|.+..|   .|.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.     ..+.+
T Consensus         5 ~v~~~~G~~v~l~C~vs~p---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-----n~~~~   76 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSGP---GGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAP-----QDSRI   76 (84)
T ss_dssp             CEEECTTSCEEEECCCSCC---STTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECT-----TTCEE
T ss_pred             EEEEecCCCEEEEEEECCC---CcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEEC-----CEEEE
Confidence            4667899999999987766   678999999998865543        3579999999999999999863     34566


Q ss_pred             EEEEEcCc
Q psy11131        135 AELQLGGT  142 (150)
Q Consensus       135 ~~l~v~~~  142 (150)
                      +.|.|..|
T Consensus        77 a~l~V~eP   84 (84)
T 2lu7_A           77 FLVSVEEP   84 (84)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            77777654

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.43  E-value=2.5e-12  Score=82.52  Aligned_cols=126  Identities=15%  Similarity=0.212  Sum_probs=77.7

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc-----------ceeEEEEEEEec----CceEEeCCCcEEEe
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG-----------EATAEVRLQVST----PYRVDVNPPLLSVH   67 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~-----------~~~~~~~l~v~~----~~~~~~~~~~~~~~   67 (150)
                      .+|+.+..      .+|.|.+++.+|+|.|.|.+.+..+           .....+.|.|..    +|.+...+....+.
T Consensus        88 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~  167 (256)
T 3sob_H           88 KGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKST  167 (256)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC----
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccc
Confidence            35777653      2499999999999999999876421           122334677752    23333222223456


Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCC-----------cc---eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR-----------TS---STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~-----------~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      +|+.+.|.|.+.  .|.  ...+.|  ++..+...           ..   .+.|.+.....+| |.|+|.+.+..+ ..
T Consensus       168 ~g~~v~L~C~~~~~~p~--~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~-~~  241 (256)
T 3sob_H          168 SGGTAALGCLVKDYFPE--PVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS-NT  241 (256)
T ss_dssp             -TTEEEEEEEEEEEBSS--CCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGG-TE
T ss_pred             cCCcEEEEEEEEEEECC--CeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCC-Cc
Confidence            799999999998  441  457899  43332210           00   3468888888888 999999998776 34


Q ss_pred             eeeEEEEEc
Q psy11131        132 QGSAELQLG  140 (150)
Q Consensus       132 ~~~~~l~v~  140 (150)
                      .....+.+.
T Consensus       242 ~~~~~~~~~  250 (256)
T 3sob_H          242 KVDKKVEPK  250 (256)
T ss_dssp             EEEEECCCC
T ss_pred             ceEEEeccc
Confidence            444444443

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.43  E-value=6.4e-13  Score=84.03  Aligned_cols=115  Identities=18%  Similarity=0.258  Sum_probs=75.7

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccC--Cc--ceeEEEEEEEec---------CceE-EeCCCcEEEec
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNI--GG--EATAEVRLQVST---------PYRV-DVNPPLLSVHL   68 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~--~~--~~~~~~~l~v~~---------~~~~-~~~~~~~~~~~   68 (150)
                      +.|+.+..      .+|.|.+++.+|+|.|.|.+.+.  ..  .....+.|.|..         +|.. ...+....+..
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~  144 (230)
T 1ypz_F           65 YKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNL  144 (230)
T ss_dssp             SSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHH
T ss_pred             CCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhcc
Confidence            46777653      37999999999999999999874  11  112335777762         1221 11122222345


Q ss_pred             CCcEEEEEEec--CCCCCC-cEEEEee-cCcccCCCc---------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         69 DGSANFQCEIT--PYDSGP-YLIAWFK-DGRQIPGRT---------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~-~~~~w~~-~~~~~~~~~---------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |+.+.|.|.+.  .|   . +.+.|.+ ++..+....         .   .+.|.+..... + |.|.|.+.+..+
T Consensus       145 g~~~~L~C~~~g~~P---~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~  215 (230)
T 1ypz_F          145 HKTGTYLCLLEAFFP---DVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENN  215 (230)
T ss_dssp             HSCEEEEEEEEEESS---CCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSC
T ss_pred             CCcceEEEEEeeecC---CCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCC
Confidence            88899999998  46   4 6999999 766553211         0   24577776654 3 899999998765

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.43  E-value=1.5e-12  Score=73.93  Aligned_cols=88  Identities=27%  Similarity=0.468  Sum_probs=65.7

Q ss_pred             cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-----c-----eeeEEEc-----cCCCCCC
Q psy11131         53 TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-----S-----STSLVIN-----PVGREDR  116 (150)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-----~-----~~~l~~~-----~~~~~~~  116 (150)
                      .+|.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+....     .     ...+.+.     ++..+|.
T Consensus         8 ~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~   84 (117)
T 2v9t_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRP---TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE   84 (117)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEES---CCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSC
T ss_pred             CCCeeEcCCCCEEEcCCCcEEEEEECCccC---CCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcC
Confidence            456666667778899999999999999 89   89999999987765331     0     2223333     4478999


Q ss_pred             ceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        117 GIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       117 g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      |.|.|.+.|..|......+.+.+..+.
T Consensus        85 G~Y~C~a~N~~G~~~s~~~~l~~~~~~  111 (117)
T 2v9t_A           85 GVYVCVARNYLGEAVSHDASLEVAAAA  111 (117)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEC---
T ss_pred             EEEEEEEEeCccceEeeeEEEEhhhhh
Confidence            999999999999666777888876654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.43  E-value=4.9e-13  Score=85.62  Aligned_cols=114  Identities=18%  Similarity=0.243  Sum_probs=74.1

Q ss_pred             ceEEeCCe---EEEcCCCCCCCeEEEEEeccCCc------ceeEEEEEEEec------CceEEe-CCCcEEEecCCcEEE
Q psy11131         11 RTRVLGPI---LAIEGVTAEDSGTYRCSSSNIGG------EATAEVRLQVST------PYRVDV-NPPLLSVHLDGSANF   74 (150)
Q Consensus        11 ~~~~~~~~---l~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~------~~~~~~-~~~~~~~~~g~~~~l   74 (150)
                      |+.+....   |.|.+++.+|+|.|+|.+.+..+      .....+.|.|..      +|.+.. .+....+..|+.+.|
T Consensus        65 R~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L  144 (253)
T 3to4_D           65 DYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATL  144 (253)
T ss_dssp             EEEEECCSSSCCEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEE
T ss_pred             cEEEEeCCCCeEEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEE
Confidence            66665522   99999999999999999986532      122334667763      222221 111111224688999


Q ss_pred             EEEec--CCCCCCc-EEEEeecCcccCCC---------------cc----eeeEEEccCCCCC-CceEEEEEEeCC
Q psy11131         75 QCEIT--PYDSGPY-LIAWFKDGRQIPGR---------------TS----STSLVINPVGRED-RGIYQCIARRSD  127 (150)
Q Consensus        75 ~C~~~--~p~~~~~-~~~w~~~~~~~~~~---------------~~----~~~l~~~~~~~~~-~g~y~C~~~~~~  127 (150)
                      .|.+.  .|   .+ .+.|++++..+...               ..    .+.|.+.....+| .|.|+|.+.+..
T Consensus       145 ~C~~~g~~P---~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          145 VCLATGFYP---DHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEEEEEEBS---SCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EEEEceEEC---CcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            99998  55   55 89999988765431               11    2456666665556 679999999864

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=73.57  Aligned_cols=76  Identities=20%  Similarity=0.248  Sum_probs=61.4

Q ss_pred             EEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131         64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSA  135 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~  135 (150)
                      ..+.+|+.+.|.|.+..|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|     .+..+
T Consensus        23 ~~~~~G~~v~L~C~~~~p---~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~~~~~   94 (113)
T 2cpc_A           23 VAAVRLERVVLTCELCRP---WAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASF   94 (113)
T ss_dssp             EEEETTCCEEEEEEESCT---TCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS-----CEEEE
T ss_pred             EEEEcCCeEEEEEEecCC---CCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec-----CcEEE
Confidence            567899999999998766   788999999887654332        25899999999999999999886     45677


Q ss_pred             EEEEcCcCcccc
Q psy11131        136 ELQLGGTRNIKH  147 (150)
Q Consensus       136 ~l~v~~~p~~~~  147 (150)
                      .|.|..+|..+.
T Consensus        95 ~l~V~~~p~~~~  106 (113)
T 2cpc_A           95 TVTVTEPPVRII  106 (113)
T ss_dssp             EEEEECCCCCCC
T ss_pred             EEEEecCCchhc
Confidence            888888876544

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.42  E-value=1.3e-12  Score=83.62  Aligned_cols=117  Identities=20%  Similarity=0.280  Sum_probs=76.3

Q ss_pred             CCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCC---cceeEEEEEEEec------CceEEe-CCCcEEEecCCcEE
Q psy11131          9 GPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIG---GEATAEVRLQVST------PYRVDV-NPPLLSVHLDGSAN   73 (150)
Q Consensus         9 ~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~------~~~~~~-~~~~~~~~~g~~~~   73 (150)
                      ..|+.+..     .+|.|.+++.+|+|.|.|.+.+..   ........|.|..      +|.+.. .+....+.+|+.+.
T Consensus        63 ~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~  142 (252)
T 1oga_E           63 AEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKAT  142 (252)
T ss_dssp             CTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CCcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceE
Confidence            36777653     589999999999999999998751   1112234577764      333332 22222233688999


Q ss_pred             EEEEec--CCCCCC-cEEEEeecCcccCCC---------------cc----eeeEEEccCCCC-CCceEEEEEEeCCC
Q psy11131         74 FQCEIT--PYDSGP-YLIAWFKDGRQIPGR---------------TS----STSLVINPVGRE-DRGIYQCIARRSDG  128 (150)
Q Consensus        74 l~C~~~--~p~~~~-~~~~w~~~~~~~~~~---------------~~----~~~l~~~~~~~~-~~g~y~C~~~~~~g  128 (150)
                      |.|.+.  .|   . +.+.|++++..+...               ..    .+.|.+...... +.+.|+|.+.+...
T Consensus       143 L~C~~~g~~P---~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  217 (252)
T 1oga_E          143 LVCLATGFYP---DHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  217 (252)
T ss_dssp             EEEEEEEEBS---SCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             EEEEEeeEcC---CCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            999998  46   4 599999988765321               10    233666554433 56789999999765

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.42  E-value=8.6e-13  Score=83.77  Aligned_cols=117  Identities=20%  Similarity=0.296  Sum_probs=75.1

Q ss_pred             CCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCc---c--eeEEEEEEEec------CceEEe-CCCcEEEecCCc
Q psy11131          9 GPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGG---E--ATAEVRLQVST------PYRVDV-NPPLLSVHLDGS   71 (150)
Q Consensus         9 ~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~---~--~~~~~~l~v~~------~~~~~~-~~~~~~~~~g~~   71 (150)
                      ..|+.+..     .+|.|.+++.+|+|.|.|.+.+..+   .  ......|.|..      +|.+.. .+....+..|+.
T Consensus        59 ~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~  138 (238)
T 1bec_A           59 PDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQK  138 (238)
T ss_dssp             CTTCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCS
T ss_pred             cceEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCc
Confidence            46776642     4799999999999999999987631   1  12234677765      333332 232223457899


Q ss_pred             EEEEEEec-C-CCCCC-cEEEEeecCcccCCCcc---------------eeeEEEccCCCCC-CceEEEEEEeCCC
Q psy11131         72 ANFQCEIT-P-YDSGP-YLIAWFKDGRQIPGRTS---------------STSLVINPVGRED-RGIYQCIARRSDG  128 (150)
Q Consensus        72 ~~l~C~~~-~-p~~~~-~~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~-~g~y~C~~~~~~g  128 (150)
                      +.|.|.+. . |   . +.+.|++++..+.....               .+.|.+......| .|.|.|.+.+...
T Consensus       139 ~~L~C~~~g~~P---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          139 ATLVCLARGFFP---DHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             CSEEEEEEEEBS---CCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             eEEEEEEeeEeC---CCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            99999998 4 6   4 49999998876543210               1123333322223 5679999999754

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.42  E-value=6.7e-12  Score=69.27  Aligned_cols=83  Identities=23%  Similarity=0.276  Sum_probs=64.7

Q ss_pred             CceEEeCCCc-EEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPL-LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~-~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +|.+...+.. ..+.+|+.+.|.|.+..|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+ 
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~p---~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELADP---KLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA-   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEESCT---TSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE-
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEecCC---CceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE-
Confidence            3444444444 577899999999998766   789999999887754433        346999999999999999998 


Q ss_pred             eCCCCceeeeEEEEEcCcCc
Q psy11131        125 RSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p~  144 (150)
                         | .....+.|.|.++|.
T Consensus        83 ---g-~~~~~~~l~V~~~P~   98 (100)
T 2yuv_A           83 ---G-DEKCSTELFVRSGPS   98 (100)
T ss_dssp             ---T-TEEEEEEEEECCSCC
T ss_pred             ---C-CceEEEEEEEecCCC
Confidence               4 467788899988763

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-12  Score=72.30  Aligned_cols=78  Identities=17%  Similarity=0.372  Sum_probs=62.9

Q ss_pred             EEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ..+.+|+.+.|.|.+..+   ++.+.|++++..+.....    ...|.|.++...|.|.|.|.+.|..| .....+.|.|
T Consensus        13 ~~v~~G~~v~L~C~~~g~---pp~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g-~~~~~~~l~V   88 (99)
T 2cr3_A           13 FLVHPGDLLQLRCRLRDD---VQSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSG-SDTTYFSVNV   88 (99)
T ss_dssp             CCBCTTSCEEEECCCCSS---CCEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTE-EEEEEEEECB
T ss_pred             eEEeCCCcEEEEEEecCC---CCeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCc-eEEEEEEEEE
Confidence            446789999999988733   359999999877754433    45899999999999999999999998 5777888888


Q ss_pred             cCcCcc
Q psy11131        140 GGTRNI  145 (150)
Q Consensus       140 ~~~p~~  145 (150)
                      .+.|+.
T Consensus        89 ~~~~~s   94 (99)
T 2cr3_A           89 SDALPS   94 (99)
T ss_dssp             CSCCSC
T ss_pred             ecCCCC
Confidence            876654

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.41  E-value=6.9e-12  Score=70.22  Aligned_cols=87  Identities=24%  Similarity=0.407  Sum_probs=67.5

Q ss_pred             ecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------------eeeEEEccCCCC
Q psy11131         52 STPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------------STSLVINPVGRE  114 (150)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------------~~~l~~~~~~~~  114 (150)
                      ..+|.+...+....+.+|+.+.|.|.+. .|.. .+.+.|++++..+.....                ...|.|.++..+
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   86 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDS-PMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT   86 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCC-CCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCC-CEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccc
Confidence            3456666677778899999999999987 4411 589999999877654321                268999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEE
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |.|.|.|.+.|..|...+..+.|.|
T Consensus        87 D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           87 SEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999998843557777766

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.6e-12  Score=72.29  Aligned_cols=83  Identities=14%  Similarity=0.269  Sum_probs=63.1

Q ss_pred             CceEEeCCCc---EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEE
Q psy11131         54 PYRVDVNPPL---LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQC  121 (150)
Q Consensus        54 ~~~~~~~~~~---~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C  121 (150)
                      +|.+...+..   ..+.+|+.+.|.|.+. .|   .+ +.|++++..+.....        ...|.|.++..+|.|.|.|
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p---~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   82 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVD---FP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFEC   82 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTT---CC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCC---Cc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEE
Confidence            3444444444   6789999999999998 77   77 999999887754432        3579999999999999999


Q ss_pred             EEEeCCCCceeeeEEEEEcCcCcc
Q psy11131        122 IARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       122 ~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .+.|..     ..+.|.|.++|..
T Consensus        83 ~a~n~~-----~~~~l~V~~~P~p  101 (104)
T 2e6p_A           83 RTEGVS-----AFFGVTVQDPSGP  101 (104)
T ss_dssp             ECSSCC-----CCEEEEEECCCCS
T ss_pred             EECCce-----EEEEEEEcCCCCC
Confidence            998753     3567777776643

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.40  E-value=6.4e-12  Score=78.45  Aligned_cols=131  Identities=15%  Similarity=0.112  Sum_probs=86.4

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCC
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSG   84 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~   84 (150)
                      .++.+..    +.|.|.++..+|+|.|.|.+.|..|.....+.|.|..+|......  .....+..+.+.|... .....
T Consensus        65 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~--~~~~~~~~~~l~w~~p~~~~~~  142 (215)
T 3mtr_A           65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID--QVEPYSSTAQVQFDEPEATGGV  142 (215)
T ss_dssp             CSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEE--EEEEETTEEEEEEECCSCCCSS
T ss_pred             ccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcce--EEEEecceEEEEEecCCccCCC
Confidence            4555542    689999999999999999999999988888889888654321111  1123456688888743 21110


Q ss_pred             -Cc--EEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         85 -PY--LIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        85 -~~--~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                       ..  .+.|..++........        ...+.+.++...+.|.|.|.+.|..|. ...+..+.+..+|
T Consensus       143 pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~-s~~S~~~~v~T~p  211 (215)
T 3mtr_A          143 PILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGL-GEISAASEFKTQP  211 (215)
T ss_dssp             CEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCB-CCCCCCEEEECCC
T ss_pred             ceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcc-cCcccceeeEecc
Confidence             22  3667665543111100        267999999999999999999999983 4334444454444

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.40  E-value=1e-13  Score=91.72  Aligned_cols=109  Identities=13%  Similarity=0.232  Sum_probs=74.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe---cCceE-EeCCCcEEEecCCcEEEEEEec--CCCCCCc---E
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---TPYRV-DVNPPLLSVHLDGSANFQCEIT--PYDSGPY---L   87 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~---~~~~~-~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~---~   87 (150)
                      ..|.|.+....|.|.|+|.+.+..+.....+.+.+.   ..+.+ ...+....+.+|+.+.|.|.+.  .|   .+   .
T Consensus        72 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P---~p~~~~  148 (323)
T 2wqr_A           72 SELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAP---SKGTVQ  148 (323)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECC---CSSCCE
T ss_pred             EEEEEcHHHcCCCCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCC---CCCceE
Confidence            467788877889999999999876544333222111   12223 3334444467899999999987  45   55   9


Q ss_pred             EEEeecC-cccCCCc---------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         88 IAWFKDG-RQIPGRT---------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        88 ~~w~~~~-~~~~~~~---------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +.|++++ ..+....         .   ...|.|.++..+|.|.|.|.+.|..+
T Consensus       149 i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~  202 (323)
T 2wqr_A          149 LTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL  202 (323)
T ss_dssp             EEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCC
Confidence            9999864 3332110         0   34689999999999999999998764

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.39  E-value=3.8e-12  Score=70.61  Aligned_cols=83  Identities=20%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      |.+...+....+.+|+.+.|.|.+. .|   .+ +.|++++..+.....        ...|.|.++..+|.|.|.|.   
T Consensus         9 p~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2e7b_A            9 VRFQEALKDLEVLEGGAATLRCVLSSVA---AP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS---   81 (103)
T ss_dssp             CCCTBCCCCEEEESSSCEEEEEECSSCC---CS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE---
T ss_pred             CEEEecCccEEEECCCcEEEEEEEeCCC---CC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE---
Confidence            3444456678899999999999998 77   77 999999887754432        34699999999999999998   


Q ss_pred             CCCCceeeeEEEEEcCcCccc
Q psy11131        126 SDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       126 ~~g~~~~~~~~l~v~~~p~~~  146 (150)
                       .| .....+.|.|.++|..+
T Consensus        82 -~g-~~~~~~~l~V~~~p~~~  100 (103)
T 2e7b_A           82 -FG-DQTTSATLTVTALPSGP  100 (103)
T ss_dssp             -CS-SCBCCBCEEEECCCCCS
T ss_pred             -EC-CcEEEEEEEEEeccccc
Confidence             44 45677888888877654

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.38  E-value=3.8e-12  Score=70.64  Aligned_cols=81  Identities=20%  Similarity=0.306  Sum_probs=64.3

Q ss_pred             EEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCc--c--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT--S--------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~--~--------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +...+....+.+|+.+.|.|.+..|   .+.+.|++++..+....  +        ...|.|.++..+|.|.|.|.+.| 
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~~---~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n-   85 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSED---DANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG-   85 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSSS---SCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT-
T ss_pred             eeccCCCEEEECCCCEEEEEEecCC---CCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC-
Confidence            4445666788999999999998765   68899999998776544  1        25799999999999999999875 


Q ss_pred             CCCceeeeEEEEEcCcCcc
Q psy11131        127 DGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       127 ~g~~~~~~~~l~v~~~p~~  145 (150)
                          .+..+.|.|..+|..
T Consensus        86 ----~~~~~~l~V~~~p~p  100 (103)
T 1x44_A           86 ----GQSSAKLSVDLKSGP  100 (103)
T ss_dssp             ----EEEEEEEEEECCCSC
T ss_pred             ----CcEEEEEEEeCCCCC
Confidence                466778888776654

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-12  Score=74.15  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=64.5

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-C---CCCCCcEEEEeecCc-ccCCC--cc--------------eeeEEEccCCCCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-P---YDSGPYLIAWFKDGR-QIPGR--TS--------------STSLVINPVGRED  115 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~---p~~~~~~~~w~~~~~-~~~~~--~~--------------~~~l~~~~~~~~~  115 (150)
                      +...|....+.+|+.+.|.|.+. .   |   .|.+.|+++.. .+...  ..              ...|.|.++...|
T Consensus        15 f~~~P~~v~V~eG~~v~L~C~v~g~~~~p---~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           15 FLKKPDSVSVETGKDAVVVAKVNGKELPD---KPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             CSBCCCCCEEETTSCEECCEEEETTTSSS---CCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             EEECCCCeEEeCCCCEEEEEEEeccCCCC---CCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            34456778899999999999997 4   6   89999998631 11100  00              3679999999999


Q ss_pred             CceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        116 RGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       116 ~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      .|.|.|.+.|..| ..+..+.|.|..+
T Consensus        92 ~G~Y~Cevsn~~g-~~s~~~~L~V~~~  117 (118)
T 2edn_A           92 RGYYRLEVKAKDT-CDSCGFNIDVEAP  117 (118)
T ss_dssp             CSCEEEEEECSSC-EEEEEECCEEECC
T ss_pred             CEEEEEEEEEcCC-cEEEEEEEEEEcC
Confidence            9999999999999 6888999988774

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=3e-12  Score=71.28  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=64.2

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .+...+....+.+|+.+.|.|.+. .|.  .+.+.|++++..+....+        ...|.|.++..+|+|.|.|.+.  
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~--~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~--   85 (104)
T 2eny_A           10 GITKRLKTMEVLEGESCSFECVLSHESA--SDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR--   85 (104)
T ss_dssp             CCSBCCCCEEEESSCCEEEEEECSSCCC--SSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET--
T ss_pred             EEEecCCCcEEcCCCcEEEEEEEcCCCC--CceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC--
Confidence            344456678899999999999998 551  347999999987754433        3479999999999999999874  


Q ss_pred             CCCceeeeEEEEEcCcCcc
Q psy11131        127 DGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       127 ~g~~~~~~~~l~v~~~p~~  145 (150)
                         ....++.|.|.++|..
T Consensus        86 ---~~~~~a~L~V~~~p~~  101 (104)
T 2eny_A           86 ---GLTSKASLIVRERSGP  101 (104)
T ss_dssp             ---TEEEEECEEEECCCSS
T ss_pred             ---CeeEEEEEEEeCCCcC
Confidence               3567888888887754

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.37  E-value=8.2e-12  Score=84.31  Aligned_cols=109  Identities=18%  Similarity=0.258  Sum_probs=75.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEE-EecCC-cEEEEEEec--CCCCCC--cEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS-VHLDG-SANFQCEIT--PYDSGP--YLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-~~~g~-~~~l~C~~~--~p~~~~--~~~~w   90 (150)
                      .+|.|.+++.+|.|.|.|.+.+..+.....+.|.|..+|.+...+.... ...|+ .+.|.|.+.  .|   .  +.+.|
T Consensus       254 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP---~~~~~VtW  330 (401)
T 3f8u_B          254 GTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYP---SGGLEVEW  330 (401)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBS---STTCEEEE
T ss_pred             EEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcC---CCCcEEEE
Confidence            7899999999999999999988777777778889988877665443332 34575 789999998  56   5  79999


Q ss_pred             e-ecCc---c--cCC-----C-----cc----eeeEEEccCCC-CCCceEEEEEEeCCC
Q psy11131         91 F-KDGR---Q--IPG-----R-----TS----STSLVINPVGR-EDRGIYQCIARRSDG  128 (150)
Q Consensus        91 ~-~~~~---~--~~~-----~-----~~----~~~l~~~~~~~-~~~g~y~C~~~~~~g  128 (150)
                      . +++.   .  ...     .     +.    .+.|.+..... .+.+.|+|.+.+...
T Consensus       331 ~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL  389 (401)
T 3f8u_B          331 ELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL  389 (401)
T ss_dssp             EEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTS
T ss_pred             EecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCC
Confidence            5 6541   1  110     0     00    23444444322 234589999998763

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.37  E-value=1.5e-11  Score=76.79  Aligned_cols=87  Identities=23%  Similarity=0.368  Sum_probs=71.5

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +|.+ ..+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....          ...|.|.++...|.|.|.|.
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p---~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYP---SATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCT   94 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEES---CCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecC---CCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEE
Confidence            3444 456667888999999999999 89   899999999987765421          46799999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcCcCcc
Q psy11131        123 ARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      +.|..| .....+.+.+..+|..
T Consensus        95 a~n~~g-~~~~~~~l~v~~~P~~  116 (215)
T 3mtr_A           95 AVNRIG-QESLEFILVQADTPSS  116 (215)
T ss_dssp             EECSSC-EEEEEEEEEECCCCCC
T ss_pred             EEECCC-ceEEEEEEEECCCCCC
Confidence            999999 5778888888776654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.37  E-value=1.5e-11  Score=75.55  Aligned_cols=87  Identities=22%  Similarity=0.404  Sum_probs=70.7

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....          ...|.|.++..+|.|.|.|.
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHP---KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecC---CCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            45666667778899999999999998 88   899999999877654321          23899999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcCcCc
Q psy11131        123 ARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      +.|..| .....+.|.|..+|.
T Consensus        81 ~~n~~g-~~~~~~~l~V~~~p~  101 (197)
T 2j8h_A           81 ATNQGG-SVSGTASLEVEVPAK  101 (197)
T ss_dssp             EEETTE-EEEEEEEEEEEEEEE
T ss_pred             EEECCC-ceeEEEEEEEcCCCc
Confidence            999887 567778888776543

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.36  E-value=7e-12  Score=69.91  Aligned_cols=69  Identities=26%  Similarity=0.388  Sum_probs=57.1

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ++.+...+....+.+|+.+.|.|.+. .|   .+ +.|++++..+.....        ...|.|.++..+|.|.|.|.+.
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~---~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEK---VT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD   83 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSS---CE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEE
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCC---cc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEc
Confidence            34555666778899999999999998 77   66 999999887754433        2479999999999999999999


Q ss_pred             eC
Q psy11131        125 RS  126 (150)
Q Consensus       125 ~~  126 (150)
                      |.
T Consensus        84 n~   85 (106)
T 2dlt_A           84 GY   85 (106)
T ss_dssp             TS
T ss_pred             cC
Confidence            87

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.36  E-value=7.3e-12  Score=76.77  Aligned_cols=89  Identities=22%  Similarity=0.400  Sum_probs=71.4

Q ss_pred             cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEE
Q psy11131         53 TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      .+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRP---LPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA   82 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEES---CCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCC---CCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence            345666677778899999999999998 88   889999999877654432        237999999999999999999


Q ss_pred             EeCCCCceeeeEEEEEcCcCcc
Q psy11131        124 RRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .+..+ .....+.+.|..+|..
T Consensus        83 ~n~~~-~~~~~~~l~v~~~p~~  103 (197)
T 3lcy_A           83 TNEVG-EVETSSKLLLQATPQF  103 (197)
T ss_dssp             ECSSC-EEEEEEEEEEEEEEEE
T ss_pred             ECCCC-ceeEEEEEEEEcCCCC
Confidence            99888 5667777777665543

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.36  E-value=1.1e-11  Score=70.70  Aligned_cols=83  Identities=14%  Similarity=0.220  Sum_probs=63.8

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC------CCc----------ceeeEEEccCCCCCCceEEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP------GRT----------SSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~------~~~----------~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ....+.+|+.+.|.|.+. .|.. .+.+.|++++..+.      ...          ....|.|.++..+|+|.|.|.+.
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~~-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELNV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTTC-CCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCCeEEEEEEEEcCCCC-cEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            345788999999999998 5511 47899999876432      110          13579999999999999999999


Q ss_pred             eCCCCceeeeEEEEEcCcCccc
Q psy11131        125 RSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      |..| .....+.|.|.++|-+.
T Consensus        95 n~~g-~~~~~~~l~V~~~p~i~  115 (122)
T 3s35_X           95 SGLM-TKKNSTFVRVHEKPFVA  115 (122)
T ss_dssp             CSSC-EEEEEEEEEEEEEECC-
T ss_pred             cCCC-ceEEEEEEEEeccCeEE
Confidence            9999 57788899998877553

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.35  E-value=2.7e-13  Score=86.30  Aligned_cols=109  Identities=13%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE----EEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCC-cEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL----QVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGP-YLIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~-~~~~   89 (150)
                      ..|.|.++..+|.|.|+|.+.+..+.......+    .+..+|.+...+.......|..+.|.|.+.  .|   . ..+.
T Consensus        82 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P---~~~~v~  158 (239)
T 1i1c_A           82 SELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYP---PDIYTE  158 (239)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS---SCCEEE
T ss_pred             EEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeEC---CCeEEE
Confidence            579999999999999999999876653222222    233445544333221123477899999997  45   4 5899


Q ss_pred             EeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         90 WFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        90 w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |++++..+.....             .+.|.+......+.|.|+|.+.|...
T Consensus       159 W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          159 WKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             EEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence            9999876642110             12233333333468999999998765

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.34  E-value=6.9e-11  Score=73.52  Aligned_cols=87  Identities=29%  Similarity=0.513  Sum_probs=71.2

Q ss_pred             cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c---------eeeEEEccCCC-CCCceEE
Q psy11131         53 TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S---------STSLVINPVGR-EDRGIYQ  120 (150)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~---------~~~l~~~~~~~-~~~g~y~  120 (150)
                      .+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.... +         ...|.|.++.. .|.|.|.
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~   81 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDP---PPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE   81 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCC---CCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence            356677778888899999999999999 88   88999999988775221 1         25799999999 9999999


Q ss_pred             EEEEeCCCCceeeeEEEEEcCc
Q psy11131        121 CIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       121 C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      |.+.|..|...+..+.|.|..+
T Consensus        82 C~~~n~~g~~~~~~~~l~V~~~  103 (212)
T 2yd1_A           82 CVAENGVGDAVSADATLTIYEG  103 (212)
T ss_dssp             EEEECSSSCEEEEEEEEEEECT
T ss_pred             EEEEeCCCCeEEeeEEEEEecc
Confidence            9999988843677788888665

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.34  E-value=3e-11  Score=75.19  Aligned_cols=86  Identities=28%  Similarity=0.426  Sum_probs=70.0

Q ss_pred             cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccC-CCCCCceEEE
Q psy11131         53 TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPV-GREDRGIYQC  121 (150)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~-~~~~~g~y~C  121 (150)
                      .+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++ ..+|.|.|.|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   81 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDP---RPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC   81 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCC---CCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence            455666677778899999999999999 88   899999999887754321         356999999 5899999999


Q ss_pred             EEEeCCCCceeeeEEEEEcCc
Q psy11131        122 IARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       122 ~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      .+.|..| .....+.|.|..+
T Consensus        82 ~a~n~~g-~~~~~~~l~V~~~  101 (212)
T 2yd6_A           82 VASNNVG-EISVSTRLTVLRE  101 (212)
T ss_dssp             EEEETTE-EEEEEEEEEEECG
T ss_pred             EEEcCCC-cEEEEEEEEEecc
Confidence            9999988 5677778887654

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.33  E-value=4.8e-11  Score=69.52  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=61.2

Q ss_pred             ecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC----------c-----------ceeeEEEc
Q psy11131         52 STPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR----------T-----------SSTSLVIN  109 (150)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~----------~-----------~~~~l~~~  109 (150)
                      ..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+...          .           ....|.|.
T Consensus        19 ~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P---~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   95 (137)
T 3qr2_A           19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSP---VPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID   95 (137)
T ss_dssp             --CCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEEC
T ss_pred             CCCCeEEcCCCCEEEeCCCCEEEEEEEeeec---CCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEEC
Confidence            3567777788888899999999999999 89   9999999977654321          0           14589999


Q ss_pred             cCCCCCCceEEEEEEeCCCC
Q psy11131        110 PVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~~~g~  129 (150)
                      ++..+|.|.|.|.+.|..|.
T Consensus        96 ~v~~~D~G~Y~C~a~N~~G~  115 (137)
T 3qr2_A           96 TLVEEDTGTYECRASNDPDR  115 (137)
T ss_dssp             SCCGGGCEEEEEEEECCTTS
T ss_pred             CCCcccCEEEEEEEEecCCc
Confidence            99999999999999999884

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.33  E-value=1.7e-11  Score=75.23  Aligned_cols=89  Identities=19%  Similarity=0.311  Sum_probs=71.2

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------------eeeEEEccCCCC
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------------STSLVINPVGRE  114 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------------~~~l~~~~~~~~  114 (150)
                      ++.+...+....+.+|+.+.|.|.+.  .|   .+.+.|++++..+.....                 ...|.|.++...
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p---~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   78 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGE---PPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLS   78 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESS---CCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCST
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCC---CcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEecccc
Confidence            34566677888899999999999997  67   789999999887765421                 257999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      |.|.|.|.+.+..+...+..+.|.|..+|..
T Consensus        79 d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~  109 (195)
T 2c5d_C           79 DTGQYQCLVFLGHQTFVSQPGYVGLEGLPYF  109 (195)
T ss_dssp             TCEEEEEEEEETTEEEECCCEEEEECCSCEE
T ss_pred             CCcEEEEEEEeCCCceecccEEEEEecCCeE
Confidence            9999999999987744455588888877644

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.5e-11  Score=67.24  Aligned_cols=84  Identities=24%  Similarity=0.332  Sum_probs=65.1

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      |.+...+....+.+|+.+.|.|....|   .+.+.|++++..+....+        ...|.|.++..+|.|.|.|.    
T Consensus         9 p~~~~~~~~~~v~~G~~v~l~C~~~~p---~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----   81 (103)
T 2dku_A            9 NCFTEELTNLQVEEKGTAVFTCKTEHP---AATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----   81 (103)
T ss_dssp             CCCSSCCCCEEEETTSEEEEEEECSSC---CSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----
T ss_pred             CEeEecCCcEEEeCCCcEEEEEEeCCC---CCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----
Confidence            444455667889999999999994477   789999999887765433        23799999999999999998    


Q ss_pred             CCCceeeeEEEEEcCcCccc
Q psy11131        127 DGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       127 ~g~~~~~~~~l~v~~~p~~~  146 (150)
                      .| .....+.|.|.+.|...
T Consensus        82 ~g-~~~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           82 IG-QAQSRAQLLVQGRRSGP  100 (103)
T ss_dssp             CS-SCBCCEEEEEECSCCCC
T ss_pred             eC-CceEEEEEEEeCccCCC
Confidence            45 45667888888776554

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.32  E-value=1.1e-11  Score=75.30  Aligned_cols=87  Identities=21%  Similarity=0.303  Sum_probs=68.8

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEE
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      .+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....          ...|.|.++..+|.|.|.|.+.
T Consensus         4 ~~~~~p~~~~v~~G~~v~l~C~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            4 KLMGAPVKLTVSQGQPVKLNCSVEGME---EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             ---CCCEEEEEETTCCEEEEEEEESCS---SCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             EEEeCCcceEEeCCCcEEEEEEEeCCC---CCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            344556667889999999999999 88   889999999887765432          2579999999999999999999


Q ss_pred             eCCCCceeeeEEEEEcCcCcc
Q psy11131        125 RSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      +..+...+..+.|.|..+|..
T Consensus        81 ~~~~~~~~~~~~l~V~~~p~~  101 (182)
T 1rhf_A           81 DGGETEISQPVWLTVEGVPFF  101 (182)
T ss_dssp             SCTTCEECCCEEEEEECSCEE
T ss_pred             cCCCcEEEEEEEEEEecCCeE
Confidence            987744567788888877654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.32  E-value=3.5e-11  Score=73.58  Aligned_cols=87  Identities=18%  Similarity=0.319  Sum_probs=67.9

Q ss_pred             CceEEeCCCcEEEec-CCcEEEEEEec-CCCCCC--cEEEEeecCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         54 PYRVDVNPPLLSVHL-DGSANFQCEIT-PYDSGP--YLIAWFKDGRQIPGRTS---STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~-g~~~~l~C~~~-~p~~~~--~~~~w~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +|.+.. +....+.+ |+.+.|.|.+. .|   .  +.+.|++++..+.....   ...|.|.++..+|.|.|.|.+.|.
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   78 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSS---HTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV   78 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECS---SCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCC---CCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC
Confidence            344444 33344555 99999999998 76   5  89999999887765432   578999999999999999999998


Q ss_pred             CCCceeeeEEEEEcCcCccc
Q psy11131        127 DGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       127 ~g~~~~~~~~l~v~~~p~~~  146 (150)
                       + .....+.|.|..+|.+.
T Consensus        79 -~-~~~~~~~l~V~~~p~~~   96 (190)
T 2wv3_A           79 -S-APKANATIEVKAAPDIT   96 (190)
T ss_dssp             -T-EEEEEEEEEEECCCEEE
T ss_pred             -C-cccccEEEEEecCCccc
Confidence             6 67888888888876543

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.32  E-value=7.3e-12  Score=78.96  Aligned_cols=114  Identities=16%  Similarity=0.213  Sum_probs=72.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc-------c--eeEEEEEEEec----CceEEeCCCcEEEecCC
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG-------E--ATAEVRLQVST----PYRVDVNPPLLSVHLDG   70 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~-------~--~~~~~~l~v~~----~~~~~~~~~~~~~~~g~   70 (150)
                      +|+.+..      .+|.|.+++.+|+|.|.|.+.+..+       .  -...+.|.|..    +|.+...+.......|.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~  145 (226)
T 3mlr_H           66 GQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGG  145 (226)
T ss_dssp             TTBEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSS
T ss_pred             CcEEEEecCCCCEEEEEECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCC
Confidence            5776653      3499999999999999999876421       0  11224566653    22222111112234788


Q ss_pred             cEEEEEEec--CCCCCCcEEEEeecCcccCC-----------Ccc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         71 SANFQCEIT--PYDSGPYLIAWFKDGRQIPG-----------RTS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        71 ~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~-----------~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+.|.|.+.  .|.  .+.+.|  ++..+..           +..   .+.|.+......| |.|.|.+.+..+
T Consensus       146 ~~~l~C~~~~~~p~--~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  214 (226)
T 3mlr_H          146 TAALGCLVKDYFPE--PVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  214 (226)
T ss_dssp             EEEEEEEEEEEBSS--CCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             CEEEEEEEEEEECC--CeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCC
Confidence            899999998  341  468999  3322211           011   3468888887778 999999998765

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.31  E-value=2.1e-11  Score=69.95  Aligned_cols=81  Identities=14%  Similarity=0.276  Sum_probs=61.9

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC--------CCcc---------eeeEEEccCCCCCCceEEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP--------GRTS---------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~--------~~~~---------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +....+.+|+.+.|.|.+. .|   .+.+.|++.+..+.        ...+         ...|.|.++..+|+|.|.|.
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   84 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSLRK---NSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCL   84 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCCCT---TCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CccEEEcCCCCEEEEeEEeccC---CCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEE
Confidence            4456788999999999999 88   89999987544311        1111         36899999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcCcCccc
Q psy11131        123 ARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      +.|. | .....+.|.|..+|...
T Consensus        85 a~n~-g-~~~~~~~l~V~~~P~~~  106 (124)
T 3rbg_A           85 HYSD-S-VSTKEVKVIVLATMKGE  106 (124)
T ss_dssp             EESS-S-EEEEEEEEEEECC----
T ss_pred             EEcC-C-CCcEEEEEEEEeCCCCC
Confidence            9998 7 68888999998887643

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.31  E-value=3.5e-11  Score=67.23  Aligned_cols=85  Identities=20%  Similarity=0.295  Sum_probs=64.0

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      +|.+...+....+.+|+.+.|.|.+. +   .+.+.|++++..+....+        ...|.|.++..+|.|.|.|.+. 
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~-~---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-   82 (108)
T 2dm7_A            8 PARFTQDLKTKEASEGATATLQCELS-K---VAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG-   82 (108)
T ss_dssp             CCCBCSCCBCCEEETTSCEEEEEEBS-S---SCCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEET-
T ss_pred             CCeeeecCCcEEEeCCCcEEEEEEeC-C---CCeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEc-
Confidence            34454555667889999999999885 3   456899999887654332        2359999999999999999983 


Q ss_pred             CCCCceeeeEEEEEcCcCcccc
Q psy11131        126 SDGDVAQGSAELQLGGTRNIKH  147 (150)
Q Consensus       126 ~~g~~~~~~~~l~v~~~p~~~~  147 (150)
                          .....+.|.|..+|+.+.
T Consensus        83 ----n~~~~~~l~V~~~p~~~~  100 (108)
T 2dm7_A           83 ----QERTSATLTVRALPARFT  100 (108)
T ss_dssp             ----TEEEEEECEEECCCSSCC
T ss_pred             ----CCEEEEEEEEecCCHHHc
Confidence                356778888888766543

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.31  E-value=1.1e-12  Score=81.54  Aligned_cols=99  Identities=14%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             CCCeEEEEEeccCCcceeEEEEE----EEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCC-cEEEEeecCcccCC
Q psy11131         27 EDSGTYRCSSSNIGGEATAEVRL----QVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGP-YLIAWFKDGRQIPG   99 (150)
Q Consensus        27 ~d~G~Y~C~~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~-~~~~w~~~~~~~~~   99 (150)
                      .|+|.|+|.+.+..+.......+    .+..+|.+...+.......|..+.|.|.+.  .|   . +.+.|++++..+..
T Consensus        78 ~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P---~~~~v~W~k~g~~~~~  154 (207)
T 1l6x_A           78 LNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYP---SDIAVEWESNGQPENN  154 (207)
T ss_dssp             HTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS---SCCEEEEEETTEEECC
T ss_pred             cCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeEC---CCeEEEEEECCeeccC
Confidence            34999999999876654333333    233445443322211112455699999998  45   4 49999999876542


Q ss_pred             Ccc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131        100 RTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus       100 ~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ...             ...|.+......|.|.|+|.+.|...
T Consensus       155 ~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          155 YKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            110             12233444334568999999998764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.31  E-value=1.4e-11  Score=66.93  Aligned_cols=58  Identities=22%  Similarity=0.472  Sum_probs=48.0

Q ss_pred             EEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      .+.+|+.+.|.|.+..|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.|.|
T Consensus        17 ~~~~g~~v~l~C~v~~p---~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A           17 HAITSECVMLACEVDRE---DAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             ECCTTCCEEEEEECSCT---TSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             EEECCCcEEEEEEECCC---CcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            34689999999997766   678999999988865543        34799999999999999999754

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.31  E-value=1.2e-11  Score=75.63  Aligned_cols=89  Identities=20%  Similarity=0.276  Sum_probs=68.9

Q ss_pred             cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEE
Q psy11131         53 TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      .+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....       ...|.|.++...|.|.|.|.+.
T Consensus         6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p---~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            6 KAPVITTPLETVDALVEEVATFMCAVESYP---QPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             EEEEESSCCCEEEEETTSCEEEECCEEEES---CCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCceeecCccceeeeCCCcEEEEeeCCCCC---CCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEE
Confidence            344555556667889999999999998 88   889999999877654221       3469999999999999999999


Q ss_pred             eCCCCceeeeEEEEEcCcCc
Q psy11131        125 RSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p~  144 (150)
                      +..|........+.|..+|.
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~  102 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPK  102 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEE
T ss_pred             cCCCceeEeEEEEEEEeCCc
Confidence            98875456666777766544

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.31  E-value=8.9e-13  Score=83.44  Aligned_cols=109  Identities=11%  Similarity=0.193  Sum_probs=70.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe----cCceEEe-CCCcEEEecCCcEEEEEEec-C-CCCCCcEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS----TPYRVDV-NPPLLSVHLDGSANFQCEIT-P-YDSGPYLIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~----~~~~~~~-~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~   89 (150)
                      ..|.|.++..+|.|.|+|.+.+..+.......+.+.    .+|.+.. .+.... ..+..+.|.|.+. . |.  .+.+.
T Consensus        77 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~--~~~v~  153 (231)
T 2w59_A           77 SAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPR--DIEIR  153 (231)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSS--CCEEE
T ss_pred             EEEEecchhccCCCEEEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCC--CcEEE
Confidence            469999999999999999999876543333333221    2343332 222111 2245699999998 3 41  37999


Q ss_pred             EeecCcccCCC-------------------c-c----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         90 WFKDGRQIPGR-------------------T-S----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        90 w~~~~~~~~~~-------------------~-~----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |++++..+...                   . .    .+.|.+......|.|.|.|.|.|...
T Consensus       154 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l  216 (231)
T 2w59_A          154 WLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL  216 (231)
T ss_dssp             EEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence            99988765321                   1 1    23455666666679999999998765

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.30  E-value=4.7e-11  Score=78.04  Aligned_cols=87  Identities=22%  Similarity=0.404  Sum_probs=71.7

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....          ...|.|.++..+|.|.|.|.
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHP---KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSS---CCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCC---CCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            45666677788899999999999998 88   899999999877654321          23899999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcCcCc
Q psy11131        123 ARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      +.|..| ..+..+.|.|..+|.
T Consensus        81 a~n~~g-~~~~~~~l~V~~~p~  101 (305)
T 2nzi_A           81 ATNQGG-SVSGTASLEVEVPAK  101 (305)
T ss_dssp             EEETTE-EEEEEEEEEECEEEE
T ss_pred             EEcCCC-CccceEEEEEecCCc
Confidence            999988 577888888876553

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.30  E-value=1.4e-11  Score=76.75  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             CCceEEeC-------CeEEEcCCCCCCCeEEEEEeccCCc---------c--eeEEEEEEEecCceEEeCCCcEEEecCC
Q psy11131          9 GPRTRVLG-------PILAIEGVTAEDSGTYRCSSSNIGG---------E--ATAEVRLQVSTPYRVDVNPPLLSVHLDG   70 (150)
Q Consensus         9 ~~~~~~~~-------~~l~i~~~~~~d~G~Y~C~~~~~~~---------~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~   70 (150)
                      ++|+.+..       .+|.|.+++.+|+|.|.|.+.+..+         .  ....+.|.|........ +..+.+..+ 
T Consensus        56 ~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~-~P~v~~~~~-  133 (207)
T 1ypz_E           56 NGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA-KPSVFIMKN-  133 (207)
T ss_dssp             ETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCC-CCEEEEEEE-
T ss_pred             CCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCC-CCeEEEeCC-
Confidence            45666652       4799999999999999999887532         1  11335777775211111 222222222 


Q ss_pred             cEEEEEEec--CCCCCCcEEEEeecCcccCCCc------ceeeEEEccCCC-CCCceEEEEEEeCCC
Q psy11131         71 SANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT------SSTSLVINPVGR-EDRGIYQCIARRSDG  128 (150)
Q Consensus        71 ~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~------~~~~l~~~~~~~-~~~g~y~C~~~~~~g  128 (150)
                      .+.|.|.+.  .|.  .+.+.|.++ ..+....      ....+.+..... .+.|.|.|.+.+..+
T Consensus       134 ~~~l~C~~~g~~P~--~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~  197 (207)
T 1ypz_E          134 GTNVACLVKDFYPK--EVTISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE  197 (207)
T ss_dssp             TTEEEEEEEEESSS--CCEEEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred             CCeEEEEEeeEeCC--CeEEEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence            368999998  451  279999988 5443211      122334433333 567899999998765

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.30  E-value=6.4e-11  Score=72.47  Aligned_cols=84  Identities=25%  Similarity=0.334  Sum_probs=68.0

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....          ...|.|.++...|.|.|.|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFP---VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK   81 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecC---CCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            45556667778899999999999998 88   889999999887654421          45899999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcC
Q psy11131        123 ARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~  141 (150)
                      +.+..| .....+.+.|..
T Consensus        82 ~~n~~~-~~~~~~~l~v~~   99 (194)
T 2a38_A           82 ATNGSG-QATSTAELLVKA   99 (194)
T ss_dssp             EEETTE-EEEEEEEEEEEC
T ss_pred             EEcCCc-eEeEEEEEEEcc
Confidence            999887 466666777763

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.29  E-value=4.4e-11  Score=73.04  Aligned_cols=107  Identities=12%  Similarity=0.200  Sum_probs=75.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce-EEeCCCcEEEecCCcEEEEEEec--CCCCCC--cEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEIT--PYDSGP--YLIAWF   91 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~--~~~~w~   91 (150)
                      ..|.|.+++. | |.|.|.+..........+.|+|..+|. +.+.+....+.+|+.++|.|.+.  .|   .  +.+.|+
T Consensus        50 ~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P---~~~l~i~w~  124 (185)
T 1iam_A           50 KVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAP---RAQLTVVLL  124 (185)
T ss_dssp             EEEEEEEECS-C-BCCEEEEECSSCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBC---GGGEEEEEE
T ss_pred             eEEEEEecCc-C-CEEEEEEECCCCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccC---CCCcEEEEE
Confidence            4589999973 4 999999876544567788888886554 44555555688999999999998  55   4  469999


Q ss_pred             ecCcccCCCc-----ceeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         92 KDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        92 ~~~~~~~~~~-----~~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +++..+....     ....+.+.....+|...|.|.|.+..+
T Consensus       125 kg~~~l~~~~~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          125 RGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             ETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             eCCEEcccccCCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence            9887664311     133555554444444489999998765

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.29  E-value=6.1e-11  Score=64.77  Aligned_cols=76  Identities=24%  Similarity=0.408  Sum_probs=59.0

Q ss_pred             EEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +...+....+.+|+.+.|.|.+..|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+    |
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~~~p---~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g   83 (95)
T 2k1m_A           11 FSKKPRSVEVAAGSPAVFEAETERA---GVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----G   83 (95)
T ss_dssp             CSBCCCCEEEETTSCEEEEEECSSS---SCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----T
T ss_pred             eEeCCCcEEEeCCCcEEEEEEeCCC---CCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----C
Confidence            3445567788999999999998655   778999999887654332        347999999999999999998    4


Q ss_pred             CceeeeEEEEEc
Q psy11131        129 DVAQGSAELQLG  140 (150)
Q Consensus       129 ~~~~~~~~l~v~  140 (150)
                       .....+.|.|.
T Consensus        84 -~~~~~~~l~V~   94 (95)
T 2k1m_A           84 -SSKVKFDLKVI   94 (95)
T ss_dssp             -TEEEEEEEEEE
T ss_pred             -CceEEEEEEEe
Confidence             35566777664

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.29  E-value=1.4e-11  Score=83.26  Aligned_cols=110  Identities=14%  Similarity=0.189  Sum_probs=75.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE----EEecCceEEeCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL----QVSTPYRVDVNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w   90 (150)
                      ..|.|.++..+|.|.|+|.+.+..+.......+    .+..+|.+...+.......|+.+.|.|.+. . |.  ...+.|
T Consensus       233 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~--~i~v~W  310 (376)
T 2aty_A          233 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPE--DITVEW  310 (376)
T ss_pred             EEEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECC--CcEEEE
Confidence            579999999999999999999875543322233    334556665554443334588899999998 3 31  568999


Q ss_pred             eecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         91 FKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        91 ~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ++++..+.....             .+.|.+......+.|.|+|.|.+...
T Consensus       311 ~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          311 QWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            999876532110             24466666666678999999998754

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.29  E-value=2.1e-11  Score=71.76  Aligned_cols=83  Identities=17%  Similarity=0.245  Sum_probs=63.5

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee---------cCcccCCCcc--------eeeEEEccCCCCCCceEE
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK---------DGRQIPGRTS--------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~---------~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~  120 (150)
                      ..+....+.+|+.+.|.|.+. .|   .+.+.|++         ++..+.....        ...|.|.++...|.|.|.
T Consensus        43 ~~p~~~~v~~G~~v~L~C~~~~~~---~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~  119 (145)
T 1z9m_A           43 PWTSDETVVAGGTVVLKCQVKDHE---DSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYT  119 (145)
T ss_dssp             CBCCCEEEETTSCEEEEEECSCCT---TCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEE
T ss_pred             cCCceEEEEcCCCEEEEEEEcCCC---CcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEE
Confidence            445677899999999999998 77   78999983         3322221111        367999999999999999


Q ss_pred             EEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131        121 CIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       121 C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      |.+.|. + .....+.|.|.++|..+
T Consensus       120 C~~~n~-~-~~~~~~~L~V~~~P~~P  143 (145)
T 1z9m_A          120 CSIFTM-P-VRTAKSLVTVLGIPQKP  143 (145)
T ss_dssp             EEECSS-S-CEEEEEEEEEECCCC--
T ss_pred             EEEEcC-C-CceEEEEEEEEeCCCCC
Confidence            999998 7 67888899998877543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.29  E-value=6.6e-11  Score=74.03  Aligned_cols=86  Identities=22%  Similarity=0.324  Sum_probs=71.0

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      .+.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.... ...|.|.++...|.|.|.|.+.+..+...+
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s   93 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHP---FVQYQWFKMNKEIPNGN-TSELIFNAVHVKDAGFYVCRVNNNFTFEFS   93 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTT---SSEEEEEETTEECTTCC-SSEEEETTCCGGGCEEEEEEEECTTCCEEC
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCC---CCEEEEEECCEECCCCC-CCEEEEccCChhhCeEeEEEEEcCCCCcee
Confidence            34566677888899999999999999 88   89999999988776544 578999999999999999999998775446


Q ss_pred             eeEEEEEcCcC
Q psy11131        133 GSAELQLGGTR  143 (150)
Q Consensus       133 ~~~~l~v~~~p  143 (150)
                      ..+.+.|...+
T Consensus        94 ~~~~l~V~~~~  104 (218)
T 3k0w_A           94 QWSQLDVCDIP  104 (218)
T ss_dssp             CCEEEEEECCC
T ss_pred             eEEEEEEEccC
Confidence            66777776653

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=7.3e-12  Score=69.25  Aligned_cols=81  Identities=22%  Similarity=0.320  Sum_probs=61.0

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCc----c--------eeeEEEccCCCCCCceEEEE
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT----S--------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~----~--------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +.+...+....+.+|+.+.|.|.+...   ++.+.|++++..+....    +        ...|.|.++..+|.|.|.|.
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~~~~---~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   85 (101)
T 2edk_A            9 VLIVTPLEDQQVFVGDRVEMAVEVSEE---GAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVI   85 (101)
T ss_dssp             CCEEECCCCEEEESSCCCBCCEEESCS---SCCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEE
T ss_pred             CEEEecCCceEEcCCCCEEEEEEEeCC---CCEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEE
Confidence            345555667788999999999999833   46799999988775443    1        34699999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcCcC
Q psy11131        123 ARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      +.|     ....+.|.|.++|
T Consensus        86 a~n-----~~~~~~l~V~~~P  101 (101)
T 2edk_A           86 TNG-----GQCEAELIVEEKQ  101 (101)
T ss_dssp             CSS-----CEECCBEEEECCC
T ss_pred             EcC-----CcEEEEEEEeCCC
Confidence            875     2445566666654

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.27  E-value=1.4e-10  Score=81.36  Aligned_cols=117  Identities=17%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCCc----------c---eeEEEEEEEec----CceEE-eCCCcE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGG----------E---ATAEVRLQVST----PYRVD-VNPPLL   64 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~----------~---~~~~~~l~v~~----~~~~~-~~~~~~   64 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+.+..+          .   ....+.|.|..    +|.+. ..+...
T Consensus        66 ~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~  145 (512)
T 1zvo_C           66 RGRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCR  145 (512)
T ss_pred             CCceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcc
Confidence            36777652      4799999999999999999887531          1   12345777763    23332 122111


Q ss_pred             EEecCCcEEEEEEec-C-CCCCCc-EEEEeecCcccCC---------Ccc---eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         65 SVHLDGSANFQCEIT-P-YDSGPY-LIAWFKDGRQIPG---------RTS---STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~-p~~~~~-~~~w~~~~~~~~~---------~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      ....++.+.|.|.+. . |   .+ .+.|++++.....         ...   .+.|.|...... .|.|+|.+.|..+.
T Consensus       146 ~~~~~~~v~L~C~~~g~~P---~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~  221 (512)
T 1zvo_C          146 HPKDNSPVVLACLITGYHP---TSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASK  221 (512)
T ss_pred             cccCCCeEEEEEEEEeeec---CceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCC
Confidence            012467899999998 4 6   54 8999986543110         001   245777766666 89999999998873

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.26  E-value=6.2e-12  Score=83.83  Aligned_cols=109  Identities=10%  Similarity=0.248  Sum_probs=68.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEE------------------------EecCceEEeCCCcEEEecCCcE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ------------------------VSTPYRVDVNPPLLSVHLDGSA   72 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~------------------------v~~~~~~~~~~~~~~~~~g~~~   72 (150)
                      +.|.|.++..+| |.|+|.+.|..+.......+.                        +..+|.+...+.......|..+
T Consensus       182 s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~  260 (344)
T 1za6_B          182 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQV  260 (344)
T ss_dssp             EEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSE
T ss_pred             EEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcE
Confidence            478999998888 999999998766533322222                        1123333322211112246679


Q ss_pred             EEEEEec-C-CCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         73 NFQCEIT-P-YDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        73 ~l~C~~~-~-p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|.|.+. . |.  .+.+.|.+++..+.....             ...|.+.....+|.|.|+|.+.+...
T Consensus       261 ~L~C~~~g~~P~--~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l  329 (344)
T 1za6_B          261 SLTCLVKGFYPS--DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  329 (344)
T ss_dssp             EEEEEEEEEBSS--CCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTS
T ss_pred             EEEEEEeeEECC--CeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCC
Confidence            9999997 4 31  368999999876642210             23345555555679999999998754

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.26  E-value=1.7e-13  Score=93.97  Aligned_cols=110  Identities=15%  Similarity=0.213  Sum_probs=73.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE----EEecCceEEeCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL----QVSTPYRVDVNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w   90 (150)
                      +.|.|.++..+|.|.|+|.+.|..+.......+    .+..+|.+...+.......|..+.|.|.+. . |.  .+.+.|
T Consensus       295 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~--~~~v~W  372 (434)
T 1igy_B          295 SALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPE--DITVEW  372 (434)
T ss_dssp             CCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCS--CEEEEE
T ss_pred             EEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECC--CeEEEE
Confidence            569999999999999999999877654222222    233445443333221123566799999997 3 41  359999


Q ss_pred             eecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         91 FKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        91 ~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ++++..+.....             .+.|.+.....+|.|.|+|.|.|...
T Consensus       373 ~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          373 QSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             EETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred             EECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence            999887642210             23455666666679999999999765

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.25  E-value=8.2e-11  Score=72.41  Aligned_cols=83  Identities=18%  Similarity=0.217  Sum_probs=63.8

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCC-------cceeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-------TSSTSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      |.+...+.. .+.+|+.+.|.|.+..+   .+.+.|++++..+...       .....|.|.++..+|+|.|.|.+.|..
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~~---~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            6 PTLWAEPGS-VISWGNSVTIWCQGTLE---AREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT---CCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEccCCC-cCCCCCcEEEEeeCCCC---CCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            444444554 68899999999998755   6899999998766432       115789999999999999999999987


Q ss_pred             C-CceeeeEEEEEcC
Q psy11131        128 G-DVAQGSAELQLGG  141 (150)
Q Consensus       128 g-~~~~~~~~l~v~~  141 (150)
                      | ...+..+.|.|.+
T Consensus        82 g~~~~s~~~~l~V~~   96 (196)
T 3p2t_A           82 GWSQPSDPLELVMTG   96 (196)
T ss_dssp             EEBCCCCCEEEEEEC
T ss_pred             cccCCCccEEEEecC
Confidence            7 2346677777764

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.25  E-value=1.9e-10  Score=70.19  Aligned_cols=88  Identities=23%  Similarity=0.492  Sum_probs=67.6

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee-cCcccCCCcc----------eeeEEEccCCCCCCceEEEEE
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK-DGRQIPGRTS----------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~-~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      .+...+....+.+|+.+.|.|.+. .+.  .+.+.|++ ++..+.....          ...|.|.++..+|.|.|.|.+
T Consensus         4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~--~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            4 QVDIVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSC--CCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEecCCCcEEcCCCCEEEEEECCCCCC--CceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            344556677889999999999998 431  68999998 7766553211          468999999999999999999


Q ss_pred             EeCCCCceeeeEEEEEcCcCcc
Q psy11131        124 RRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .+..+...+..+.+.|..+|..
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p~~  103 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKLMF  103 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCSEE
T ss_pred             EcCCCcceEEEEEEEeecCceE
Confidence            9988546677788888766543

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=4.1e-10  Score=63.31  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=65.1

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCc----------c--------eeeEEEccCCCCCC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT----------S--------STSLVINPVGREDR  116 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~----------~--------~~~l~~~~~~~~~~  116 (150)
                      +.+...+....+.+|+.+.|.|.+. +   .+.+.|++++..+....          +        ...|.|.++..+|+
T Consensus         9 ~~~~~~l~d~~v~eG~~a~f~C~vs-~---~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~   84 (112)
T 2e6q_A            9 ARLVAGLEDVQVYDGEDAVFSLDLS-T---IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS   84 (112)
T ss_dssp             CCEEECCCCEEEETTCEEEEEEEES-S---CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred             cEEecCCCCeEEcCCCcEEEEEEEC-C---CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence            4455666778899999999999996 3   45688999999887664          3        23799999999999


Q ss_pred             ceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131        117 GIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       117 g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      |.|.|...+    ....++.|.|.++|..
T Consensus        85 G~Y~~~~~~----~~~ssA~L~V~~~p~~  109 (112)
T 2e6q_A           85 GALVGFSCP----GVQDSAALTIQESSGP  109 (112)
T ss_dssp             SEEEEEEET----TEEEEEEEEEECSSCS
T ss_pred             ccEEEEEEC----CeeEEEEEEEeCCCcc
Confidence            999876553    3456889999888754

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.22  E-value=7.6e-11  Score=73.46  Aligned_cols=88  Identities=25%  Similarity=0.423  Sum_probs=66.5

Q ss_pred             cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------ee----eEEEccCCCCCCceE
Q psy11131         53 TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------ST----SLVINPVGREDRGIY  119 (150)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~----~l~~~~~~~~~~g~y  119 (150)
                      .+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....        ..    .+.|.++...|.|.|
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKP---EPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSS---CCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCC---CCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence            355666777778899999999999998 88   899999999887654311        11    225677889999999


Q ss_pred             EEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        120 QCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       120 ~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      .|.+.|..|...+..+.+.|...|
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~~~  108 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAVLR  108 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECEEC
T ss_pred             EEEEecCCCccccccceEEEEEeC
Confidence            999999887433556677776533

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.22  E-value=5.4e-12  Score=87.05  Aligned_cols=109  Identities=12%  Similarity=0.262  Sum_probs=69.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe-----------------cCceE-EeCCCcEE-EecCCcEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS-----------------TPYRV-DVNPPLLS-VHLDGSANFQCE   77 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~-----------------~~~~~-~~~~~~~~-~~~g~~~~l~C~   77 (150)
                      ..|.|.++..+| |.|+|.+.+..+.......+.+.                 .+|.+ ...+.... +.+|+.+.|.|.
T Consensus       194 s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~  272 (457)
T 1hzh_H          194 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCV  272 (457)
T ss_dssp             EEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEE
T ss_pred             EEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEE
Confidence            479999999999 99999999976554444444432                 12333 22222211 457999999999


Q ss_pred             ec-CCCCCCc---EEEEeecCcccCCCcc-------eeeEEEc---cCCCCC---CceEEEEEEeCCC
Q psy11131         78 IT-PYDSGPY---LIAWFKDGRQIPGRTS-------STSLVIN---PVGRED---RGIYQCIARRSDG  128 (150)
Q Consensus        78 ~~-~p~~~~~---~~~w~~~~~~~~~~~~-------~~~l~~~---~~~~~~---~g~y~C~~~~~~g  128 (150)
                      +. .|.  .|   .+.|++++..+.....       ...+.+.   .+...|   .|.|.|.+.|..+
T Consensus       273 ~~g~~p--~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~  338 (457)
T 1hzh_H          273 VVDVSH--EDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL  338 (457)
T ss_dssp             EECCCT--TCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTS
T ss_pred             EEcccC--CCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCC
Confidence            98 540  32   9999999876543211       1222222   123445   8999999998655

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.22  E-value=1.3e-12  Score=81.67  Aligned_cols=110  Identities=13%  Similarity=0.280  Sum_probs=69.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEE---EecCceEEeCC-CcEEEecCCcEEEEEEec--CCCCCCcEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ---VSTPYRVDVNP-PLLSVHLDGSANFQCEIT--PYDSGPYLIAW   90 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~---v~~~~~~~~~~-~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w   90 (150)
                      ..|.|.++..+|.|.|+|.+.+..+.......+.   +..+|.+...+ ....+..|+.+.|.|.+.  .|.  .+.+.|
T Consensus        66 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~--~~~v~W  143 (214)
T 1ow0_A           66 SVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPK--DVLVRW  143 (214)
T ss_dssp             EECTTTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSS--CCEEEE
T ss_pred             EEEEEeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECC--CcEEEE
Confidence            5688888889999999999998765433333332   23445543322 222245688899999998  451  259999


Q ss_pred             eecCcccCCCc------------c------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         91 FKDGRQIPGRT------------S------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        91 ~~~~~~~~~~~------------~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ++++..+....            .      .+.|.+......+.|.|.|.|.|...
T Consensus       144 ~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          144 LQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             EETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             EECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            99987654321            1      11222332222347899999998764

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.21  E-value=5e-11  Score=77.00  Aligned_cols=114  Identities=17%  Similarity=0.268  Sum_probs=71.7

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccC------Cc-------------------ceeEEEEEEEec----
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNI------GG-------------------EATAEVRLQVST----   53 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~------~~-------------------~~~~~~~l~v~~----   53 (150)
                      .+|+.+..      .+|.|.+++.+|+|.|.|.+.+.      .+                   .-...+.|.|..    
T Consensus        88 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~  167 (267)
T 3u1s_H           88 QGRVTITRDSGASTVYMELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTK  167 (267)
T ss_dssp             TTTEEEEECGGGCCEEEEECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCB
T ss_pred             CCcEEEEEcCCCCEEEEEECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCC
Confidence            36777653      34999999999999999998620      00                   011134566652    


Q ss_pred             CceEE-eCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCC-----------cc---eeeEEEccCCCCCC
Q psy11131         54 PYRVD-VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR-----------TS---STSLVINPVGREDR  116 (150)
Q Consensus        54 ~~~~~-~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~-----------~~---~~~l~~~~~~~~~~  116 (150)
                      +|.+. ..+... ...|+.+.|.|.+.  .|.  ...+.|  ++..+...           ..   .+.|.+.....+| 
T Consensus       168 ~P~v~~~~~~~~-~~~g~~~~l~C~~~~~~p~--~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-  241 (267)
T 3u1s_H          168 GPSVFPLAPSSK-STSGGTAALGCLVKDYFPE--PVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-  241 (267)
T ss_dssp             CCEEEEECCCGG-GEETTEEEEEEEEEEEBSS--CCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-
T ss_pred             CCEEEEecCCcc-cCCCCcEEEEEEEeEEECC--CeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-
Confidence            23333 233221 24688899999998  442  568999  44333210           11   3467787777778 


Q ss_pred             ceEEEEEEeCCC
Q psy11131        117 GIYQCIARRSDG  128 (150)
Q Consensus       117 g~y~C~~~~~~g  128 (150)
                      +.|+|.+.+..+
T Consensus       242 ~~ytC~v~h~~~  253 (267)
T 3u1s_H          242 QTYICNVNHKPS  253 (267)
T ss_dssp             CCCEEEEEEGGG
T ss_pred             CEEEEEEEECCC
Confidence            999999998765

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.21  E-value=3.6e-10  Score=70.06  Aligned_cols=78  Identities=15%  Similarity=0.298  Sum_probs=60.1

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecC-cccCCC----cceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG-RQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~-~~~~~~----~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      ..+.+|+.+.|.|.+. .|   .+.+.|.+.. ..+...    .....|.|.++..+|.|.|.|.+.|..| ..+..+.|
T Consensus        11 ~~~~~G~~v~L~C~~~g~P---~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~-~~~~~~~l   86 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCE---SPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR-KLEKGIQV   86 (202)
T ss_dssp             EEEETTSCEEEEEEEESCS---SCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTE-EEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCC---CCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCc-eEeeEEEE
Confidence            3445999999999999 88   8999998732 211111    0145799999999999999999999887 57778899


Q ss_pred             EEcCcCcc
Q psy11131        138 QLGGTRNI  145 (150)
Q Consensus       138 ~v~~~p~~  145 (150)
                      .|..+|..
T Consensus        87 ~V~~~p~~   94 (202)
T 1vca_A           87 EIYSFPKD   94 (202)
T ss_dssp             EEEBCCSC
T ss_pred             EEEeCCCC
Confidence            99877654

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=1.3e-10  Score=64.23  Aligned_cols=73  Identities=27%  Similarity=0.538  Sum_probs=58.5

Q ss_pred             cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      ...+.+|+.+.|.|.+..|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.     .....
T Consensus        20 ~~~v~~G~~v~L~C~~~~p---~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-----~~~~~   91 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVAQA---QTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAG-----GQQLS   91 (102)
T ss_dssp             EEEEETTCCEEECCBCSCS---SSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEET-----TEECC
T ss_pred             cEEEeCCCcEEEEEEecCC---CCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcC-----CCcEE
Confidence            4568899999999998766   789999999987754432        2589999999999999999984     34566


Q ss_pred             EEEEEcCcC
Q psy11131        135 AELQLGGTR  143 (150)
Q Consensus       135 ~~l~v~~~p  143 (150)
                      +.|.|.++|
T Consensus        92 ~~l~V~~p~  100 (102)
T 2eo1_A           92 FRLQVAGQC  100 (102)
T ss_dssp             EEEEEESCC
T ss_pred             EEEEEeCCC
Confidence            788887764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.21  E-value=1.5e-10  Score=70.52  Aligned_cols=87  Identities=13%  Similarity=0.248  Sum_probs=62.2

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc--c-----eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S-----STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~-----~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+....  +     ...|.|.++...|.|.|.|.+.+.
T Consensus         3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   79 (189)
T 2v5t_A            3 LTFREVVSPQEFKQGEDAEVVCRVSSSP---APAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE   79 (189)
T ss_dssp             CEEEECCSSEEEETTSCEEECCEEECSS---CCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeccCCCEEEeCCCcEEEEEEEcCCC---CCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEc
Confidence            4455566778899999999999998 88   89999999877654221  1     457999999999999999999988


Q ss_pred             CCC-ceeeeEEEEEcCcCc
Q psy11131        127 DGD-VAQGSAELQLGGTRN  144 (150)
Q Consensus       127 ~g~-~~~~~~~l~v~~~p~  144 (150)
                      .+. .....+.+.+..+|.
T Consensus        80 ~~~~~~~~~~~l~v~~~p~   98 (189)
T 2v5t_A           80 ARGEIDFRDIIVIVNVPPA   98 (189)
T ss_dssp             TTTEEEEEEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEEecCCCC
Confidence            752 233455666655543

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.20  E-value=2.1e-10  Score=70.64  Aligned_cols=84  Identities=18%  Similarity=0.232  Sum_probs=63.1

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC-------cceeeEEEccCCCCCCceEEEEEEe
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR-------TSSTSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      +|.+...+.. .+.+|+.+.|.|.+. .|   . .+.|++++..+...       .....|.|.++..+|.|.|.|.+.|
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~---~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            5 KATLWAEPGS-VISRGNSVTIRCQGTLEA---Q-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             BCEEEEESCS-EEETTCCEEEEEECCTTC---C-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCC-cccCCCeEEEEEeCCCCC---c-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            4455544543 678999999999988 65   4 99999998766421       1167899999999999999999998


Q ss_pred             CCCC-ceeeeEEEEEcCc
Q psy11131        126 SDGD-VAQGSAELQLGGT  142 (150)
Q Consensus       126 ~~g~-~~~~~~~l~v~~~  142 (150)
                      ..|. ..+..+.|.|...
T Consensus        80 ~~g~~~~s~~~~l~V~~~   97 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGF   97 (196)
T ss_dssp             TTEECBCCCCEEEEEECS
T ss_pred             CCCcCCcCccEEEEecCC
Confidence            7762 2345677777663

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.20  E-value=1.7e-10  Score=64.16  Aligned_cols=70  Identities=21%  Similarity=0.363  Sum_probs=54.4

Q ss_pred             cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCC-cc--------eeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131         63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-TS--------STSLVINPVGREDRGIYQCIARRSDGDVAQG  133 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~-~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~  133 (150)
                      ...+.+|+.+.|.|.+..|   .+.+.|++++..+... ..        ...|.|.++..+|+|.|.|.+.     ....
T Consensus        25 ~~~v~~G~~v~L~C~~~~p---~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-----~~~~   96 (104)
T 1pd6_A           25 AYQVSKGHKIRLTVELADH---DAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG-----GEKC   96 (104)
T ss_dssp             EEEEETTSCEEEEEECSSS---SSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET-----TEEE
T ss_pred             cEEEecCCCEEEEEEEcCC---CCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEEC-----CCcE
Confidence            3678999999999998756   6779999999877654 22        2389999999999999999983     2445


Q ss_pred             eEEEEEc
Q psy11131        134 SAELQLG  140 (150)
Q Consensus       134 ~~~l~v~  140 (150)
                      .+.|.|.
T Consensus        97 ~~~l~V~  103 (104)
T 1pd6_A           97 STELFVK  103 (104)
T ss_dssp             CCEEEEE
T ss_pred             EEEEEEe
Confidence            5555553

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.20  E-value=2.2e-10  Score=77.23  Aligned_cols=81  Identities=23%  Similarity=0.256  Sum_probs=65.8

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccCCC-----cc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIPGR-----TS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~~~-----~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +....+.+|+.+.|.|.+. .|   .+.+.|+++  +..+...     .+        ...|.|.++..+|.|.|.|.+.
T Consensus         7 ~~~~~~~~G~~v~l~C~~~g~p---~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   83 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAEGEP---IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA   83 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEECSS---CCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred             cCceEEeCCCeEEEEEEeeccc---CCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEE
Confidence            4456678899999999999 88   899999998  6655431     11        3589999999999999999999


Q ss_pred             eCCCCceeeeEEEEEcCcCcc
Q psy11131        125 RSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      |..| ..+..+.|.|..+|.+
T Consensus        84 n~~g-~~~~~~~l~V~~~P~~  103 (389)
T 2jll_A           84 SRIG-GHQKSMYLDIEYAPKF  103 (389)
T ss_dssp             CSSC-EEEEEEEEEEEEEEEE
T ss_pred             eCCC-CcceEEEEEEEeCCEE
Confidence            9999 5788888888876654

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.20  E-value=3.8e-11  Score=67.25  Aligned_cols=80  Identities=21%  Similarity=0.418  Sum_probs=55.1

Q ss_pred             EecCCcEEEEEEec-CCC--CCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCC--CceeeeEEEEEc
Q psy11131         66 VHLDGSANFQCEIT-PYD--SGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG--DVAQGSAELQLG  140 (150)
Q Consensus        66 ~~~g~~~~l~C~~~-~p~--~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g--~~~~~~~~l~v~  140 (150)
                      +.+|+.+.|.|.+. .+.  .....+.|++++..+........|.|..+..+|+|.|.|.+.+..+  ...+..+.|.|.
T Consensus        19 v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~~~~~~~l~i~~v~~~dsG~Y~C~~~~~~~~~~~~S~~l~L~V~   98 (108)
T 4hwn_A           19 PQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQSRGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLEIRVQ   98 (108)
T ss_dssp             CBTTCCEEEEEEC---------CCEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEECTTSSSEEECCCEEECCB
T ss_pred             CCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccCCCcccEEEeCccCcccCeEEEEEEEeCCCceeccCCCEEEEEE
Confidence            67899999999987 440  0012499999987764322257899999999999999999998754  235667888887


Q ss_pred             CcCcc
Q psy11131        141 GTRNI  145 (150)
Q Consensus       141 ~~p~~  145 (150)
                      ++...
T Consensus        99 g~~~~  103 (108)
T 4hwn_A           99 GASAE  103 (108)
T ss_dssp             C----
T ss_pred             ecchh
Confidence            76543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.19  E-value=1.1e-10  Score=73.12  Aligned_cols=77  Identities=21%  Similarity=0.405  Sum_probs=63.6

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      ....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++...|.|.|.|.+.|..+ ..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~-~~  102 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNP---MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SI  102 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEES---CCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE-EE
T ss_pred             eeEEEccCCCEEEEEecccCC---CCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccC-cc
Confidence            567789999999999999 88   889999999877653322         34799999999999999999999888 56


Q ss_pred             eeeEEEEEcCc
Q psy11131        132 QGSAELQLGGT  142 (150)
Q Consensus       132 ~~~~~l~v~~~  142 (150)
                      ...+.+.|...
T Consensus       103 ~~~~~l~V~~~  113 (231)
T 3ojm_B          103 NHTYHLDVVER  113 (231)
T ss_dssp             EEEEEEEEECC
T ss_pred             cccEEEEEEcC
Confidence            67777777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.19  E-value=1.5e-10  Score=79.70  Aligned_cols=89  Identities=21%  Similarity=0.355  Sum_probs=66.8

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCccc-CCC---cc-----eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQI-PGR---TS-----STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~-~~~---~~-----~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +|.+...+....+.+|+.+.+.|.+..|   .|.+.|++++..+ ...   .+     ...|.|.++..+|+|.|+|.|.
T Consensus       341 ~P~i~~~~~~~~v~~G~~v~L~C~~~~p---~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  417 (440)
T 3zyj_A          341 APVIVEPPADLNVTEGMAAELKCRASTS---LTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVS  417 (440)
T ss_dssp             CCCEEECCCCEEECTTSCCEECCEESST---TSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEE
T ss_pred             CCcccccccceeeccCceEEEEeecCCC---CCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEE
Confidence            4556666777889999999999998766   7899999854432 111   11     4679999999999999999999


Q ss_pred             eCCCCceeeeEEEEEcCcCccc
Q psy11131        125 RSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      |..| ..+.++.+.|.++|+..
T Consensus       418 N~~G-~~~~~~~~~v~~~~~~~  438 (440)
T 3zyj_A          418 NSVG-NTTASATLNVTGTHHHH  438 (440)
T ss_dssp             CSSC-EEEEEEEEEEC------
T ss_pred             cCCC-cEEEEEEEEEecccccc
Confidence            9999 68889999998877643

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.18  E-value=8.1e-11  Score=72.42  Aligned_cols=109  Identities=8%  Similarity=0.087  Sum_probs=73.9

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce-EEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG   94 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~   94 (150)
                      .+.|.+++ +|.+.|.|.+.-........+.|.|..+|. +.+.+....+.+|+.++|.|.+.  .|. ....+.|++++
T Consensus        53 ~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~-~~L~i~wlkg~  130 (196)
T 3bn3_B           53 ARQLVDIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPR-ASLTLTLLRGA  130 (196)
T ss_dssp             EEEEEEEC-SSEECCEEEEEETTEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCG-GGEEEEEEETT
T ss_pred             EEEEEEEc-cCCCceEEEEECCCCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCC-CCcEEEEEeCC
Confidence            38899998 888889999776545567788888886544 33444333478999999999998  551 02458999988


Q ss_pred             cccCCCc----c------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         95 RQIPGRT----S------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        95 ~~~~~~~----~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..+....    .      ...+.+.....++...|.|.|.+..+
T Consensus       131 ~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          131 QELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             EEEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             EEeeccccccccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence            7653211    0      23455554444444489999998765

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.18  E-value=1.5e-10  Score=75.64  Aligned_cols=124  Identities=11%  Similarity=0.151  Sum_probs=77.8

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce-EEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG   94 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~   94 (150)
                      .|.|.++...  |.|.|.+..........+.|.|..+|. +.+.+....+.+|+.+.|.|.+.  .|.. .+.+.|++++
T Consensus        51 ~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~-~l~itW~kg~  127 (291)
T 1mq8_A           51 VYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRA-NLTVVLLRGE  127 (291)
T ss_dssp             EEEEESCCSC--CCCEEEEECSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTT-TEEEEEESSS
T ss_pred             EEEEEecccC--CeEEEEEEcCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCC-CcEEEEEECC
Confidence            4788898754  469999875433455667888886554 22333333477899999999998  4410 2379999998


Q ss_pred             cccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCC-------ceeeeEEEEEcCcCc
Q psy11131         95 RQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGD-------VAQGSAELQLGGTRN  144 (150)
Q Consensus        95 ~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~-------~~~~~~~l~v~~~p~  144 (150)
                      ..+.....     ...+.+.....++.+.|.|.|.+..+.       ..+....|.|..+|+
T Consensus       128 ~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~  189 (291)
T 1mq8_A          128 KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA  189 (291)
T ss_dssp             SEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----
T ss_pred             EEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCC
Confidence            76542221     345555555555666899999986541       134556777777753

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.17  E-value=1.4e-10  Score=71.92  Aligned_cols=88  Identities=27%  Similarity=0.481  Sum_probs=65.3

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------ee-----eEEEccCCCCCCc
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------ST-----SLVINPVGREDRG  117 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~-----~l~~~~~~~~~~g  117 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....          ..     .+.+.++...|.|
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRP---TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEES---CCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCC---CCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            45566677778899999999999998 88   889999998876643211          12     2344556889999


Q ss_pred             eEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131        118 IYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       118 ~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      .|.|.+.+..|...+..+.+.|...|+
T Consensus        86 ~Y~C~~~n~~g~~~~~~~~l~V~~~~~  112 (212)
T 2v9r_A           86 VYVCVARNYLGEAVSHDASLEVAILRD  112 (212)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECEECS
T ss_pred             EEEEEEECCCCceeecceEEEEEeccc
Confidence            999999998874345667777766443

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.17  E-value=9e-10  Score=67.91  Aligned_cols=79  Identities=13%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCC-----cEEEEee-cCcccCCCcc-----------eeeEEEccCCCCCCceEEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGP-----YLIAWFK-DGRQIPGRTS-----------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~-----~~~~w~~-~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +....+.+|+.+.|.|.+. .|   .     +.+.|++ ++.......+           ...|.|.++..+|.|.|.|.
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~p---~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   85 (202)
T 3bp6_B            9 KEVYTVDVGSSVSLECDFDRRE---CTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCL   85 (202)
T ss_dssp             CSEEEEETTSCEEEEEEECTTC------CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             CcCEEEeCCCcEEEEEEecCCC---CCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEE
Confidence            3456788999999999998 76   5     8999999 3332211111           36899999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEcCcC
Q psy11131        123 ARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      +.+..+ .....+.|.|..++
T Consensus        86 ~~~~~~-~~~~~~~l~V~~~~  105 (202)
T 3bp6_B           86 VICGAA-WDYKYLTVKVKASY  105 (202)
T ss_dssp             EEETTE-EEEEEEEEEEEBCC
T ss_pred             EEeCCC-cceEEEEEEecCCC
Confidence            999887 46778888887653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.16  E-value=5.8e-10  Score=68.98  Aligned_cols=86  Identities=17%  Similarity=0.226  Sum_probs=66.2

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC------------CCcc----eeeEEEccCCCCCCceE
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP------------GRTS----STSLVINPVGREDRGIY  119 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~------------~~~~----~~~l~~~~~~~~~~g~y  119 (150)
                      +...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.            ...+    ...|.|.++...|.|.|
T Consensus         4 v~~~~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y   80 (212)
T 1f97_A            4 VYTAQSDVQVPENESIKLTCTYSGFS---SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (212)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCS---SEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             EEecCCCeEEEcCCCEEEEeEeCCCC---CcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEE
Confidence            34456677889999999999999 78   99999998765521            1111    46799999999999999


Q ss_pred             EEEEEeCCCC-ceeeeEEEEEcCcCcc
Q psy11131        120 QCIARRSDGD-VAQGSAELQLGGTRNI  145 (150)
Q Consensus       120 ~C~~~~~~g~-~~~~~~~l~v~~~p~~  145 (150)
                      .|.+.+..|. .....+.|.|..+|..
T Consensus        81 ~C~~~~~~g~~~~~~~~~l~V~~~p~~  107 (212)
T 1f97_A           81 TCMVSEEGGQNYGEVSIHLTVLVPPSK  107 (212)
T ss_dssp             EEEEEETTSSSEEEEEEEEEEEBCCCC
T ss_pred             EEEEEccCCCcccEEEEEEEEEcCCCC
Confidence            9999998662 3466778888777654

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.16  E-value=2.5e-09  Score=75.03  Aligned_cols=119  Identities=13%  Similarity=0.226  Sum_probs=75.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE------ecCceEEeCCCcEEEecCCcEE-EEEEec--CCCCCCcE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV------STPYRVDVNPPLLSVHLDGSAN-FQCEIT--PYDSGPYL   87 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v------~~~~~~~~~~~~~~~~~g~~~~-l~C~~~--~p~~~~~~   87 (150)
                      +.|.|.+....|.|.|+|.+.|..+... ...+..      ..+|.+...+...   .|+.+. |.|.+.  +|.  ...
T Consensus       361 s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~--~i~  434 (512)
T 1zvo_C          361 SRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPP--NIL  434 (512)
T ss_pred             EEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCC--CcE
Confidence            5699999999999999999998765432 222221      1234443332222   688899 999998  441  247


Q ss_pred             EEEeecCcccCCCcc---------e-------eeEEEccCCCCCCceEEEEEEeCCCC-ceeeeEEEEEcC
Q psy11131         88 IAWFKDGRQIPGRTS---------S-------TSLVINPVGREDRGIYQCIARRSDGD-VAQGSAELQLGG  141 (150)
Q Consensus        88 ~~w~~~~~~~~~~~~---------~-------~~l~~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~v~~  141 (150)
                      +.|.+++..+.....         .       +.|.+.....++.|.|+|.|.+.... .......+.+..
T Consensus       435 v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~  505 (512)
T 1zvo_C          435 LMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY  505 (512)
T ss_pred             EEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence            899999876643210         1       23555555556699999999987652 233444555544

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.16  E-value=5.1e-10  Score=81.47  Aligned_cols=124  Identities=20%  Similarity=0.187  Sum_probs=86.0

Q ss_pred             eEEEcCC-CCCCCeEEEEEeccCCcceeEE-EEEEEe---cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEE-E
Q psy11131         18 ILAIEGV-TAEDSGTYRCSSSNIGGEATAE-VRLQVS---TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIA-W   90 (150)
Q Consensus        18 ~l~i~~~-~~~d~G~Y~C~~~~~~~~~~~~-~~l~v~---~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~-w   90 (150)
                      .+.|..+ ....++.|.|.+.+..|..... ..+.+.   .+|.+. .+....+.+|+.+.|.|.+. .|   .|.+. |
T Consensus       124 ~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P---~p~i~~W  199 (731)
T 2v5y_A          124 ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRT---VAGDRLW  199 (731)
T ss_dssp             EEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCC---CTTCEEE
T ss_pred             EEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc-cccceEEeCCCcEEEEEEeCCCC---CCceeEE
Confidence            4566655 2333589999887777754332 222221   344444 45567889999999999999 88   77777 7


Q ss_pred             e--ecCcccCCCc--------ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131         91 F--KDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus        91 ~--~~~~~~~~~~--------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .  +++..+....        ....|.|.++...|.|.|.|.+.|..|...+..+.|.|..+|..
T Consensus       200 ~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~  264 (731)
T 2v5y_A          200 LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVP  264 (731)
T ss_dssp             EEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCB
T ss_pred             EecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCC
Confidence            7  5665543211        14689999999999999999999999843666778888776653

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.15  E-value=4.4e-10  Score=68.52  Aligned_cols=83  Identities=19%  Similarity=0.195  Sum_probs=62.2

Q ss_pred             cCceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCC-ce
Q psy11131         53 TPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD-VA  131 (150)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~-~~  131 (150)
                      .+|.+...+.. .+.+|+.+.|.|.+..+   .+.+.|++++...  ......|.|.++..+|.|.|.|.+.|..|. ..
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~---~~~~~W~k~g~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   80 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPPG---VDLYRLEKLSSSR--YQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLP   80 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECSTT---CSEEEEEETTTCC--EESSSEEEESSCCGGGCEEEEEEEEETTEEBCC
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCCC---CCEEEEEECCccc--cCcccEEEECcCChhhCceEEEEEEcCCCccCC
Confidence            34555555554 68899999999998755   7899999988651  112568999999999999999999997752 33


Q ss_pred             eeeEEEEEcC
Q psy11131        132 QGSAELQLGG  141 (150)
Q Consensus       132 ~~~~~l~v~~  141 (150)
                      +..+.|.|.+
T Consensus        81 s~~~~l~V~~   90 (184)
T 2gi7_A           81 SDQLELVATG   90 (184)
T ss_dssp             CCCEEEEEES
T ss_pred             CCCEEEEecC
Confidence            5567777754

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.15  E-value=1.7e-10  Score=71.57  Aligned_cols=83  Identities=19%  Similarity=0.317  Sum_probs=64.5

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE-EEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~-~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      |.+...+....+.+|+.+.|.|.+. .|   .+. +.|++++..+...  ...|.|.++..+|.|.|.|.+.|.   ..+
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p---~~~~v~W~k~g~~l~~~--~~~L~i~~v~~~D~G~Y~C~a~n~---~~s   79 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSP---EDQSTQWFHNESLISSQ--ASSYFIDAATVDDSGEYRCQTQLS---TLS   79 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSS---SCCCEEEEETTEEESCC--SSEEEESSCCGGGCEEEEEEETTS---BCC
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCC---CCcEEEEEECCEEcccC--ccEEEEecccccCCEEEEEEeCCC---ccc
Confidence            4455555556789999999999998 76   554 9999999877654  378999999999999999999864   345


Q ss_pred             eeEEEEEcCcCcc
Q psy11131        133 GSAELQLGGTRNI  145 (150)
Q Consensus       133 ~~~~l~v~~~p~~  145 (150)
                      ..+.|.|..+|..
T Consensus        80 ~~~~l~V~~~p~~   92 (204)
T 3sgj_C           80 DPVQLEVHIGWLL   92 (204)
T ss_dssp             CCEEEEEECSSEE
T ss_pred             ccEEEEEecCceE
Confidence            6677777765543

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.15  E-value=5.9e-11  Score=66.12  Aligned_cols=86  Identities=17%  Similarity=0.294  Sum_probs=59.4

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCC-----CcceeeEEEccCCCCCCceEEEEEEeCC--
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-----RTSSTSLVINPVGREDRGIYQCIARRSD--  127 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~-----~~~~~~l~~~~~~~~~~g~y~C~~~~~~--  127 (150)
                      |.+...+.. .+.+|+.+.|.|.+...   ...+.|++++..+..     ......|.|..+..+|+|.|.|.+.+..  
T Consensus         6 P~i~~~p~~-~v~~G~~VtL~C~~~~~---~~~~~w~k~g~~~~~~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~~~   81 (105)
T 2vsd_A            6 PSLSLHPSQ-GVSLGDTVTLRCHLPRM---AAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPL   81 (105)
T ss_dssp             CEEEEESCS-SCCTTCEEEEEEECCSS---CEEEEEEETTEEEEEEEECTTCSEEEEEEECCSGGGCEEEEEEEEEETTE
T ss_pred             CEEEeCCCC-CcCcCCCEEEEEEcCCC---CcEEEEEECCccceeeeccCCCCEEEEEECCCCHHHCeEEEEEEEcCCCC
Confidence            344444443 47789999999998743   567889998765421     1125789999999999999999999853  


Q ss_pred             -CCceeeeEEEEEcCcCc
Q psy11131        128 -GDVAQGSAELQLGGTRN  144 (150)
Q Consensus       128 -g~~~~~~~~l~v~~~p~  144 (150)
                       ....+..+.|.|.+...
T Consensus        82 ~~s~~Sdpl~L~V~~~~~   99 (105)
T 2vsd_A           82 WTSNQSDPVELVLTIEGR   99 (105)
T ss_dssp             EECCCCCCEEECCC----
T ss_pred             cccCCCCCEEEEEEEecc
Confidence             22456778888776543

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.14  E-value=5.9e-10  Score=61.21  Aligned_cols=76  Identities=14%  Similarity=0.243  Sum_probs=57.7

Q ss_pred             cEEEecCCcEEEEEEec--CCCCCCcEEEEeecCc----ccCCC-----------c-ceeeEEEccCCCCCCceEEEEEE
Q psy11131         63 LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGR----QIPGR-----------T-SSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~----~~~~~-----------~-~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ...+..|+.+.|.|.+.  .+   .|.++|.+.+.    .+...           . ....|.|.++...|+|.|.|.|.
T Consensus        23 ~~tv~~G~~~~LeCpv~yc~~---rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn   99 (122)
T 1xau_A           23 KHSAWTGELFKIECPVKYCVH---RPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   99 (122)
T ss_dssp             EEEECTTSCEEEEEEEECSSS---CCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             cEEEecCCeEEEEeEecCCCC---CCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEee
Confidence            35678999999999997  57   89999998542    22111           1 14589999999999999999999


Q ss_pred             eCCCCceeeeEEEEEcC
Q psy11131        125 RSDGDVAQGSAELQLGG  141 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~  141 (150)
                      +..|...+....+.|.+
T Consensus       100 ~~~g~ieSHs~ti~V~~  116 (122)
T 1xau_A          100 FNSQVINSHSVTIHVRE  116 (122)
T ss_dssp             ETTEEEECCCEEEEEC-
T ss_pred             CCCCceeeeEEEEEEEe
Confidence            98875556666777765

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.14  E-value=4.4e-10  Score=71.01  Aligned_cols=77  Identities=29%  Similarity=0.499  Sum_probs=63.4

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDV  130 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~  130 (150)
                      +....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....         ...|.|.++...|.|.|.|.+.+..+ .
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~-~   97 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNP---TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-S   97 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSS---CCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE-E
T ss_pred             CcceEEcCCCeEEEEEEecCCC---CceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCC-c
Confidence            3457889999999999999 88   889999999877643321         45799999999999999999999887 5


Q ss_pred             eeeeEEEEEcC
Q psy11131        131 AQGSAELQLGG  141 (150)
Q Consensus       131 ~~~~~~l~v~~  141 (150)
                      ....+.+.|..
T Consensus        98 ~~~~~~l~V~~  108 (241)
T 3grw_A           98 IRQTYTLDVLE  108 (241)
T ss_dssp             EEEEEEEEEEC
T ss_pred             eEEEEEEEEec
Confidence            66777777765

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.13  E-value=1.2e-10  Score=72.42  Aligned_cols=76  Identities=14%  Similarity=0.226  Sum_probs=58.2

Q ss_pred             EEEecCCcEEEEEE---ec-CCCCCCcEEEEeecCcccCCC-------------------------cceeeEEEccCCCC
Q psy11131         64 LSVHLDGSANFQCE---IT-PYDSGPYLIAWFKDGRQIPGR-------------------------TSSTSLVINPVGRE  114 (150)
Q Consensus        64 ~~~~~g~~~~l~C~---~~-~p~~~~~~~~w~~~~~~~~~~-------------------------~~~~~l~~~~~~~~  114 (150)
                      +.+.+|+.+.|.|.   +. .|   .+.+.|++++......                         .....|.|.++..+
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p---~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   79 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGP---EIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS   79 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCST---TSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEEcCCCEEEEeeeeccCCCC---CcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHH
Confidence            46789999999995   34 67   8999999876432100                         00357999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      |+|.|.|.+.|..| .....+.|.|..||
T Consensus        80 D~G~Y~C~a~n~~g-~~~~~~~l~V~~p~  107 (203)
T 4fa8_A           80 HDGNYLCRMKLGET-EVTKQEHLSVVKPL  107 (203)
T ss_dssp             GCEEEEEEEEETTE-EEEEEEEEEEEEEE
T ss_pred             HCeEEEEEEEcCCC-cEEEEEEEEecCCc
Confidence            99999999999988 57777888876554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=2.1e-12  Score=86.25  Aligned_cols=109  Identities=14%  Similarity=0.150  Sum_probs=79.8

Q ss_pred             CCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC------
Q psy11131         28 DSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR------  100 (150)
Q Consensus        28 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~------  100 (150)
                      +.|.|+|...+.....    .+.+..+|.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+...      
T Consensus       136 ~~~~~~C~~~~~l~~l----~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~i~W~~~~~~~~~~~~~~~~  208 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAHM----PNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRG---LEQAGWILTELEQSATVMKSGG  208 (347)
T ss_dssp             GGGCCCCSSSSCSSCC----CCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSS---CCCCCEEESCCCSSEEECCCCC
T ss_pred             cccCCCCCCChHHhcC----CcccCCCCceeccCCceEEeCCCcEEEEEEEecCC---CCEEEEEcCCceeeccccccee
Confidence            5688999776632111    12233456666666667788999999999998 88   8999999987653211      


Q ss_pred             cceeeEEEccCCCCCCc-eEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131        101 TSSTSLVINPVGREDRG-IYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       101 ~~~~~l~~~~~~~~~~g-~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      .....|.|.++...|.| .|.|.+.|..| ..+..+.+.|..+|.
T Consensus       209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g-~~~~~~~l~V~~~P~  252 (347)
T 2ifg_A          209 LPSLGLTLANVTSDLNRKNVTCWAENDVG-RAEVSVQVNVSFPAS  252 (347)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTE-ECCEEECCCCBEEEE
T ss_pred             cccceEEEeeCChHHCCCeEEEEEEcCCC-CEEEEEEEEEcCCCe
Confidence            11678999999999999 99999999988 456677777766654

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.11  E-value=3.6e-10  Score=72.89  Aligned_cols=94  Identities=18%  Similarity=0.267  Sum_probs=48.8

Q ss_pred             CCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecC--ccc----
Q psy11131         24 VTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDG--RQI----   97 (150)
Q Consensus        24 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~--~~~----   97 (150)
                      ..+.|.+.|.|.+.+..|.......+.|      ...+..+.+.+|+.+.|.|....+   .+.+.|++..  ...    
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v------~~~p~~v~v~~G~~v~L~C~~~~~---~~~v~W~k~~~~~~~~~~~   73 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKV------IQTPRYLVKGQGQKAKMRCIPEKG---HPVVFWYQQNKNNEFKFLI   73 (270)
T ss_dssp             -------------------------CCC------EEECSEEEEETTSCEEEEEECCTT---CCEEEEEEECTTCCEEEEE
T ss_pred             chhhhHHHHHHHHhccCCccccccceeE------EeCCCeEEEcCCCCEEEEEEecCC---CceEEEEEECCCCCcEEEE
Confidence            4678999999999887655443333322      334556778999999999987655   6789998721  100    


Q ss_pred             --------------------C-CCcceeeEEEccCCCCCCceEEEEEEeC
Q psy11131         98 --------------------P-GRTSSTSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        98 --------------------~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                                          . .......|.|.++..+|+|.|.|.+.+.
T Consensus        74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~  123 (270)
T 3qib_D           74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLN  123 (270)
T ss_dssp             EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESC
T ss_pred             EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecC
Confidence                                0 0011457999999999999999999863

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.11  E-value=2.6e-10  Score=79.12  Aligned_cols=76  Identities=21%  Similarity=0.372  Sum_probs=62.3

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC---cc-----eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR---TS-----STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~---~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      +....+.+|+.+.+.|.+. .|   .|.+.|++++..+...   .+     ...+.|.++..+|+|.|.|.|.|..| ..
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P---~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~  467 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDP---PPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGG-ND  467 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEES---CCEEEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTE-EE
T ss_pred             cccEEEeCCCeEEEEEeccccC---CCEEEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCC-cE
Confidence            4556789999999999999 89   9999999988765421   11     45799999999999999999999999 56


Q ss_pred             eeeEEEEEc
Q psy11131        132 QGSAELQLG  140 (150)
Q Consensus       132 ~~~~~l~v~  140 (150)
                      +..+.+.|.
T Consensus       468 ~~~~~l~V~  476 (477)
T 2id5_A          468 SMPAHLHVR  476 (477)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            777777774

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.11  E-value=1.5e-09  Score=77.17  Aligned_cols=83  Identities=30%  Similarity=0.434  Sum_probs=70.1

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      .|.+...+....+.+|+.+.+.|.+. .|   .|.+.|++++..+.....        ...|.|..+..+|.|.|+|.|.
T Consensus       482 ~P~~~~~~~~~~v~~G~~~~~~~~v~g~P---~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~  558 (573)
T 3uto_A          482 QPRFIVKPYGTEVGEGQSANFYCRVIASS---PPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK  558 (573)
T ss_dssp             SCEEEECCCCEEECTTSCEEEEEEEECSS---CCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCccccCCCCcEEeCCCcEEEEEEEEccC---CCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEE
Confidence            35555566677889999999999999 99   999999999988765544        5689999999999999999999


Q ss_pred             eCCCCceeeeEEEEEc
Q psy11131        125 RSDGDVAQGSAELQLG  140 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~  140 (150)
                      |..| ..+..+.|.|.
T Consensus       559 N~~G-~~~~~v~l~Vt  573 (573)
T 3uto_A          559 NSYG-TKEEIVFLNVT  573 (573)
T ss_dssp             ETTE-EEEEEEEEEEC
T ss_pred             eCCC-cEEEEEEEEEC
Confidence            9999 67787887763

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.11  E-value=6.2e-09  Score=60.64  Aligned_cols=84  Identities=19%  Similarity=0.335  Sum_probs=60.3

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc--c--------------C-CCcc-----------eeeEEEccC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ--I--------------P-GRTS-----------STSLVINPV  111 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~--~--------------~-~~~~-----------~~~l~~~~~  111 (150)
                      +..+.+.+|+.+.|.|... .+....+.+.|++.+..  +              . ...+           ...|.|.++
T Consensus        13 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v   92 (139)
T 1pko_A           13 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV   92 (139)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccC
Confidence            4457789999999999987 44111478999886531  0              0 0011           347999999


Q ss_pred             CCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131        112 GREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      ..+|+|.|.|.+.+..+ .....+.|.|.+|+..
T Consensus        93 ~~~D~G~Y~C~v~~~~~-~~~~~~~L~V~~P~~~  125 (139)
T 1pko_A           93 RFSDEGGYTCFFRDHSY-QEEAAVELKVEDPFYW  125 (139)
T ss_dssp             CGGGCEEEEEEEEETTE-EEEEEEEEEEECTTTT
T ss_pred             CHHHCEEEEEEEEcCCC-ceEEEEEEEEecCcCc
Confidence            99999999999999877 5677888888865443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.10  E-value=2.3e-10  Score=69.19  Aligned_cols=82  Identities=21%  Similarity=0.298  Sum_probs=62.6

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE-EEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~-~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .+. +.|++++..+...  ...|.|.++..+|.|.|.|.+.|..+   
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p---~~~~~~W~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~n~~~---   78 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSP---EDNSTQWFHNESLISSQ--ASSYFIDAATVNDSGEYRCQTNLSTL---   78 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBT---TBCCCEEEETTEEEESS--CSEEEESSCCGGGCEEEEEECSSSCC---
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCC---CCcceEEEECCEEccCC--ceEEEEeCCCcccCEEEEEEeeCCcc---
Confidence            34555556666788999999999998 66   554 7899998876543  56899999999999999999987544   


Q ss_pred             eeeEEEEEcCcC
Q psy11131        132 QGSAELQLGGTR  143 (150)
Q Consensus       132 ~~~~~l~v~~~p  143 (150)
                      +..+.+.|..++
T Consensus        79 s~~~~l~V~~~~   90 (175)
T 1fnl_A           79 SDPVQLEVHIGW   90 (175)
T ss_dssp             CCCEEEEEECSS
T ss_pred             cccEEEEEeCCC
Confidence            455666666443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.10  E-value=2.7e-09  Score=66.44  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=63.0

Q ss_pred             EEEecCCcEEEEEEecCCCCCCc--EEEEeecCcccCCC---cceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131         64 LSVHLDGSANFQCEITPYDSGPY--LIAWFKDGRQIPGR---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ  138 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~~p~~~~~--~~~w~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~  138 (150)
                      +.+..|+++.|.|.+..|   .|  .+.|.+.+..+...   .....|.|.+++.+|.|.|.|.+.+..+ .....+.|.
T Consensus        17 v~v~~G~sv~L~C~a~~p---~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~~~~~~lt   92 (210)
T 1gsm_A           17 VAVALGASRQLTCRLACA---DRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR-TFQHTVQLL   92 (210)
T ss_dssp             EEEETTCCEEEEEEECCS---STTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEE
T ss_pred             eEEeCCCCEEEEEECCCC---CCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCC-ceEEEEEEE
Confidence            678899999999999744   44  99999865444211   1156899999999999999999999877 577889999


Q ss_pred             EcCcCccc
Q psy11131        139 LGGTRNIK  146 (150)
Q Consensus       139 v~~~p~~~  146 (150)
                      |..+|..+
T Consensus        93 V~~~P~~~  100 (210)
T 1gsm_A           93 VYAFPNQL  100 (210)
T ss_dssp             EEBCCSEE
T ss_pred             EEecCCCc
Confidence            99887543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.10  E-value=3.7e-10  Score=69.56  Aligned_cols=83  Identities=14%  Similarity=0.256  Sum_probs=61.9

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC-------cceeeEEEccCCCCCCceEEEEEEe
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR-------TSSTSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      +|.+...+. ..+.+|+.+.|.|.+. .|   . .+.|++++..+...       .....|.|.++...|.|.|.|.+.|
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~---~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQET---Q-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTC---C-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCC---c-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEEC
Confidence            344544444 3678999999999998 65   4 69999988765311       0156899999999999999999999


Q ss_pred             CC-C-CceeeeEEEEEcC
Q psy11131        126 SD-G-DVAQGSAELQLGG  141 (150)
Q Consensus       126 ~~-g-~~~~~~~~l~v~~  141 (150)
                      .. | ...+..+.|.|.+
T Consensus        80 ~~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTG   97 (198)
T ss_dssp             TTTEECCCCCCEEEEEEC
T ss_pred             CCCCcccCCccEEEEEcc
Confidence            76 4 1345667888876

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.09  E-value=1.2e-09  Score=61.36  Aligned_cols=75  Identities=16%  Similarity=0.169  Sum_probs=56.2

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC-------------------CCcc-----eeeEEEccCCCCCCceE
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP-------------------GRTS-----STSLVINPVGREDRGIY  119 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~-------------------~~~~-----~~~l~~~~~~~~~~g~y  119 (150)
                      .+.+|+.+.|.|... .+   ...+.|++......                   ...+     +.+|.|.+++.+|.|.|
T Consensus        11 ~~~~G~~v~L~~~~~p~~---~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Y   87 (111)
T 2qsq_A           11 NVAEGKEVLLLVHNLPQH---LFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFY   87 (111)
T ss_dssp             EEETTSCEEEEEESCCSS---EEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEE
T ss_pred             eeccCCCEEEEEeCCCCC---ceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEE
Confidence            678999999999864 44   56799988643210                   0111     57899999999999999


Q ss_pred             EEEEEeCCCCceeeeEEEEEcCc
Q psy11131        120 QCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       120 ~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      +|.+.+..+.....++.|.|..+
T Consensus        88 tc~v~~~~~~~~~~~~~L~V~~~  110 (111)
T 2qsq_A           88 TLHVIKSDLVNEEATGQFRVYPE  110 (111)
T ss_dssp             EEEEEETTSCCEEEEEEEEEECC
T ss_pred             EEEEEeCCCcEEEEEEEEEEecC
Confidence            99999986644667788877653

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.09  E-value=7.5e-10  Score=63.55  Aligned_cols=77  Identities=21%  Similarity=0.350  Sum_probs=55.0

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc-----------CC------Ccc-----------eeeEEEccCC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI-----------PG------RTS-----------STSLVINPVG  112 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~-----------~~------~~~-----------~~~l~~~~~~  112 (150)
                      ......+|+++.|.|... .+......+.|++.+...           ..      ..+           ...|.|.++.
T Consensus        13 ~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~   92 (125)
T 4gos_A           13 VASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQ   92 (125)
T ss_dssp             ECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCC
T ss_pred             ceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCC
Confidence            345678899999999986 331113479998754210           00      000           3479999999


Q ss_pred             CCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131        113 REDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       113 ~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      .+|+|.|.|.+.+..| ....++.|+|
T Consensus        93 ~~D~G~Y~C~v~~~~g-~~~~~v~LkV  118 (125)
T 4gos_A           93 LTDAGTYKCYIITSKG-KGNANLEYKT  118 (125)
T ss_dssp             GGGCEEEEEEEEETTE-EEEEEEEEEE
T ss_pred             hHHCEEEEEEEEeCCC-eEEEEEEEEE
Confidence            9999999999999888 5777777776

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.08  E-value=1.5e-09  Score=66.33  Aligned_cols=83  Identities=14%  Similarity=0.123  Sum_probs=60.7

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCC-------CcceeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-------RTSSTSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      |.+...+.. .+.+|+.+.|.|.+..+   .+.+.|++++..+..       ......|.|.++...|+|.|.|.+.+..
T Consensus         5 P~i~~~p~~-~v~~G~~v~L~C~~~~~---~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   80 (188)
T 1oll_A            5 PFIWAEPHF-MVPKEKQVTICCQGNYG---AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (188)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT---CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEeecCC-cCCCCCCEEEEEecCCC---CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence            444444544 68899999999998644   578999998865431       1115789999999999999999999865


Q ss_pred             CC-ceeeeEEEEEcC
Q psy11131        128 GD-VAQGSAELQLGG  141 (150)
Q Consensus       128 g~-~~~~~~~l~v~~  141 (150)
                      +. ..+..+.|.|.+
T Consensus        81 ~~~~~s~~~~l~V~~   95 (188)
T 1oll_A           81 LWSEPSNLLDLVVTE   95 (188)
T ss_dssp             EECCCCCCEEEEEES
T ss_pred             CCCCCCCceEEEecc
Confidence            42 235667777764

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.07  E-value=7.8e-10  Score=68.26  Aligned_cols=87  Identities=17%  Similarity=0.311  Sum_probs=65.3

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc------------CCCcc----eeeEEEccCCCCCCce
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI------------PGRTS----STSLVINPVGREDRGI  118 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~------------~~~~~----~~~l~~~~~~~~~~g~  118 (150)
                      .+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+            ....+    ...|.|.++...|.|.
T Consensus         6 ~i~~~~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~   82 (209)
T 1nbq_A            6 TVHSSEPEVRIPENNPVKLSCAYSGFS---SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT   82 (209)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCS---SEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSE
T ss_pred             EEEcCCCceEEEcCCCEEEEEEEeCCC---CcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcE
Confidence            444556667788999999999999 88   9999999876542            11111    3679999999999999


Q ss_pred             EEEEEEeCCCC-ceeeeEEEEEcCcCcc
Q psy11131        119 YQCIARRSDGD-VAQGSAELQLGGTRNI  145 (150)
Q Consensus       119 y~C~~~~~~g~-~~~~~~~l~v~~~p~~  145 (150)
                      |.|.+.+..|. ..+..+.|.|..+|..
T Consensus        83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~  110 (209)
T 1nbq_A           83 YTCMVSEEGGNSYGEVKVKLIVLVPPSK  110 (209)
T ss_dssp             EEEEEEETTSSCEECCEEECCEEBCCCC
T ss_pred             EEEEEecCCCCccceEEEEEEEecCCcC
Confidence            99999998652 3455677777766654

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.07  E-value=1.1e-09  Score=68.61  Aligned_cols=84  Identities=23%  Similarity=0.281  Sum_probs=61.6

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCC-------ccee--eEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-------TSST--SLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~-------~~~~--~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +|.+...+. ..+.+|+.+.|.|.+..+   .+.+.|++++..+...       ....  .|.|.++..+|+|.|.|.+.
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~~---~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIRE---AYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCTT---CSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCCC---CCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            455555555 468899999999998755   7899999987654311       1134  89999999999999999999


Q ss_pred             eCCCC-ceeeeEEEEEcC
Q psy11131        125 RSDGD-VAQGSAELQLGG  141 (150)
Q Consensus       125 ~~~g~-~~~~~~~l~v~~  141 (150)
                      |..+. ..+..+.|.|.+
T Consensus        85 n~~~~~~~s~~~~l~V~~  102 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTG  102 (218)
T ss_dssp             ETTTEEEECCCEEEEEEC
T ss_pred             cCCCceeecCCEEEEEcC
Confidence            97652 234567777765

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.07  E-value=1.7e-10  Score=69.77  Aligned_cols=81  Identities=21%  Similarity=0.374  Sum_probs=60.6

Q ss_pred             cCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCc
Q psy11131         53 TPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV  130 (150)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~  130 (150)
                      .+|.+...+....+.+|+.+.|.|.+. .+   .+ .+.|++++..+...  ...|.|.++..+|.|.|.|.+.+..+  
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~---~~~~i~W~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~~~~--   75 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFF---EVSSTKWFHNGSLSEET--NSSLNIVNAKFEDSGEYKCQHQQVNE--   75 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC-------CCEEEETTEECSCC--SSEEEECSCCGGGCEEEEEECTTSSC--
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCC---CcceEEEEECCeECCCC--ceEEEEeccceecCEEEEEEcCCccc--
Confidence            345555566666789999999999998 66   53 69999998877644  57899999999999999999987554  


Q ss_pred             eeeeEEEEEcC
Q psy11131        131 AQGSAELQLGG  141 (150)
Q Consensus       131 ~~~~~~l~v~~  141 (150)
                       +..+.+.|..
T Consensus        76 -s~~~~l~V~~   85 (176)
T 1f2q_A           76 -SEPVYLEVFS   85 (176)
T ss_dssp             -CCCEEEEEEC
T ss_pred             -cccEEEEEeC
Confidence             3455666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.06  E-value=3.7e-10  Score=77.99  Aligned_cols=85  Identities=18%  Similarity=0.286  Sum_probs=63.4

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcc-cCCCc---c-----eeeEEEccCCCCCCceEEEEEEe
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQ-IPGRT---S-----STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~-~~~~~---~-----~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      |.+...+....+.+|+.+.+.|.+. |   .|.+.|.+++.. +....   +     ...|.|.++..+|+|.|+|.|.|
T Consensus       353 P~i~~~~~~~~v~~G~~~~l~C~~~-p---~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N  428 (452)
T 3zyi_A          353 PFIMDAPRDLNISEGRMAELKCRTP-P---MSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTN  428 (452)
T ss_dssp             CCCSBCCCCEECCTTSCCEECCBCC-T---TSEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEEC
T ss_pred             cccccccccccccCCCEEEEEEeCC-C---CCcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEc
Confidence            3444455667889999999999997 8   899999985433 22110   1     46799999999999999999999


Q ss_pred             CCCCceeeeEEEEEcCcCc
Q psy11131        126 SDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       126 ~~g~~~~~~~~l~v~~~p~  144 (150)
                      ..| ....++.+.|.+.+.
T Consensus       429 ~~G-~~~~~~~l~v~~~~~  446 (452)
T 3zyi_A          429 VAG-NSNASAYLNVSTAGT  446 (452)
T ss_dssp             SSC-EEEEEEEEEC-----
T ss_pred             CCC-cEEEEEEEEEEcccc
Confidence            999 688888888877654

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.06  E-value=1.4e-09  Score=68.82  Aligned_cols=114  Identities=18%  Similarity=0.263  Sum_probs=68.8

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccCC------cc--eeEEEEEEEecCceEEeCCCcEEEecCCcEEE
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNIG------GE--ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF   74 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~------~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l   74 (150)
                      ..|+.+..      .+|.|.++..+|+|.|.|.+.+..      +.  -...+.|.|.........| .+.+... ...|
T Consensus        61 ~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P-~v~~~~~-~~~L  138 (229)
T 1hxm_A           61 KDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKP-SVFVMKN-GTNV  138 (229)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCC-EEEEEEE-TTEE
T ss_pred             CCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCC-cEEEcCC-CCeE
Confidence            46777752      479999999999999999987652      11  1123577776421111112 2222222 2488


Q ss_pred             EEEec--CCCCCC-cEEEEeecCcccCCCcc------eeeEEEccCCC-CCCceEEEEEEeCCC
Q psy11131         75 QCEIT--PYDSGP-YLIAWFKDGRQIPGRTS------STSLVINPVGR-EDRGIYQCIARRSDG  128 (150)
Q Consensus        75 ~C~~~--~p~~~~-~~~~w~~~~~~~~~~~~------~~~l~~~~~~~-~~~g~y~C~~~~~~g  128 (150)
                      .|.+.  .|   . ..+.|.++ ..+.....      ...+.+..... .+.+.|.|.+.+..+
T Consensus       139 ~C~~~g~~P---~~i~v~W~~~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          139 ACLVKEFYP---KDIRINLVSS-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             EEEEESCBS---SCCEEEEECS-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred             EEEEEEEeC---CCEEEEEecC-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence            99998  45   4 48999988 55432111      22334333333 577899999998754

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.06  E-value=7.4e-11  Score=75.13  Aligned_cols=109  Identities=14%  Similarity=0.231  Sum_probs=67.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEE----EecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCC-cEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ----VSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGP-YLIA   89 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~----v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~-~~~~   89 (150)
                      +.|.|......|.|.|.|.+.+..+.......+.    +..+|.+.+.+.......|..+.|.|.+.  .|   . ..+.
T Consensus        89 s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P---~~i~v~  165 (240)
T 4acp_A           89 SVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYP---SDIAVE  165 (240)
T ss_dssp             EEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS---SCCEEE
T ss_pred             EEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeC---CCcEEE
Confidence            5677877777789999999998755322222222    22445544333322223488899999998  55   4 4899


Q ss_pred             EeecCcccCCCc---------c----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         90 WFKDGRQIPGRT---------S----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        90 w~~~~~~~~~~~---------~----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      |.+++..+....         .    .+.|.+......+.+.|.|.+.+...
T Consensus       166 W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          166 WESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            999987653211         0    23455554444567899999998754

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.05  E-value=3e-09  Score=65.68  Aligned_cols=85  Identities=13%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCC---------CcceeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~---------~~~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +|.+...+. ..+.+|+.+.|.|.+..+   .+.+.|++++..+..         ......|.|.++..+|+|.|.|.+.
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~---~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWSDVM---FEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESSC---CSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEeccCC---CCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            445544444 567899999999998755   679999998875531         1115689999999999999999998


Q ss_pred             eCC----CCceeeeEEEEEcCc
Q psy11131        125 RSD----GDVAQGSAELQLGGT  142 (150)
Q Consensus       125 ~~~----g~~~~~~~~l~v~~~  142 (150)
                      +..    ....+..+.|.|.+.
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~  105 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGL  105 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECS
T ss_pred             cCCCCccccCCCCCEEEEeecc
Confidence            642    112355667777653

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=99.02  E-value=5.8e-09  Score=56.67  Aligned_cols=77  Identities=19%  Similarity=0.301  Sum_probs=60.2

Q ss_pred             cEEEecCCcEEEEEEec--CCCCCCcEEEEeecC----cccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         63 LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG----RQIPGRTS---------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~----~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ...+..|+.+.|.|++.  .+   .|.++|.+-+    ..+.....         ...|.|.++...|.|.|.|.|....
T Consensus        20 ~hsv~~G~~f~leCpv~yc~~---rP~VtWcKln~~~c~~L~~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~s   96 (120)
T 2aw2_A           20 EHSILAGDPFELECPVKYCAN---RPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS   96 (120)
T ss_dssp             EEEEETTSCEEEEEEEECSSS---CCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cceEecCCeEEEEccEEeccC---CCceEEEecCCceEEECccccccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCC
Confidence            35688999999999999  57   8999998754    33433221         3478899999999999999999998


Q ss_pred             CCceeeeEEEEEcCc
Q psy11131        128 GDVAQGSAELQLGGT  142 (150)
Q Consensus       128 g~~~~~~~~l~v~~~  142 (150)
                      |...+..+.+.|.+.
T Consensus        97 g~ieSHsvtI~Vt~~  111 (120)
T 2aw2_A           97 NLIESHSTTLYVTDV  111 (120)
T ss_dssp             EEEECCCEEEEEECG
T ss_pred             CcEEeeEEEEEEEec
Confidence            865666777777664

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.01  E-value=3.4e-09  Score=59.71  Aligned_cols=82  Identities=18%  Similarity=0.300  Sum_probs=56.7

Q ss_pred             CCcEEEecCCcEEEEEEec--CCCCC-CcEEEEeecCccc-------------CCCcc-------------eeeEEEccC
Q psy11131         61 PPLLSVHLDGSANFQCEIT--PYDSG-PYLIAWFKDGRQI-------------PGRTS-------------STSLVINPV  111 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~--~p~~~-~~~~~w~~~~~~~-------------~~~~~-------------~~~l~~~~~  111 (150)
                      +....+.+|+.+.|.|...  .+... ...+.|++.+...             ....+             ...|.|.++
T Consensus         7 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v   86 (118)
T 3udw_C            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSC
T ss_pred             CCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeec
Confidence            4446788999999999995  33100 1159999864221             00001             347999999


Q ss_pred             CCCCCceEEEEEEe-CCCCceeeeEEEEEcCcC
Q psy11131        112 GREDRGIYQCIARR-SDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       112 ~~~~~g~y~C~~~~-~~g~~~~~~~~l~v~~~p  143 (150)
                      ..+|+|.|.|.+.+ ..+ .....+.|.|.++|
T Consensus        87 ~~~D~G~Y~C~v~~~~~~-~~~~~~~L~V~~~P  118 (118)
T 3udw_C           87 RVEDEGNYTCLFVTFPQG-SRSVDIWLRVLAKP  118 (118)
T ss_dssp             CGGGCEEEEEEEEEETTE-EEEEEEEEEEEC--
T ss_pred             ChHHCeEEEEEEEECCCC-CccceEEEEEEeCC
Confidence            99999999999998 666 57778888887765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.00  E-value=3.6e-09  Score=71.12  Aligned_cols=78  Identities=21%  Similarity=0.282  Sum_probs=62.2

Q ss_pred             CCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCc----c----eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT----S----STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~----~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      +....+.+|+.+.+.|.+..|   .+.+.|++++..+....    +    ...|.|.++..+|+|.|+|.|.|..| ..+
T Consensus       253 ~~~v~v~~G~~~~l~C~~~gp---~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g-~~~  328 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQQ---GMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETF-NET  328 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSST---TCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSC-EEE
T ss_pred             ccCceecCCCeEEEEeEeeCC---CCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCC-ccE
Confidence            445678999999999998766   78999999765433221    1    35799999999999999999999988 677


Q ss_pred             eeEEEEEcCc
Q psy11131        133 GSAELQLGGT  142 (150)
Q Consensus       133 ~~~~l~v~~~  142 (150)
                      ..+.+.|...
T Consensus       329 ~~~~l~V~~~  338 (361)
T 2xot_A          329 LSVELKVYNF  338 (361)
T ss_dssp             EEEEEEEESS
T ss_pred             EEEEEEEEee
Confidence            8888888654

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.99  E-value=8.1e-09  Score=58.97  Aligned_cols=81  Identities=17%  Similarity=0.261  Sum_probs=54.7

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCC------------------Ccc-----------eeeEEEc
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG------------------RTS-----------STSLVIN  109 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~------------------~~~-----------~~~l~~~  109 (150)
                      .|..+.+.+|+++.|.|... .+......+.|++.......                  ..+           ...|.|.
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   85 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   85 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEEC
Confidence            35567788999999999987 44211356889874321000                  000           3469999


Q ss_pred             cCCCCCCceEEEEEEe-CCCCceeeeEEEEEcC
Q psy11131        110 PVGREDRGIYQCIARR-SDGDVAQGSAELQLGG  141 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~-~~g~~~~~~~~l~v~~  141 (150)
                      ++..+|+|.|.|.+.+ ..| .....+.|.|.+
T Consensus        86 ~v~~~DsG~Y~C~v~t~~~g-~~~~~~~L~VlE  117 (123)
T 4gjt_B           86 NAVQADEGEYECRVSTFPAG-SFQARLRLRVLE  117 (123)
T ss_dssp             SCCSSSCSEEEEEEEESSSC-EEEEEEEEEC--
T ss_pred             CCChHHCEEEEEEEEECCCC-eEEeEEEEEEEE
Confidence            9999999999999876 455 566777777765

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.99  E-value=1.8e-09  Score=64.74  Aligned_cols=81  Identities=20%  Similarity=0.381  Sum_probs=60.8

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      .+...+....+.+|+.+.|.|.+. .|.  .+.+.|++++..+...  ...+.+.++...|.|.|.|.+.+...   +..
T Consensus         6 ~i~~~p~~~~v~~G~~v~l~C~~~~~p~--~~~~~W~~~g~~~~~~--~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~   78 (170)
T 3ry4_A            6 VLKLEPPWINVLQEDSVTLTCQGARSPE--SDSIQWFHNGNLIPTH--TQPSYRFKANNNDSGEYTCQTGQTSL---SDP   78 (170)
T ss_dssp             EEEEESCCSEEETTCEEEEEEESCCCSS--SSCEEEEETTEECTTC--CSSEEEEECCGGGCEEEEEEETTSBC---CCC
T ss_pred             EEEeCCCCeEEECCCcEEEEEEecCCCC--cceEEEEECCeEcccC--ccceEEEecccccCeEEEEEEeCCCc---eEe
Confidence            344455556788999999999998 541  5789999999887654  34667788999999999999986433   455


Q ss_pred             EEEEEcCcC
Q psy11131        135 AELQLGGTR  143 (150)
Q Consensus       135 ~~l~v~~~p  143 (150)
                      +.+.|..++
T Consensus        79 ~~l~v~~~~   87 (170)
T 3ry4_A           79 VHLTVLFEW   87 (170)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEECCc
Confidence            677776654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.98  E-value=1.1e-09  Score=61.12  Aligned_cols=51  Identities=25%  Similarity=0.355  Sum_probs=41.4

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ++..+.++.+..    .+|.|.++..+|+|.|+|.+.|..|..+..+.|.|.++|
T Consensus        53 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           53 QLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             ECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             cccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence            455566666543    479999999999999999999999999999999998754

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.97  E-value=1.5e-08  Score=56.43  Aligned_cols=66  Identities=17%  Similarity=0.372  Sum_probs=50.2

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--c---c---------CCCcc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--Q---I---------PGRTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~---~---------~~~~~--------~~~l~~~~~~~~~  115 (150)
                      ..|....+.+|+.+.|.|.+. .|   .+.+.|++...  .   +         ....+        ...|.|.++..+|
T Consensus         6 q~p~~~~~~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 1jhl_L            6 QSPSYLVASPGETITINCRASKSI---SKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             ccCCeeEEcCCCCEEEEeEECCCC---CceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHH
Confidence            345667889999999999998 87   78999987531  1   0         00111        3579999999999


Q ss_pred             CceEEEEEEeCC
Q psy11131        116 RGIYQCIARRSD  127 (150)
Q Consensus       116 ~g~y~C~~~~~~  127 (150)
                      +|.|.|.+.|..
T Consensus        83 sG~Y~C~~~n~~   94 (108)
T 1jhl_L           83 FAMYICQQHNEY   94 (108)
T ss_dssp             CSEEEEEECSSS
T ss_pred             CEEEEEEEccCC
Confidence            999999998753

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.97  E-value=4.4e-09  Score=59.80  Aligned_cols=80  Identities=23%  Similarity=0.402  Sum_probs=57.2

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCC-CCcEEEEeecCcc-------c--------------CCCcc-----------eeeE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDS-GPYLIAWFKDGRQ-------I--------------PGRTS-----------STSL  106 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~-~~~~~~w~~~~~~-------~--------------~~~~~-----------~~~l  106 (150)
                      +....+.+|+.+.|.|... .+.. ..+.+.|++.+..       +              ....+           ...|
T Consensus        12 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL   91 (126)
T 1eaj_A           12 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASI   91 (126)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCE
T ss_pred             CceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEE
Confidence            3456788999999999987 5411 0257999875421       0              00011           2579


Q ss_pred             EEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        107 VINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       107 ~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      .|.++..+|+|.|.|.+.+..+ .....+.|.|..
T Consensus        92 ~I~~v~~~D~G~Y~C~v~~~~~-~~~~~~~L~V~~  125 (126)
T 1eaj_A           92 NVTNLQLSDIGTYQCKVKKAPG-VANKKIHLVVLV  125 (126)
T ss_dssp             EECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEC
T ss_pred             EECcCChHHCeEEEEEEEcCCc-cCCcEEEEEEEc
Confidence            9999999999999999999877 567778887764

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.97  E-value=4.5e-09  Score=59.54  Aligned_cols=83  Identities=19%  Similarity=0.326  Sum_probs=58.4

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCC-------------Ccc-----eeeEEEccCCCCCCceEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG-------------RTS-----STSLVINPVGREDRGIYQC  121 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~-------------~~~-----~~~l~~~~~~~~~~g~y~C  121 (150)
                      +....+.+|+.+.|.|... .+ .....+.|++.+..+..             ..+     ...|.|.++..+|.|.|.|
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~-~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C   88 (117)
T 3q0h_A           10 TGNISAEKGGSIILQCHLSSTT-AQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFC   88 (117)
T ss_dssp             SCCEEEETTCCEEECEEEESCC-CEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEE
T ss_pred             cCCEEEecCCCEEEEEEecCCC-CCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEE
Confidence            4457788999999999987 32 11457899886432110             011     3579999999999999999


Q ss_pred             EEEe-CCCCceeeeEEEEEcCcCcc
Q psy11131        122 IARR-SDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       122 ~~~~-~~g~~~~~~~~l~v~~~p~~  145 (150)
                      .+.+ ..| .....+.|.|.+||.+
T Consensus        89 ~v~~~~~g-~~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           89 IYHTYPDG-TYTGRIFLEVLESSVA  112 (117)
T ss_dssp             EEEEETTC-CEEEEEEEEEECC---
T ss_pred             EEEECCCC-CeEEEEEEEEEccCcc
Confidence            9764 556 5678889999887754

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.96  E-value=1.4e-08  Score=63.68  Aligned_cols=78  Identities=18%  Similarity=0.328  Sum_probs=54.0

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC-----------C------Cc-----------ceeeEEEccCC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP-----------G------RT-----------SSTSLVINPVG  112 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~-----------~------~~-----------~~~~l~~~~~~  112 (150)
                      ..+.+.+|+.+.|.|.+. .+......+.|++++....           .      ..           ....|.|.++.
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            346788999999999987 4411134799988653210           0      00           03579999999


Q ss_pred             CCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131        113 REDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus       113 ~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      .+|.|.|.|.+.|..| .....+.+.+.
T Consensus        92 ~~D~G~Y~C~a~n~~~-~~~~~v~~~~~  118 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDF-YEKALVELKVA  118 (226)
T ss_dssp             GGGCEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             hHHCeeEEEEEECCCc-EEEEEEEEeec
Confidence            9999999999999877 45555555443

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.96  E-value=8.2e-10  Score=58.38  Aligned_cols=59  Identities=22%  Similarity=0.453  Sum_probs=47.3

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccC-CCCCCceEEEEEEe
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPV-GREDRGIYQCIARR  125 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~~~~~g~y~C~~~~  125 (150)
                      |.......|+++.|.|.+. .|   .  +.|.+++..+.... ...|.|.++ ..+|+|.|.|.+.+
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P---~--i~W~kdg~~l~~~~-~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDE---N--LKWEKNGQELPQKH-DKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCS---S--CEEEETTEECTTCC-SSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCCCC---c--EEEEECCEECcCCC-CCEEEECccCccCcCEEEEEEEcc
Confidence            3445567899999999998 66   4  99999998876442 568999996 77999999999864

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.96  E-value=6.8e-09  Score=64.41  Aligned_cols=80  Identities=24%  Similarity=0.377  Sum_probs=57.7

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--cc----------CC--Ccc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--QI----------PG--RTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~~----------~~--~~~--------~~~l~~~~~~~~~  115 (150)
                      ..+....+.+|+.+.|.|.+. .|   .+.+.|++++.  .+          ..  ..+        ...|.|.++..+|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            6 QSPATLSVTPGNSVSLSCRASQSI---GNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (213)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCccEEEeCCCcEEEEEECCCCC---CCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhh
Confidence            345667789999999999998 87   78899987432  11          00  011        2489999999999


Q ss_pred             CceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        116 RGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       116 ~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      .|.|.|.+.+..+........+.|..
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           83 FGMYFCQQSNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CEEEEEeeecCCcceeCCCEEEEEec
Confidence            99999999987763333345666655

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.96  E-value=5.6e-09  Score=63.28  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=57.4

Q ss_pred             EEEecCCcEEEEEEe-c--CCCCCCcEEEEeecCcccC----------CCcc-----eeeEEEccCCCCCCceEEEEEEe
Q psy11131         64 LSVHLDGSANFQCEI-T--PYDSGPYLIAWFKDGRQIP----------GRTS-----STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~-~--~p~~~~~~~~w~~~~~~~~----------~~~~-----~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      +.+.+|+.+.|.|.. .  .+   .+.+.|++++..+.          ...+     ...|.|.++..+|+|.|.|.+.|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~---~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDD---IDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTT---EEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccc---cccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEe
Confidence            457889999999943 2  44   67999999875321          1111     34699999999999999999999


Q ss_pred             CCCCc-eeeeEEEEEcCcC
Q psy11131        126 SDGDV-AQGSAELQLGGTR  143 (150)
Q Consensus       126 ~~g~~-~~~~~~l~v~~~p  143 (150)
                      ..|.. ....+.|.|..++
T Consensus        83 ~~g~~~~~~~~~l~V~~~~  101 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMV  101 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCC
T ss_pred             CCCCEEEEEEEEEEEeCCC
Confidence            98843 3667788887653

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=98.95  E-value=7.2e-08  Score=61.84  Aligned_cols=120  Identities=16%  Similarity=0.313  Sum_probs=79.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec--CceEEe-CCCcEEEecCCcEEEEEEe--c--CC--CCCCcE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST--PYRVDV-NPPLLSVHLDGSANFQCEI--T--PY--DSGPYL   87 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~--~~~~~~-~~~~~~~~~g~~~~l~C~~--~--~p--~~~~~~   87 (150)
                      +.|.|..++..|+|.|+|.+.+..|.......+.|..  .+.+.. .|.......+..+.|.+.+  .  .|  ......
T Consensus        52 ~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yT  131 (304)
T 3shs_A           52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELH  131 (304)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCE
T ss_pred             ceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCce
Confidence            5789999999999999999988766543333333332  222322 3444555667788888877  2  11  000369


Q ss_pred             EEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCC-CceeeeEEEEE
Q psy11131         88 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG-DVAQGSAELQL  139 (150)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g-~~~~~~~~l~v  139 (150)
                      +.|++++..+..   ...+.+......+.|.|.|.+++..+ ...+....+.+
T Consensus       132 YQWyKngt~Isg---Aq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~  181 (304)
T 3shs_A          132 YSWSKGEDVIDT---TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIML  181 (304)
T ss_dssp             EEEEETTEEEES---SSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEE
T ss_pred             eEEeeCCeEccC---ccccceeeEEecCCeEEEEEEEcCCCCcccccceEEEE
Confidence            999999987642   23567777788899999999998866 33444444444

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.95  E-value=7.4e-09  Score=64.32  Aligned_cols=83  Identities=17%  Similarity=0.306  Sum_probs=55.6

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCC-------------------------------CcceeeEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG-------------------------------RTSSTSLVI  108 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~-------------------------------~~~~~~l~~  108 (150)
                      +..+.+.+|+.+.|.|.+. .+......+.|++++..+..                               ......|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            3456788999999999998 55100125899986543210                               000357999


Q ss_pred             ccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        109 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      .++..+|+|.|.|.+.+..+........+.+..+|
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~  122 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQP  122 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCC
Confidence            99999999999999998776444444445554443

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.94  E-value=1.9e-08  Score=64.60  Aligned_cols=85  Identities=14%  Similarity=0.208  Sum_probs=61.0

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCC---------CcceeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~---------~~~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +|.+...+. ..+.+|+.+.|.|.+..+   .+.+.|++++..+..         ......|.|.++..+|+|.|.|.+.
T Consensus         7 kP~i~~~P~-~~V~~G~~VtL~C~~~~~---~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSEETVILQCWSDVR---FQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCEECCBSC-SEEESSCCEEEEEEESSC---CSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCEEEEcCC-CEecCCCCEEEEEecCCC---CcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            444444444 567899999999998744   678999998875421         1115689999999999999999998


Q ss_pred             eCC----CCceeeeEEEEEcCc
Q psy11131        125 RSD----GDVAQGSAELQLGGT  142 (150)
Q Consensus       125 ~~~----g~~~~~~~~l~v~~~  142 (150)
                      +..    ....+..+.|.|.+.
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~  104 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGL  104 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECS
T ss_pred             ccCCCccccccCCCEEEecccC
Confidence            642    123456677777653

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.94  E-value=1.3e-08  Score=57.93  Aligned_cols=86  Identities=13%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             CCCcEEEecCCcEEEEEEec-C-CCCCCcEEEEeecCcc------c------------C--CCcc----------eeeEE
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAWFKDGRQ------I------------P--GRTS----------STSLV  107 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~~~------~------------~--~~~~----------~~~l~  107 (150)
                      .+..+.+.+|+.+.|.|... . +....+.+.|++.+..      +            .  ...+          ...|.
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (124)
T 1neu_A            5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (124)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEE
Confidence            34566788999999999985 3 1111678999874320      0            0  0111          25799


Q ss_pred             EccCCCCCCceEEEEEEeCCCC-ceeeeEEEEEcCcCcc
Q psy11131        108 INPVGREDRGIYQCIARRSDGD-VAQGSAELQLGGTRNI  145 (150)
Q Consensus       108 ~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~v~~~p~~  145 (150)
                      |.++..+|+|.|.|.+.+..+. .....+.|.|.++|+.
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p~~  123 (124)
T 1neu_A           85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPT  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC----
T ss_pred             EccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCCCC
Confidence            9999999999999999987653 2466788888887763

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.94  E-value=4.9e-09  Score=65.04  Aligned_cols=78  Identities=19%  Similarity=0.288  Sum_probs=57.9

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC------------CCcc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP------------GRTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~------------~~~~--------~~~l~~~~~~~~~  115 (150)
                      ..+ ...+.+|+.+.|.|.+. .|   .+.+.|++.  +....            ...+        ...|.|.++..+|
T Consensus         6 ~~~-~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (213)
T 3mj8_L            6 QPP-LVSVALGQKATITCSGDKLS---DVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGD   81 (213)
T ss_dssp             CCS-EEEEETTSCEEEEEECSSTT---TSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCC-cEEEeCCCCEEEEEEcCCCC---CceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhh
Confidence            344 67889999999999999 88   899999873  21110            0001        3569999999999


Q ss_pred             CceEEEEEEeCCC--CceeeeEEEEEc
Q psy11131        116 RGIYQCIARRSDG--DVAQGSAELQLG  140 (150)
Q Consensus       116 ~g~y~C~~~~~~g--~~~~~~~~l~v~  140 (150)
                      .|.|.|.+.+..+  ........|.|.
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~  108 (213)
T 3mj8_L           82 EADYYCQSWDGTNSAWVFGSGTKVTVL  108 (213)
T ss_dssp             CEEEEEEEEETTTTEEEEBCCEEEEEE
T ss_pred             CEEEEEEeccCCcceeEEcCceEEEEe
Confidence            9999999999876  234555677776

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.94  E-value=1.8e-08  Score=56.05  Aligned_cols=86  Identities=16%  Similarity=0.213  Sum_probs=61.8

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccC-----C-----CcceeeEEEccCCCCCCceEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP-----G-----RTSSTSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      +|.+...+.. .+..|+.+.|.|.....   ...+.|++++....     .     ......|.|..+...|.|.|.|.+
T Consensus         9 kPsL~a~P~~-vv~~G~~VtL~C~~~~~---~~~f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C~~   84 (106)
T 3kgr_A            9 RPSISAEPGT-VIPLGSHVTFVCRGPVG---VQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIY   84 (106)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEECTT---CCEEEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEEccCC---CcEEEEEECCCccccccccccccCCCCcceEEEecCCCcCCCceEEEEe
Confidence            3444444443 57889999999998733   56799999886541     1     111568999999999999999999


Q ss_pred             EeCCC-CceeeeEEEEEcCcC
Q psy11131        124 RRSDG-DVAQGSAELQLGGTR  143 (150)
Q Consensus       124 ~~~~g-~~~~~~~~l~v~~~p  143 (150)
                      .+..+ ...+..+.|.|.+.+
T Consensus        85 ~~~~~~S~~Sdpl~L~Vtg~~  105 (106)
T 3kgr_A           85 YKPPKWSEQSDYLELLVKEAA  105 (106)
T ss_dssp             EETTEECCCCCCEEEEEECC-
T ss_pred             eCCCcccCCCCCEEEEEeCCC
Confidence            88642 346778888887643

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.93  E-value=1.2e-08  Score=64.99  Aligned_cols=84  Identities=14%  Similarity=0.119  Sum_probs=61.3

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCC-------CcceeeEEEccCCCCCCceEEEEEEeC
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-------RTSSTSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +|.+...+.. .+.+|+.+.|.|.+..+   ...+.|++++..+..       ......|.|.++..+|+|.|.|.+.+.
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~~---~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNYG---AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT---CCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCCC---CcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            4455555554 68899999999998744   578999998865421       111568999999999999999999886


Q ss_pred             CCC-ceeeeEEEEEcC
Q psy11131        127 DGD-VAQGSAELQLGG  141 (150)
Q Consensus       127 ~g~-~~~~~~~l~v~~  141 (150)
                      .+. ..+..+.|.|.+
T Consensus        83 ~~~s~~S~~~~L~V~~   98 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTE   98 (242)
T ss_dssp             TEECCCCCCEEEEEEC
T ss_pred             CccccCCcceEEEeec
Confidence            431 235667777764

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.93  E-value=8e-09  Score=65.62  Aligned_cols=86  Identities=19%  Similarity=0.265  Sum_probs=61.1

Q ss_pred             CCCcEEEecCCcEEEEEEec-CC--CCCCcEEEEeecCcccCC-----------------Ccc---------eeeEEEcc
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PY--DSGPYLIAWFKDGRQIPG-----------------RTS---------STSLVINP  110 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p--~~~~~~~~w~~~~~~~~~-----------------~~~---------~~~l~~~~  110 (150)
                      .+....+.+|+.+.|.|.+. .|  ......+.|++++.....                 ...         ...|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            34556788999999999997 55  101225999886322110                 000         34599999


Q ss_pred             CCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131        111 VGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       111 ~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      +..+|.|.|.|.+.+..+ .....+.|.|..+|.+.
T Consensus        89 v~~~D~G~Y~C~~~~~~~-~~~~~~~L~V~~~P~v~  123 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPL-KAQGTVQLEVVASPASR  123 (248)
T ss_dssp             CCGGGCEEEEEEEEETTE-EEEEEEEEEEEBCCEEE
T ss_pred             CCHHHCeEEEEEEEeCCc-cceeEEEEEEecCCceE
Confidence            999999999999999877 56777888888766543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.93  E-value=1.1e-08  Score=63.52  Aligned_cols=79  Identities=16%  Similarity=0.322  Sum_probs=56.8

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC--------------CCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP--------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~--------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ...+....+.+|+.+.|.|.+. .|   .+.+.|++......              ...+        ...|.|.++..+
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            5 TQSPSSLPASLGDRVTINCQASQDI---SNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EeCCCEEEecCCCcEEEEEEeCCCc---CceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            3345667889999999999999 87   89999987321100              0011        347999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEE
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      |+|.|.|.+.+..+........|.|
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             cCEEEEEecccCCceEEcCCceEEE
Confidence            9999999998865433444455666

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.92  E-value=1.6e-08  Score=62.83  Aligned_cols=60  Identities=12%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             cEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         63 LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      ...+.+|..+.|.|.+.  .|   .|.+.|++++..+.....          ...|.|.++..+|.|.|+|.+.|
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P---~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSG---NAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCS---CCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCC---CCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            45688999999999986  68   899999999988754332          23699999999999999999999

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.92  E-value=6.5e-09  Score=64.18  Aligned_cols=77  Identities=14%  Similarity=0.141  Sum_probs=58.4

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCC-------------------Ccc-----eeeEEEccCCCCCCce
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG-------------------RTS-----STSLVINPVGREDRGI  118 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~-------------------~~~-----~~~l~~~~~~~~~~g~  118 (150)
                      ..+.+|+.+.|.|... .+   .+.+.|++++.....                   ..+     ...|.|.++...|.|.
T Consensus         9 ~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~   85 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLA---LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGV   85 (208)
T ss_dssp             SEEETTCCEEEEEECCCSS---CSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEE
T ss_pred             ceeecCCcEEEEEeCCCCC---ceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeE
Confidence            4678999999999977 77   889999976432110                   001     2479999999999999


Q ss_pred             EEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        119 YQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       119 y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      |.|.+.+..+......+.|.|..++
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~~  110 (208)
T 3r4d_A           86 YTLDMTDENYRRTQATVRFHVHQPV  110 (208)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             EEEEEEcccCceeEEEEEEEeccCC
Confidence            9999998864456777788887654

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.91  E-value=8.7e-09  Score=58.72  Aligned_cols=80  Identities=18%  Similarity=0.190  Sum_probs=59.0

Q ss_pred             cEEEecCCcEEEEEEec--CCCCCCcEEEEeecCc-cc------------C-CCcc------eeeEEEccCCCCCCceEE
Q psy11131         63 LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGR-QI------------P-GRTS------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~-~~------------~-~~~~------~~~l~~~~~~~~~~g~y~  120 (150)
                      ...+.+|+.+.|.|...  .+   ...+.|++... .+            . ...+      ...|.|.+++.+|+|.|.
T Consensus        13 pv~~~~G~~VtL~c~~~~~~~---~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG~Y~   89 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPEN---YKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYI   89 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCSS---EEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCSEEE
T ss_pred             EEEEEeCCCEEEeCCCCCCCc---eeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCeEEE
Confidence            35788999999999874  44   67899988642 10            0 0001      468999999999999999


Q ss_pred             EEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131        121 CIARRSDGDVAQGSAELQLGGTRNI  145 (150)
Q Consensus       121 C~~~~~~g~~~~~~~~l~v~~~p~~  145 (150)
                      |.+.+..+......+.|.|.++++.
T Consensus        90 c~v~~~~~~~~~~~~~L~V~~~~~~  114 (121)
T 2edo_A           90 MRVLKKTGNEQEWKIKLQVLDPVPK  114 (121)
T ss_dssp             EEEEETTTEEEECCEECEEECCSCC
T ss_pred             EEEEcCCCcEEEEEEEEEEECCCCC
Confidence            9999776545677888888876543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.90  E-value=9.9e-09  Score=64.31  Aligned_cols=81  Identities=27%  Similarity=0.438  Sum_probs=61.6

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCC-cEEEEeecCcccC-----------------C-----------CcceeeEEEc
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGP-YLIAWFKDGRQIP-----------------G-----------RTSSTSLVIN  109 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~-~~~~w~~~~~~~~-----------------~-----------~~~~~~l~~~  109 (150)
                      .|....+.+|+.+.|.|.+. .+   . +.+.|++++....                 .           ......|.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~   82 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTH---DHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLA   82 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCC---SEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEES
T ss_pred             CCCcEEEEcCCCEEEecccCCCC---CceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEc
Confidence            35567889999999999998 66   5 8999997544311                 0           0002459999


Q ss_pred             cCCCCCCceEEEEEEeCC-CCceeeeEEEEEcCcCc
Q psy11131        110 PVGREDRGIYQCIARRSD-GDVAQGSAELQLGGTRN  144 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~~~-g~~~~~~~~l~v~~~p~  144 (150)
                      ++..+|.|.|.|.+.+.. + .....+.|.|..+|.
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~-~~~~~~~l~V~~~p~  117 (231)
T 2pet_A           83 EAQVGDERDYVCVVRAGAAG-TAEATARLNVFAKPE  117 (231)
T ss_dssp             SCCGGGCEEEEEEEECGGGC-EEEEEEEEEEEBCCC
T ss_pred             ccCcccCceEEEEEEecCCC-ceEEEEEEEEEecCC
Confidence            999999999999999886 5 577788888877653

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.89  E-value=2.1e-08  Score=62.09  Aligned_cols=78  Identities=22%  Similarity=0.403  Sum_probs=56.6

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc------------CCCcc--------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI------------PGRTS--------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~------------~~~~~--------~~~l~~~~~~~~~~g  117 (150)
                      |....+.+|+.+.|.|.+. .|   .+.+.|+++.  ..+            ....+        ...|.|.++..+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESV---TSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA   83 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCcEEEcCCCCEEEEeeCCCcc---CCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCe
Confidence            6667889999999999998 77   7889998742  211            00111        248999999999999


Q ss_pred             eEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        118 IYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       118 ~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      .|.|.+.+..+........+.|..
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           84 IYFCQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEEEcCCCceeCCCEEEEEcC
Confidence            999999987663233344566654

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.88  E-value=2.8e-08  Score=55.78  Aligned_cols=81  Identities=20%  Similarity=0.320  Sum_probs=57.3

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc-----c-CC--------Ccc----------eeeEEEccCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ-----I-PG--------RTS----------STSLVINPVGRE  114 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~-----~-~~--------~~~----------~~~l~~~~~~~~  114 (150)
                      .|..+.+.+|+.+.|.|... ...  ...+.|++....     + ..        ..+          ...|.|.++..+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   84 (113)
T 1zox_A            7 GPEEVSGQEQGSLTVQCRYTSGWK--DYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMS   84 (113)
T ss_dssp             CCSEEEEETTSCEEEEEEECGGGT--TSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEeCCCcEEEEeECCCCcc--cceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHH
Confidence            35567889999999999987 431  346999875321     1 00        001          347999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      |+|.|.|.+.+... .....+.|.|..+|
T Consensus        85 DsG~Y~C~v~~~~~-~~~~~v~L~V~~~p  112 (113)
T 1zox_A           85 DAGIYWCGITKGGL-DPMFKVTVNIGPVP  112 (113)
T ss_dssp             GCEEEEEEECCSSS-CCEEEEEEEEECC-
T ss_pred             HCEEEEEeeEcCCC-CccEEEEEEEEcCC
Confidence            99999999987643 56777888887654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.88  E-value=8e-09  Score=69.44  Aligned_cols=65  Identities=18%  Similarity=0.093  Sum_probs=40.7

Q ss_pred             CceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEE
Q psy11131         10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLI   88 (150)
Q Consensus        10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~   88 (150)
                      .|+.+..++|.|.+++.+|+|.|+|.+.|..|..+..+.|.|...+           .+|+.+.+.|.+. .|   .|.+
T Consensus       294 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~-----------~~g~~~~l~C~~~g~P---~P~i  359 (361)
T 2xot_A          294 GSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFT-----------LHGHHDTLNAAADPWS---HPQF  359 (361)
T ss_dssp             SSEEEETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESSC-----------CC---------------------
T ss_pred             CceEeecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEeee-----------ccCCceEEEEEeCCCC---CCcc
Confidence            3666655899999999999999999999998988989999887532           5677899999998 88   6665

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.87  E-value=3.5e-09  Score=64.71  Aligned_cols=69  Identities=20%  Similarity=0.401  Sum_probs=53.1

Q ss_pred             EEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEcc-CCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINP-VGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~-~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ....|+.+.|.|.+..+   . .+.|++++..+.... ...|.|.+ +..+|+|.|.|.+.|..|. ....+.+.|
T Consensus        10 v~~~G~~v~L~C~~~~~---~-~i~W~k~g~~l~~~~-~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~~~v   79 (186)
T 1jbj_A           10 VSISGTSVELTCPLDSD---E-NLKWEKNGQELPQKH-DKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYLKARV   79 (186)
T ss_dssp             EEEETTEEEEECSSCCC---T-TCEEEETTEEECSCC-CSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEECCCC
T ss_pred             EEeCCcEEEEEEeCCCC---C-ceEEEECCEECCCCC-CCEEEECCCCccccCEEEEEEEEeCCCc-EEEEEEEEE
Confidence            34679999999998632   3 399999998876543 46899999 9999999999999998883 444444443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.87  E-value=9e-09  Score=63.22  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=59.4

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC---C-----------Cc----c-----eeeEEEccCCCCCC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP---G-----------RT----S-----STSLVINPVGREDR  116 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~---~-----------~~----~-----~~~l~~~~~~~~~~  116 (150)
                      |..+.+.+|+.+.|.|... .+.  .+.+.|++++..+.   .           ..    +     ...|.|.++..+|.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~   82 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEK--VNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT   82 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSC--CCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred             CeEEEEEecCeEEEeccCCCccc--ccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccC
Confidence            4556788999999999986 331  57999998764321   0           00    1     35799999999999


Q ss_pred             ceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        117 GIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       117 g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      |.|.|.+.+..+ .....+.|.|..++
T Consensus        83 G~Y~C~~~~~~~-~~~~~~~L~V~~~~  108 (193)
T 2if7_A           83 GSYRAQISTKTS-AKLSSYTLRILRQL  108 (193)
T ss_dssp             EEEEEEEECSSC-EEEEEEEEEEECCC
T ss_pred             ceEEEEEEecCC-CeEEEEEEEEEccC
Confidence            999999998887 45567788887654

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.86  E-value=1.3e-08  Score=55.34  Aligned_cols=51  Identities=29%  Similarity=0.446  Sum_probs=43.3

Q ss_pred             ecCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131          5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ++..+.++.+..+.|.|.+++.+|+|.|+|.+.|..|.....+.|.|.+++
T Consensus        39 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~   89 (95)
T 4hwu_A           39 HLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTDAA   89 (95)
T ss_dssp             EECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC-
T ss_pred             ECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeCCc
Confidence            445567778777899999999999999999999998888888888888653

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.86  E-value=2.2e-08  Score=60.68  Aligned_cols=73  Identities=21%  Similarity=0.407  Sum_probs=54.1

Q ss_pred             EEecCCcEEEEEEec-CCCCCCc--EEEEeecCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPY--LIAWFKDGRQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ  138 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~--~~~w~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~  138 (150)
                      .+.+|+.+.|.|.+. .|   .+  .+.|++++..+.....   ...+.+.  ..+|.|.|.|.+.|.    ....+.|.
T Consensus         9 ~v~~G~~v~l~C~~~~~~---~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~   79 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSA---TEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPE----PMGTANIQ   79 (184)
T ss_dssp             EEEETTEEEEEEEEESCS---SCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEEST----TSCEEEEE
T ss_pred             EEecCCCEEEEEECCCCC---CCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECC----cCcEEEEE
Confidence            567899999999988 66   55  9999999877654432   3355555  578999999999972    23567777


Q ss_pred             EcCcCccc
Q psy11131        139 LGGTRNIK  146 (150)
Q Consensus       139 v~~~p~~~  146 (150)
                      |..+|...
T Consensus        80 V~~~P~~~   87 (184)
T 3b5h_A           80 LHGPPRVK   87 (184)
T ss_dssp             ECCSCCCE
T ss_pred             EecCCcee
Confidence            87766543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.86  E-value=1.5e-08  Score=62.63  Aligned_cols=84  Identities=20%  Similarity=0.345  Sum_probs=61.3

Q ss_pred             CcEEEecCCcEEEEEEec-CCCC-CCcEEEEeec----------------CcccCC-----Ccc-----------eeeEE
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDS-GPYLIAWFKD----------------GRQIPG-----RTS-----------STSLV  107 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~-~~~~~~w~~~----------------~~~~~~-----~~~-----------~~~l~  107 (150)
                      ....+.+|+.+.|.|.+. .+.. ..+.+.|++.                +..+..     ..+           ...|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            446788999999999998 5411 0369999873                222211     000           35699


Q ss_pred             EccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131        108 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       108 ~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~  146 (150)
                      |.++..+|.|.|.|.+.+..| .....+.|.|..+|...
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~-~~~~~~~l~V~~~p~~~  125 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGT  125 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCCBSC
T ss_pred             EccCChhhCeEEEEEEEeCCC-ccccEEEEEEEcCCCCc
Confidence            999999999999999999888 56788889988876543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.86  E-value=2.9e-08  Score=61.39  Aligned_cols=71  Identities=17%  Similarity=0.122  Sum_probs=55.7

Q ss_pred             EEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         65 SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      ....++.+.|.|.+.  .|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|..+ .....
T Consensus        13 l~c~~~~~~l~C~~~~~~p---~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~-~~~~~   88 (212)
T 2r15_A           13 IQSTAEGIQLYSFVTYYVE---DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKT   88 (212)
T ss_dssp             EEECSSEEEEEEEBSSCCS---SCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSC-EEEEE
T ss_pred             EEEcCceEEEEEEEeccCC---CceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCc-ceEEE
Confidence            345678889999988  46   889999999988765443        24599999999999999999999877 45556


Q ss_pred             EEEEE
Q psy11131        135 AELQL  139 (150)
Q Consensus       135 ~~l~v  139 (150)
                      +.+.+
T Consensus        89 ~~l~v   93 (212)
T 2r15_A           89 VDLSG   93 (212)
T ss_dssp             EEECH
T ss_pred             EEEEE
Confidence            66544

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.85  E-value=7.7e-09  Score=63.35  Aligned_cols=66  Identities=17%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             CCCcEEEecCCcEEEEEE-ec-CCCCCC-cEEEEeecCcccCCC--cc------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         60 NPPLLSVHLDGSANFQCE-IT-PYDSGP-YLIAWFKDGRQIPGR--TS------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~-~~-~p~~~~-~~~~w~~~~~~~~~~--~~------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+....+.+|+.+.|.|. .. .|   . +.+.|++++..+...  ..      ...|.|.++..+|.|.|.|.+.+..+
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   90 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFP---DDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI   90 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEES---SCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGG
T ss_pred             CCceEEEECCCCEEEeccccccCC---CceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCC
Confidence            345678899999999999 66 77   7 999999988766321  11      56799999999999999999998665

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.84  E-value=1.9e-08  Score=61.37  Aligned_cols=78  Identities=18%  Similarity=0.202  Sum_probs=57.9

Q ss_pred             CcEEEecCCcEEEEEEec---CCCCCCcEEEEee--cCccc----------CCCcc-----eeeEEEccCCCCCCceEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT---PYDSGPYLIAWFK--DGRQI----------PGRTS-----STSLVINPVGREDRGIYQC  121 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~---~p~~~~~~~~w~~--~~~~~----------~~~~~-----~~~l~~~~~~~~~~g~y~C  121 (150)
                      ..+.+.+|+.+.|.|...   .+   .+.+.|.+  ++..+          ....+     ...|.|.++..+|+|.|.|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~---~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDD---IDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSS---EEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCc---CCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEE
Confidence            345678999999999543   34   68999999  77654          11111     4689999999999999999


Q ss_pred             EEEeCCCCce-eeeEEEEEcCc
Q psy11131        122 IARRSDGDVA-QGSAELQLGGT  142 (150)
Q Consensus       122 ~~~~~~g~~~-~~~~~l~v~~~  142 (150)
                      .+.|..|... ...+.|.|..+
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~  105 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQER  105 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECC
T ss_pred             EEEeCCCceeEEEEEEEEEcCc
Confidence            9999887432 35677777653

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.84  E-value=2.7e-08  Score=63.11  Aligned_cols=83  Identities=23%  Similarity=0.330  Sum_probs=57.4

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--ccC------------CCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--QIP------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~~~------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ...|....+.+|+.+.|.|.+. .|   .+.+.|+++..  ...            ...+        ...|.|.++..+
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            5 TQSPATLSVTPGNSVSLSCRASQSI---GNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (242)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEcCCeEEEcCCCcEEEEEEeCCCC---CceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence            3445667889999999999998 88   88999988531  110            0111        347999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      |+|.|.|.+.+..+........|.|..+|
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~  110 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITGGG  110 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcCCC
Confidence            99999999998754222344567776654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.83  E-value=7.8e-09  Score=64.37  Aligned_cols=77  Identities=12%  Similarity=0.103  Sum_probs=53.7

Q ss_pred             CcEEEecC--CcEEEEEEecCCCCCCcEEEEeec---CcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         62 PLLSVHLD--GSANFQCEITPYDSGPYLIAWFKD---GRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        62 ~~~~~~~g--~~~~l~C~~~~p~~~~~~~~w~~~---~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      ..+.+.+|  +.+.|.|.+..|   .+.+.|++.   +..+.....     ...|.|.++..+|.|.|.|.+.|..+...
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~p---~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSIS---NLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ   91 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSST---TCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred             eEEEEecCCCccEEEeeccCCC---CcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEE
Confidence            45678899  999999998766   688999874   444433221     35699999999999999999988544333


Q ss_pred             eeeEEEEEcC
Q psy11131        132 QGSAELQLGG  141 (150)
Q Consensus       132 ~~~~~l~v~~  141 (150)
                      +..+.+.|..
T Consensus        92 s~~~~l~v~~  101 (213)
T 2x1w_L           92 SIMYIVVVVG  101 (213)
T ss_dssp             CCCEEEEECB
T ss_pred             EEEEEEEEeC
Confidence            3346666643

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.82  E-value=3.7e-08  Score=60.79  Aligned_cols=83  Identities=16%  Similarity=0.207  Sum_probs=56.0

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-----------------------------ceeeEEEc
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-----------------------------SSTSLVIN  109 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-----------------------------~~~~l~~~  109 (150)
                      .+..+.+.+|+.+.|.|.+. .|....+.+.|++++..+....                             ....|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            35567889999999999998 6511013589998764322100                             03469999


Q ss_pred             cCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        110 PVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      ++..+|.|.|.|.+.+..+........+.+..+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~  117 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVP  117 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeee
Confidence            999999999999998866633444444444443

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.81  E-value=1.9e-08  Score=56.59  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             CCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCccc-----------------CCCcc----------eeeEEEccC
Q psy11131         61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI-----------------PGRTS----------STSLVINPV  111 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~-----------------~~~~~----------~~~l~~~~~  111 (150)
                      +..+.+.+|+.+.|.|...  ..   ...+.|++.....                 ....+          ...|.|.++
T Consensus         4 ~~~v~~~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   80 (116)
T 2or8_A            4 YVEVKGVVGHPVTLPCTYSTYRG---ITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENS   80 (116)
T ss_dssp             CEEEEEETTSCEEECCBCCCTTC---CCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSC
T ss_pred             cceEEEEeCCcEEEEEEeeCCCC---CcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCC
Confidence            3456788999999999986  33   5679998864110                 00000          357999999


Q ss_pred             CCCCCceEEEEEEeCCCCc-eeeeEEEEEc
Q psy11131        112 GREDRGIYQCIARRSDGDV-AQGSAELQLG  140 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~~g~~-~~~~~~l~v~  140 (150)
                      ..+|+|.|.|.+.+..+.. ....+.|.|.
T Consensus        81 ~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~  110 (116)
T 2or8_A           81 VESDSGLYCCRVEIPGWFNDQKVTFSLQVK  110 (116)
T ss_dssp             CGGGCEEEEEEECCSSTTCCEEEEEEEEEE
T ss_pred             CcccCEEEEEEEEcCCcccccEEEEEEEEC
Confidence            9999999999998765421 2445555553

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.81  E-value=3.5e-08  Score=61.12  Aligned_cols=74  Identities=18%  Similarity=0.309  Sum_probs=55.6

Q ss_pred             cEEEecCCcEEEEEEecCCCCCCcEEEEeec--CcccC------------CCcc--------eeeEEEccCCCCCCceEE
Q psy11131         63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKD--GRQIP------------GRTS--------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~--~~~~~------------~~~~--------~~~l~~~~~~~~~~g~y~  120 (150)
                      ...+.+|+.+.|.|.+. +   .+.+.|++.  +....            ...+        ...|.|.++..+|+|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~-~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT-S---NNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYY   84 (211)
T ss_dssp             EEEECTTCEEEEEEECC-C---SSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             eEEEcCCCCEEEEEEEC-C---CCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEE
Confidence            67788999999999997 7   889999984  22110            0011        347999999999999999


Q ss_pred             EEEEeCCC-CceeeeEEEEEc
Q psy11131        121 CIARRSDG-DVAQGSAELQLG  140 (150)
Q Consensus       121 C~~~~~~g-~~~~~~~~l~v~  140 (150)
                      |.+.+..+ ........|.|.
T Consensus        85 C~~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           85 CGSLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             EEEEETTTEEEECCCEEEEEC
T ss_pred             EEEecCCCceeECCCceEEEe
Confidence            99999876 234555677776

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.80  E-value=1.3e-07  Score=52.24  Aligned_cols=74  Identities=19%  Similarity=0.246  Sum_probs=55.9

Q ss_pred             EEEecCCcEEEEEEecCCCCCC----cEEEEeecCcccCC-----CcceeeEEEccCCCCCCceEEEEEEeCCC-Cceee
Q psy11131         64 LSVHLDGSANFQCEITPYDSGP----YLIAWFKDGRQIPG-----RTSSTSLVINPVGREDRGIYQCIARRSDG-DVAQG  133 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~~p~~~~----~~~~w~~~~~~~~~-----~~~~~~l~~~~~~~~~~g~y~C~~~~~~g-~~~~~  133 (150)
                      ..+..|+.+.|.| ....   .    ..+.|++++.....     ......|.|..+...|+|.|.|.+.+..+ ...+.
T Consensus        18 ~~v~~G~~VTL~C-~~~~---~~~~~~~f~l~k~g~~~~~~~~~~~~~~a~f~i~~vt~~~aG~Y~C~~~~~~~~S~~Sd   93 (102)
T 4esk_A           18 LMISQGTFVTVVC-SYSD---KHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSK   93 (102)
T ss_dssp             EEEETTCCEEEEE-ECTT---TGGGCCEEEEEETTEEEEEEECCSSCSEEEEEECSCCGGGCEEEEEEEEETTTEEEECC
T ss_pred             CcccCCCcEEEEE-CCCc---CCCcccEEEEEECCccccccccCCCCcceEEEeCcCCcccCeeEEEEEeCCCccccCcC
Confidence            4578899999999 7633   4    68999988764321     11157899999999999999999998765 24567


Q ss_pred             eEEEEEcC
Q psy11131        134 SAELQLGG  141 (150)
Q Consensus       134 ~~~l~v~~  141 (150)
                      .+.|.|.+
T Consensus        94 pl~L~VtG  101 (102)
T 4esk_A           94 TLELKVIK  101 (102)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEEe
Confidence            78887764

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.80  E-value=1.3e-09  Score=71.22  Aligned_cols=122  Identities=8%  Similarity=0.075  Sum_probs=22.5

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCcc--------eeEEEEEEEecCceEE--eCCCcEEEecCCcEEEEEEec-CCCCCCc
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGE--------ATAEVRLQVSTPYRVD--VNPPLLSVHLDGSANFQCEIT-PYDSGPY   86 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~--------~~~~~~l~v~~~~~~~--~~~~~~~~~~g~~~~l~C~~~-~p~~~~~   86 (150)
                      .|.+...+..|.+.|+|++.+..+.        .+....|.|+++|...  +.. ...+.+|+.+.|.|.+. .+.  .+
T Consensus       143 ~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~-p~~l~eG~~v~l~C~~~g~~P--~~  219 (291)
T 1mq8_A          143 TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-PRVLEVDTQGTVVCSLDGLFP--VS  219 (291)
T ss_dssp             EEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------------------
T ss_pred             EEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecC-CcCccCCCeEEEEEEcCCCCC--Cc
Confidence            4556555555566999999976441        3455678887764321  111 12577899999999999 540  32


Q ss_pred             --EEEEeecCcccCCCcc--eeeEEEccC---CCCC--CceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131         87 --LIAWFKDGRQIPGRTS--STSLVINPV---GRED--RGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus        87 --~~~w~~~~~~~~~~~~--~~~l~~~~~---~~~~--~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                        .+.|.+++..+.....  ...+.+...   ..++  .+.|.|.+.+... .......|.|+.-|
T Consensus       220 ~~~v~w~~~g~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~l~v~~~~  284 (291)
T 1mq8_A          220 EAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ-SQETLQTVTIYSFP  284 (291)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ccEEEEEECCEecCceeeecCCeEEEEEecceeEcCCCCEEEEEEEEeCCc-ceEEEEEEEEEcCC
Confidence              6889888887653211  223333322   2333  4567798886543 34456667777633

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.80  E-value=8.4e-08  Score=60.74  Aligned_cols=80  Identities=21%  Similarity=0.343  Sum_probs=59.4

Q ss_pred             CCCcEEEecCCcEEEEEEec----CCCCCCcEEEEeecCcccC------------------------------CCcc---
Q psy11131         60 NPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP------------------------------GRTS---  102 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~----~p~~~~~~~~w~~~~~~~~------------------------------~~~~---  102 (150)
                      .+....+.+|+.+.|.|.+.    .|   .+.+.|++++....                              ...+   
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQ---PPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCS---CCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCC---ceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            34467788999999999886    45   78999998764320                              0000   


Q ss_pred             ----eeeEEEccCCCCCCceEEEEEEeCCCCc----eeeeEEEEEcCc
Q psy11131        103 ----STSLVINPVGREDRGIYQCIARRSDGDV----AQGSAELQLGGT  142 (150)
Q Consensus       103 ----~~~l~~~~~~~~~~g~y~C~~~~~~g~~----~~~~~~l~v~~~  142 (150)
                          ...|.|.++..+|.|.|.|.+.+..+..    ....+.|.|..+
T Consensus        85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence                2489999999999999999999876632    245788888875

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.80  E-value=2e-08  Score=61.76  Aligned_cols=76  Identities=20%  Similarity=0.354  Sum_probs=56.8

Q ss_pred             EEEecCCcEEEEEEec-----CCCCCCcEEEEeecCcccCC-------------------CcceeeEEEccCCCCCCceE
Q psy11131         64 LSVHLDGSANFQCEIT-----PYDSGPYLIAWFKDGRQIPG-------------------RTSSTSLVINPVGREDRGIY  119 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-----~p~~~~~~~~w~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~g~y  119 (150)
                      +.+.+|+.+.|.|.+.     .|   .+.+.|.+++..+..                   ......|.|.++..+|.|.|
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~---~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y   80 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELA---QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTY   80 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHH---HCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEE
T ss_pred             EEEEeCCCEEEecccCCCccccc---ccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEE
Confidence            5678999999999985     24   678999988765410                   00135799999999999999


Q ss_pred             EEEEEeCCCCce----eeeEEEEEcCc
Q psy11131        120 QCIARRSDGDVA----QGSAELQLGGT  142 (150)
Q Consensus       120 ~C~~~~~~g~~~----~~~~~l~v~~~  142 (150)
                      .|.+.+..|...    ...+.|.|..+
T Consensus        81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~  107 (201)
T 1dr9_A           81 ECVVLKYEKDAFKREHLAEVTLSVKAD  107 (201)
T ss_dssp             EEEEEECCTTSCEEEEEEEEEEEEECC
T ss_pred             EEEEEcCCCCccccccccEEEEEEcCC
Confidence            999999776332    35677777665

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.80  E-value=8.6e-08  Score=54.46  Aligned_cols=80  Identities=21%  Similarity=0.333  Sum_probs=54.2

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~  115 (150)
                      ..|....+.+|+.+.|.|... .+   .+.+.|++..  ....            ...+        ...|.|.++..+|
T Consensus         6 q~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D   82 (120)
T 1mqk_L            6 QTPVSLSASVGETVTITCRASENI---YSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPED   82 (120)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             ecCCeEEEcCCCcEEEEEEeCCCC---CceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHH
Confidence            345667889999999999998 77   7889999853  2110            0111        3479999999999


Q ss_pred             CceEEEEEEeCC-CCceeeeEEEEEcC
Q psy11131        116 RGIYQCIARRSD-GDVAQGSAELQLGG  141 (150)
Q Consensus       116 ~g~y~C~~~~~~-g~~~~~~~~l~v~~  141 (150)
                      +|.|.|.+.+.. ......-..|.|..
T Consensus        83 sG~Y~C~~~~~~~~~~fg~gt~L~V~~  109 (120)
T 1mqk_L           83 FGSYYCQHHYGTPPLTFGGGTKLEIKR  109 (120)
T ss_dssp             CEEEEEEECSSSSSCCBCCCEEEEEC-
T ss_pred             CEEEEEEEEeCCCceEECCCeEEEEec
Confidence            999999998753 11122333555544

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.79  E-value=6.8e-08  Score=60.74  Aligned_cols=80  Identities=15%  Similarity=0.307  Sum_probs=56.1

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--cc------------CCCcc--------eeeEEEccCCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--QI------------PGRTS--------STSLVINPVGR  113 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~~------------~~~~~--------~~~l~~~~~~~  113 (150)
                      +...+....+.+|+.+.|.|.+. .+   .+.+.|++...  ..            ....+        ...|.|.++..
T Consensus        27 v~~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           27 MTQSPSSLSASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEeCCCeEEEeCCCcEEEEEecCCCC---CceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            33445667889999999999998 87   88999987421  10            00011        35799999999


Q ss_pred             CCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131        114 EDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       114 ~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +|+|.|.|.+.+..+........+.|
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V  129 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEI  129 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEE
Confidence            99999999998765422333345555

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.79  E-value=2.5e-08  Score=62.03  Aligned_cols=80  Identities=23%  Similarity=0.383  Sum_probs=56.4

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEEeecC--ccc------CC--------C--cc--------eeeEEEc
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAWFKDG--RQI------PG--------R--TS--------STSLVIN  109 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~--~~~------~~--------~--~~--------~~~l~~~  109 (150)
                      ...+ ...+.+|+.+.|.|.+. . |   .+.+.|++..  ...      ..        .  .+        ...|.|.
T Consensus         5 ~~~p-~~~v~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            5 TQSS-SASFSLGASAKLTCTLNSQHS---TYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             ECCS-EEEEETTSCEEEEEEECGGGT---TCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             EeCC-cEEECCCCcEEEEEECCCCCC---CcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            3344 67889999999999999 7 8   8999998832  100      00        0  01        3469999


Q ss_pred             cCCCCCCceEEEEEEeCCC----CceeeeEEEEEcC
Q psy11131        110 PVGREDRGIYQCIARRSDG----DVAQGSAELQLGG  141 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~~~g----~~~~~~~~l~v~~  141 (150)
                      ++..+|.|.|.|.+.+..|    ........|.|..
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  116 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLG  116 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEec
Confidence            9999999999999998764    1223345666663

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.78  E-value=2.3e-08  Score=56.19  Aligned_cols=51  Identities=25%  Similarity=0.277  Sum_probs=41.8

Q ss_pred             cCCCCceEEe----CCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce
Q psy11131          6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR   56 (150)
Q Consensus         6 ~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~   56 (150)
                      +..+.++.+.    ...|.|.++..+|+|.|+|.+.|..|.....+.|.|.+.|.
T Consensus        48 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           48 IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             CCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCS
T ss_pred             CcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCC
Confidence            3344566665    26799999999999999999999999888889999987654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.78  E-value=3.7e-08  Score=62.60  Aligned_cols=82  Identities=18%  Similarity=0.288  Sum_probs=57.9

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc--------------CCCcc--------eeeEEEccCCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI--------------PGRTS--------STSLVINPVGR  113 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~--------------~~~~~--------~~~l~~~~~~~  113 (150)
                      +...+....+.+|+.+.|.|.+. .|   .+.+.|++.....              ....+        ...|.|.++..
T Consensus         7 v~~~p~~~~v~~G~~v~L~C~~~~~~---~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   83 (250)
T 3esu_F            7 LIQSTSSLSASLGDRVTISCRASQDI---RNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ   83 (250)
T ss_dssp             EECSCSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEecCCEEEeeCCCcEEEEEEecccC---CceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence            33456667789999999999999 88   8899999853110              00011        23799999999


Q ss_pred             CCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        114 EDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       114 ~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      +|+|.|.|.+.+..+........|.|..
T Consensus        84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           84 EDIGTYFCQQGNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             hhCEEEEEEEeeCCCceECCCEEEEEEC
Confidence            9999999999987553333445566655

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.78  E-value=7.2e-09  Score=58.90  Aligned_cols=45  Identities=27%  Similarity=0.336  Sum_probs=38.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP   61 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~   61 (150)
                      +.|.|.+++.+|+|.|+|.+.|..|.....+.|.|.++|.+.+.+
T Consensus        74 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~p~i~~~p  118 (122)
T 3s35_X           74 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS  118 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEECC----
T ss_pred             EEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEeccCeEEeec
Confidence            579999999999999999999999998899999999887766554

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.77  E-value=9.7e-08  Score=54.17  Aligned_cols=65  Identities=23%  Similarity=0.431  Sum_probs=49.0

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~  115 (150)
                      ..|..+.+.+|+.+.|.|... .+   .+.+.|++..  ....            ...+        ...|.|.++..+|
T Consensus         8 q~p~~v~v~~G~~vtL~C~~~~~~---~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D   84 (119)
T 2e27_L            8 QSPSSLSASLGGKVTITCKANQDI---KKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPED   84 (119)
T ss_dssp             EECSEEEEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             ecCCeEEEeCCCCEEEEEEeCCCC---CceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHH
Confidence            345667889999999999998 77   7889998753  1110            0111        3479999999999


Q ss_pred             CceEEEEEEeC
Q psy11131        116 RGIYQCIARRS  126 (150)
Q Consensus       116 ~g~y~C~~~~~  126 (150)
                      +|.|.|.+.+.
T Consensus        85 sG~Y~C~~~~~   95 (119)
T 2e27_L           85 AATYYCLQYDN   95 (119)
T ss_dssp             CEEEEEEECGG
T ss_pred             CEEEEEEEccC
Confidence            99999999864

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.77  E-value=2.6e-08  Score=54.14  Aligned_cols=46  Identities=28%  Similarity=0.499  Sum_probs=39.4

Q ss_pred             cCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         6 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      +..+.++.+..+.|.|.+++.+|+|.|.|.+.|..|.....+.|.|
T Consensus        49 ~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           49 LVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             CCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence            4455677777789999999999999999999999888888877776

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.76  E-value=1.8e-07  Score=57.90  Aligned_cols=80  Identities=23%  Similarity=0.323  Sum_probs=57.7

Q ss_pred             CCCcEEEecCCcEEEEEEec-C-------CCCCCcEEEEeecCccc-----C------------CCcc----------ee
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-P-------YDSGPYLIAWFKDGRQI-----P------------GRTS----------ST  104 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~-------p~~~~~~~~w~~~~~~~-----~------------~~~~----------~~  104 (150)
                      .+....+.+|+.+.|.|... .       +   .+.+.|++++...     .            ...+          ..
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   82 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSP---PLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNC   82 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCC---CEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBC
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCC---ceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeE
Confidence            45667889999999999987 4       4   7899999875420     0            0001          23


Q ss_pred             eEEEccCCCCCCceEEEEEEeCCCCce---eeeEEEEEcCc
Q psy11131        105 SLVINPVGREDRGIYQCIARRSDGDVA---QGSAELQLGGT  142 (150)
Q Consensus       105 ~l~~~~~~~~~~g~y~C~~~~~~g~~~---~~~~~l~v~~~  142 (150)
                      .|.|.++..+|.|.|.|.+.+..+...   ...+.|.|.++
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~  123 (214)
T 2zg1_A           83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL  123 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECC
T ss_pred             EEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecC
Confidence            799999999999999999998763211   24677777664

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.76  E-value=1.3e-07  Score=52.57  Aligned_cols=65  Identities=17%  Similarity=0.378  Sum_probs=48.5

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--c---cC---------CCcc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--Q---IP---------GRTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~---~~---------~~~~--------~~~l~~~~~~~~~  115 (150)
                      ..|....+.+|+++.|.|... .+   .+.+.|++...  .   +.         ...+        ...|.|.++..+|
T Consensus         6 q~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 1qfw_M            6 QSPKSMSMSVGERVTLSCKASETV---DSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAED   82 (108)
T ss_dssp             EECSCEECCTTCCEEEEEEESSCC---CSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTC
T ss_pred             EeCCeEEEcCCCCEEEEeeeCCCC---CcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhh
Confidence            345567788999999999998 76   67899987431  1   10         0111        3479999999999


Q ss_pred             CceEEEEEEeC
Q psy11131        116 RGIYQCIARRS  126 (150)
Q Consensus       116 ~g~y~C~~~~~  126 (150)
                      +|.|.|.+.+.
T Consensus        83 sG~Y~C~~~~~   93 (108)
T 1qfw_M           83 FADYHCGQTYN   93 (108)
T ss_dssp             CSEEEEEECSS
T ss_pred             CEEEEEEEccC
Confidence            99999999864

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=1.9e-07  Score=54.07  Aligned_cols=83  Identities=25%  Similarity=0.368  Sum_probs=57.3

Q ss_pred             eCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEEeecCcc----cC--------CC----------cceeeEEEccCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAWFKDGRQ----IP--------GR----------TSSTSLVINPVGRE  114 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~~~----~~--------~~----------~~~~~l~~~~~~~~  114 (150)
                      ..+....+.+|+.+.|.|... . +   .+.+.|++....    +.        ..          .....|.|.++..+
T Consensus        13 q~p~~~~v~~G~~v~L~C~~~~~~~---~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   89 (136)
T 2d9c_A           13 QPEKSVSVAAGESATLRCAMTSLIP---VGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPA   89 (136)
T ss_dssp             CCCSEEEEETTSCEEECCEESCCCS---CCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTT
T ss_pred             ecCcEEEEcCCCCEEEEEEEcCCCC---CceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHH
Confidence            345667889999999999997 4 5   678999986521    10        00          00457999999999


Q ss_pred             CCceEEEEEEeCCC--Cce---eeeEEEEEcCcCc
Q psy11131        115 DRGIYQCIARRSDG--DVA---QGSAELQLGGTRN  144 (150)
Q Consensus       115 ~~g~y~C~~~~~~g--~~~---~~~~~l~v~~~p~  144 (150)
                      |+|.|.|.+.+..+  ...   .....|.|.++|.
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s  124 (136)
T 2d9c_A           90 DAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS  124 (136)
T ss_dssp             TCEEEEEEEEECCSSSCEEEEECCCEEEEEECCCC
T ss_pred             HCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCC
Confidence            99999999987532  011   1346777766543

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.76  E-value=1.1e-07  Score=52.96  Aligned_cols=66  Identities=15%  Similarity=0.373  Sum_probs=49.6

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--c---c---------CCCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--Q---I---------PGRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~---~---------~~~~~--------~~~l~~~~~~~~  114 (150)
                      ...|....+.+|+.+.|.|... .+   .+.+.|++...  .   +         ....+        ...|.|.++..+
T Consensus         7 ~q~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   83 (109)
T 2q20_A            7 TQSPSSLSASVGDRVTITCQASQDI---SNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPE   83 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EeeCCEEEecCCCcEEEEEeeccCC---CCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChh
Confidence            3345667889999999999998 77   78899987531  1   1         00111        347999999999


Q ss_pred             CCceEEEEEEeC
Q psy11131        115 DRGIYQCIARRS  126 (150)
Q Consensus       115 ~~g~y~C~~~~~  126 (150)
                      |+|.|.|.+.+.
T Consensus        84 DsG~Y~C~~~~~   95 (109)
T 2q20_A           84 DIATYYCQQYDN   95 (109)
T ss_dssp             GCEEEEEEECSS
T ss_pred             hCEEEEEEEeeC
Confidence            999999999864

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.76  E-value=1.2e-08  Score=56.11  Aligned_cols=44  Identities=27%  Similarity=0.357  Sum_probs=37.2

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .|+.+..    .+|.|.++..+|+|.|+|.+.|..|..+..+.|.|..
T Consensus        52 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           52 GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             GTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            3555443    4799999999999999999999999998889988864

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.75  E-value=2.3e-07  Score=57.75  Aligned_cols=82  Identities=20%  Similarity=0.422  Sum_probs=57.7

Q ss_pred             CCcEEEecCCcEEEEEEec-CC--CCCCcEEEEeecCccc---------CC------Ccc-----------eeeEEEccC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PY--DSGPYLIAWFKDGRQI---------PG------RTS-----------STSLVINPV  111 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p--~~~~~~~~w~~~~~~~---------~~------~~~-----------~~~l~~~~~  111 (150)
                      +..+.+.+|+.+.|.|.+. .|  ......+.|++++..+         ..      ..+           ...|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            3456788999999999986 44  1113589998864111         00      000           247999999


Q ss_pred             CCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131        112 GREDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      ..+|.|.|.|.+.+ .+ .....+.|.|..++.
T Consensus        88 ~~~D~G~Y~C~~~~-~~-~~~~~~~l~V~~~~~  118 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GG-ADYKRITVKVNAPYN  118 (222)
T ss_dssp             CGGGCEEEEEEEES-SS-EEEEEEEEEEEBCCC
T ss_pred             ccccCeEEEEEEEe-CC-CceeEEEEEEECCCC
Confidence            99999999999998 44 566778888876553

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=3.5e-08  Score=54.02  Aligned_cols=49  Identities=29%  Similarity=0.479  Sum_probs=41.1

Q ss_pred             cCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131          6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus         6 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      +..+.++.+....|.|.++..+|+|.|+|.+.|..|.....+.|.|.+.
T Consensus        43 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~   91 (99)
T 2cr3_A           43 LAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDA   91 (99)
T ss_dssp             CCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCSC
T ss_pred             CCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEecC
Confidence            3445677776789999999999999999999999888888888888764

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.75  E-value=4.4e-08  Score=59.93  Aligned_cols=108  Identities=15%  Similarity=0.227  Sum_probs=72.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce-EEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKD   93 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~   93 (150)
                      ..|.|.|++  |.|.|.|.+.-........+.|+|+.+|. +.+.+....+.+|+.++|.|.+.  .|.. ...+.|++.
T Consensus        52 ~~l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~-~L~v~llrG  128 (192)
T 1zxq_A           52 KHYLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLD-SLTLFLFRG  128 (192)
T ss_dssp             EEEEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGG-GEEEEEEET
T ss_pred             EEEEEeccc--cCCeeEEEEECCCcceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCC-CcEEEEEcC
Confidence            358999998  78999999886545566788899987653 22322223578999999999998  6611 456899987


Q ss_pred             CcccCCCc--------ceeeEE-EccCCCCCCc-eEEEEEEeCC
Q psy11131         94 GRQIPGRT--------SSTSLV-INPVGREDRG-IYQCIARRSD  127 (150)
Q Consensus        94 ~~~~~~~~--------~~~~l~-~~~~~~~~~g-~y~C~~~~~~  127 (150)
                      +..+....        ....+. ...+..+|.| .|.|.|.-..
T Consensus       129 ~~~l~~~~f~~~~~~~~~~tv~~~~~~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          129 NETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             TEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             CEEeeecccccccCcCcceEEEEEEecchhhCCceEEEEEEecC
Confidence            76543211        122222 2345566777 7999998665

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.75  E-value=1.2e-07  Score=58.71  Aligned_cols=80  Identities=16%  Similarity=0.261  Sum_probs=54.9

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc------------CCCcc--------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI------------PGRTS--------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~------------~~~~~--------~~~l~~~~~~~~~~g  117 (150)
                      |....+.+|+.+.|.|.+. .|....+.+.|++++  ..+            ....+        ...|.|.++..+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            6667889999999999998 551002689998753  221            00111        347999999999999


Q ss_pred             eEEEEEEeCCCCceeeeEEEEEc
Q psy11131        118 IYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus       118 ~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      .|.|.+.+..+........+.|.
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~  109 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVL  109 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEC
T ss_pred             EEEEEEecCchhhcCCCeEEEEe
Confidence            99999998765323344556663

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.74  E-value=1.7e-08  Score=60.87  Aligned_cols=75  Identities=15%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCC------------Ccc------eeeEEEccCCCCCCceEEEEEE
Q psy11131         63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG------------RTS------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~------------~~~------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      .+.+.+|+.+.|.|....|   .+.+.|++++..+..            ..+      ...|.|.++...|+|.|.|.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~~---~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNVP---LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEETTCCEEECCCCSSC---CSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEcCCCEEEcCCCCCC---cceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEe
Confidence            3567899999999987555   789999987643210            001      4689999999999999999998


Q ss_pred             eCCCCceeeeEEEEEcCcC
Q psy11131        125 RSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p  143 (150)
                      +..|   ...+.|.|.+++
T Consensus        81 n~~~---~~~~~L~V~~~~   96 (171)
T 1ccz_A           81 NITD---TMKFFLYVLEMV   96 (171)
T ss_dssp             TCCS---CEEEEEEEECCC
T ss_pred             CCCC---cEEEEEEEECcC
Confidence            7766   566777777654

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.74  E-value=1e-07  Score=56.05  Aligned_cols=85  Identities=19%  Similarity=0.325  Sum_probs=54.9

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--c---cC---------CCcc--------eeeEEEccCCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--Q---IP---------GRTS--------STSLVINPVGR  113 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~---~~---------~~~~--------~~~l~~~~~~~  113 (150)
                      +...+..+.+.+|+.+.|.|... .+   .+.+.|++...  .   +.         ...+        ...|.|.++..
T Consensus        19 v~q~p~~v~v~~G~sVtL~C~~s~~~---~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~   95 (146)
T 2yc1_B           19 LTQSPATLSVSPGERATLSCRASQSV---RSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEP   95 (146)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEEeCCEEEEecCCCEEEEEEECCCC---CCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCH
Confidence            33445667889999999999998 66   67899987531  1   10         0111        34699999999


Q ss_pred             CCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131        114 EDRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       114 ~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      +|+|.|.|.+.+........-..|.|..+++
T Consensus        96 ~DsG~Y~C~~~~~~~~~fg~GT~L~V~~~~~  126 (146)
T 2yc1_B           96 EDFAIYYCQQYRYSPRTFGQGTKVEIKRAAA  126 (146)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEEC----
T ss_pred             HHCEEEEEEEecCCCCeECCCEEEEEeCCcc
Confidence            9999999999865321122233566655543

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.74  E-value=3.6e-08  Score=55.28  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=37.9

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCc-ceeEEEEEEEec
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGG-EATAEVRLQVST   53 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v~~   53 (150)
                      ++|..+.. ++|.|.|++++|+|.|+|.+.+..+ ...+.+.|.|..
T Consensus        63 ~gR~~~~~ngSL~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           63 SGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             CSCEEECTTSCEEECSCCGGGCEEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             CCcEEEecCCcEEEccCcccCCeEEEEEEEeCCCcEEEEEEEEEEec
Confidence            57877766 9999999999999999999998755 467778888875

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.73  E-value=1.1e-07  Score=53.01  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=52.2

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc--cC-----------CCcc----------eeeEEEccCCCCCCc
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ--IP-----------GRTS----------STSLVINPVGREDRG  117 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~--~~-----------~~~~----------~~~l~~~~~~~~~~g  117 (150)
                      ..+.+.+|+.+.|.|... ...  ...+.|++....  ..           ...+          ...|.|.++..+|+|
T Consensus         4 ~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG   81 (110)
T 2q87_A            4 RTVAGPVGGSLSVQCPYEKEHR--TLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAG   81 (110)
T ss_dssp             EEEEECTTSCEEEEEECCGGGT--TSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             cEEEEeCCCcEEEEeEecCCcC--CceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCE
Confidence            345678999999999987 331  468999875311  10           0011          347999999999999


Q ss_pred             eEEEEEEeCC-CCceeeeEEEEEcCcC
Q psy11131        118 IYQCIARRSD-GDVAQGSAELQLGGTR  143 (150)
Q Consensus       118 ~y~C~~~~~~-g~~~~~~~~l~v~~~p  143 (150)
                      .|.|.+.+.. |......+.+.|...|
T Consensus        82 ~Y~C~~~~~~~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           82 TYWCGVDTPWLQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             EEEEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred             EEEEEEecCccCccCCccEEEEEEEec
Confidence            9999999875 4112234445554444

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=3.2e-08  Score=54.39  Aligned_cols=49  Identities=22%  Similarity=0.279  Sum_probs=39.0

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ++..+.++.+..    ..|.|.++..+|+|.|+|.+.|.  ..+..+.|.|.++|
T Consensus        45 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           45 PVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVISGP   97 (100)
T ss_dssp             ECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEECCS
T ss_pred             ECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEeCCC
Confidence            445566766654    37999999999999999999997  45677888888765

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.73  E-value=4.3e-08  Score=63.41  Aligned_cols=83  Identities=16%  Similarity=0.327  Sum_probs=57.0

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc-----cC---------CCcc--------eeeEEEccCCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ-----IP---------GRTS--------STSLVINPVGR  113 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~-----~~---------~~~~--------~~~l~~~~~~~  113 (150)
                      +...+....+.+|+.+.|.|.+. .|   .+.+.|++++..     +.         ...+        ...|.|.++..
T Consensus        15 v~~~p~~~~v~~G~~v~L~C~~~~~p---~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           15 MTQSPSSLSASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEeCCCeEEEcCCCCEEEEeEcCCCC---CCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            34456667788999999999999 88   889999875421     10         0111        23799999999


Q ss_pred             CCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        114 EDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       114 ~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      +|+|.|.|.+.|..+........|.|..+
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~  120 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGG  120 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC---
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecC
Confidence            99999999999875422333455666554

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.73  E-value=1.5e-07  Score=52.72  Aligned_cols=67  Identities=28%  Similarity=0.528  Sum_probs=48.7

Q ss_pred             eCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecC--cccC----------C-----------CcceeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDG--RQIP----------G-----------RTSSTSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~--~~~~----------~-----------~~~~~~l~~~~~~~~~  115 (150)
                      ..|....+.+|+.+.|.|.....   .+.+.|++..  ....          .           ......|.|.++..+|
T Consensus         6 q~p~~~~v~~G~~v~L~C~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D   82 (113)
T 1h5b_A            6 QSPSALSLHEGTDSALRCNFTTT---MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEEESSC---CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             ECCCEEEEecCCcEEEEEEECCC---CceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhh
Confidence            34566778999999999998732   3579998753  1110          0           0013479999999999


Q ss_pred             CceEEEEEEeCCC
Q psy11131        116 RGIYQCIARRSDG  128 (150)
Q Consensus       116 ~g~y~C~~~~~~g  128 (150)
                      +|.|.|.+.+..+
T Consensus        83 sG~Y~C~~~n~~~   95 (113)
T 1h5b_A           83 SGTYFCAAEASSG   95 (113)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEEecCCC
Confidence            9999999998654

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.73  E-value=1.6e-07  Score=54.23  Aligned_cols=79  Identities=23%  Similarity=0.413  Sum_probs=56.2

Q ss_pred             CCCcEEEecCCcEEEEEEec----CCCCCCcEEEEeecCcccC----------------------------CC--cc---
Q psy11131         60 NPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP----------------------------GR--TS---  102 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~----~p~~~~~~~~w~~~~~~~~----------------------------~~--~~---  102 (150)
                      .+....+.+|+.+.|.|...    .+   .+.+.|++......                            ..  .+   
T Consensus        10 ~~~~v~v~~G~~v~L~C~~~~~~~~~---~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~   86 (135)
T 1xt5_A           10 THTEVEVHAGGTVELPCSYQLANDTQ---PPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   86 (135)
T ss_dssp             SCSEEEEETTSCEEECCEEEEETCCS---CCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEE
T ss_pred             CCceEEEeCCCCEEEeeEeecCCCCC---ccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEE
Confidence            45567788999999999863    45   78999988543210                            00  11   


Q ss_pred             ----eeeEEEccCCCCCCceEEEEEEeCCCC----ceeeeEEEEEcC
Q psy11131        103 ----STSLVINPVGREDRGIYQCIARRSDGD----VAQGSAELQLGG  141 (150)
Q Consensus       103 ----~~~l~~~~~~~~~~g~y~C~~~~~~g~----~~~~~~~l~v~~  141 (150)
                          ...|.|.++..+|+|.|.|.+.+....    .....+.|.|.+
T Consensus        87 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g  133 (135)
T 1xt5_A           87 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  133 (135)
T ss_dssp             SCTTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred             ecCCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence                257999999999999999999985331    334667777754

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=6.2e-08  Score=53.00  Aligned_cols=46  Identities=28%  Similarity=0.539  Sum_probs=38.7

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      +.++.+.. +.|.|.+++.+|+|.|+|.+.|..|.....+.|.|.++
T Consensus        53 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           53 DPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             CSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred             CCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecC
Confidence            44555544 78999999999999999999999888888888888764

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.72  E-value=1.7e-07  Score=60.02  Aligned_cols=84  Identities=24%  Similarity=0.402  Sum_probs=56.2

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC------------------cc----------eeeEE
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR------------------TS----------STSLV  107 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~------------------~~----------~~~l~  107 (150)
                      +...+....+.+|+.+.|.|.+. ......+.+.|++.+......                  .+          ...|.
T Consensus         8 v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   87 (268)
T 3mj6_A            8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLL   87 (268)
T ss_dssp             ----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEE
T ss_pred             cccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEE
Confidence            33455667889999999999986 211116789999865422110                  00          26799


Q ss_pred             EccCCCCCCceEEEEEEeCCCC-ceeeeEEEEEc
Q psy11131        108 INPVGREDRGIYQCIARRSDGD-VAQGSAELQLG  140 (150)
Q Consensus       108 ~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~v~  140 (150)
                      |.++..+|.|.|.|.+.+..+. .....+.|.|.
T Consensus        88 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           88 LQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             ECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             ECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            9999999999999999987552 24455666664

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.72  E-value=1.3e-07  Score=52.92  Aligned_cols=64  Identities=23%  Similarity=0.363  Sum_probs=48.4

Q ss_pred             eCCCcEEEecCCcEEEEEEec-C--CCCCCcEEEEeecC--cc----cCCCcc----------eeeEEEccCCCCCCceE
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-P--YDSGPYLIAWFKDG--RQ----IPGRTS----------STSLVINPVGREDRGIY  119 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~--p~~~~~~~~w~~~~--~~----~~~~~~----------~~~l~~~~~~~~~~g~y  119 (150)
                      ..|....+.+|+.+.|.|... .  +   .+.+.|++..  ..    +....+          ...|.|.++..+|+|.|
T Consensus         5 q~p~~~~~~~G~~v~L~C~~~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y   81 (111)
T 2ywz_A            5 QTPRTITKETGESLTIKCVLKDHSCG---LSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTY   81 (111)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSC---CCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             ECCCcEEEccCCCEEEEeEECCCCCC---CCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEE
Confidence            346667889999999999987 4  5   6789998752  11    111111          45799999999999999


Q ss_pred             EEEEEe
Q psy11131        120 QCIARR  125 (150)
Q Consensus       120 ~C~~~~  125 (150)
                      .|.+.+
T Consensus        82 ~C~~~~   87 (111)
T 2ywz_A           82 KCQADY   87 (111)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999998

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.72  E-value=2.6e-07  Score=52.25  Aligned_cols=75  Identities=19%  Similarity=0.243  Sum_probs=55.0

Q ss_pred             EEEecCCcEEEEEEecCCCCCC----cEEEEeecCcccCC-----CcceeeEEEccCCCCCCceEEEEEEeCCC-Cceee
Q psy11131         64 LSVHLDGSANFQCEITPYDSGP----YLIAWFKDGRQIPG-----RTSSTSLVINPVGREDRGIYQCIARRSDG-DVAQG  133 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~~p~~~~----~~~~w~~~~~~~~~-----~~~~~~l~~~~~~~~~~g~y~C~~~~~~g-~~~~~  133 (150)
                      ..+..|+.++|.| ....   .    ..+.|++++.....     ......+.|..+...|+|.|.|...+..+ ...+.
T Consensus        18 ~vV~~G~~VTL~C-~~~~---~~~~~~~f~L~k~g~~~~~~~~~~~~~~a~f~i~~vt~~daG~Y~C~y~~~~~wS~~Sd   93 (118)
T 4ety_A           18 LMISQGTFVTVVC-SYSD---KHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSK   93 (118)
T ss_dssp             EEEETTCCEEEEE-ECTT---TGGGCCEEEEEETTEEEEEEECCSSSSEEEEEECSCCGGGCEEEEEEEEC----CEECC
T ss_pred             CcccCCCcEEEEE-CCCC---CCcccCEEEEEECCcCccccccCCCCcceEEEeCccCccCCeEEEEEeeCCCccccccC
Confidence            4578899999999 7633   3    68999988865321     11167899999999999999999987655 24577


Q ss_pred             eEEEEEcCc
Q psy11131        134 SAELQLGGT  142 (150)
Q Consensus       134 ~~~l~v~~~  142 (150)
                      .+.|.|.+.
T Consensus        94 pl~L~Vtg~  102 (118)
T 4ety_A           94 TLELKVIKE  102 (118)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEEEe
Confidence            888888764

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.71  E-value=1.8e-07  Score=52.13  Aligned_cols=77  Identities=18%  Similarity=0.225  Sum_probs=54.6

Q ss_pred             CCcEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecCcc-cC------------C--Ccc------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDGRQ-IP------------G--RTS------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~-~~------------~--~~~------~~~l~~~~~~~~~~g  117 (150)
                      +....+.+|+.+.|.|.. . .+   .+.+.|++.... +.            .  ..+      ...|.|.++..+|+|
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~---~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG   86 (110)
T 2ptt_A           10 IPDINAYTGSNVTLKIHKDPLGP---YRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKG   86 (110)
T ss_dssp             CCSEEEETTSCEEECSCSSCCCS---CSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCE
T ss_pred             CCCEEEecCCcEEEeCCccCCCC---cCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCe
Confidence            345778899999999998 4 56   679999983221 10            0  011      357999999999999


Q ss_pred             eEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        118 IYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       118 ~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      .|.|.+.+...  ....+.|.|.++
T Consensus        87 ~Y~C~v~~~~~--~~~~~~L~V~dp  109 (110)
T 2ptt_A           87 TYYMRVLRETE--NELKITLEVFDP  109 (110)
T ss_dssp             EEEEEEESSSB--CCEEEEEEEECC
T ss_pred             EEEEEEEcCCC--cEEEEEEEEEcc
Confidence            99999986542  344677777643

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.71  E-value=5.6e-08  Score=68.96  Aligned_cols=79  Identities=16%  Similarity=0.356  Sum_probs=61.2

Q ss_pred             cEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecCcccCC------------Ccc-----eeeEEEccCCCCCCceEEEEE
Q psy11131         63 LLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDGRQIPG------------RTS-----STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~~~~------------~~~-----~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      ...+.+|+.+.|.|.. . .|   .+.+.|++++..+..            ..+     ...|.|.++..+|.|.|+|.+
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~  451 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKP---PQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQA  451 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSS---SCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEE
T ss_pred             ccceecCCcEEEeeeecCCCC---CceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEE
Confidence            4567899999999999 5 77   889999987652210            111     357999999999999999999


Q ss_pred             EeCCCCceeeeEEEEEcCcCc
Q psy11131        124 RRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      .+..+......+.|.|..+|.
T Consensus       452 ~n~~~~~~~~~~~l~V~~~~~  472 (581)
T 3o3u_N          452 MNRNGKETKSNYRVRVYQIPG  472 (581)
T ss_dssp             ECTTSCEEEEEEEEEEEBCCC
T ss_pred             EcCCCceeEEEEEEEEEcCCC
Confidence            998885436778888876543

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.71  E-value=2.2e-07  Score=53.41  Aligned_cols=82  Identities=22%  Similarity=0.426  Sum_probs=56.3

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC------C-------Ccc----------eeeEEEccCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP------G-------RTS----------STSLVINPVG  112 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~------~-------~~~----------~~~l~~~~~~  112 (150)
                      ..|..+.+.+|+.+.|.|... ...  ...+.|++.  +....      .       ..+          ...|.|.++.
T Consensus         6 Q~P~~~~v~~G~~vtL~C~~s~~~~--~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~   83 (129)
T 3rrq_A            6 FSPALLVVTEGDNATFTCSFSNTSE--SFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRAR   83 (129)
T ss_dssp             EECSEEEEETTSCEEEEEECCCCC---CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCC
T ss_pred             ECCCEEEEeCCCCEEEEeEecCCCC--CcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCC
Confidence            346667889999999999987 431  467899863  21100      0       001          3579999999


Q ss_pred             CCCCceEEEEEEeCCCCc---eeeeEEEEEcCc
Q psy11131        113 REDRGIYQCIARRSDGDV---AQGSAELQLGGT  142 (150)
Q Consensus       113 ~~~~g~y~C~~~~~~g~~---~~~~~~l~v~~~  142 (150)
                      .+|+|.|.|.+.+..+..   .+..+.|.|.+.
T Consensus        84 ~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~  116 (129)
T 3rrq_A           84 RNDSGTYLCGAISLAPKLQIKESLRAELRVTER  116 (129)
T ss_dssp             GGGCEEEEEEEEECGGGCEEEECCCEEEEEECC
T ss_pred             hhHCEEEEEEEEecCCCceeeEeceEEEEEecC
Confidence            999999999999876521   144567777653

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.70  E-value=1.3e-07  Score=59.74  Aligned_cols=84  Identities=24%  Similarity=0.448  Sum_probs=57.8

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCC-CCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYD-SGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~-~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ..+....+.+|+.+.|.|.+. .|. ...+.+.|+++.  ..+.            ...+        ...|.|.++..+
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   85 (240)
T 1moe_A            6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (240)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChh
Confidence            345667889999999999998 530 005789998853  2110            0011        237999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      |+|.|.|.+.+..+........|.|..+
T Consensus        86 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  113 (240)
T 1moe_A           86 DVATYYCQQTNEDPYTFGGGTKLEIKGG  113 (240)
T ss_dssp             GCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             hCEEEEEEEccCCceeecCCEEEEEecC
Confidence            9999999999876532445567777664

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.70  E-value=1.6e-07  Score=52.15  Aligned_cols=65  Identities=18%  Similarity=0.305  Sum_probs=48.5

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~  115 (150)
                      ..|....+.+|+.+.|.|... .+   .+.+.|++..  ....            ...+        ...|.|.++..+|
T Consensus         6 q~p~~~~~~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (107)
T 1i8k_A            6 QSPASLSVATGEKVTIRCMTSTDI---DDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (107)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCCeEEecCCCCEEEEEEECCCC---CCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHH
Confidence            345567788999999999998 77   7789998753  1110            0111        2479999999999


Q ss_pred             CceEEEEEEeC
Q psy11131        116 RGIYQCIARRS  126 (150)
Q Consensus       116 ~g~y~C~~~~~  126 (150)
                      +|.|.|.+.+.
T Consensus        83 sG~Y~C~~~~~   93 (107)
T 1i8k_A           83 VGDYYCLQSFN   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEEeeC
Confidence            99999999864

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=98.70  E-value=4e-07  Score=57.40  Aligned_cols=112  Identities=25%  Similarity=0.410  Sum_probs=69.7

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC---------------------ceEEeCCC
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP---------------------YRVDVNPP   62 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~---------------------~~~~~~~~   62 (150)
                      .|+.+..      ..|.+.+++.+|++.|+|........=-.-+.++|...                     ..+...|.
T Consensus        66 gR~TiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~  145 (254)
T 4f9p_D           66 DRTTLTADQSSSTAYMQLSSLTSDDSAVYFCARSDYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPV  145 (254)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEECEESSSCCEECCCEEEEECC-------------------CCSCCEEEECS
T ss_pred             CCEEEeeccCCCcCeeEEccCCCCCCEEEEEEecCCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCc
Confidence            5666543      35899999999999999964321100001123344311                     12334456


Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC------------CCcc--------eeeEEEccCCCCCCceE
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP------------GRTS--------STSLVINPVGREDRGIY  119 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~------------~~~~--------~~~l~~~~~~~~~~g~y  119 (150)
                      .+.+.+|+.+.|.|.+. .-   ...+.|++.  ++...            ...+        ...|.|+.++.+|.+.|
T Consensus       146 slsvs~G~~vtlsC~~S~~~---~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~Y  222 (254)
T 4f9p_D          146 TLSVTPGDSVSLSCRASQSI---SNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIY  222 (254)
T ss_dssp             EEEECTTCEEEEEEEESSCC---TTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEE
T ss_pred             eeEEcCCCcEeeEEEccCcc---cCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEE
Confidence            67789999999999987 43   334678653  22110            0001        34799999999999999


Q ss_pred             EEEEE
Q psy11131        120 QCIAR  124 (150)
Q Consensus       120 ~C~~~  124 (150)
                      .|.-.
T Consensus       223 YC~q~  227 (254)
T 4f9p_D          223 FCQQS  227 (254)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            99654

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.69  E-value=1.3e-07  Score=54.08  Aligned_cols=77  Identities=22%  Similarity=0.458  Sum_probs=51.4

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCC-CCcEEEEeecC----------------cccCCC----cc----------------
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDS-GPYLIAWFKDG----------------RQIPGR----TS----------------  102 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~-~~~~~~w~~~~----------------~~~~~~----~~----------------  102 (150)
                      +..+.+.+|+.+.|.|... .+.. ....+.|++..                ..+...    .+                
T Consensus         9 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~   88 (128)
T 3r0n_A            9 LPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEA   88 (128)
T ss_dssp             CSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCC
T ss_pred             CCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEecccccccccccc
Confidence            4556778999999999998 5410 02389999852                111110    11                


Q ss_pred             ---eeeEEEccCCCCCCceEEEEEEe-CCCCceeeeEEEE
Q psy11131        103 ---STSLVINPVGREDRGIYQCIARR-SDGDVAQGSAELQ  138 (150)
Q Consensus       103 ---~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~~~~~~l~  138 (150)
                         ...|.|.++..+|+|.|.|.+.+ ..| .......|.
T Consensus        89 ~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g-~~~~~~~L~  127 (128)
T 3r0n_A           89 ELQDATLALHGLTVEDEGNYTCEFATFPKG-SVRGMTWLR  127 (128)
T ss_dssp             BCSBCCEEECSCCGGGCEEEEEEEEEETTE-EEEEEEEEE
T ss_pred             CCCCeEEEEccCCchhCeEEEEEEEeCCCC-CcccEEEEE
Confidence               12899999999999999998765 445 455555554

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.69  E-value=3.7e-08  Score=54.69  Aligned_cols=76  Identities=24%  Similarity=0.360  Sum_probs=50.9

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc---------------cC--CCcc----------eeeEEEccCCCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ---------------IP--GRTS----------STSLVINPVGRED  115 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~---------------~~--~~~~----------~~~l~~~~~~~~~  115 (150)
                      +.+.+|+.+.|.|... .+......+.|++....               ..  ...+          ...|.|.++..+|
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   83 (109)
T 2oyp_A            4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDD   83 (109)
T ss_dssp             EEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGG
T ss_pred             EEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChh
Confidence            4577899999999987 44111245899874321               00  0000          3579999999999


Q ss_pred             CceEEEEEEeCCCCceeeeEEEEEc
Q psy11131        116 RGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus       116 ~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      +|.|.|.+.+..+ .....+.|.|.
T Consensus        84 ~G~Y~C~v~~~~~-~~~~~~~l~V~  107 (109)
T 2oyp_A           84 HGTYCCRIQFPGL-MNDKKLELKLD  107 (109)
T ss_dssp             CEEEEEEECCSST-TCCEEEEEEEE
T ss_pred             CeEEEEEEEcCCc-ccceEEEEEEE
Confidence            9999999998765 34445555553

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=1.9e-08  Score=56.96  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      .+|.|.+++.+|+|.|+|++.+..|..++.+.|.|..+
T Consensus        80 ~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           80 VELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             EEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             EEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            67999999999999999999999999999999999864

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.68  E-value=4.2e-08  Score=56.15  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=35.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .+|.|.+++..|+|.|+|++.|..+..++.+.|+|..
T Consensus        75 ~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           75 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            6799999999999999999999999999999999997

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.67  E-value=9.1e-08  Score=52.91  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=38.4

Q ss_pred             CCCceEEe-----CCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131          8 PGPRTRVL-----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus         8 ~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      .+.|+.+.     ..+|.|.+++.+|+|.|+|.+.+ .+..+..+.|.|..+|
T Consensus        57 ~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           57 RDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             CCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             ccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            34566653     26899999999999999999999 7888888889888653

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.66  E-value=8.6e-08  Score=53.12  Aligned_cols=47  Identities=23%  Similarity=0.323  Sum_probs=34.5

Q ss_pred             CCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131          9 GPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus         9 ~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      +.++.+..  +.|.|.++..+|+|.|+|.+.|..|.....+.|.|..++
T Consensus        54 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           54 DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             BTTEEEETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC--
T ss_pred             CCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCCC
Confidence            34444443  689999999999999999999999998889999998754

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.66  E-value=2.3e-07  Score=59.62  Aligned_cols=82  Identities=17%  Similarity=0.282  Sum_probs=54.9

Q ss_pred             EEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeec--Cccc------------------------CC-CcceeeEEEc
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKD--GRQI------------------------PG-RTSSTSLVIN  109 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~--~~~~------------------------~~-~~~~~~l~~~  109 (150)
                      +...+....+.+|+.+.|.|....+   .+.+.|++.  +...                        .. ......|.|.
T Consensus        29 v~~~p~~v~v~~G~~v~L~C~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           29 VSQTPSNKVTEKGKYVELRCDPISG---HTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             CBCCCSEEEEETTCCEEEEEBCBTT---CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             eEeCCCEEEecCCCCEEEEEEeCCC---CceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            3345566788999999999987655   788999872  1110                        00 0014579999


Q ss_pred             cCCCCCCceEEEEEEeC-CCCceeeeEEEEEcC
Q psy11131        110 PVGREDRGIYQCIARRS-DGDVAQGSAELQLGG  141 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~~-~g~~~~~~~~l~v~~  141 (150)
                      ++..+|+|.|.|.+.+. ..........+.|..
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~  138 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLE  138 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEec
Confidence            99999999999999973 111233344555554

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.66  E-value=1.5e-07  Score=62.33  Aligned_cols=79  Identities=19%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c----eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S----STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      +..+.+..|+.+.|.|.+. .+.  .+.+.|.+++..+.... .    ...|.|.++...|.|.|.|.   ..| .....
T Consensus        13 ~~~v~~~~G~~v~l~C~~~~~~~--~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~---~~g-~~~~~   86 (325)
T 1n26_A           13 RGVLTSLPGDSVTLTCPGVEPED--NATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY---RAG-RPAGT   86 (325)
T ss_dssp             TTEEEECTTCCEEEECTTSCTTC--CSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEE---SSS-SCSCE
T ss_pred             CCcEECCCCCcEEEEeCCCCCCC--CceEEEEECCccCCccccccccccceEEecccchhhCeEeEEE---eCC-EEeee
Confidence            3334457999999999987 431  68999999876542211 1    46899999999999999999   355 56677


Q ss_pred             EEEEEcCcCcc
Q psy11131        135 AELQLGGTRNI  145 (150)
Q Consensus       135 ~~l~v~~~p~~  145 (150)
                      +.|.|.++|..
T Consensus        87 ~~L~V~~pP~~   97 (325)
T 1n26_A           87 VHLLVDVPPEE   97 (325)
T ss_dssp             EEEEECCCCCC
T ss_pred             EEEEeccCCCC
Confidence            88999887654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.66  E-value=2.2e-08  Score=55.38  Aligned_cols=40  Identities=15%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR   56 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~   56 (150)
                      +.|.|.++..+|+|.|+|.+.|..|.....+.|.|.++|.
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  101 (103)
T 1wwb_X           62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             EEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEECCCCC
Confidence            3499999999999999999999999999999999887653

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.66  E-value=1.7e-07  Score=56.91  Aligned_cols=77  Identities=16%  Similarity=0.177  Sum_probs=56.3

Q ss_pred             CcEEEecCCcEEEEEEec--CCCCCCcEEEEeec-Cccc------------CCC--cc------eeeEEEccCCCCCCce
Q psy11131         62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKD-GRQI------------PGR--TS------STSLVINPVGREDRGI  118 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~-~~~~------------~~~--~~------~~~l~~~~~~~~~~g~  118 (150)
                      ....+.+|+.+.|.|...  .+   .+.+.|++. +..+            ...  .+      ...|.|.++...|+|.
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~---~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~   83 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLAS---YQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGD   83 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCS---CSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCc---eeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeE
Confidence            456788999999999974  44   689999884 2111            011  11      4579999999999999


Q ss_pred             EEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        119 YQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       119 y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      |.|.+.+..  .....+.|.|.+++
T Consensus        84 Y~C~v~~~~--~~~~~~~L~V~~~~  106 (180)
T 2dru_A           84 YYMRMLHET--EDQWKITMEVYEMV  106 (180)
T ss_dssp             EEEEEESSS--EEEEEEEEEEECCC
T ss_pred             EEEEEEcCC--eEEEEEEEEEECCC
Confidence            999998654  45677788887653

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.66  E-value=9.3e-09  Score=65.43  Aligned_cols=95  Identities=13%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             eEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEE-EecCCcEEEEEEec--C--CCCCCcEEEEeecCcccCCCc---
Q psy11131         30 GTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS-VHLDGSANFQCEIT--P--YDSGPYLIAWFKDGRQIPGRT---  101 (150)
Q Consensus        30 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-~~~g~~~~l~C~~~--~--p~~~~~~~~w~~~~~~~~~~~---  101 (150)
                      |.|.|...+..+.  +.....+..+......+.... +..|+.+.|.|.+.  .  |.  ...+.|++++..+....   
T Consensus         1 ~~~~~~~~~~~~~--c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~--~i~v~W~k~g~~l~~~~~~~   76 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP--EVKFNWYVDGVEVHNAKTKP   76 (240)
T ss_dssp             ------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--C--CCEEEEEETTEEECCCEECC
T ss_pred             CceeeeeeecCCC--CCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCC--ccEEEEEECCcccCCceecc
Confidence            7899998886443  222222223333334444443 45699999999998  4  31  34899999987653211   


Q ss_pred             -------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131        102 -------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus       102 -------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                             .   .+.|.|......|.|.|.|.+.+..+
T Consensus        77 ~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~  113 (240)
T 4acp_A           77 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL  113 (240)
T ss_dssp             CEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC--
T ss_pred             ceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCC
Confidence                   0   24566666656678999999998765

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.66  E-value=1.5e-07  Score=60.16  Aligned_cols=82  Identities=12%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC-----C----------------------CcceeeE
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP-----G----------------------RTSSTSL  106 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~-----~----------------------~~~~~~l  106 (150)
                      +...+....+.+|+.+.|.|.+. .+   .+.+.|++..  ....     .                      ......|
T Consensus         5 v~~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            5 LEGRTKSVIRQTGSSAEITCDLAEGS---TGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ------CEEEETTCCEEEECCC--------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             cccCCceeEecCCCcEEEEEEEccCC---CcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            44456677889999999999998 77   8899998731  1100     0                      0003469


Q ss_pred             EEccCCCCCCceEEEEEEeCCCC--ceeeeEEEEEcC
Q psy11131        107 VINPVGREDRGIYQCIARRSDGD--VAQGSAELQLGG  141 (150)
Q Consensus       107 ~~~~~~~~~~g~y~C~~~~~~g~--~~~~~~~l~v~~  141 (150)
                      .|.++..+|+|.|.|.+.+..+.  .......|.|..
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~  118 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTD  118 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEec
Confidence            99999999999999999986541  223344555554

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.65  E-value=1.9e-07  Score=53.99  Aligned_cols=84  Identities=20%  Similarity=0.357  Sum_probs=54.8

Q ss_pred             EEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecC--ccc---C-CCcc--------eeeEEEccCCCCCCceEEEE
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDG--RQI---P-GRTS--------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~--~~~---~-~~~~--------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +...|....+.+|+.+.|.|... .   .+.+.|+++.  ...   . ...+        ...|.|.++..+|+|.|.|.
T Consensus        20 v~q~p~~~~v~~G~~v~L~C~~~-~---~~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~   95 (133)
T 3khq_A           20 IWQHPRFAAKKRSSMVKFHCYTN-H---SGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCK   95 (133)
T ss_dssp             EEEECSEEEECTTCCEEEEEEES-S---SSCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             eEEcCceEEEeCCCeEEEEEEeC-C---CCEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEE
Confidence            34456677889999999999986 1   1578999863  211   1 1111        34699999999999999999


Q ss_pred             EEeCCCC---ceeeeEEEEEcCcCc
Q psy11131        123 ARRSDGD---VAQGSAELQLGGTRN  144 (150)
Q Consensus       123 ~~~~~g~---~~~~~~~l~v~~~p~  144 (150)
                      +.|..|.   .......|.|.+.|.
T Consensus        96 a~n~~g~~~~~~g~gt~L~V~~~p~  120 (133)
T 3khq_A           96 QKCDSANHNVTDSCGTELLVLGFST  120 (133)
T ss_dssp             ESSCC-------CCCEEEEEC----
T ss_pred             EEeCCCCcceeECCCEEEEEEeccc
Confidence            9987641   123445677777553

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.65  E-value=2.5e-07  Score=58.33  Aligned_cols=66  Identities=15%  Similarity=0.352  Sum_probs=47.8

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cc-----------------cCCC-------cceeeEEEccC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQ-----------------IPGR-------TSSTSLVINPV  111 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~-----------------~~~~-------~~~~~l~~~~~  111 (150)
                      ..+....+.+|+.+.|.|. . .|   .+.+.|+++.  ..                 ....       .....|.|.++
T Consensus         5 q~p~~~~v~~G~~v~L~C~-~~~~---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            5 QSPRNKVAVTGGKVTLSCN-QTNN---HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             EECSEEEEETTCCEEEEEE-ECSC---CSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             ECccceEEeCCCEEEEEee-cCCC---CccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            3456678899999999999 6 77   8999999851  10                 0000       01347999999


Q ss_pred             CCCCCceEEEEEEeCCC
Q psy11131        112 GREDRGIYQCIARRSDG  128 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~~g  128 (150)
                      ..+|+|.|.|.+.+..|
T Consensus        81 ~~~DsG~Y~C~~~~~~g   97 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQ   97 (238)
T ss_dssp             CGGGCEEEEEEEEC---
T ss_pred             CcccCeeEEEEEEeCCC
Confidence            99999999999998754

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.65  E-value=2.9e-07  Score=52.73  Aligned_cols=68  Identities=25%  Similarity=0.323  Sum_probs=50.3

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-C--CCCCCcEEEEeec--Cccc----CCCc----------ceeeEEEccCCCCCCc
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-P--YDSGPYLIAWFKD--GRQI----PGRT----------SSTSLVINPVGREDRG  117 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~--p~~~~~~~~w~~~--~~~~----~~~~----------~~~~l~~~~~~~~~~g  117 (150)
                      +...|....+.+|+.+.|.|... .  +   .+.+.|++.  +...    ....          ....|.|.++..+|+|
T Consensus         3 V~Q~p~~v~v~~G~svtL~C~~s~~~~~---~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG   79 (126)
T 3moq_A            3 VDQTPRTATKETGESLTINCVLRDASFE---LKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSG   79 (126)
T ss_dssp             EEEECSEEEEETTCCEEEEEEEESCSSC---CCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             eEECCceEEEeCCCCEEEEEEeecCccC---CceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCE
Confidence            34456677889999999999987 4  4   678999874  2211    1111          1457999999999999


Q ss_pred             eEEEEEEeCC
Q psy11131        118 IYQCIARRSD  127 (150)
Q Consensus       118 ~y~C~~~~~~  127 (150)
                      .|.|.+.+..
T Consensus        80 ~Y~C~~~~~~   89 (126)
T 3moq_A           80 TYKCQAFYVF   89 (126)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEcC
Confidence            9999998754

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.64  E-value=2.8e-07  Score=58.39  Aligned_cols=66  Identities=18%  Similarity=0.350  Sum_probs=49.4

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec----------------CcccCCC---cc---------eeeEEEc
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD----------------GRQIPGR---TS---------STSLVIN  109 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~----------------~~~~~~~---~~---------~~~l~~~  109 (150)
                      ..+....+.+|+.+.|.|.+. .+   .+.+.|++.                +......   .+         ...|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            6 QHPSWVISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             EECSEEEEETTSCEEEEEEESSSC---CCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             ECCcEEEEeCCCcEEEEeEecCCC---ceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            345667889999999999998 77   889999882                1111111   11         2379999


Q ss_pred             cCCCCCCceEEEEEEeCC
Q psy11131        110 PVGREDRGIYQCIARRSD  127 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~~~  127 (150)
                      ++..+|+|.|.|.+.+..
T Consensus        83 ~v~~~D~G~Y~C~~~~~~  100 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSG  100 (246)
T ss_dssp             SCCGGGCEEEEEEECCSS
T ss_pred             CCCHHHCEEEEEEEecCC
Confidence            999999999999998653

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.64  E-value=2e-07  Score=51.86  Aligned_cols=64  Identities=25%  Similarity=0.416  Sum_probs=47.8

Q ss_pred             eCCCcEEEecCCcEEEEEEec-C--CCCCCcEEEEeecC--cc----cCCCc----------ceeeEEEccCCCCCCceE
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-P--YDSGPYLIAWFKDG--RQ----IPGRT----------SSTSLVINPVGREDRGIY  119 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~--p~~~~~~~~w~~~~--~~----~~~~~----------~~~~l~~~~~~~~~~g~y  119 (150)
                      ..|....+.+|+.+.|.|... .  +   .+.+.|++..  ..    +....          ....|.|.++..+|+|.|
T Consensus         5 q~p~~~~v~~G~~v~L~C~~~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   81 (108)
T 2coq_A            5 QTPRIATKETGESLTINCVLRDTACA---LDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTY   81 (108)
T ss_dssp             EECSEEEECTTCCEEEEEEECCSSEE---EEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eCCceEEEcCCCCEEEEeEeCCCcCC---CCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEE
Confidence            345667888999999999987 3  3   5789998753  21    11111          145799999999999999


Q ss_pred             EEEEEe
Q psy11131        120 QCIARR  125 (150)
Q Consensus       120 ~C~~~~  125 (150)
                      .|.+.+
T Consensus        82 ~C~~~~   87 (108)
T 2coq_A           82 KCKAYR   87 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999987

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.64  E-value=1e-07  Score=52.35  Aligned_cols=50  Identities=28%  Similarity=0.358  Sum_probs=40.3

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      ++..+.++.+..    ..|.|.++..+|+|.|+|.+.|..|..+..+.|.|.+.
T Consensus        48 ~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           48 ELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             ECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEECC
Confidence            344445655544    46999999999999999999999999988899988764

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.64  E-value=5.1e-08  Score=55.78  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR   56 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~   56 (150)
                      +.|.|.+++..|+|.|+|.|.|..|...+.+.|.|...|.
T Consensus        63 ~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~~P~  102 (126)
T 1he7_A           63 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPF  102 (126)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred             eEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEcCCC
Confidence            5799999999999999999999999999999998887653

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.63  E-value=4.3e-07  Score=57.83  Aligned_cols=85  Identities=21%  Similarity=0.318  Sum_probs=56.3

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCC--CCcEEEEeecCc--cc------------CCCcc--------eeeEEEccC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDS--GPYLIAWFKDGR--QI------------PGRTS--------STSLVINPV  111 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~--~~~~~~w~~~~~--~~------------~~~~~--------~~~l~~~~~  111 (150)
                      +...+....+.+|+.+.|.|.+. .+..  ..+.+.|++++.  ..            ....+        ...|.|.++
T Consensus        37 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  116 (252)
T 3bkj_L           37 MTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRV  116 (252)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCC
Confidence            33445667789999999999998 4300  037899988541  11            00111        237999999


Q ss_pred             CCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        112 GREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      ..+|.|.|.|.+.+..+........+.|..
T Consensus       117 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  146 (252)
T 3bkj_L          117 EAEDLGVYYCFQASLVPLTFGAGTKLELKR  146 (252)
T ss_dssp             CGGGCEEEEEEECSBSSCEECCCEEEEECC
T ss_pred             CcccCEEEEEEEEcCCccEECCCEEEEEeC
Confidence            999999999999886552223334566654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.63  E-value=2.8e-07  Score=58.49  Aligned_cols=84  Identities=24%  Similarity=0.399  Sum_probs=55.8

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCC--CCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDS--GPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGR  113 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~--~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~  113 (150)
                      ..|....+.+|+.+.|.|.+. .|..  ..+.+.|++..  ..+.            ...+        ...|.|.++..
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   85 (247)
T 1svz_A            6 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA   85 (247)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCH
Confidence            345667889999999999998 5400  03789998742  1110            0111        24799999999


Q ss_pred             CCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        114 EDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       114 ~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      +|+|.|.|.+.+..+........|.|..+
T Consensus        86 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  114 (247)
T 1svz_A           86 EDLGIYYCFQGSHFPPTFGGGTKLEIKGG  114 (247)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             HHCEEEEEEEccCCccEECCCEEEEEECC
Confidence            99999999999875422334456677654

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.63  E-value=4.4e-07  Score=50.71  Aligned_cols=67  Identities=18%  Similarity=0.329  Sum_probs=49.6

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--c---cC---------CCcc--------eeeEEEccCCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--Q---IP---------GRTS--------STSLVINPVGR  113 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~---~~---------~~~~--------~~~l~~~~~~~  113 (150)
                      +...|..+.+.+|+.+.|.|... .+   .+.+.|++...  .   +.         ...+        ...|.|.++..
T Consensus         7 v~q~p~~~~~~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~   83 (111)
T 1i3g_L            7 LTQSHKFMSTSVGDRVSITCKASQDV---GTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQS   83 (111)
T ss_dssp             EEESCSEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEEeCCEEEEcCCCCEEEEEEeCCCC---CCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCH
Confidence            33456667788999999999998 66   67899987532  1   10         0111        34799999999


Q ss_pred             CCCceEEEEEEeC
Q psy11131        114 EDRGIYQCIARRS  126 (150)
Q Consensus       114 ~~~g~y~C~~~~~  126 (150)
                      +|+|.|.|.+.+.
T Consensus        84 ~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           84 EDLADYFCQQYSS   96 (111)
T ss_dssp             GGCSEEEEEECSS
T ss_pred             HHCEEEEEEEecC
Confidence            9999999999864

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.63  E-value=1.4e-06  Score=49.71  Aligned_cols=82  Identities=13%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc------cC-CC-------cc----------eeeEEEccCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ------IP-GR-------TS----------STSLVINPVGRE  114 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~------~~-~~-------~~----------~~~l~~~~~~~~  114 (150)
                      .+..+.+.+|+.+.|.|... ...  ...+.|++....      +. ..       .+          ...|.|.++..+
T Consensus         8 ~p~~v~~~~G~svtL~C~~s~~~~--~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~   85 (124)
T 2nms_A            8 GPTTVNGLERGSLTVQCVYRSGWE--TYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKT   85 (124)
T ss_dssp             CCSEEEEETTCCEEEEEEECTTCT--TSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cccEEEEeCCCCEEEEeEEeCCcc--cccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHH
Confidence            35567788999999999987 321  347889874321      00 00       00          357999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      |+|.|.|.+..... .....+.|.|..+|.
T Consensus        86 Dsg~Y~C~~~~~~~-~~~~~v~L~V~~~~~  114 (124)
T 2nms_A           86 DADTYWCGIEKTGN-DLGVTVQVTIDPAPV  114 (124)
T ss_dssp             GCEEEEEEEEETTE-EEEEEEEEEEECCC-
T ss_pred             HCEEEEEEEEcCCC-CccEEEEEEEeCCCc
Confidence            99999999986543 455667888876554

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.62  E-value=1.7e-08  Score=63.11  Aligned_cols=61  Identities=13%  Similarity=0.277  Sum_probs=48.0

Q ss_pred             EecCCcEEEEEEec-C---CCCCCcEEEEeecCcccCCCc----------c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         66 VHLDGSANFQCEIT-P---YDSGPYLIAWFKDGRQIPGRT----------S---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        66 ~~~g~~~~l~C~~~-~---p~~~~~~~~w~~~~~~~~~~~----------~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +.+|+.+.|.|.+. .   |.  .+.+.|++++..+....          .   ...|.|.++..+|.|.|.|.+.+..+
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~  100 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDP--DVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDL  100 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSC--CEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTC
T ss_pred             hccCCCeeEEEEEcCCccCCC--ceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcC
Confidence            67899999999998 4   51  38999999886653221          0   34688889999999999999999876

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.62  E-value=6.2e-08  Score=53.91  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=33.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      .+|.|.+++.+|+|.|+|.+.|..|..++.+.|.|.
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           72 FELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEEecCCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence            579999999999999999999999999999999886

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.61  E-value=2.8e-08  Score=62.49  Aligned_cols=68  Identities=15%  Similarity=0.256  Sum_probs=38.6

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--cc------------CCCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--QI------------PGRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~~------------~~~~~--------~~~l~~~~~~~~  114 (150)
                      ...+....+.+|+.+.|.|.+. .|   .+.+.|+++..  ..            ....+        ...|.|.++..+
T Consensus        27 ~~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  103 (233)
T 3bqu_C           27 TQSPASLSMSIGEKVTIRCITSTDI---DDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE  103 (233)
T ss_dssp             EEECSBC-------CCEEEEEEEEE---SSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred             EEcCCeEEEecCCCEEEEEecCCcC---CCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence            3345566788999999999998 77   67799987532  11            00011        237999999999


Q ss_pred             CCceEEEEEEeCCC
Q psy11131        115 DRGIYQCIARRSDG  128 (150)
Q Consensus       115 ~~g~y~C~~~~~~g  128 (150)
                      |+|.|.|.+.+..+
T Consensus       104 D~G~Y~C~~~~~~~  117 (233)
T 3bqu_C          104 DVADYYCLQSDNLP  117 (233)
T ss_dssp             CCSEEEEEECSSSS
T ss_pred             HCEEEEEEEecCCc
Confidence            99999999987654

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.61  E-value=4.9e-07  Score=52.36  Aligned_cols=86  Identities=17%  Similarity=0.310  Sum_probs=55.3

Q ss_pred             EeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeec---CcccC----CCc--------ceeeEEEccCCCCCCceEEEE
Q psy11131         58 DVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKD---GRQIP----GRT--------SSTSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~---~~~~~----~~~--------~~~~l~~~~~~~~~~g~y~C~  122 (150)
                      ...|....+.+|+.+.|.|.....   ...+.|++.   +....    ...        ....|.|.++..+|+|.|.|.
T Consensus        22 ~Q~p~~~~v~~G~svtL~C~~s~~---~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   98 (134)
T 3kg5_A           22 WQSPRFIARKRGFTVKMHCYMNSA---SGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQ   98 (134)
T ss_dssp             EEECSEEEEETTCCEEEEEECCCT---TCCCEEEEESSSSSCCEECCCCTTTEEEEECSSEEEEEECSCCTTTCEEEEEE
T ss_pred             EEeCCEEEEeCCCCEEEEEEECCC---CceEEEEEECCCCCCcEEEEEECCeEEEEccCCEEEEEECCCCcCcCEEEEEE
Confidence            345666788999999999998732   456889876   32211    011        146799999999999999999


Q ss_pred             EEeCCCC--ceeeeEEEEEcCcCccc
Q psy11131        123 ARRSDGD--VAQGSAELQLGGTRNIK  146 (150)
Q Consensus       123 ~~~~~g~--~~~~~~~l~v~~~p~~~  146 (150)
                      +.+..+.  ....-..|.|.+.|...
T Consensus        99 ~~~~~~~~~~fg~GT~L~V~~~p~~~  124 (134)
T 3kg5_A           99 QKCNNTSEVYQGCGTELRVMGFSTLA  124 (134)
T ss_dssp             EECTTTCCEEECCCEEEEEECC----
T ss_pred             EEcCCCCceEECCCEEEEEecCCCHH
Confidence            9875221  11223456666655443

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.60  E-value=6.7e-07  Score=50.18  Aligned_cols=68  Identities=22%  Similarity=0.388  Sum_probs=47.8

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCC---CCCcEEEEeecC--ccc------------CCCcc--------eeeEEEccCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYD---SGPYLIAWFKDG--RQI------------PGRTS--------STSLVINPVG  112 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~---~~~~~~~w~~~~--~~~------------~~~~~--------~~~l~~~~~~  112 (150)
                      ..|..+.+.+|+.+.|.|... .+.   ...+.+.|++..  ...            ....+        ...|.|.++.
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   85 (114)
T 1eeq_A            6 QSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQ   85 (114)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCC
Confidence            345667889999999999987 540   002689998753  111            00111        3479999999


Q ss_pred             CCCCceEEEEEEeC
Q psy11131        113 REDRGIYQCIARRS  126 (150)
Q Consensus       113 ~~~~g~y~C~~~~~  126 (150)
                      .+|+|.|.|.+.+.
T Consensus        86 ~~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           86 AEDVAVYYCQQYYS   99 (114)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             cccCEEEEEEEeeC
Confidence            99999999999864

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.59  E-value=5.4e-07  Score=51.54  Aligned_cols=85  Identities=22%  Similarity=0.424  Sum_probs=54.9

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CC-CCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PY-DSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGR  113 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~  113 (150)
                      ...|..+.+.+|+.+.|.|... .+ ....+.+.|++..  ....            ...+        ...|.|.++..
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~   84 (126)
T 4ffy_L            5 TQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVET   84 (126)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCH
Confidence            3446667889999999999997 43 0004578998742  1110            0001        45799999999


Q ss_pred             CCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        114 EDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       114 ~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      +|+|.|.|.+.+........-..|.|.+.
T Consensus        85 ~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~  113 (126)
T 4ffy_L           85 DDAATYYCQQNNEDPYTFGGGTKLEIKGG  113 (126)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEEC-
T ss_pred             HHCEEEEEEEecCCCcEECCCEEEEEecC
Confidence            99999999998754322233345666543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=7.6e-08  Score=54.32  Aligned_cols=47  Identities=30%  Similarity=0.388  Sum_probs=39.3

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      +.++.... +.|.|.+++.+|+|.|+|.+.|..|.....+.|.|..++
T Consensus        53 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           53 DSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             STTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCS
T ss_pred             CCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCC
Confidence            44554443 889999999999999999999999988888889988654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.59  E-value=1.7e-07  Score=51.00  Aligned_cols=37  Identities=35%  Similarity=0.400  Sum_probs=33.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      ..|.|.++..+|+|.|+|.+.|..|.....+.|.|.+
T Consensus        62 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEec
Confidence            3799999999999999999999999888888888864

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.59  E-value=5e-07  Score=50.27  Aligned_cols=64  Identities=19%  Similarity=0.325  Sum_probs=46.4

Q ss_pred             CCcEEEecCCcEEEEEE-ec-CCCCCCcEEEEeecCcccC------------CCcc----------eeeEEEccCCCCCC
Q psy11131         61 PPLLSVHLDGSANFQCE-IT-PYDSGPYLIAWFKDGRQIP------------GRTS----------STSLVINPVGREDR  116 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~-~~-~p~~~~~~~~w~~~~~~~~------------~~~~----------~~~l~~~~~~~~~~  116 (150)
                      |....+.+|+++.|.|. .. .+.  .+.+.|++......            ...+          ...|.|.++..+|+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~--~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   84 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIA--SNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   84 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGG--GSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCC--CccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhC
Confidence            56678899999999999 66 431  36799987652110            0011          34799999999999


Q ss_pred             ceEEEEEEeC
Q psy11131        117 GIYQCIARRS  126 (150)
Q Consensus       117 g~y~C~~~~~  126 (150)
                      |.|.|.+.+.
T Consensus        85 G~Y~C~~~~~   94 (109)
T 1pew_A           85 ADYYCQSYDA   94 (109)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEEEeC
Confidence            9999999874

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.58  E-value=6.2e-07  Score=57.64  Aligned_cols=86  Identities=17%  Similarity=0.296  Sum_probs=57.5

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCC---CCcEEEEeecC--cccC------------CCcc--------eeeEEEcc
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDS---GPYLIAWFKDG--RQIP------------GRTS--------STSLVINP  110 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~---~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~  110 (150)
                      +...|..+.+.+|+.+.|.|.+. .+..   ..+.+.|++..  ..+.            ...+        ...|.|.+
T Consensus         8 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~   87 (264)
T 2gjj_A            8 LTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGS   87 (264)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             eEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECC
Confidence            34456677889999999999987 4400   04689998752  2110            0111        34799999


Q ss_pred             CCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        111 VGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       111 ~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      +..+|+|.|.|.+.+..+........|.|..+
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~  119 (264)
T 2gjj_A           88 VKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRG  119 (264)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEECC
T ss_pred             CCHHHCEEEEEEEecCCccEecCCEEEEEEcC
Confidence            99999999999999765422233456666654

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.58  E-value=1.9e-07  Score=52.76  Aligned_cols=50  Identities=22%  Similarity=0.263  Sum_probs=38.0

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEEecCceEE
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVSTPYRVD   58 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~~~~~~~   58 (150)
                      ..|+.+.. .+|.|.+++.+|+|.|+|.+.. ..|.....+.|.|..+|...
T Consensus        62 ~~R~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~~~  113 (117)
T 3q0h_A           62 KDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE  113 (117)
T ss_dssp             TTTEEECSTTCEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC----
T ss_pred             cCcEEeCCceEEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEEEccCccc
Confidence            35776644 7899999999999999998754 55777888999999876543

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.58  E-value=1.2e-07  Score=62.33  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             cEEEecCCcEEEEEEec-C-----CCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         63 LLSVHLDGSANFQCEIT-P-----YDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~-----p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ...+..|+.+.|.|.+. .     |   .+.+.|.+++..+.....        .+.|.|.++...|.|.|.|.+.+..+
T Consensus         9 ~~~v~~G~~v~l~C~~~~~~~~~~~---~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~   85 (313)
T 2d9q_B            9 APIVHLGDPITASCIIKQNCSHLDP---EPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSL   85 (313)
T ss_dssp             CSEECTTCCEEEEECCCTTSCSSCS---CSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSE
T ss_pred             CcEEcCCCCEEEEEEECCCCCCCCc---ccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCc
Confidence            34578999999999998 6     4   688999998877643210        16799999999999999998865433


Q ss_pred             CceeeeEEEEEcCcCc
Q psy11131        129 DVAQGSAELQLGGTRN  144 (150)
Q Consensus       129 ~~~~~~~~l~v~~~p~  144 (150)
                       .....+.|.+..+|.
T Consensus        86 -~~~~~~~l~v~~~P~  100 (313)
T 2d9q_B           86 -QILDQVELRAGYPPA  100 (313)
T ss_dssp             -EEEEEEEEEECCCCC
T ss_pred             -eeEEEEEEccCCCCC
Confidence             344567777776654

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.57  E-value=1.4e-07  Score=52.35  Aligned_cols=47  Identities=28%  Similarity=0.423  Sum_probs=38.4

Q ss_pred             cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131          6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus         6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +..+.++.+..    ..|.|.++..+|+|.|+|.+.|..|.....+.|.|.
T Consensus        55 l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           55 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             CCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            33455665543    689999999999999999999999988888888875

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.57  E-value=3.1e-07  Score=51.59  Aligned_cols=81  Identities=12%  Similarity=0.138  Sum_probs=54.4

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc-------c--------cC--CCcc----------eeeEEEccCC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR-------Q--------IP--GRTS----------STSLVINPVG  112 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~-------~--------~~--~~~~----------~~~l~~~~~~  112 (150)
                      +..+.+.+|+.+.|.|... .... ...+.|++...       .        ..  ...+          ...|.|.++.
T Consensus         4 p~~v~~~~G~~v~L~C~~~~~~~~-~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   82 (115)
T 2or7_A            4 HTAVQGLAGHPVTLPCIYSTHLGG-IVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTV   82 (115)
T ss_dssp             --CEEEETTSCEEECCBCCHHHHC-SCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCC
T ss_pred             ccEEEEEcCCCEEEEEEeecCCCC-CEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCC
Confidence            4557788999999999986 3100 46789987641       0        00  0001          3579999999


Q ss_pred             CCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        113 REDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       113 ~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      .+|+|.|.|.+..... .....+.|.|..++
T Consensus        83 ~~DsG~Y~C~v~~~~~-~~~~~v~L~V~~~~  112 (115)
T 2or7_A           83 VGDGGPYCCVVEIPGA-FHFVDYMLEVKPEL  112 (115)
T ss_dssp             GGGCEEEEEEECCTTS-CEEEEEEEEEESCC
T ss_pred             HHHCEEEEEEEECCCc-eeEEEEEEEEcCCC
Confidence            9999999999986544 34666777775543

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.57  E-value=2.2e-07  Score=50.49  Aligned_cols=49  Identities=29%  Similarity=0.361  Sum_probs=39.6

Q ss_pred             ecCCCCceEEeC--C--eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131          5 LVLPGPRTRVLG--P--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus         5 ~~~~~~~~~~~~--~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      ++..+.++.+..  +  .|.|.+++.+|+|.|+|.+.|..|.....+.|.|.+
T Consensus        42 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   94 (97)
T 2bk8_A           42 QLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG   94 (97)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEETT
T ss_pred             ECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEEEe
Confidence            344556665532  3  899999999999999999999999888888888874

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.57  E-value=2.6e-07  Score=59.46  Aligned_cols=86  Identities=22%  Similarity=0.350  Sum_probs=54.5

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCC--CCCcEEEEeecC--cccC------------CCcc--------eeeEEEcc
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYD--SGPYLIAWFKDG--RQIP------------GRTS--------STSLVINP  110 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~--~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~  110 (150)
                      .+...+....+.+|+.+.|.|.+. .+.  ...+.+.|++..  ....            ...+        ...|.|.+
T Consensus        17 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   96 (268)
T 1x9q_A           17 VMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINR   96 (268)
T ss_dssp             CEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             eEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECC
Confidence            344455666788999999999988 540  003789998753  2110            0111        34799999


Q ss_pred             CCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        111 VGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       111 ~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      +..+|+|.|.|.+.+..+........|.|..
T Consensus        97 v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~  127 (268)
T 1x9q_A           97 VEAEDLGVYFCSQSTHVPWTFGGGTKLEIKS  127 (268)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEC---
T ss_pred             CChhHCEEEEEEEecCCCceEcCCEEEEEcc
Confidence            9999999999999986442222334555544

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.57  E-value=7.3e-07  Score=56.43  Aligned_cols=78  Identities=18%  Similarity=0.316  Sum_probs=52.1

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--------------CcccCC-----C--------cceeeEEEcc
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--------------GRQIPG-----R--------TSSTSLVINP  110 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--------------~~~~~~-----~--------~~~~~l~~~~  110 (150)
                      ..+....+.+|+.+.|.| .. .+   .+.+.|++.              +.....     .        .....|.|.+
T Consensus         7 ~~p~~v~v~~G~~v~L~C-~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   82 (245)
T 4ei6_B            7 QIPSHQIIDMGQMVTLNC-DPVSN---HLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQP   82 (245)
T ss_dssp             EECSEEEEETTCCEEEEE-ECCTT---CCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECS
T ss_pred             eCCceEEecCCCCEEEEE-EcCCC---CCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECC
Confidence            345667889999999999 54 77   789999871              100000     0        0134899999


Q ss_pred             CCCCCCceEEEEEEeCC---CCceeeeEEEEEc
Q psy11131        111 VGREDRGIYQCIARRSD---GDVAQGSAELQLG  140 (150)
Q Consensus       111 ~~~~~~g~y~C~~~~~~---g~~~~~~~~l~v~  140 (150)
                      +..+|+|.|.|.+.+..   .........+.|.
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~  115 (245)
T 4ei6_B           83 TALEDSAVYFCASSFWGAYAEQFFGPGTRLTVL  115 (245)
T ss_dssp             CCGGGCEEEEEEEECSSTTCCCEECCCEEEEEE
T ss_pred             CCHhHCEEEEEEEccCCCcceEEEcCCcEEEEe
Confidence            99999999999998532   1123334455555

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.57  E-value=2.4e-07  Score=49.21  Aligned_cols=46  Identities=20%  Similarity=0.406  Sum_probs=34.8

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      ++..+.++.+..    ..|.|.++..+|+|.|.|.+.+.    +..+.|.|.+|
T Consensus        35 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~----~~~a~l~V~eP   84 (84)
T 2lu7_A           35 RLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD----SRIFLVSVEEP   84 (84)
T ss_dssp             ECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT----CEEEEEEECCC
T ss_pred             EccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE----EEEEEEEEECC
Confidence            455666766644    47999999999999999998653    56677777653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.57  E-value=1.2e-07  Score=51.13  Aligned_cols=36  Identities=25%  Similarity=0.295  Sum_probs=32.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..|.|.++..+|+|.|+|.+.|..|.....+.|.|+
T Consensus        58 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           58 TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            579999999999999999999999988888888764

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.57  E-value=2.2e-07  Score=57.49  Aligned_cols=63  Identities=21%  Similarity=0.385  Sum_probs=48.1

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~~g  117 (150)
                      |....+.+|+.+.|.|.+. .|   .+.+.|+++.  ..+.            ...+        ...|.|.++..+|+|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   82 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLP---KNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA   82 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGG---GSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS
T ss_pred             CCeEEEeCCCcEEEEEecCCCC---CCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCE
Confidence            5667889999999999987 77   6789998743  2210            0111        347999999999999


Q ss_pred             eEEEEEEeC
Q psy11131        118 IYQCIARRS  126 (150)
Q Consensus       118 ~y~C~~~~~  126 (150)
                      .|.|.+.|.
T Consensus        83 ~Y~C~~~n~   91 (212)
T 1nfd_E           83 AYYCLSSYG   91 (212)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEEcc
Confidence            999999973

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.57  E-value=2e-07  Score=50.68  Aligned_cols=48  Identities=23%  Similarity=0.479  Sum_probs=38.7

Q ss_pred             cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131          6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus         6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      +..+.++.+..    ..|.|.++..+|+|.|+|.+.|..|.....+.|.|.+
T Consensus        47 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           47 ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             CCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEEe
Confidence            34455665544    2799999999999999999999989888888888763

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.56  E-value=4e-07  Score=52.16  Aligned_cols=65  Identities=26%  Similarity=0.388  Sum_probs=48.8

Q ss_pred             eCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEEeecCcc----cC-C-C----------------cceeeEEEccCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAWFKDGRQ----IP-G-R----------------TSSTSLVINPVGRE  114 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~~~----~~-~-~----------------~~~~~l~~~~~~~~  114 (150)
                      ..+....+.+|+.+.|.|... . +   .+.+.|++....    +. . .                .....|.|.++..+
T Consensus         8 q~p~~~~v~~G~~vtL~C~~~~~~~---~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (127)
T 2jju_A            8 QPEKSVSVAAGESATLRCAMTSLIP---VGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPA   84 (127)
T ss_dssp             CCCSEEEEETTSCEEECCEESCCCS---CCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGG
T ss_pred             eeCCeEEEeCCCCEEEEEEEeCCCC---CCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHH
Confidence            345667889999999999997 4 5   678999986421    10 0 0                01357999999999


Q ss_pred             CCceEEEEEEeC
Q psy11131        115 DRGIYQCIARRS  126 (150)
Q Consensus       115 ~~g~y~C~~~~~  126 (150)
                      |+|.|.|.+.+.
T Consensus        85 DsG~Y~C~~~~~   96 (127)
T 2jju_A           85 DAGTYYCVKFRK   96 (127)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             HCEEEEEEEEcC
Confidence            999999999875

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.56  E-value=2.4e-07  Score=50.41  Aligned_cols=39  Identities=33%  Similarity=0.513  Sum_probs=34.2

Q ss_pred             EeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         14 VLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        14 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ...++|.|.+++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus        59 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           59 DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             EETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             cCCCEEEEeCCChhhCEEEEEEecCCCCccccEEEEEEe
Confidence            344789999999999999999999998888888888775

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=1.4e-07  Score=53.22  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=35.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ..|.|.++..+|+|.|+|.+.|..|.....+.|.|.++|
T Consensus        79 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           79 TVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred             EEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence            459999999999999999999999988888999988754

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.55  E-value=8.7e-07  Score=56.60  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--ccC-----------------------CCcceeeEEEcc
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--QIP-----------------------GRTSSTSLVINP  110 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~~~-----------------------~~~~~~~l~~~~  110 (150)
                      +...+....+.+|+.+.|.|.+. .|   .+.+.|++...  ...                       .......|.|.+
T Consensus         6 v~q~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   82 (256)
T 3tf7_C            6 VTQPDARVTVSEGASLQLRCKYSYSA---TPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKAS   82 (256)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESS
T ss_pred             EEecCceEEecCCCeEEEEEEeCCCC---CceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECC
Confidence            34456677889999999999998 88   89999987321  100                       000134699999


Q ss_pred             CCCCCCceEEEEEEeCCCC---ceeeeEEEEEcC
Q psy11131        111 VGREDRGIYQCIARRSDGD---VAQGSAELQLGG  141 (150)
Q Consensus       111 ~~~~~~g~y~C~~~~~~g~---~~~~~~~l~v~~  141 (150)
                      +..+|+|.|.|.+.+..+.   .......|.|..
T Consensus        83 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           83 VHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             CCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             CCcccCEEEEEEEecCCCccceEECCCeEEEEeC
Confidence            9999999999999986541   122234555554

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.55  E-value=2.2e-07  Score=52.92  Aligned_cols=48  Identities=23%  Similarity=0.403  Sum_probs=39.0

Q ss_pred             CCCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce
Q psy11131          8 PGPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR   56 (150)
Q Consensus         8 ~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~   56 (150)
                      .+.|+.+..     .+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.
T Consensus        52 ~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           52 KNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMK  104 (124)
T ss_dssp             CSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-SEEEEEEEEEEECC--
T ss_pred             cCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-CCCcEEEEEEEEeCCC
Confidence            455666542     68999999999999999999998 8888889999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	7e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-08
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-06
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-04
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.001
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-06
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-06
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.002
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	8e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	0.002
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	6e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	6e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.001
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	0.002
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	7e-05
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	5e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	7e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	9e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	0.003
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.001
d2diba1	115	b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens	2e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.002
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	2e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.002
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.001
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.002
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-04
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-04
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.002
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	7e-04
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	0.001
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.001
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.001
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	0.001
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.001
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.002
d1sy6a1	81	b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragme	0.003
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.003
d1jbja1	86	b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fra	0.003
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	0.003
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.003
d2dj4a1	101	b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens	0.003
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.004
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.004

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.2 bits (114), Expect = 7e-09
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
           R  V    L I+GV   D G Y C ++N  G+   E  +QV+
Sbjct: 47 GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.9 bits (95), Expect = 3e-06
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 52  STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---RTSSTSLVI 108
           S P        ++ V         C++T        + W  + + + G     + + LVI
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP--APNVVWSHNAKPLSGGRATVTDSGLVI 58

Query: 109 NPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
             V   D+G Y C A    GD       +Q
Sbjct: 59  KGVKNGDKGYYGCRATNEHGD-KYFETLVQ 87

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.3 bits (111), Expect = 3e-08
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
           L I+ V   D G Y C   +   +  A V L+V  P+   +NP 
Sbjct: 83  LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW-INPG 125

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 3e-06
 Identities = 12/36 (33%), Positives = 13/36 (36%)

Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          G  L I     E  G Y     N  G   A+V L V
Sbjct: 55 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 11/86 (12%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVG 112
           P    V    S     ++T     P    W K  +QI              + L I    
Sbjct: 7   PEDQKVRAGESVELFGKVTGTQ--PITCTWMKFRKQIQESEHMKVENSENGSKLTILAAR 64

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
           +E  G Y  +     G   Q    L 
Sbjct: 65  QEHCGCYTLLVENKLG-SRQAQVNLT 89

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-06
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           I  +EG   ED G Y  +  N  GE    + ++V
Sbjct: 95  IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 41.0 bits (95), Expect = 4e-06
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 24  VTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
           V  +D   Y C + N  GEAT    L V T
Sbjct: 72  VCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 45  AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITP-------YDSGPYLIAWFKDGRQI 97
           AE +               + V    +A F C++         +      +   +  +  
Sbjct: 1   AEEK--PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQID 58

Query: 98  PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
                + SL I+ V  +D   Y C A  S G+ A  +AEL 
Sbjct: 59  YDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE-ATCTAELL 98

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-06
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 12/87 (13%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---------RTSSTSLVINPV 111
             L +V    +  F+C           + W K+G++            R    SL++  V
Sbjct: 12  KRLHAVPAANTVKFRCPAGGNP--MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 69

Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQ 138
              D+G Y C+     G     +  L 
Sbjct: 70  VPSDKGNYTCVVENEYGS-INHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 6e-05
 Identities = 11/34 (32%), Positives = 12/34 (35%)

Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           L +E V   D G Y C   N  G       L V
Sbjct: 63 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 7e-06
 Identities = 10/28 (35%), Positives = 12/28 (42%)

Query: 24 VTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          V A D G Y     N  G+  AE  L +
Sbjct: 62 VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYD------SGPYLIAWFKDGRQIPGRTSSTSLVIN 109
           R+   P  ++V+   SA F C+                +       Q+      ++  I+
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            V   D G Y  +   S+G   +    L 
Sbjct: 61  SVQASDEGNYSVVVENSEGK-QEAEFTLT 88

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-06
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 59  VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 118
           V P  L+V  +      CE       P  I W++   +I G   S S V+N  G     +
Sbjct: 6   VEPKDLAVPPNAPFQLSCEAV-GPPEPVTIVWWRGTTKIGGPAPSPS-VLNVTGVTQSTM 63

Query: 119 YQCIARRSDGDVAQGSAELQL 139
           + C A    G  +  +A + L
Sbjct: 64  FSCEAHNLKGLASSRTATVHL 84

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-05
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWF---------KDGRQIPGRTSSTSLVINPVGRE 114
           + V+    A FQC           +            K+ +    R    S  +    + 
Sbjct: 11  VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR 70

Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
           D G Y+C+ R   G      AEL
Sbjct: 71  DAGKYRCMIRTEGGVGISNYAEL 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATA-EVRLQV 51
            +   T  D+G YRC     GG   +    L V
Sbjct: 62 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (88), Expect = 3e-05
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L I  V  +D G Y   + N  G     V L V
Sbjct: 59 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.6 bits (81), Expect = 3e-04
 Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 7/89 (7%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST------SLVIN 109
           R  V P    V    SANF C +                 +   +           L IN
Sbjct: 3   RFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTIN 62

Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
            V  +D+G Y   A+ S G   +    L 
Sbjct: 63  RVKGDDKGEYTVRAKNSYGT-KEEIVFLN 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-05
 Identities = 13/89 (14%), Positives = 21/89 (23%), Gaps = 8/89 (8%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLI--------AWFKDGRQIPGRTSSTSLVINPVG 112
           P  L+V         C +   +                 +    +  +     L +  V 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 113 REDRGIYQCIARRSDGDVAQGSAELQLGG 141
           R D G Y C               L + G
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 4e-04
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 21 IEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQV 51
          ++ V   D+G Y C   + G    +  V L V
Sbjct: 58 LKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 6e-05
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 11  RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
              V    L +   T  ++G Y   ++N  G+A+A +       
Sbjct: 57  NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.5 bits (86), Expect = 6e-05
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L    +  EDSG Y+C + N  G   A   L V
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 64  LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQC 121
               +     + C  +  P  +  +L        Q     S   L  + +  ED G+YQC
Sbjct: 11  TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQC 70

Query: 122 IARRSDGDVAQGSAELQ 138
           +A    G     SAEL 
Sbjct: 71  VAENKHGT-VYASAELT 86

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.5 bits (86), Expect = 6e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          +L I+ V  ED GTY C + NI G  T + R+ +
Sbjct: 56 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 13/78 (16%), Positives = 18/78 (23%), Gaps = 1/78 (1%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
           P             +C                  +     +S   L I  V  ED G Y+
Sbjct: 12  PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYE 71

Query: 121 CIARRSDGDVAQGSAELQ 138
           C A    G        + 
Sbjct: 72  CEAENIKGR-DTYQGRII 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 7e-05
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
             L I  V   D   Y C + N  GE  A + L+V
Sbjct: 62 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.2 bits (80), Expect = 5e-04
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 54  PYRVDVNPPL--LSVHLDGSANFQCE--------ITPYDSGPYLIAWFKDGRQIPGRTSS 103
           P  V     +   + +L  S    C+        ++    G  +    +D  +      S
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62

Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           + L I  V + D   Y CIA    G+    S  L+
Sbjct: 63  SELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLK 96

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 7e-05
 Identities = 9/33 (27%), Positives = 11/33 (33%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           L I       +G YRC  S       +   L V
Sbjct: 74  LHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 9e-05
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           +L I  VT ED+G Y C + N  G +     L V
Sbjct: 75  VLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 23/106 (21%), Positives = 31/106 (29%), Gaps = 24/106 (22%)

Query: 54  PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS---------- 103
           P      P   S  + G   F C++         I W K   +   +             
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 104 -----------TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
                        L I  V  ED G Y C+A  S G ++  SA L 
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG-ISFHSAWLT 107

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
           + I       +G YRC  +      +    L+V   
Sbjct: 70  MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 105

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 22 EGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
            VT EDS +    + NI GE ++   L V
Sbjct: 66 RDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 8/90 (8%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITP-------YDSGPYLIAWFKDGRQIPGRTSSTSLVI 108
           ++       +V     A+F+  +         +      I             +   LVI
Sbjct: 6   KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI 65

Query: 109 NPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
             V  ED       A    G+     A L 
Sbjct: 66  RDVTGEDSASIMVKAINIAGE-TSSHAFLL 94

>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 11  RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
           R +V GP +  + V  E +  +   S  +       ++  ++ P           V  + 
Sbjct: 16  RIKVFGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIKAHIANPSGASTEC---FVTDNA 72

Query: 71  SANFQCEITPYDSGPYLIAWFKDGRQIPG 99
              +Q E TP++ G +++    D   IP 
Sbjct: 73  DGTYQVEYTPFEKGLHVVEVTYDDVPIPN 101

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 2e-04
 Identities = 21/88 (23%), Positives = 27/88 (30%), Gaps = 4/88 (4%)

Query: 54  PYRVDVNPP-LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR--TSSTSLVINP 110
           P  V V      SV       F C          L+       ++P R    +  L I  
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRN 60

Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQ 138
           V   D G Y C        + QG+A L 
Sbjct: 61  VQPSDAGTYVCTGSNMFA-MDQGTATLH 87

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          IL I  V   D+GTY C+ SN+         L V
Sbjct: 55 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----------STS 105
           +VD+ P    + +  S  F C++        +  +  +G ++               S++
Sbjct: 2   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 61

Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
           L I     +D GIY+C+    DG  ++ +  ++
Sbjct: 62  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK 94

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.1 bits (82), Expect = 2e-04
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 21 IEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
          I G+   D GTYRC    +         +QV 
Sbjct: 60 IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 9/75 (12%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVGR 113
           P          A   C++    S P  I W   GR +  +            L I  + +
Sbjct: 8   PTPQEFKEGEDAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK 65

Query: 114 EDRGIYQCIARRSDG 128
            D G Y+C  R    
Sbjct: 66  TDEGTYRCEGRILAR 80

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 3e-04
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 18/84 (21%)

Query: 64  LSVHLDGSANFQCEITPYDSGPYLIAWFKDGR----------QIPGRTSSTSLVINPVGR 113
            + +       +CE++        + WFK+G           +I        L+I    +
Sbjct: 10  TTAYCGERVELECEVS---EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 66

Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
            D   Y  +         Q SA+L
Sbjct: 67  ADAAEYSVMTTG-----GQSSAKL 85

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.001
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ 50
           IL IEG T  D+  Y   ++     A   V L+
Sbjct: 57 HILIIEGATKADAAEYSVMTTGGQSSAKLSVDLK 90

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.8 bits (81), Expect = 3e-04
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 56  RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------TSLVI 108
            +   P  +    +     +C I   +      +W KDG+    +  +        SLV 
Sbjct: 4   VLKDQPAEVLFRENNPTVLECII-EGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVF 62

Query: 109 NPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
                 D G YQC A    G  +      +
Sbjct: 63  LRPQASDEGHYQCFAETPAGVASSRVISFR 92

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVS 52
          L      A D G Y+C +    G A++  +  + +
Sbjct: 60 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT 94

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 4e-04
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 18  ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD 58
            L ++  T  ++G Y   + N  G+   ++         +D
Sbjct: 63  CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 4e-04
 Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 10/96 (10%)

Query: 49  LQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS--- 105
           L        +V   +L+     S    C     +     + W           S  +   
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPED-NATVHWVLRKPAAGSHPSRWAGMG 59

Query: 106 --LVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
             L++  V   D G Y C           G+  L +
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRAGRPA----GTVHLLV 91

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 4e-04
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 17/86 (19%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT---------SSTSLVINPV 111
            P   V          E+         + W K+G++I             +  +L I+  
Sbjct: 13  EPAYQVSKGHKIRLTVELA---DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQC 69

Query: 112 GREDRGIYQCIARRSDGDVAQGSAEL 137
              D   YQC+         + S EL
Sbjct: 70  SLADDAAYQCVVGG-----EKCSTEL 90

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (80), Expect = 6e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 21  IEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQV 51
            + VTA DSG Y C + N  G A  +    +  
Sbjct: 71  FDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 16/101 (15%), Positives = 23/101 (22%), Gaps = 16/101 (15%)

Query: 54  PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS---------- 103
           P          SV +   A   C             +      +                
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 104 -----TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
                  L+ +PV   D G Y C A+   G  A  S    +
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYG-TAMRSEAAHM 101

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 7e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           + +  +   D GTY+C      G A  ++ L V
Sbjct: 90  INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 14/91 (15%)

Query: 61  PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP-------------GRTSSTSLV 107
               S+        +C +  Y +    + W K                      S   L 
Sbjct: 10  QSEHSILAGDPFELECPVK-YCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILH 68

Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
             PV   D G Y+C A      +   S  L 
Sbjct: 69  FEPVLPNDNGSYRCSANFQSNLIESHSTTLY 99

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 5/43 (11%), Positives = 11/43 (25%)

Query: 17  PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV 59
               +          + C +         E+    S PY++  
Sbjct: 60  VTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQT 102

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 52  STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIP-----GRTSSTS 105
            TP RV++ P      +      +C++        L +   +  +++      G  +  +
Sbjct: 2   WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT 61

Query: 106 LVINPVGREDRGIYQCIAR 124
             +          + C   
Sbjct: 62  TTVLVRRDHHGAQFSCRTE 80

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.001
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
          L I+ +  EDS TY C   +       EV+L V
Sbjct: 69 LIIKNLKIEDSDTYICEVED----QKEEVQLLV 97

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.001
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 11  RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
           R   L   +  + VT ED+GTY C  S  GG +  EV++++
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVR 48
          L I  +T+ D   Y   S NI       + 
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMKFFLY 91

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 0.003
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 69  DGSANFQCEITPYDSGPYLIAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQC 121
           DGS    C     D+    I WFKDG+ I           +    ++ RG+YQC
Sbjct: 17  DGSVLLTC-----DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQC 65

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.1 bits (75), Expect = 0.003
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
          L I+ +T +DSGTY  +  +  G       L + 
Sbjct: 62 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLR 95

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 69  DGSANFQCEITPYDSGPYLIAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQC 121
           DGS    C           I W KDG  I P   +  +  +    ++ RG YQC
Sbjct: 22  DGSVLLTC-----GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQC 70

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.3 bits (75), Expect = 0.003
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEAT--AEVRLQV 51
           + I  +   D+GT+ C   N        ++V L V
Sbjct: 83  IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 69  DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVGREDRGIYQC 121
           +      C        P    W  +G ++     S         ++ NPV  +D G YQC
Sbjct: 22  EEKVTLTCRARANP--PATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79

Query: 122 IARRSDGDVAQGSAELQ 138
           +A  + G V    A L+
Sbjct: 80  VATNARGTVVSREASLR 96

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQVSTPYRVDVNPPLLSVHLD 69
          + ++ GP L   GV A    ++   SS  G       V         V+V         +
Sbjct: 6  KVKIAGPGLG-SGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVD-------N 57

Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
          G        TP   GPY+++      +IP 
Sbjct: 58 GDGTHTVTYTPSQEGPYMVSVKYADEEIPR 87

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.004
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 19  LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVD 58
           L     T  ++G Y   + N  G A   +       P+ VD
Sbjct: 64  LLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVD 104

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (73), Expect = 0.004
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 18  ILAIEGVTAEDSGT-YRCSSSNIGGEATAEVRLQV 51
           +L I  + +      + C + N  G   A ++L  
Sbjct: 71  VLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.68
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.68
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.66
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.65
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.65
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.64
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.64
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.64
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.62
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.6
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.6
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.59
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.58
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.58
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.58
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.57
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.56
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.56
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.56
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.56
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d2avga1	110	Cardiac myosin binding protein C, different domain	99.53
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.52
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.52
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.52
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.51
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.51
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.51
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.49
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.48
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.48
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.48
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.47
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.45
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.44
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.44
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.43
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.43
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.43
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.42
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.42
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.42
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.41
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.4
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.36
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.35
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.32
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.31
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.29
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.27
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.26
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.16
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.15
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.12
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.11
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.02
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.01
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.0
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.91
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.91
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.86
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.85
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.84
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.79
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.77
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.76
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.76
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.75
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.74
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.73
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.73
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.72
d2avga1	110	Cardiac myosin binding protein C, different domain	98.7
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.7
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.68
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.66
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.66
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.66
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.66
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.64
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.62
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.61
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.6
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.59
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.57
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.57
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.56
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.56
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.55
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.54
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.53
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.52
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.5
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.5
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.5
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.49
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.48
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.48
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.46
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.46
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.46
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.45
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.44
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.44
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.41
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.41
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.41
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.41
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.41
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.4
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.38
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.35
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.31
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.3
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.29
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.29
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.29
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.29
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.28
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.28
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.28
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.28
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.28
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.27
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.27
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.26
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.24
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.24
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.23
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.22
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.22
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.22
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.22
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.22
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.22
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.21
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.2
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.19
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.19
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.18
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.18
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.17
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.17
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.16
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.16
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.16
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.13
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.13
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.12
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.12
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.11
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.11
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.11
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.1
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.1
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.07
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.04
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.03
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.03
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.01
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.01
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.01
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.98
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.96
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.95
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.95
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.95
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.93
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.93
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.93
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.93
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.92
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.92
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.92
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.91
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.91
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.9
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.89
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.88
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.88
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.84
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.84
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.84
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.83
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.83
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.81
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.81
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.8
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.79
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.78
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.77
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.75
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.75
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.74
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.74
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.74
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.71
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.7
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.69
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.68
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.68
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.68
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.67
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.64
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.63
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.6
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.6
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.59
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.59
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.57
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.57
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.56
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.54
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.53
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.52
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.52
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.44
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.39
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.39
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.35
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.34
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.33
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.29
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.28
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.27
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.23
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.23
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.22
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.22
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.21
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.16
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.15
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.14
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.12
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.08
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.06
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.05
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.02
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.02
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.98
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.94
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.93
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.92
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.88
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.87
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.86
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.86
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.85
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.85
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.81
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.81
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.8
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.78
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.77
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.77
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.74
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.74
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.73
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.72
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	96.71
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.7
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.7
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.69
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.69
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.69
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.66
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.65
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.64
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.64
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	96.63
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.63
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.63
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.6
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.57
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.57
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.53
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.53
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.51
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.51
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.5
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.49
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.49
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.49
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.47
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.45
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.42
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.41
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.37
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.35
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.33
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.3
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.28
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.28
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.27
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.26
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.24
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.23
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.2
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.19
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.18
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.1
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.07
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.07
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.06
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.06
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.06
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.04
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.02
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.01
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.0
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.0
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.99
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	95.98
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	95.97
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.96
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.95
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.94
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.94
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.92
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	95.9
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	95.9
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	95.9
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	95.89
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.89
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.89
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	95.88
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.88
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	95.87
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.86
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	95.86
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	95.85
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.84
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	95.84
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.83
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.78
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	95.77
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.77
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	95.77
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	95.77
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	95.76
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	95.75
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	95.74
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.72
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	95.71
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	95.69
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.67
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.63
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	95.63
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	95.63
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	95.61
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.6
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.54
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.52
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	95.5
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	95.48
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	95.46
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.45
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.45
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	95.44
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.42
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.4
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	95.4
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.4
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	95.38
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.35
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	95.34
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	95.31
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.28
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.27
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	95.23
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.21
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	95.2
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	95.14
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.13
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.12
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	95.12
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.1
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	95.08
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.04
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	94.99
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	94.94
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	94.93
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	94.92
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.92
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	94.92
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	94.86
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	94.86
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	94.85
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	94.85
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	94.84
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	94.83
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	94.83
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	94.8
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.68
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	94.67
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	94.61
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.57
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	94.56
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.52
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	94.5
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.36
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	94.31
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.3
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	94.24
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	94.21
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	94.2
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	94.18
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	94.17
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	94.13
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	94.11
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	94.11
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	94.09
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	94.06
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.05
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.03
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	94.02
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	93.96
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	93.92
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	93.87
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.86
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	93.85
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	93.84
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	93.78
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.66
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.63
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	93.62
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	93.62
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	93.59
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.58
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.57
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	93.52
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.52
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	93.5
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.5
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	93.41
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.39
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.33
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	93.33
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	93.32
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.32
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.31
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	93.28
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	93.27
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	93.2
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.19
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	93.16
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	93.14
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	93.08
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.0
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	92.97
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	92.95
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	92.94
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	92.93
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	92.92
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	92.92
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	92.91
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	92.78
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	92.77
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	92.64
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	92.39
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	92.36
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.25
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	92.21
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	92.07
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	92.05
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	91.99
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	91.93
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	91.51
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	89.07
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	88.52
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	88.16
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	87.88
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	87.26
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	86.97
d2giya1	177	Alphaherpesvirus glycoprotein E {Human herpesvirus	85.43
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	84.26

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.2e-16  Score=84.91  Aligned_cols=86  Identities=20%  Similarity=0.242  Sum_probs=72.9

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      +...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|..
T Consensus         3 ~~~~p~~~~v~~G~~~~l~C~v~g~p---~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   79 (101)
T d2cqva1           3 IIQFPEDQKVRAGESVELFGKVTGTQ---PITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL   79 (101)
T ss_dssp             ESCCCCSEEEETTCCEEEEEEEESSS---SCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred             EEeeCCcEEEeCCCcEEEEEEEEecC---CCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECC
Confidence            34456677899999999999999 98   899999999988765443        4579999999999999999999999


Q ss_pred             CCceeeeEEEEEcCcCccc
Q psy11131        128 GDVAQGSAELQLGGTRNIK  146 (150)
Q Consensus       128 g~~~~~~~~l~v~~~p~~~  146 (150)
                      | ..+..+.|.|.+.|...
T Consensus        80 G-~~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          80 G-SRQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             C-EEECCEEEEEECSCSCC
T ss_pred             C-EEEEEEEEEEEecCCCc
Confidence            9 68889999998876543

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.68  E-value=4.7e-16  Score=83.10  Aligned_cols=82  Identities=21%  Similarity=0.362  Sum_probs=70.4

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      |.+...+....+..|+.+.|.|.+. .|   .|.+.|++++..+.....    ...|.|.++..+|.|.|.|.+.|..| 
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P---~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKP---RPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG-   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEES---CCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTE-
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEc---CCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCC-
Confidence            4556667778899999999999999 99   999999999988876544    56899999999999999999999999 


Q ss_pred             ceeeeEEEEEc
Q psy11131        130 VAQGSAELQLG  140 (150)
Q Consensus       130 ~~~~~~~l~v~  140 (150)
                      ....++.|.|+
T Consensus        78 ~~~~~~~l~V~   88 (89)
T d1cs6a4          78 TVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            57777888775

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=3.9e-16  Score=84.79  Aligned_cols=86  Identities=29%  Similarity=0.417  Sum_probs=71.6

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      |.+...+....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....        ...|.|.++...|.|.|.|.+.|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P---~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   78 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASS---PPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN   78 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSS---CCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcC---CCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEE
Confidence            4556667777889999999999999 99   999999999987755432        45799999999999999999999


Q ss_pred             CCCCceeeeEEEEEcCcCc
Q psy11131        126 SDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       126 ~~g~~~~~~~~l~v~~~p~  144 (150)
                      ..| ..+..+.|.|...++
T Consensus        79 ~~G-~~~~~~~l~V~~~~~   96 (97)
T d1koaa1          79 SYG-TKEEIVFLNVTRHSE   96 (97)
T ss_dssp             TTE-EEEEEECCEEECSCC
T ss_pred             CCC-EEEEEEEEEEeecCC
Confidence            999 577788888876543

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.66  E-value=3e-16  Score=83.65  Aligned_cols=78  Identities=13%  Similarity=0.227  Sum_probs=64.5

Q ss_pred             CcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ....+.+|+.+.|.|.+.  .|   .+.+.|++++..+........|.|..+..+|+|.|.|.+.|..|...+..+.|.|
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p---~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V   84 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKP---LVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITV   84 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCC---CEEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCeEecCCeEEEEEEecCCCC---CcEEEEEeecccccccccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEE
Confidence            334578999999999997  46   7899999999876544346789999999999999999999998854567889998


Q ss_pred             cCc
Q psy11131        140 GGT  142 (150)
Q Consensus       140 ~~~  142 (150)
                      ++|
T Consensus        85 ~~P   87 (88)
T d2fcba2          85 QAP   87 (88)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            775

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=1.2e-15  Score=81.84  Aligned_cols=82  Identities=18%  Similarity=0.175  Sum_probs=66.3

Q ss_pred             ceEEe-CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--eeeEEEccCCCCCCceEEEEEEeCCCCc
Q psy11131         55 YRVDV-NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--STSLVINPVGREDRGIYQCIARRSDGDV  130 (150)
Q Consensus        55 ~~~~~-~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--~~~l~~~~~~~~~~g~y~C~~~~~~g~~  130 (150)
                      |.+.. .+....+.+|+.+.|.|.+. .|   .|.+.|++++........  ...|.|.++..+|.|.|.|.+.|..| .
T Consensus         5 P~i~~~~p~~~~~~~G~~v~l~C~~~g~P---~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~   80 (91)
T d1cs6a3           5 PSIKAKFPADTYALTGQMVTLECFAFGNP---VPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG-R   80 (91)
T ss_dssp             EEEEECCCSEEEEETTCCEEEECEEEEES---CCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTE-E
T ss_pred             CeEEeeCCCcEEEecCCcEEEEEEEEEcc---CCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCC-E
Confidence            44443 46677889999999999999 99   999999987654432221  57899999999999999999999999 5


Q ss_pred             eeeeEEEEEc
Q psy11131        131 AQGSAELQLG  140 (150)
Q Consensus       131 ~~~~~~l~v~  140 (150)
                      ....+.|.|+
T Consensus        81 ~~~~~~l~V~   90 (91)
T d1cs6a3          81 DTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7777888775

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.65  E-value=2.3e-15  Score=82.40  Aligned_cols=84  Identities=26%  Similarity=0.326  Sum_probs=70.9

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....         ...|.|.++...|.|.|.|.+
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P---~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYP---DPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA   84 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEecc---CCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEE
Confidence            35555667778899999999999999 99   999999999988765543         457999999999999999999


Q ss_pred             EeCCCCceeeeEEEEEcC
Q psy11131        124 RRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v~~  141 (150)
                      .|..| ..+.++.|.|..
T Consensus        85 ~N~~G-~~~~~~~L~V~s  101 (102)
T d1fhga_          85 VNSLG-EATCTAELLVET  101 (102)
T ss_dssp             EETTE-EEEEEEEEEEEC
T ss_pred             EECCc-EEEEEEEEEEEE
Confidence            99999 677888887753

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.4e-15  Score=79.57  Aligned_cols=82  Identities=23%  Similarity=0.412  Sum_probs=66.9

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      |.+...|....+.+|+.+.|.|.+. .|   .| .+.|++++..+.... ...+.+.....+|.|.|.|.|.|..|...+
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P---~P~~i~W~k~g~~i~~~~-~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S   77 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPP---EPVTIVWWRGTTKIGGPA-PSPSVLNVTGVTQSTMFSCEAHNLKGLASS   77 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSS---SCCEEEEEETTEECSCSE-ESSEEEEECCCSSCEEEEEEEEETTEEEEC
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCC---cceEEEEEECCEECCCCC-CcceEEecCCccccEEEEEEEEcCCCcEEE
Confidence            4556677788899999999999999 88   77 999999998876554 345666777778999999999999996566


Q ss_pred             eeEEEEEc
Q psy11131        133 GSAELQLG  140 (150)
Q Consensus       133 ~~~~l~v~  140 (150)
                      +++.|.|+
T Consensus        78 ~~~~v~Vk   85 (85)
T d1rhfa2          78 RTATVHLQ   85 (85)
T ss_dssp             CCEEEEEC
T ss_pred             EEEEEEEC
Confidence            77888764

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=1.6e-15  Score=81.74  Aligned_cols=82  Identities=12%  Similarity=0.152  Sum_probs=68.9

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      |.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|
T Consensus         3 P~i~~~~~~~~v~~G~~~~l~c~~~g~P---~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   79 (93)
T d1wiua_           3 PKILTASRKIKIKAGFTHNLEVDFIGAP---DPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CEECCCCCEEEECSSBCCEEEEEEECCS---SCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CeEEeCCCcEEEeCCCeEEEEEEEEEec---CCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEE
Confidence            4455556678899999999999999 99   999999999887765443        46899999999999999999999


Q ss_pred             CCCCceeeeEEEEEc
Q psy11131        126 SDGDVAQGSAELQLG  140 (150)
Q Consensus       126 ~~g~~~~~~~~l~v~  140 (150)
                      ..| ..+..+.|.|+
T Consensus        80 ~~G-~~~~~~~l~V~   93 (93)
T d1wiua_          80 ELG-EDEAIFEVIVQ   93 (93)
T ss_dssp             TTE-EEEEEEEEEEC
T ss_pred             CCC-EEEEEEEEEEC
Confidence            999 67777887763

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.64  E-value=2.8e-15  Score=81.47  Aligned_cols=84  Identities=20%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....         ...|.|.++...|.|.|.|.+
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P---~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   80 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKP---DPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA   80 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEec---CCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEE
Confidence            34556666778899999999999999 99   999999999988765443         347999999999999999999


Q ss_pred             EeCCCCceeeeEEEEEcC
Q psy11131        124 RRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~v~~  141 (150)
                      .|..| ..+..+.|.|..
T Consensus        81 ~N~~G-~~~~~~~L~V~~   97 (98)
T d1g1ca_          81 INIAG-ETSSHAFLLVQA   97 (98)
T ss_dssp             EETTE-EEEEEEEEEEEC
T ss_pred             EECCc-EEEEEEEEEEEE
Confidence            99999 577778888754

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-15  Score=81.71  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=66.8

Q ss_pred             CcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ....+.+|+.+.|.|.+.  .+   ...+.|++++..+........|.|..+..+|+|.|.|.+.|..+...+..+.|.|
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~---~~~~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V   84 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWD---VYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV   84 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCC---EEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CcCeEeCCCEEEEEEEecCCCC---CeEEEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEE
Confidence            334578999999999997  45   7799999999887655446789999999999999999999988755678899999


Q ss_pred             cCcC
Q psy11131        140 GGTR  143 (150)
Q Consensus       140 ~~~p  143 (150)
                      ..+|
T Consensus        85 ~~~P   88 (89)
T d1f2qa2          85 IKAP   88 (89)
T ss_dssp             ECSC
T ss_pred             EeCC
Confidence            8887

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=1.9e-15  Score=80.74  Aligned_cols=81  Identities=21%  Similarity=0.411  Sum_probs=66.3

Q ss_pred             ceEEeCCC-cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         55 YRVDVNPP-LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        55 ~~~~~~~~-~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      |.+...+. ...+.+|+.+.|.|.+. .|   .|.+.|++++..+.....   ...|.|.++...|.|.|.|.+.|..| 
T Consensus         3 P~f~~~p~~~~~v~~G~~~~l~C~~~g~P---~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-   78 (89)
T d1biha4           3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLP---APNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHG-   78 (89)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEES---CCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTE-
T ss_pred             CeEEECCCCCEEEeCCCeEEEEEEEEEeC---CCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCC-
Confidence            44554444 45678999999999999 99   899999999988865432   45799999999999999999999999 


Q ss_pred             ceeeeEEEEE
Q psy11131        130 VAQGSAELQL  139 (150)
Q Consensus       130 ~~~~~~~l~v  139 (150)
                      .....+.|.|
T Consensus        79 ~~~~~~~l~V   88 (89)
T d1biha4          79 DKYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            5677777776

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.62  E-value=1.3e-15  Score=81.36  Aligned_cols=77  Identities=12%  Similarity=0.239  Sum_probs=62.8

Q ss_pred             CcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ....+.+|+.+.|.|.+.  .|   .+.+.|++++..+........+.|.++..+|+|.|.|.+.|..|...+..+.|.|
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p---~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV   86 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTA---LHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI   86 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCC---CEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCeEccCCeEEEEEEecCCCC---CcEEEEEEcccccceeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEE
Confidence            334578999999999987  45   6799999999876544335689999999999999999999988855567788888


Q ss_pred             cC
Q psy11131        140 GG  141 (150)
Q Consensus       140 ~~  141 (150)
                      ..
T Consensus        87 ~E   88 (89)
T d1fnla2          87 TQ   88 (89)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-14  Score=77.51  Aligned_cols=76  Identities=16%  Similarity=0.291  Sum_probs=62.2

Q ss_pred             CCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         60 NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      .+....+.+|+++.|.|.+.  .|   .+.+.|.+.+..+.....   .+.|.|.++..+|+|.|.|.+.|..| ..+.+
T Consensus         9 p~~~~~~~~G~~~~l~C~~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g-~~~~s   84 (90)
T d1gsma1           9 PEPVVAVALGASRQLTCRLACADR---GASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR-TFQHT   84 (90)
T ss_dssp             CCSEEEEETTCCEEEEEEECCSST---TCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTE-EEEEE
T ss_pred             CCCeEEEEeCCcEEEEEEecCCCC---ccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCC-cEEEE
Confidence            33456788999999999885  77   889999987766532221   67899999999999999999999988 68888


Q ss_pred             EEEEE
Q psy11131        135 AELQL  139 (150)
Q Consensus       135 ~~l~v  139 (150)
                      +.|.|
T Consensus        85 ~~l~V   89 (90)
T d1gsma1          85 VQLLV   89 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88876

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.4e-15  Score=80.06  Aligned_cols=77  Identities=22%  Similarity=0.335  Sum_probs=64.7

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      |....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....          ...|.|.++..+|.|.|.|.+.|..|.
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   79 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGME---EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGET   79 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCS---SCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             CeeEEEcCCCeEEEEEEEEecC---CceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCC
Confidence            4556788999999999999 99   999999999987754432          357899999999999999999999995


Q ss_pred             ceeeeEEEEEc
Q psy11131        130 VAQGSAELQLG  140 (150)
Q Consensus       130 ~~~~~~~l~v~  140 (150)
                      ..+..+.|.|.
T Consensus        80 ~~S~~~~l~V~   90 (91)
T d1rhfa1          80 EISQPVWLTVE   90 (91)
T ss_dssp             EECCCEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            45678888875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.3e-14  Score=76.44  Aligned_cols=77  Identities=22%  Similarity=0.338  Sum_probs=64.1

Q ss_pred             CCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         60 NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      .+....+.+|+.+.|.|.+.  .|   .+.+.|++++..+.....   ...|.|.++...|.|.|.|.+.|..| ..+..
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~   83 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSP---AYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA-MDQGT   83 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSS---CCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSC-EEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCC---CCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCC-EEEEE
Confidence            35567788999999999997  67   789999998877654433   56899999999999999999999999 67777


Q ss_pred             EEEEEc
Q psy11131        135 AELQLG  140 (150)
Q Consensus       135 ~~l~v~  140 (150)
                      +.|.|+
T Consensus        84 ~~l~V~   89 (89)
T d1gl4b_          84 ATLHVQ   89 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            887763

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.5e-15  Score=78.81  Aligned_cols=74  Identities=8%  Similarity=0.056  Sum_probs=63.0

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      ..+.+|+.+.|.|.+. .|   .|.+.|.+++..+...  ...|.|.++..+|+|.|.|.|.|..| .....+.+.|.+.
T Consensus         9 ~~v~~G~~~~L~C~~~g~p---~P~i~W~~~~~~~~~~--~~~l~i~~v~~~DsG~Y~C~a~N~~g-~~~~~~~v~V~~~   82 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGS---SPSVQCRSPRGKNIQG--GKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAF   82 (84)
T ss_dssp             SCEETTCCEEEEEECCTTC---CCEEEEECTTCCEEEE--SSEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEECEECC
T ss_pred             eEEECCCeEEEEEEeEcCC---chheEEEeecccceee--eeeeeeeecccccccEEEEEEEeCCC-EEEEEEEEEEEec
Confidence            3578999999999999 99   9999999876654332  45799999999999999999999998 6788888888776


Q ss_pred             C
Q psy11131        143 R  143 (150)
Q Consensus       143 p  143 (150)
                      |
T Consensus        83 ~   83 (84)
T d2nxyb2          83 Q   83 (84)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.7e-14  Score=78.56  Aligned_cols=84  Identities=26%  Similarity=0.460  Sum_probs=65.2

Q ss_pred             CceEEeCCCcE--EEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEE
Q psy11131         54 PYRVDVNPPLL--SVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        54 ~~~~~~~~~~~--~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~  120 (150)
                      ||.+...+...  .+..|+.+.|.|.+. .|   .|.+.|++++..+.....          ...|.|.++..+|.|.|.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P---~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   79 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFP---EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV   79 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEES---CCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEec---CCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEE
Confidence            34444434333  345799999999999 99   999999999887653321          467999999999999999


Q ss_pred             EEEEeCCCCceeeeEEEEEcC
Q psy11131        121 CIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       121 C~~~~~~g~~~~~~~~l~v~~  141 (150)
                      |.+.|..| ..+..+.|.|.+
T Consensus        80 C~a~N~~G-~~~~~~~l~V~~   99 (100)
T d1qz1a3          80 CIAENKAG-EQDASIHLKVFA   99 (100)
T ss_dssp             EEEEETTE-EEEEEEEEEEEC
T ss_pred             EEEEECCC-EEEEEEEEEEEE
Confidence            99999999 577788887754

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.58  E-value=2e-15  Score=81.02  Aligned_cols=77  Identities=21%  Similarity=0.443  Sum_probs=65.6

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCc
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDV  130 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~  130 (150)
                      .|....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|..| .
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P---~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~   80 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEP---VPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG-K   80 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSS---CCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSC-B
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEe---CCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCC-E
Confidence            45667889999999999999 99   899999999887765433        57899999999999999999999999 5


Q ss_pred             eeeeEEEEEc
Q psy11131        131 AQGSAELQLG  140 (150)
Q Consensus       131 ~~~~~~l~v~  140 (150)
                      .+..+.|.|+
T Consensus        81 ~~~~~~l~V~   90 (91)
T d1tnna_          81 QEAEFTLTIQ   90 (91)
T ss_dssp             CCEEEEEECC
T ss_pred             EEEEEEEEEE
Confidence            6777777764

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.4e-14  Score=75.47  Aligned_cols=74  Identities=15%  Similarity=0.250  Sum_probs=61.8

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEE
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAE  136 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~  136 (150)
                      ...+..|+.+.|.|.+. .|   .|.+.|.+++..+.....     ...|.|.++..+|.|.|.|.|.|..| ..+.++.
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p---~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g-~~~~~~~   85 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCE---SPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR-KLEKGIQ   85 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCS---SCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTE-EEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCC---CceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCC-EEEEEEE
Confidence            34567899999999999 99   999999987665433222     57899999999999999999999999 6888888


Q ss_pred             EEEc
Q psy11131        137 LQLG  140 (150)
Q Consensus       137 l~v~  140 (150)
                      |.|.
T Consensus        86 v~V~   89 (90)
T d1vcaa2          86 VEIY   89 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8774

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.56  E-value=1.5e-14  Score=78.39  Aligned_cols=73  Identities=22%  Similarity=0.451  Sum_probs=62.2

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      ...+..|+.+.|.|.+. .|   .|.+.|++++..+.....         ...|.|.++..+|.|.|.|.+.|..| ..+
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P---~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~   89 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNP---MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SIN   89 (97)
T ss_dssp             EEEECTTCCEEEECCEEEES---CCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE-EEE
T ss_pred             cEEECCCCcEEEEEEEeEEC---CCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCC-EEE
Confidence            35678899999999999 99   999999999987754322         46899999999999999999999999 577


Q ss_pred             eeEEEEE
Q psy11131        133 GSAELQL  139 (150)
Q Consensus       133 ~~~~l~v  139 (150)
                      .++.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888876

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.4e-14  Score=78.39  Aligned_cols=78  Identities=22%  Similarity=0.272  Sum_probs=65.3

Q ss_pred             cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEE
Q psy11131         63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAE  136 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~  136 (150)
                      ...+.+|+.+.|.|.+..+   .+.+.|++++..+.....      ...|.|.++..+|.|.|.|.|.|..|...+..+.
T Consensus        12 ~~~v~~g~~v~l~C~~~~~---~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~   88 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSNDI---GANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIK   88 (96)
T ss_dssp             CSEECTTSCEEEEECCCCS---SCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCE
T ss_pred             ceEEeCCCeEEEEEccCCC---CCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEE
Confidence            3467899999999987665   678999999988765543      4689999999999999999999999865567889


Q ss_pred             EEEcCcC
Q psy11131        137 LQLGGTR  143 (150)
Q Consensus       137 l~v~~~p  143 (150)
                      |.|..+|
T Consensus        89 L~V~~~P   95 (96)
T d1l6za2          89 LDIIFDP   95 (96)
T ss_dssp             EEECCSC
T ss_pred             EEEEcCC
Confidence            9998877

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.56  E-value=3e-14  Score=77.14  Aligned_cols=76  Identities=18%  Similarity=0.320  Sum_probs=62.5

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      +....+.+|+.+.|.|.+. .|   .+.+.|++++..+.....          ...|.|.++..+|.|.|.|.+.|..|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P---~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNP---MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSS---CCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CCCEEEecCCeEEEEEEEEEec---CCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCc
Confidence            4567788999999999999 89   899999999887653321          457999999999999999999999995


Q ss_pred             ceeeeEEEEE
Q psy11131        130 VAQGSAELQL  139 (150)
Q Consensus       130 ~~~~~~~l~v  139 (150)
                      ..+.++.|.|
T Consensus        87 ~~s~s~~L~V   96 (97)
T d1biha3          87 PQKHSLKLTV   96 (97)
T ss_dssp             CEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            4455677765

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.56  E-value=2.2e-14  Score=77.30  Aligned_cols=81  Identities=21%  Similarity=0.304  Sum_probs=64.7

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      |.+...|....+.+|+.+.|.|.+. .|   .+ .+.|++++..+.....       ...|.|.++..+|.|.|.|.+.|
T Consensus         3 P~i~~~p~~~~v~~g~~~~l~C~~~g~p---~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           3 PVLKDQPAEVLFRENNPTVLECIIEGND---QGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCC---SSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEecCCcEEEeCCCeEEEEEEecCCC---CeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEe
Confidence            4555667778899999999999998 77   55 7999999887754432       46899999999999999999999


Q ss_pred             CCCCceeeeEEEE
Q psy11131        126 SDGDVAQGSAELQ  138 (150)
Q Consensus       126 ~~g~~~~~~~~l~  138 (150)
                      ..|...+..+.|+
T Consensus        80 ~~G~~~s~~v~l~   92 (94)
T d1biha1          80 PAGVASSRVISFR   92 (94)
T ss_dssp             TTEEEECCCEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9995445555554

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.6e-13  Score=74.26  Aligned_cols=80  Identities=23%  Similarity=0.505  Sum_probs=60.9

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec-CcccCCCc-c---------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD-GRQIPGRT-S---------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~-~~~~~~~~-~---------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      ..|....+.+|+.+.|.|.+. .|.  .+.+.|+++ +..+.... .         ...|.|.++..+|.|.|.|.+.|.
T Consensus         5 i~P~~~~v~~G~~~~l~C~v~g~p~--~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           5 IVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSC--CCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EECCCEEEccCCcEEEEEEEEeccC--CCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            345667889999999999998 661  479999984 44333221 1         467999999999999999999999


Q ss_pred             CCCceeeeEEEEEc
Q psy11131        127 DGDVAQGSAELQLG  140 (150)
Q Consensus       127 ~g~~~~~~~~l~v~  140 (150)
                      .|...+.++.|.|.
T Consensus        83 ~G~~~~~tv~l~V~   96 (97)
T d1epfa1          83 DGTQSEATVNVKIF   96 (97)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            98545567777764

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3e-13  Score=74.80  Aligned_cols=85  Identities=19%  Similarity=0.228  Sum_probs=65.7

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----------------eeeEEEccCCCCCCce
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----------------STSLVINPVGREDRGI  118 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~g~  118 (150)
                      +...|....+..|+.+.|.|.+. .|....|.+.|++++........                 ...|.|.++...|.|.
T Consensus         7 Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   86 (110)
T d2avga1           7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGG   86 (110)
T ss_dssp             EEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEE
T ss_pred             eEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcE
Confidence            45567778899999999999998 66222478999987643211110                 3579999999999999


Q ss_pred             EEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        119 YQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       119 y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      |.|.+.|..| ..+..+.|.|.++
T Consensus        87 Y~C~a~N~~G-~~~~~~~L~V~~~  109 (110)
T d2avga1          87 YRCEVSTKDK-FDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEETTE-EEEEEEEEEEESC
T ss_pred             EEEEEEECCC-eEEEEEEEEEEec
Confidence            9999999999 6888888888753

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=4.3e-14  Score=75.80  Aligned_cols=80  Identities=20%  Similarity=0.357  Sum_probs=63.2

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      .+...|....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....       ...|.|.++...|.|.|.|.+.|..
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g~p---~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~   79 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVSSL---PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA   79 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEECSS---CCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGG
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEeecC---CCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECc
Confidence            445567778899999999999999 99   999999999876643322       4579999999999999999999976


Q ss_pred             CCceeeeEEEEE
Q psy11131        128 GDVAQGSAELQL  139 (150)
Q Consensus       128 g~~~~~~~~l~v  139 (150)
                      + .......+.|
T Consensus        80 ~-~~~~~~~i~V   90 (92)
T d1epfa2          80 R-GEINFKDIQV   90 (92)
T ss_dssp             G-TEEEEEEEEE
T ss_pred             C-CEEEEEEEEE
Confidence            6 2444444444

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-13  Score=74.65  Aligned_cols=83  Identities=23%  Similarity=0.339  Sum_probs=63.7

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeecCcccC----CCc--c--------eeeEEEccCC-CCCC
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKDGRQIP----GRT--S--------STSLVINPVG-REDR  116 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~~~~~~----~~~--~--------~~~l~~~~~~-~~~~  116 (150)
                      ||.+...+....+.+|+.+.|.|.+. .|   .+ .+.|++++....    ...  .        ...|.|.++. ..|.
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P---~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~   78 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVP---PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP   78 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSS---CCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecC---CeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCC
Confidence            56666677778899999999999999 77   66 799998653221    110  0        4578999987 4789


Q ss_pred             ceEEEEEEeCCCCceeeeEEEEEc
Q psy11131        117 GIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus       117 g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      |.|.|.|.|..| ..+..+.|.|.
T Consensus        79 G~Y~C~A~N~~G-~~~~~~~L~Vr  101 (101)
T d3b5ha1          79 GQYRCNGTSSKG-SDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEEETTE-EEEEEEEEEEC
T ss_pred             EEEEEEEEECCC-EEEEEEEEEEC
Confidence            999999999999 57777887763

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.52  E-value=1.3e-13  Score=76.10  Aligned_cols=81  Identities=27%  Similarity=0.354  Sum_probs=62.0

Q ss_pred             ceEEeC-CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCC----Ccc-----------------eeeEEEccC
Q psy11131         55 YRVDVN-PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG----RTS-----------------STSLVINPV  111 (150)
Q Consensus        55 ~~~~~~-~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~----~~~-----------------~~~l~~~~~  111 (150)
                      |.+... |....+.+|+++.|.|.+. .|   .|.+.|++++.....    ...                 ...|.|.++
T Consensus         5 P~i~~~~P~~~tv~~G~~v~l~C~v~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   81 (109)
T d2fdbp2           5 PILQAGLPANASTVVGGDVEFVCKVYSDA---QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV   81 (109)
T ss_dssp             CEECTTCSCCEEECTTCCEEEEEEEECSS---CCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred             CEEcCCCCCCEEEecCCcEEEEEEEEEcC---CCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence            444332 5678899999999999999 99   999999986532110    000                 367999999


Q ss_pred             CCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131        112 GREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      ..+|.|.|.|.|.|..| .....+.|.|
T Consensus        82 ~~~D~G~Y~C~a~N~~G-~~~~~~~L~V  108 (109)
T d2fdbp2          82 TFEDAGEYTCLAGNSIG-ISFHSAWLTV  108 (109)
T ss_dssp             CGGGCEEEEEEEECSSC-EEEEEEEEEE
T ss_pred             CHHHCeEEEEEEEECCC-EEEEEEEEEE
Confidence            99999999999999999 5777888876

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.9e-14  Score=79.49  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------------------------------------
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------------------------------------  102 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------------------------------------  102 (150)
                      .+..+.+.+|+.+.|.|.+. .|   .|.+.|++++..+.....                                    
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P---~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   91 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDP---APTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK   91 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBS---CCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET
T ss_pred             CCCCEEEEcCCeEEEEEEEEEec---CCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC
Confidence            34567888999999999999 99   999999987654321110                                    


Q ss_pred             -eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131        103 -STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  141 (150)
Q Consensus       103 -~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~  141 (150)
                       ...|.|.++..+|+|.|.|.|.|..| .....+.|.|.+
T Consensus        92 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V~d  130 (130)
T d1gxea_          92 DRSIFTVEGAEKEDEGVYTVTVKNPVG-EDQVNLTVKVID  130 (130)
T ss_dssp             TEEEEECSCCCTTTCEEEEEEEECSSC-EEEEEEEEEECC
T ss_pred             CEEEEEECcCChhcCEEEEEEEEECCC-EEEEEEEEEEEC
Confidence             35699999999999999999999999 678888888764

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.9e-14  Score=77.33  Aligned_cols=85  Identities=16%  Similarity=0.174  Sum_probs=65.3

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC---CCcc--------------eeeEEEccCCCCCCceEE
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP---GRTS--------------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~---~~~~--------------~~~l~~~~~~~~~~g~y~  120 (150)
                      ..|....+.+|+.+.|.|.+. .|....|.+.|++++....   ....              ...|.|.++...|.|.|.
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            356677899999999999998 7622247999998753211   0000              356999999999999999


Q ss_pred             EEEEeCCCCceeeeEEEEEcCcCc
Q psy11131        121 CIARRSDGDVAQGSAELQLGGTRN  144 (150)
Q Consensus       121 C~~~~~~g~~~~~~~~l~v~~~p~  144 (150)
                      |.|.|..| ..+..+.|.|..+++
T Consensus        85 C~a~N~~G-~~~~~~~L~V~~~~~  107 (113)
T d2dava1          85 CEVTYKDK-FDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEECSSC-EEEECCEEEEECCCC
T ss_pred             EEEEeCCC-EEEEEEEEEEEcCCC
Confidence            99999999 678888999876654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.7e-14  Score=76.59  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=60.2

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSA  135 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~  135 (150)
                      +....+.|.+. .|   .|.+.|++++..+.....            ...|.|.++..+|.|.|.|.|.|..| ..+.++
T Consensus        17 ~~~~~i~~~v~G~P---~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-~~~~~~   92 (105)
T d1wwca_          17 RLEHCIEFVVRGNP---PPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG-TANQTI   92 (105)
T ss_dssp             CCEEEEEEEEECSS---CCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTE-EEEEEE
T ss_pred             EEEEEEEEEEEEeC---CCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCC-EEEEEE
Confidence            34456788888 99   999999999987765432            35699999999999999999999999 688889


Q ss_pred             EEEEcCcCcc
Q psy11131        136 ELQLGGTRNI  145 (150)
Q Consensus       136 ~l~v~~~p~~  145 (150)
                      .+.|.++|..
T Consensus        93 ~v~V~~~P~P  102 (105)
T d1wwca_          93 NGHFLKEPFP  102 (105)
T ss_dssp             EECCSCCCCC
T ss_pred             EEEEEeCCCC
Confidence            9998877644

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1e-13  Score=75.95  Aligned_cols=80  Identities=18%  Similarity=0.222  Sum_probs=60.9

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc--c-----------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S-----------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~-----------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      .+....+..|+++.|.|.+. .|.  .|.+.|++++..+....  .           ...|.|.++..+|.|.|.|.|.|
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~--~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   86 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCAN--RPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANF   86 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSS--CCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCC--CCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEc
Confidence            44556788999999999999 661  38999999876542111  0           23599999999999999999999


Q ss_pred             CCCCceeeeEEEEEcC
Q psy11131        126 SDGDVAQGSAELQLGG  141 (150)
Q Consensus       126 ~~g~~~~~~~~l~v~~  141 (150)
                      ..|...+..+.|.|.+
T Consensus        87 ~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          87 QSNLIESHSTTLYVTD  102 (104)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCeEEEEEEEEEEEE
Confidence            9984345677777754

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=5.6e-14  Score=76.08  Aligned_cols=81  Identities=22%  Similarity=0.395  Sum_probs=62.0

Q ss_pred             ceEEeCCCcEEEecC---CcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEE
Q psy11131         55 YRVDVNPPLLSVHLD---GSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g---~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      |.+...|....+.+|   +.+.|.|.+. .|   .|.+.|++++..+.....       ...+.+..+..+|.|.|.|.|
T Consensus         5 P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P---~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANP---PATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEECCCCEEEETTCSCCEEEECCEEEEES---CCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEE
T ss_pred             CEEEEeCCCEEEECccCCCeEEEEEEEEEeC---CCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEE
Confidence            455556666665555   6899999999 99   999999999987754432       456777778889999999999


Q ss_pred             EeCCCCceeeeEEEE
Q psy11131        124 RRSDGDVAQGSAELQ  138 (150)
Q Consensus       124 ~~~~g~~~~~~~~l~  138 (150)
                      .|..|...+..+.|+
T Consensus        82 ~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          82 TNARGTVVSREASLR   96 (97)
T ss_dssp             EETTEEEECCCEEEE
T ss_pred             EECCCEEEEEEEEEe
Confidence            999995445566664

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-13  Score=74.75  Aligned_cols=74  Identities=16%  Similarity=0.210  Sum_probs=63.0

Q ss_pred             cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131         68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDGDVAQG  133 (150)
Q Consensus        68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~  133 (150)
                      .++...+.|.+. .|   .|.+.|++++..+.....             ...|.|..+..+|.|.|.|.|.|..| ..+.
T Consensus        15 ~~~~~~i~~~v~G~P---~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-~~~~   90 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNP---KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG-KDEK   90 (103)
T ss_dssp             CCCEEEEEEEEECSS---CCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSC-EEEE
T ss_pred             cceeEEEEEEEEEeC---CCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCC-EEEE
Confidence            566678999999 99   999999999988765432             34799999999999999999999999 6889


Q ss_pred             eEEEEEcCcCcc
Q psy11131        134 SAELQLGGTRNI  145 (150)
Q Consensus       134 ~~~l~v~~~p~~  145 (150)
                      .+.|.|.+.|.+
T Consensus        91 ~~~v~V~~~P~i  102 (103)
T d1wwbx_          91 QISAHFMGWPGI  102 (103)
T ss_dssp             EEEECCSCCCCC
T ss_pred             EEEEEEEeCCCC
Confidence            999999888754

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1e-14  Score=78.29  Aligned_cols=81  Identities=17%  Similarity=0.227  Sum_probs=64.0

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCc-eEEEEEEeC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRG-IYQCIARRS  126 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g-~y~C~~~~~  126 (150)
                      |.+...+....+.+|+.+.|.|.+. .|   .|.+.|++++..+.....      ...|.|.++..+|.| .|.|.+.|.
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~~~g~P---~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           3 PTLKVQVPNASVDVGDDVLLRCQVEGRG---LEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CEEEEECCSSCCBTTCCEEEEEEEECSS---CCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CEEEEeCCCEEEeCCCEEEEeeeccCCC---CcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcC
Confidence            4555555666788999999999999 99   899999998866543221      568999999999999 699999999


Q ss_pred             CCCceeeeEEEEE
Q psy11131        127 DGDVAQGSAELQL  139 (150)
Q Consensus       127 ~g~~~~~~~~l~v  139 (150)
                      .| ....++.|.|
T Consensus        80 ~G-~~~~s~~l~V   91 (92)
T d2ifga1          80 VG-RAEVSVQVNV   91 (92)
T ss_dssp             TE-ECCEEECCCC
T ss_pred             CC-EEEEEEEEEE
Confidence            99 4666665544

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-14  Score=75.82  Aligned_cols=73  Identities=18%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v  139 (150)
                      +....+.+|+.+.|.|.+. .|   .|.+.|++++..+....     .+..+..+|+|.|.|.|.|..| ..+..+.|.|
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P---~P~v~W~k~g~~~~~~~-----~~~~v~~~d~G~Y~C~A~N~~G-~~~~~~~l~V   81 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNP---LPELKCLKDGTFPLPIG-----ESVTVTRDLEGTYLCRARSTQG-EVTREVTVNV   81 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEES---CCEEEEEETTTEECCTT-----SCEECCGGGCEEEEEEEEETTE-EEEEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcC---ccEEEEEEeeccceeee-----eeeccccCCCCEEEEEEEcCCC-EEEEEEEEEE
Confidence            4567788999999999999 99   99999999887654332     2446778999999999999999 6788888888


Q ss_pred             cCc
Q psy11131        140 GGT  142 (150)
Q Consensus       140 ~~~  142 (150)
                      ..|
T Consensus        82 ~~P   84 (84)
T d2oz4a3          82 LSP   84 (84)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            654

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.8e-13  Score=75.36  Aligned_cols=72  Identities=14%  Similarity=0.116  Sum_probs=59.1

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      ++...+.|.+. .|   .|.+.|++++..+.....               ...|.|.++..+|.|.|.|.+.|..| ...
T Consensus        15 ~~~~ci~~~v~G~P---~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G-~~~   90 (107)
T d1he7a_          15 MHHWCIPFSVDGQP---APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG-QAS   90 (107)
T ss_dssp             CCEEEEEEEECCSS---CCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE-EEE
T ss_pred             EEEEEEEEEEEEec---CCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC-EEE
Confidence            34445667888 99   999999999988764432               35699999999999999999999999 688


Q ss_pred             eeEEEEEcCcCc
Q psy11131        133 GSAELQLGGTRN  144 (150)
Q Consensus       133 ~~~~l~v~~~p~  144 (150)
                      ..+.+.|.++|.
T Consensus        91 ~~i~v~v~~~P~  102 (107)
T d1he7a_          91 ASIMAAFMDNPF  102 (107)
T ss_dssp             EEEEECCCSCTT
T ss_pred             EEEEEEEEcCCC
Confidence            889999988874

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.9e-13  Score=72.39  Aligned_cols=81  Identities=21%  Similarity=0.311  Sum_probs=65.1

Q ss_pred             CCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      .+......+|+.+.|.|.+.  .|   .+.+.|++++..+.....        ...|.|.++..+|.|.|.|.+.|..| 
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g-   83 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEH---KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY-   83 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGC---SSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTE-
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCC---CceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCC-
Confidence            34556678899999999886  67   899999998765432211        46899999999999999999999999 


Q ss_pred             ceeeeEEEEEcCcCc
Q psy11131        130 VAQGSAELQLGGTRN  144 (150)
Q Consensus       130 ~~~~~~~l~v~~~p~  144 (150)
                      .....+.|.|....|
T Consensus        84 ~~~~~~~L~V~~~~p   98 (101)
T d1iray1          84 CLRIKISAKFVENEP   98 (101)
T ss_dssp             EEEEEEEEEEECCCT
T ss_pred             eEEEEEEEEEEeCCC
Confidence            677888998876544

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.5e-13  Score=73.58  Aligned_cols=90  Identities=7%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec--CCCCCCc--EEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEE
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPY--LIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~--~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      |+.+.+.+....+.+|+.+.|.|.+.  .|   .+  .+.|++++..+.....     .+.|.|.....+|.|.|+|.|.
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P---~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~   80 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAP---RAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTE   80 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBC---GGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCC---CCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEE
Confidence            45566666666788999999999998  45   44  6889998877643322     5678889888999999999999


Q ss_pred             eCCCCceeeeEEEEEcCcCcccc
Q psy11131        125 RSDGDVAQGSAELQLGGTRNIKH  147 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v~~~p~~~~  147 (150)
                      |..| .....+.+.+..++.+-+
T Consensus        81 n~~g-~~~~~~~~~~s~p~~L~v  102 (103)
T d1iama1          81 LDLR-PQGLELFENTSAPYQLQT  102 (103)
T ss_dssp             EECG-GGTSCEEEEECCCEECEE
T ss_pred             eCCC-CccCeEeeeEcCCCEEEe
Confidence            9988 566677777777665543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.8e-13  Score=71.31  Aligned_cols=82  Identities=18%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee-c-CcccCCCcc---------eeeEEEccCCCCCCceEEEE
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK-D-GRQIPGRTS---------STSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~-~-~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~  122 (150)
                      |.+. ......+.+|+.+.|.|.+. .|   .|.+.|++ + +........         ...|.|.++..+|.|.|.|.
T Consensus         3 P~f~-~~~~~~v~~G~~v~l~C~~~g~p---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           3 PHFL-RIQNVEVNAGQFATFQCSAIGRT---VAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             CEEC-CCCCEEECSSSCEEEEEEEESCC---CSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             Ceec-ccCCEEEeCCCEEEEEEEEeecC---CCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEE
Confidence            3443 46678899999999999999 77   66544432 2 221111111         35799999999999999999


Q ss_pred             EEeCCCCceeeeEEEEEc
Q psy11131        123 ARRSDGDVAQGSAELQLG  140 (150)
Q Consensus       123 ~~~~~g~~~~~~~~l~v~  140 (150)
                      +.|..|...+..+.|.|+
T Consensus        79 a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEEEEC
Confidence            999999545666777763

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=3.6e-13  Score=74.43  Aligned_cols=75  Identities=28%  Similarity=0.457  Sum_probs=57.6

Q ss_pred             EEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc----------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         65 SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~----------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .+.+|+.+.|.|.+.  .|   .+.+.|++++..+.....                ...|.|.++..+|.|.|.|.|.|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   89 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSP---PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG   89 (110)
T ss_dssp             EEETTSCEEEEEECSCCBS---CCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECS
T ss_pred             EEecCCeEEEEEEeecCCC---CCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEEC
Confidence            577899999999985  77   899999998875533211                347899999999999999999999


Q ss_pred             CCCce-eeeEEEEEcCc
Q psy11131        127 DGDVA-QGSAELQLGGT  142 (150)
Q Consensus       127 ~g~~~-~~~~~l~v~~~  142 (150)
                      .|... +..+.+.|.+-
T Consensus        90 ~G~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          90 YGTAMRSEAAHMDAVEL  106 (110)
T ss_dssp             SSCCEECCCEEEEEESS
T ss_pred             CCcEEEEEEEEEEEEec
Confidence            98422 34667766543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-13  Score=73.36  Aligned_cols=72  Identities=19%  Similarity=0.282  Sum_probs=57.3

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      +|.+...+....+.+|+.+.|.|.+. .|.  .+.+.|++++..+.....     ...|.|.++..+|+|.|.|.+.|..
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~--~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPED--NATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTC--CSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCC--CceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            35555666677888999999999988 551  468999999887765443     5679999999999999999987644

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=6e-13  Score=72.56  Aligned_cols=79  Identities=19%  Similarity=0.321  Sum_probs=58.6

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC------------cc----eeeEEEccCCCCCCceE
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR------------TS----STSLVINPVGREDRGIY  119 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~------------~~----~~~l~~~~~~~~~~g~y  119 (150)
                      +...+....+.+|+.+.|.|.+. .|   .|.+.|++.+......            ..    ...|.|.++..+|.|.|
T Consensus         4 V~t~~~~v~v~~G~~v~l~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y   80 (102)
T d1f97a1           4 VYTAQSDVQVPENESIKLTCTYSGFS---SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (102)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCS---SEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             EEccCCcEEEeCCCEEEEEEEcCCCC---CCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEE
Confidence            33445667889999999999999 88   9999998754331110            00    35799999999999999


Q ss_pred             EEEEEeCCCCceeeeEEEEE
Q psy11131        120 QCIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       120 ~C~~~~~~g~~~~~~~~l~v  139 (150)
                      .|.+.|..| .....+.+.|
T Consensus        81 ~C~a~n~~g-~~~~~~~v~v   99 (102)
T d1f97a1          81 TCMVSEEGG-QNYGEVSIHL   99 (102)
T ss_dssp             EEEEEETTS-SSEEEEEEEE
T ss_pred             EEEEEECCC-CEEEEEEEEE
Confidence            999999998 3444444443

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.6e-13  Score=74.38  Aligned_cols=77  Identities=19%  Similarity=0.428  Sum_probs=58.5

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc------------c----eeeEEEccCCCCCCceEEE
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT------------S----STSLVINPVGREDRGIYQC  121 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~------------~----~~~l~~~~~~~~~~g~y~C  121 (150)
                      ..+..+.+.+|+.+.|.|.+. .|   .|.+.|++++..+....            .    ...|.|.++..+|.|.|.|
T Consensus         9 ~~~~~v~v~~g~~v~L~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (105)
T d1nbqa1           9 SSEPEVRIPENNPVKLSCAYSGFS---SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTC   85 (105)
T ss_dssp             CSCSBCCEETTCCCEEECEEESCS---SEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEE
T ss_pred             CCCCeEEEeCCCeEEEEEEeCCCC---CCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEE
Confidence            345556788999999999999 99   99999998654322100            0    3579999999999999999


Q ss_pred             EEEeCCCCceeeeEEEEE
Q psy11131        122 IARRSDGDVAQGSAELQL  139 (150)
Q Consensus       122 ~~~~~~g~~~~~~~~l~v  139 (150)
                      .+.|..|. ....+.+.|
T Consensus        86 ~a~n~~G~-~~~~~~v~v  102 (105)
T d1nbqa1          86 MVSEEGGN-SYGEVKVKL  102 (105)
T ss_dssp             EEEETTSS-CEECCEEEC
T ss_pred             EEEECCCC-EEEEEEEEE
Confidence            99999994 545555544

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-13  Score=75.91  Aligned_cols=65  Identities=31%  Similarity=0.555  Sum_probs=53.3

Q ss_pred             CcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc---------------eeeEEEccCCCCCCceEEEEEE
Q psy11131         62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ....+.+|+.+.|.|.+.  .|   .+.+.|++++..+.....               ...|.|.++..+|.|.|.|.+.
T Consensus        10 ~~~~v~~G~~v~l~C~~~~g~p---~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   86 (104)
T d1nbqa2          10 IPSSATIGNRAVLTCSEQDGSP---PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR   86 (104)
T ss_dssp             CBSEEETTSCEEECCCCCSCBS---CCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEE
T ss_pred             CCCEEecCCcEEEEEEeecCCC---CCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEE
Confidence            344678899999999984  77   899999998876543321               3578999999999999999999


Q ss_pred             eCCCC
Q psy11131        125 RSDGD  129 (150)
Q Consensus       125 ~~~g~  129 (150)
                      |..|.
T Consensus        87 N~~G~   91 (104)
T d1nbqa2          87 NGYGT   91 (104)
T ss_dssp             CSSSC
T ss_pred             ECCCc
Confidence            99983

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2e-12  Score=71.05  Aligned_cols=71  Identities=20%  Similarity=0.369  Sum_probs=57.7

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------------------eeeEEEccCCCCCCce-EEE
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------------------STSLVINPVGREDRGI-YQC  121 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------------------~~~l~~~~~~~~~~g~-y~C  121 (150)
                      ..+.+|+.+.|.|.+. .|   .|.+.|.+++..+.....                    .+.|.|..+..+|.|. |.|
T Consensus        12 i~v~~G~~v~l~C~v~g~P---~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C   88 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQL---SDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC   88 (107)
T ss_dssp             EECCTTCCEEEEEEEEECT---TCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEE
T ss_pred             EEEeCCCEEEEEEEeccCC---CCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEE
Confidence            4567899999999999 99   999999998876543221                    3579999999999995 999


Q ss_pred             EEEeCCCCceeeeEEEE
Q psy11131        122 IARRSDGDVAQGSAELQ  138 (150)
Q Consensus       122 ~~~~~~g~~~~~~~~l~  138 (150)
                      .|.|..| .....+.|.
T Consensus        89 ~A~N~~G-~~~~~i~L~  104 (107)
T d1iray3          89 FAKNTHG-IDAAYIQLI  104 (107)
T ss_dssp             EEECSSC-EEEEEEEEE
T ss_pred             EEEeCCC-eEEEEEEEE
Confidence            9999999 566666664

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.3e-14  Score=81.09  Aligned_cols=90  Identities=26%  Similarity=0.337  Sum_probs=68.6

Q ss_pred             EEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCC
Q psy11131         49 LQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGR  113 (150)
Q Consensus        49 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~  113 (150)
                      |+|.+||.+.. +....+.+|+.+.|.|.+. .|.  .+.+.|++++..+.....              ...|.|.++..
T Consensus         2 L~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p--~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~   78 (115)
T d2crya1           2 LTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPP--PDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   78 (115)
T ss_dssp             CCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSC--CSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             eEEecCCEEec-CCCEEEecCCEEEEEEEeecCCC--eeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch
Confidence            56777776653 3445677899999999998 441  668999998876654321              24699999999


Q ss_pred             CC-CceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131        114 ED-RGIYQCIARRSDGDVAQGSAELQLGGT  142 (150)
Q Consensus       114 ~~-~g~y~C~~~~~~g~~~~~~~~l~v~~~  142 (150)
                      .| +|.|.|.|.|..| ..+..+.|.|...
T Consensus        79 ~D~~G~Y~C~A~N~~G-~~~~~~~L~V~~~  107 (115)
T d2crya1          79 ADFQTIYNCTAWNSFG-SDTEIIRLKEQGS  107 (115)
T ss_dssp             HHHHSCEEEEEECSSC-EEEEEECCCCSCS
T ss_pred             hcCCeEEEEEEEECCC-eEEEEEEEEEECC
Confidence            98 6899999999999 6888888888654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.7e-12  Score=68.52  Aligned_cols=63  Identities=17%  Similarity=0.376  Sum_probs=52.7

Q ss_pred             EEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      ..+.+|+++.|.|.+..|   .+.+.|++++..+.....      ...|.|.++..+|.|.|.|.+.|..|.
T Consensus         7 ~~~~~G~~~~l~C~~~g~---~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           7 HFFKHGGTAELKCSQKSN---LARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEETTSCEEECCCCSCT---TCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             eeEeCCCEEEEEEEeecc---CCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCC
Confidence            457899999999998755   679999998887654432      558999999999999999999998873

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.35  E-value=1.9e-12  Score=70.84  Aligned_cols=65  Identities=15%  Similarity=0.141  Sum_probs=53.6

Q ss_pred             CcEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecCcccCCCc--c------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         62 PLLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDGRQIPGRT--S------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~~~~~~--~------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      ..+.+.+|+.+.|.|.+ . .|   .+.+.|++++..+....  .      ...|.|.++..+|.|.|.|.+.|..|.
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p---~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYP---ALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEES---CCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CCEEEeCCCeEEEEEEccCCCC---CCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCC
Confidence            45788999999999997 4 78   89999999887653221  1      457999999999999999999998873

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.33  E-value=1.6e-12  Score=68.43  Aligned_cols=78  Identities=21%  Similarity=0.394  Sum_probs=59.4

Q ss_pred             eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131         56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS  134 (150)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~  134 (150)
                      .+.+.|....+.+|+.+.|.|.+. .|.  ...+.|++++..+...  ...|.|..+..+|.|.|.|.+.|..+   +..
T Consensus         6 ~i~~~P~~~~v~~G~~v~L~C~~~~~~~--~~~~~w~~~g~~~~~~--~~~l~i~~v~~~dsG~Y~C~a~ns~~---S~~   78 (85)
T d2fcba1           6 VLKLEPQWINVLQEDSVTLTCRGTHSPE--SDSIQWFHNGNLIPTH--TQPSYRFKANNNDSGEYTCQTGQTSL---SDP   78 (85)
T ss_dssp             EEEEESCCSEEETTCEEEEEEECSSCCC--TTCCEEEETTEECTTC--CSSEEEEECCGGGCEEEEEECTTSBC---CCC
T ss_pred             EEEECCCCeEEcCCCeEEEEEEEeeccc--eeEEEeeccccccccc--ccceEEeeccccCCcEEEEECCCCcc---ccc
Confidence            445556667889999999999998 661  3467888888877544  46899999999999999999876543   555


Q ss_pred             EEEEEc
Q psy11131        135 AELQLG  140 (150)
Q Consensus       135 ~~l~v~  140 (150)
                      +.|.|.
T Consensus        79 v~l~V~   84 (85)
T d2fcba1          79 VHLTVL   84 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666653

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.2e-12  Score=66.72  Aligned_cols=72  Identities=24%  Similarity=0.394  Sum_probs=56.2

Q ss_pred             CCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      +....+.+|+.+.|.|.+..|   .+.+.|++++..+.....         ...|.|.++...|.|.|.|.+.|     .
T Consensus        13 ~~~~~v~~G~~v~l~c~v~~p---~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n-----~   84 (94)
T d1pd6a_          13 EPAYQVSKGHKIRLTVELADH---DAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG-----E   84 (94)
T ss_dssp             CSEEEEETTSCEEEEEECSSS---SSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT-----E
T ss_pred             CCCEEECcCCeEEEEEEECCC---CceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee-----E
Confidence            344678899999999997666   788999999988765432         45799999999999999999854     3


Q ss_pred             eeeEEEEEc
Q psy11131        132 QGSAELQLG  140 (150)
Q Consensus       132 ~~~~~l~v~  140 (150)
                      +.++.|.|.
T Consensus        85 ~~s~~l~V~   93 (94)
T d1pd6a_          85 KCSTELFVK   93 (94)
T ss_dssp             EECCEEEEE
T ss_pred             EEEEEEEEE
Confidence            445556553

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.7e-12  Score=68.03  Aligned_cols=76  Identities=17%  Similarity=0.255  Sum_probs=57.7

Q ss_pred             EEEecCCcEEEEE------Eec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCc-
Q psy11131         64 LSVHLDGSANFQC------EIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDV-  130 (150)
Q Consensus        64 ~~~~~g~~~~l~C------~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~-  130 (150)
                      ..+..|....|.|      ... .|   .|.+.|++++..+.....     ...|.|.++..+|+|.|+|.+.|..+.. 
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p---~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNE---LPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTB---CCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCC---CCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEE
Confidence            4577899999999      445 67   899999999988865433     4689999999999999999999876532 


Q ss_pred             --eeeeEEEEEcCc
Q psy11131        131 --AQGSAELQLGGT  142 (150)
Q Consensus       131 --~~~~~~l~v~~~  142 (150)
                        ....+.+.+...
T Consensus        86 ~~vt~~i~~~v~~~   99 (103)
T d1iray2          86 YPITRVIEFITLEE   99 (103)
T ss_dssp             EEEEEEEEEEEECC
T ss_pred             EEEEEEEEEEECCC
Confidence              234445554443

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.29  E-value=2.5e-12  Score=67.55  Aligned_cols=77  Identities=22%  Similarity=0.371  Sum_probs=57.5

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE-EEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~-~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      |.+...|....+.+|+.+.|.|.+. .|   .+. +.|++++..+...  ...|.|.++..+|+|.|.|.+.+..   .+
T Consensus         6 pvi~~~P~~~~v~~G~~vtL~C~~~~~~---~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~~s~---~S   77 (84)
T d1fnla1           6 AVVFLEPQWYSVLEKDSVTLKCQGAYSP---EDNSTQWFHNESLISSQ--ASSYFIDAATVNDSGEYRCQTNLST---LS   77 (84)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCCBT---TBCCCEEEETTEEEESS--CSEEEESSCCGGGCEEEEEECSSSC---CC
T ss_pred             CEEEECCCCcEEeCCCeEEEEEEeccCC---CCeEEEEeeeceeeeec--ceeeEecCCcccCCEEEEEEccCCC---cc
Confidence            4455667677889999999999998 66   554 5566777665443  5689999999999999999987643   35


Q ss_pred             eeEEEEE
Q psy11131        133 GSAELQL  139 (150)
Q Consensus       133 ~~~~l~v  139 (150)
                      ..+.|.|
T Consensus        78 ~~v~L~V   84 (84)
T d1fnla1          78 DPVQLEV   84 (84)
T ss_dssp             CCEEEEE
T ss_pred             ccEEEEC
Confidence            5566554

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.8e-11  Score=65.03  Aligned_cols=73  Identities=21%  Similarity=0.363  Sum_probs=56.9

Q ss_pred             CCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      ......+.+|+.+.|.|.+..|   .+.+.|++++..+.....          ...|.|.++..+|+|.|.|.+.|    
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----   78 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVSED---DANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----   78 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECSSS---SCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----
T ss_pred             CCCCEEEeCCCcEEEEEEECCC---CceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----
Confidence            3456788999999999998766   778999999877654332          35799999999999999999864    


Q ss_pred             ceeeeEEEEEc
Q psy11131        130 VAQGSAELQLG  140 (150)
Q Consensus       130 ~~~~~~~l~v~  140 (150)
                       ...++.|.|.
T Consensus        79 -~~~~a~l~V~   88 (90)
T d1x44a1          79 -GQSSAKLSVD   88 (90)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -ceEEEEEEEE
Confidence             3445666654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.9e-12  Score=66.98  Aligned_cols=78  Identities=22%  Similarity=0.389  Sum_probs=56.2

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ  132 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~  132 (150)
                      |.+...|....+.+|+.+.|.|.+. .|   .+ .+.|++++..+...  ...|.|..+..+|.|.|.|.+.+..+   +
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~---~~~~~~~~~~~~~~~~~--~~~l~i~~v~~~d~G~Y~C~a~~s~~---S   73 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFF---EVSSTKWFHNGSLSEET--NSSLNIVNAKFEDSGEYKCQHQQVNE---S   73 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC-------CCEEEETTEECSCC--SSEEEECSCCGGGCEEEEEECTTSSC---C
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeee---eecceeeeeeeeeeecc--cceeEECCCChhhCCcEEEEecCCCC---c
Confidence            3445556667789999999999998 76   55 44556777666543  46899999999999999999876543   5


Q ss_pred             eeEEEEEc
Q psy11131        133 GSAELQLG  140 (150)
Q Consensus       133 ~~~~l~v~  140 (150)
                      ..+.|.|.
T Consensus        74 ~~v~l~V~   81 (82)
T d1f2qa1          74 EPVYLEVF   81 (82)
T ss_dssp             CCEEEEEE
T ss_pred             ccEEEEEE
Confidence            56666653

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.16  E-value=7.7e-12  Score=66.33  Aligned_cols=73  Identities=15%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             CCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      ......+.+|+.+.|.|....|   .+.+.|++++..+.....        ...|.|.++...|+|.|.|.+.|.     
T Consensus         7 ~l~d~~v~~G~~~~~~c~vs~p---~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~-----   78 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIELSEP---DVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA-----   78 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBCSSS---SCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC-----
T ss_pred             CCcCEEEeCCCcEEEEEEECCC---CcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce-----
Confidence            3456788999999999987677   788999999988765543        457999999999999999997653     


Q ss_pred             eeeEEEEEc
Q psy11131        132 QGSAELQLG  140 (150)
Q Consensus       132 ~~~~~l~v~  140 (150)
                      ..++.|.|.
T Consensus        79 ~~sa~l~V~   87 (89)
T d1tiua_          79 KSAANLKVK   87 (89)
T ss_dssp             BCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence            334556554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.5e-11  Score=66.43  Aligned_cols=78  Identities=10%  Similarity=0.127  Sum_probs=54.6

Q ss_pred             EEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131         64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGDVA  131 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~  131 (150)
                      ..+.+|+.+.|.|.+.  .|.. .+.+.|++++..+.....          .+.|.+.....+|.|.|+|.|.|..+ ..
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~-~~   89 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLD-SLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM-SR   89 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGG-GEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG-GG
T ss_pred             CEEeCCCEEEEEEEEeCcccCC-CceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCC-CC
Confidence            3577999999999997  3300 458999999876542211          34566676677777899999999887 34


Q ss_pred             eeeEEEEEcCcC
Q psy11131        132 QGSAELQLGGTR  143 (150)
Q Consensus       132 ~~~~~l~v~~~p  143 (150)
                      ...+.+.+..+.
T Consensus        90 ~~~~~~~~s~p~  101 (106)
T d1zxqa1          90 GGNIFHKHSAPK  101 (106)
T ss_dssp             TCCEEEEECCCE
T ss_pred             CCeeEecccCCc
Confidence            556666665543

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.12  E-value=5.1e-11  Score=65.65  Aligned_cols=67  Identities=19%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             EEecCCcEEEEEEe-c-CCCCCCcEEEEeecCcccCCCcc------------eeeEEEccCCCCCCc---eEEEEEEeCC
Q psy11131         65 SVHLDGSANFQCEI-T-PYDSGPYLIAWFKDGRQIPGRTS------------STSLVINPVGREDRG---IYQCIARRSD  127 (150)
Q Consensus        65 ~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~~~~~~~------------~~~l~~~~~~~~~~g---~y~C~~~~~~  127 (150)
                      .+.+|+.+.|.|.+ . .|   .|.+.|++++..+.....            ...|.|.+++..|.|   .|.|.|.|..
T Consensus        13 t~~EG~~~~L~C~v~~G~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYP---KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             CCBTTEEEEECCCCCEEES---CCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             cccCCCeEEEEEEcccCCC---CCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCC
Confidence            35689999999997 5 89   999999997655422111            457999999888776   6999999999


Q ss_pred             CCceeeeE
Q psy11131        128 GDVAQGSA  135 (150)
Q Consensus       128 g~~~~~~~  135 (150)
                      |. ....+
T Consensus        90 g~-~~~~~   96 (111)
T d1biha2          90 VD-EEVVL   96 (111)
T ss_dssp             CS-SCEEE
T ss_pred             CC-ceEEE
Confidence            84 43433

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1.1e-09  Score=61.36  Aligned_cols=80  Identities=19%  Similarity=0.320  Sum_probs=57.4

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc-------------C----CCcc-----------eeeEEEccCCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI-------------P----GRTS-----------STSLVINPVGR  113 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~-------------~----~~~~-----------~~~l~~~~~~~  113 (150)
                      .+.+.+|+++.|.|... ........+.|++.+...             .    ...+           ...|.|.++..
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            46788999999999875 221115678998753210             0    0000           36899999999


Q ss_pred             CCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        114 EDRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       114 ~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      +|+|.|.|.+.+..+ ..+..+.|.|.+|+
T Consensus        91 ~D~G~Y~C~v~~~~~-~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSY-QEEAAVELKVEDPF  119 (126)
T ss_dssp             GGCEEEEEEEEETTE-EEEEEEEEEEECTT
T ss_pred             hHCeEEEEEEEECCC-EEEEEEEEEEeCCC
Confidence            999999999998877 56778889998754

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=5.4e-10  Score=60.06  Aligned_cols=75  Identities=15%  Similarity=0.200  Sum_probs=55.6

Q ss_pred             cEEEecCCcEEEEEEec---CCCCCCcEEEEeecCcccCC----------Ccc-----eeeEEEccCCCCCCceEEEEEE
Q psy11131         63 LLSVHLDGSANFQCEIT---PYDSGPYLIAWFKDGRQIPG----------RTS-----STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~---~p~~~~~~~~w~~~~~~~~~----------~~~-----~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      .+....|+.+.|.|...   ..   ...+.|.+++..+..          ...     ..+|.|.++..+|+|.|.|.+.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~---i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDD---IDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTT---EEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccc---hheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEE
Confidence            34577899999999643   22   568999887654311          001     4679999999999999999999


Q ss_pred             eCCCCc-eeeeEEEEEc
Q psy11131        125 RSDGDV-AQGSAELQLG  140 (150)
Q Consensus       125 ~~~g~~-~~~~~~l~v~  140 (150)
                      +..|.. ..+++.|.|.
T Consensus        81 ~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          81 STNGTRILNKALDLRIL   97 (98)
T ss_dssp             ETTCCEEEEEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEEE
Confidence            988842 3677888775

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.01  E-value=7.4e-10  Score=58.46  Aligned_cols=50  Identities=30%  Similarity=0.410  Sum_probs=44.0

Q ss_pred             eecCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131          4 LLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus         4 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .++..+.++.+..+.|.|.++..+|+|.|+|.+.|..|.....+.|.|.+
T Consensus        40 ~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~A   89 (89)
T d1cs6a4          40 QPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA   89 (89)
T ss_dssp             EECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEEC
Confidence            35667788888889999999999999999999999999988889998863

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.4e-10  Score=60.84  Aligned_cols=71  Identities=15%  Similarity=0.113  Sum_probs=52.0

Q ss_pred             cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCC------------c------ceeeEEEccCCCCCCceEEEEEE
Q psy11131         63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------T------SSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~------------~------~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      .+.+.+|++++|.|....|   .+.+.|.+++..+...            .      ....|.|.++..+|+|.|.|.+.
T Consensus         4 ~v~~~~G~sVtl~c~~~~p---~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~   80 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSNVP---LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP   80 (93)
T ss_dssp             EEEEETTCCEEECCCCSSC---CSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEECCCEEEEecCCCC---CcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEE
Confidence            3567899999999986677   7889999876543100            0      03579999999999999999988


Q ss_pred             eCCCCceeeeEEEEE
Q psy11131        125 RSDGDVAQGSAELQL  139 (150)
Q Consensus       125 ~~~g~~~~~~~~l~v  139 (150)
                      |..+   +..+.|.|
T Consensus        81 n~~~---t~~~~l~V   92 (93)
T d1ccza1          81 NITD---TMKFFLYV   92 (93)
T ss_dssp             TCCS---CEEEEEEE
T ss_pred             CCCc---EEEEEEEE
Confidence            7655   23345544

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=9.7e-09  Score=54.67  Aligned_cols=83  Identities=14%  Similarity=0.154  Sum_probs=59.1

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccC----C---CcceeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----G---RTSSTSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~----~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      |.+...|.. .+..|.++.|.|....+   ...+.|++++....    .   ......|.|.++...|.|.|.|...+..
T Consensus         5 PsLsa~P~~-~V~~G~~VTL~C~~~~~---~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           5 PFIWAEPHF-MVPKEKQVTICCQGNYG---AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT---CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEeeCCC-cccCCCcEEEEEecCCC---ccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            444444443 46799999999998744   67888888765321    1   1115689999999999999999998765


Q ss_pred             C-CceeeeEEEEEcC
Q psy11131        128 G-DVAQGSAELQLGG  141 (150)
Q Consensus       128 g-~~~~~~~~l~v~~  141 (150)
                      + ...+..+.|.|.+
T Consensus        81 ~~S~~Sd~leL~VTd   95 (95)
T d1olla1          81 LWSEPSNLLDLVVTE   95 (95)
T ss_dssp             EECCCCCCEEEEEES
T ss_pred             CccCCCCCEEEEEeC
Confidence            4 3457778887753

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7e-09  Score=55.70  Aligned_cols=81  Identities=21%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCC---------cceeeEEEccCCCCCCceEEEEEEe
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR---------TSSTSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~---------~~~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      |.+...|.. .+..|++++|.|....+   ...+.|++++......         .....+.|.++...|.|.|.|...+
T Consensus         8 PsLsa~P~~-~V~~G~~VTL~C~~~~~---~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           8 PFISAKSSP-VIPLDGSVKIQCQAIRE---AYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCEEESSCS-EEETTCCEEEEECCCTT---CSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CEEEecCCC-ceeCCCeEEEEEcCCCC---CcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            445555543 47789999999987755   6788888865421110         0145799999999999999999998


Q ss_pred             CCC-CceeeeEEEEE
Q psy11131        126 SDG-DVAQGSAELQL  139 (150)
Q Consensus       126 ~~g-~~~~~~~~l~v  139 (150)
                      ... ...+..+.|.|
T Consensus        84 ~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          84 GHYRFRYSDTLELVV   98 (99)
T ss_dssp             TTTEEEECCCEEEEE
T ss_pred             CCcccCCCCCEEEEe
Confidence            765 23566777766

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.1e-09  Score=57.30  Aligned_cols=51  Identities=24%  Similarity=0.229  Sum_probs=42.4

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ++..+.++.+..    ..|.|.++..+|+|.|+|.+.|..|..+..+.|.|.+.|
T Consensus        40 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P   94 (101)
T d2cqva1          40 QIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP   94 (101)
T ss_dssp             BCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSC
T ss_pred             eeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecC
Confidence            344556666543    579999999999999999999999999999999998765

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.86  E-value=6.3e-09  Score=54.76  Aligned_cols=45  Identities=36%  Similarity=0.532  Sum_probs=39.0

Q ss_pred             CCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131          8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus         8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      .+.++.+..+.|.|.++...|+|.|.|.+.|..|.....+.|.|.
T Consensus        45 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1biha4          45 SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN   89 (89)
T ss_dssp             CSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEEC
Confidence            345777777899999999999999999999999988888888773

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.5e-09  Score=59.00  Aligned_cols=46  Identities=30%  Similarity=0.473  Sum_probs=38.3

Q ss_pred             CCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131          8 PGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus         8 ~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      .+.|+.+..    ..|.|.++..+|+|.|+|.+.|..|..++.+.|.|.+
T Consensus        81 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          81 TEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             CSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             cCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            445555433    5799999999999999999999999999999998863

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=3.5e-09  Score=57.71  Aligned_cols=71  Identities=15%  Similarity=0.184  Sum_probs=50.6

Q ss_pred             EecCCcEEEEEEec-CCCCCCcEEEEeecCcccC---------C----------Ccc-----eeeEEEccCCCCCCceEE
Q psy11131         66 VHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP---------G----------RTS-----STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        66 ~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~---------~----------~~~-----~~~l~~~~~~~~~~g~y~  120 (150)
                      +.+|+++.|.|... ..   ...+.|++......         .          ..+     ..+|.|.++..+|+|.|.
T Consensus        11 v~~G~~V~L~c~~~p~~---~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLA---LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             CCTTCCEEEEEESCCTT---CSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred             ccCCCCEEEEecCCCCC---ceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEE
Confidence            46899999999865 44   67899987432100         0          001     568999999999999999


Q ss_pred             EEEEeCCCCceeeeEEEEE
Q psy11131        121 CIARRSDGDVAQGSAELQL  139 (150)
Q Consensus       121 C~~~~~~g~~~~~~~~l~v  139 (150)
                      |.+.+..+.....++.|.|
T Consensus        88 c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          88 LDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEETTEEECCCCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9998776534555566654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.6e-08  Score=55.34  Aligned_cols=77  Identities=23%  Similarity=0.413  Sum_probs=53.2

Q ss_pred             cEEEecCCcEEEEEEec-CC-CCCCcEEEEeecCccc----------------C---CC--cc-----------eeeEEE
Q psy11131         63 LLSVHLDGSANFQCEIT-PY-DSGPYLIAWFKDGRQI----------------P---GR--TS-----------STSLVI  108 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~~~~~----------------~---~~--~~-----------~~~l~~  108 (150)
                      .+.+.+|+++.|.|... .+ ......+.|++.....                .   ..  .+           ...|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            35678999999999976 33 1114568897631110                0   00  00           247999


Q ss_pred             ccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131        109 NPVGREDRGIYQCIARRSDGDVAQGSAELQLG  140 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~  140 (150)
                      .++..+|+|.|.|.+.+..+ .....+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~-~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPG-VANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCC-eEEeEEEEEEE
Confidence            99999999999999998877 56777777764

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.4e-08  Score=53.36  Aligned_cols=42  Identities=33%  Similarity=0.505  Sum_probs=36.2

Q ss_pred             ceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        11 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +.....+.|.|.++..+|+|.|+|.+.|..|..+..+.|.|.
T Consensus        48 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          48 RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             TEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ccEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            344455899999999999999999999999998888888774

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2e-08  Score=54.06  Aligned_cols=47  Identities=19%  Similarity=0.174  Sum_probs=39.9

Q ss_pred             CCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131          8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus         8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      ...++...+++|.|.+++.+|+|.|+|.+.|..|.....+.|.|...
T Consensus        50 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~~   96 (101)
T d1iray1          50 QASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN   96 (101)
T ss_dssp             TTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             cceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEeC
Confidence            33455556689999999999999999999999999888999998753

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.76  E-value=7.2e-09  Score=54.74  Aligned_cols=47  Identities=28%  Similarity=0.423  Sum_probs=37.9

Q ss_pred             cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131          6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus         6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +..+.++.+..    +.|.|.++..+|+|.|.|.+.|..|..+..+.|.|+
T Consensus        40 l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          40 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             TCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEECC
T ss_pred             cccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEEE
Confidence            34445544332    789999999999999999999999998888888775

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.5e-08  Score=52.64  Aligned_cols=43  Identities=19%  Similarity=0.257  Sum_probs=37.1

Q ss_pred             EEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         13 RVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        13 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ......|.|.++..+|+|.|.|.+.|..|.....+.|.|.+.|
T Consensus        41 ~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          41 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECCC
T ss_pred             eeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEecC
Confidence            3334789999999999999999999999999999999988643

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=1.6e-08  Score=54.09  Aligned_cols=45  Identities=24%  Similarity=0.379  Sum_probs=35.7

Q ss_pred             CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce--eEEEEEEEe
Q psy11131          8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVS   52 (150)
Q Consensus         8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~   52 (150)
                      .+.++.+.. ++|+|.+++.+|+|.|+|.+.+..|..  ...+.|.|.
T Consensus        50 ~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          50 KSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             SSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             CCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence            445665555 899999999999999999998877764  566777775

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.74  E-value=8.6e-09  Score=54.45  Aligned_cols=36  Identities=42%  Similarity=0.743  Sum_probs=33.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +.|.|.++..+|+|.|+|.+.|..|..+..+.|.|+
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          55 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             SEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            789999999999999999999999998888888886

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.73  E-value=1.5e-08  Score=54.56  Aligned_cols=49  Identities=31%  Similarity=0.337  Sum_probs=40.2

Q ss_pred             ecCCCCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131          5 LVLPGPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus         5 ~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      ++..+.++.+..     ..|.|.++..+|+|.|+|.+.|..|.....+.|.|..
T Consensus        48 ~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          48 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET  101 (102)
T ss_dssp             ECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            455566665532     4699999999999999999999999999999998863

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.73  E-value=1.9e-08  Score=53.78  Aligned_cols=49  Identities=29%  Similarity=0.281  Sum_probs=39.4

Q ss_pred             ecCCCCceEEe---C--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131          5 LVLPGPRTRVL---G--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus         5 ~~~~~~~~~~~---~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      ++..+.++...   +  ..|.|.++...|.|.|+|.+.|..|..+..+.|.|..
T Consensus        44 ~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          44 KIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             ECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            44555554432   2  4799999999999999999999999999999998874

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.4e-08  Score=54.17  Aligned_cols=51  Identities=24%  Similarity=0.346  Sum_probs=40.4

Q ss_pred             ecCCCCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEecCc
Q psy11131          5 LVLPGPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPY   55 (150)
Q Consensus         5 ~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~   55 (150)
                      ++..+.+..+..  +.|.|.+++.+|.|.|+|.+.|..|.. +..+.|.|..+|
T Consensus        42 ~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          42 SLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             ECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             ecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence            445556666655  789999999999999999999987765 456888888765

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.7e-08  Score=55.19  Aligned_cols=38  Identities=24%  Similarity=0.278  Sum_probs=35.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      ..|.|.+++.+|+|.|+|.+.|..|..++.+.|.|.++
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          72 FELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEec
Confidence            46999999999999999999999999999999999863

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.70  E-value=1.1e-08  Score=54.29  Aligned_cols=46  Identities=24%  Similarity=0.242  Sum_probs=37.4

Q ss_pred             CCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131          7 LPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus         7 ~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..+.++.+..    ..|.|.++..+|+|.|.|.+.|..|..+..+.|.|+
T Consensus        44 ~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          44 ALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             BCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEEC
Confidence            3444444433    579999999999999999999999999988888874

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=2.1e-07  Score=51.27  Aligned_cols=82  Identities=13%  Similarity=0.210  Sum_probs=51.6

Q ss_pred             eCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC--cc----c---------C-C----Ccc----------eeeE
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG--RQ----I---------P-G----RTS----------STSL  106 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~--~~----~---------~-~----~~~----------~~~l  106 (150)
                      ..|..+.+..|+.+.|.|...  .+......+.|++..  ..    +         . .    ..+          ...|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            346667889999999999865  221114588997521  10    0         0 0    000          3579


Q ss_pred             EEccCCCCCCceEEEEEEeCCC-CceeeeEEEEEc
Q psy11131        107 VINPVGREDRGIYQCIARRSDG-DVAQGSAELQLG  140 (150)
Q Consensus       107 ~~~~~~~~~~g~y~C~~~~~~g-~~~~~~~~l~v~  140 (150)
                      .|.++...|+|.|.|.+.+..+ ......+.|.|.
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999999999987543 123444566553

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.1e-08  Score=55.00  Aligned_cols=39  Identities=18%  Similarity=0.225  Sum_probs=35.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ..|.|.++..+|+|.|+|.+.|..|..++.+.|.|.+++
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          68 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCC
T ss_pred             EEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            359999999999999999999999999999999998653

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.9e-07  Score=48.85  Aligned_cols=82  Identities=15%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCC-
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSD-  127 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~-  127 (150)
                      +|.+...|.. .+..|.+++|.|... ..   ...+.|++++........    ...+.+..+...|.|.|.|...... 
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~---~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~   80 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIP---FDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRS   80 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSC---CSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTS
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCC---ceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcCCC
Confidence            3445554543 578999999999875 55   668999998764332211    4679999999999999999987432 


Q ss_pred             ---CCceeeeEEEEE
Q psy11131        128 ---GDVAQGSAELQL  139 (150)
Q Consensus       128 ---g~~~~~~~~l~v  139 (150)
                         ....+..+.|.|
T Consensus        81 p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          81 PYLWSFPSNALELVV   95 (96)
T ss_dssp             TTEECCCCCCEEEEE
T ss_pred             CCCccCCCCCEEEEE
Confidence               124466677765

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.66  E-value=8.8e-09  Score=55.05  Aligned_cols=50  Identities=22%  Similarity=0.161  Sum_probs=40.0

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      ++..+.++.+..    ..|.|.++..+|+|.|+|.+.|..|..+..+.|.|...
T Consensus        41 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~   94 (97)
T d1koaa1          41 ELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH   94 (97)
T ss_dssp             ECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEECS
T ss_pred             ccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEeec
Confidence            344455555443    46999999999999999999999999888888888753

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.6e-08  Score=53.28  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +.|.|.+++.+|+|.|+|.+.|..+..+..+.|.|+
T Consensus        55 ~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          55 SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEEC
Confidence            679999999999999999999998888888888774

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.2e-08  Score=54.21  Aligned_cols=39  Identities=18%  Similarity=0.125  Sum_probs=35.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ..|.|.++..+|+|.|+|.+.|..|..+..+.|.|.++|
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          62 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             EEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCC
Confidence            459999999999999999999999999999999888654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=3.1e-08  Score=53.12  Aligned_cols=37  Identities=32%  Similarity=0.526  Sum_probs=34.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      +.|.|.++..+|+|.|.|.+.|..|..+..+.|.|.+
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          63 SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            6899999999999999999999999999899998875

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.5e-08  Score=52.20  Aligned_cols=59  Identities=15%  Similarity=0.293  Sum_probs=42.6

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc------------C--CCcc-----------eeeEEEccCCCCCCc
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI------------P--GRTS-----------STSLVINPVGREDRG  117 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~------------~--~~~~-----------~~~l~~~~~~~~~~g  117 (150)
                      +...+|+++.|.|... ..   ...+.|++.....            .  ...+           ...|.|.++..+|+|
T Consensus         4 V~~~~G~svtL~C~~s~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG   80 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   80 (97)
T ss_dssp             EEEETTSCEEECCBCSSSS---CCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred             EEEEcCCcEEEEEEEecCC---CceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCE
Confidence            4567899999999987 55   6678897643210            0  0000           346999999999999


Q ss_pred             eEEEEEEe
Q psy11131        118 IYQCIARR  125 (150)
Q Consensus       118 ~y~C~~~~  125 (150)
                      .|.|.+.+
T Consensus        81 ~Y~C~v~~   88 (97)
T d2nxyb1          81 TYICEVED   88 (97)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEEec
Confidence            99999863

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.8e-08  Score=54.45  Aligned_cols=40  Identities=15%  Similarity=0.146  Sum_probs=36.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR   56 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~   56 (150)
                      +.|.|.+++..|+|.|+|.+.|..|..+..+.|.|.+.|.
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             EEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeCCC
Confidence            4699999999999999999999999999999999887654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.59  E-value=3.8e-08  Score=52.51  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=33.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ++|.|.++..+|+|.|+|.+.|..|.....+.|.|.
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Vl   97 (97)
T d3dara1          62 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV   97 (97)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            789999999999999999999999998888888873

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.6e-07  Score=49.56  Aligned_cols=83  Identities=18%  Similarity=0.356  Sum_probs=56.4

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCc----ceeeEEEccCCCCCCceEEEEEE-eCC-
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT----SSTSLVINPVGREDRGIYQCIAR-RSD-  127 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~----~~~~l~~~~~~~~~~g~y~C~~~-~~~-  127 (150)
                      +|.+...|. ..+..|.+++|.|....+   ...+.|++++.......    ..+.+.|..+...|.|.|.|... ... 
T Consensus         4 kPsLsa~P~-~~V~~G~~VTL~C~~~~~---~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~   79 (93)
T d1olla2           4 TPTLSVHPG-PEVISGEKVTFYCRLDTA---TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHA   79 (93)
T ss_dssp             CCEEEEESC-SEEETTCEEEEEEECSSS---CSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTE
T ss_pred             CCEEEEeCC-CcccCCCcEEEEECCCCC---CCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeECCCCC
Confidence            344444443 347889999999998755   67888988765422111    15789999999999999999743 222 


Q ss_pred             CCceeeeEEEEEc
Q psy11131        128 GDVAQGSAELQLG  140 (150)
Q Consensus       128 g~~~~~~~~l~v~  140 (150)
                      ....+..+.|.|.
T Consensus        80 wS~~SdpLeL~Vt   92 (93)
T d1olla2          80 WSFPSEPVKLLVT   92 (93)
T ss_dssp             ECCCCCCEEEEEE
T ss_pred             cCCCCCCEEEEee
Confidence            1234667777664

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.8e-08  Score=51.75  Aligned_cols=36  Identities=11%  Similarity=0.322  Sum_probs=33.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +.|.|.++..+|+|.|+|.+.|..|..+..+.|.|.
T Consensus        54 ~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          54 STLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            679999999999999999999999998888888875

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.1e-07  Score=51.02  Aligned_cols=43  Identities=28%  Similarity=0.506  Sum_probs=34.6

Q ss_pred             CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..+.....++|.|.+++.+|+|.|+|.+.|..|.....+.+.|
T Consensus        57 ~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          57 ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             TTTEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEE
T ss_pred             eeEEEecCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEE
Confidence            3555656688999999999999999999998888666655554

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.56  E-value=4.7e-08  Score=53.14  Aligned_cols=36  Identities=36%  Similarity=0.470  Sum_probs=33.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..|.|.++..+|+|.|+|.+.|..|...+.+.|.|.
T Consensus        74 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          74 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            569999999999999999999999999999988873

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=6.6e-08  Score=52.19  Aligned_cols=43  Identities=35%  Similarity=0.597  Sum_probs=34.8

Q ss_pred             CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131          9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..+.....++|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus        60 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          60 EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             TTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEEC
T ss_pred             cceeeecCceEEEecccccceeeEEEEEEECCCCEEEEEEEEE
Confidence            4555666688999999999999999999999888766655544

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3e-08  Score=53.91  Aligned_cols=39  Identities=21%  Similarity=0.201  Sum_probs=35.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      ..|.|.++...|+|.|.|.+.|..|...+.+.|.|..+|
T Consensus        63 ~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          63 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCT
T ss_pred             eEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            459999999999999999999999999999999988776

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.6e-07  Score=49.98  Aligned_cols=46  Identities=24%  Similarity=0.403  Sum_probs=34.7

Q ss_pred             CCCCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEe
Q psy11131          7 LPGPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVS   52 (150)
Q Consensus         7 ~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~   52 (150)
                      ..+.++.+..     ++|.|.+++.+|+|.|+|.+.|..|.. ++.+.|.|.
T Consensus        45 ~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          45 PNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             CBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            3445555432     579999999999999999999988764 456777764

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.9e-08  Score=51.92  Aligned_cols=36  Identities=28%  Similarity=0.482  Sum_probs=31.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~   52 (150)
                      ++|.|.++..+|+|.|+|.+.|..|.. +..+.|.|+
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            569999999999999999999999875 455788774

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.2e-07  Score=50.72  Aligned_cols=36  Identities=33%  Similarity=0.607  Sum_probs=31.9

Q ss_pred             CeEEEcCCC-CCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVT-AEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..|.|.++. .+|+|.|.|.+.|..|..+..+.|.|.
T Consensus        65 ~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          65 SELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEEC
Confidence            579999998 479999999999999999888888873

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.50  E-value=6.9e-08  Score=53.83  Aligned_cols=39  Identities=31%  Similarity=0.494  Sum_probs=34.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~   55 (150)
                      .+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.+|.
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          81 VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             EEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            479999999999999999999887778888899998764

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.9e-07  Score=51.32  Aligned_cols=83  Identities=13%  Similarity=0.151  Sum_probs=52.3

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--cc------------CCCcc----------eeeEEEccCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--QI------------PGRTS----------STSLVINPVGRE  114 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~~------------~~~~~----------~~~l~~~~~~~~  114 (150)
                      .|..+.+.+|+++.|.|... ........+.|++...  .+            ....+          ...|.|.++..+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            46677889999999999864 2100023566865321  10            00000          358999999999


Q ss_pred             CCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131        115 DRGIYQCIARRSDGDVAQGSAELQLGGTR  143 (150)
Q Consensus       115 ~~g~y~C~~~~~~g~~~~~~~~l~v~~~p  143 (150)
                      |+|.|.|.+..... .....+.|.|.+..
T Consensus        85 DsG~Y~C~v~~~~~-~~~~~v~L~V~~~~  112 (116)
T d1xeda_          85 DSGRYKCGLGINSR-GLSFDVSLEVLEHH  112 (116)
T ss_dssp             GCEEEEEEESCGGG-CCEEEEEEEEECCC
T ss_pred             CCEEEEEEEEcCCC-CceEeEEEEEECCC
Confidence            99999999864332 34455777776654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.2e-07  Score=50.02  Aligned_cols=41  Identities=27%  Similarity=0.388  Sum_probs=30.6

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL   49 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   49 (150)
                      +.++.+.. ++|.|.+++.+|+|.|+|.+.|..+.......|
T Consensus        41 ~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1          41 SPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             SSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             eeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            34444433 789999999999999999999977765444333

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.5e-07  Score=47.73  Aligned_cols=82  Identities=13%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccC----CCc---ceeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----GRT---SSTSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~----~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      |.+...|. ..+..|++++|.|....+   ...+.+++++....    ...   ....+.|..+...|.|.|.|......
T Consensus         5 P~Lsa~Ps-~~V~~G~~VTL~C~~~~~---~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (96)
T d1ugna1           5 PTLWAEPG-SVITQGSPVTLRCQGGQE---TQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT   80 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTT---CCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEeECC-CccCCCCcEEEEEeCCCC---CCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCCC
Confidence            34444343 347799999999998744   56777888765321    110   14689999999999999999976432


Q ss_pred             -C-CceeeeEEEEEc
Q psy11131        128 -G-DVAQGSAELQLG  140 (150)
Q Consensus       128 -g-~~~~~~~~l~v~  140 (150)
                       . ...+..++|.|.
T Consensus        81 ~~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          81 AGRSESSDPLELVVT   95 (96)
T ss_dssp             TEECCCCCCEEEEEE
T ss_pred             CCccccCCCEEEEEe
Confidence             1 245666777764

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.48  E-value=1.1e-06  Score=46.79  Aligned_cols=82  Identities=11%  Similarity=0.136  Sum_probs=54.8

Q ss_pred             CceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +|.+...|. ..+..|.+++|.|....+   ...+.|+++|........       ...+.|..+...|+|.|.|.....
T Consensus         6 kPsLsa~P~-~~V~~G~~VTL~C~~~~~---~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           6 KPSLSAQPG-PTVLAGENVTLSCSSRSS---YDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CCEEEEESC-SEECTTCEEEEEEEESSC---CSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCEEEEeCC-CcccCCCeEEEEECCCCC---ccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            344444443 357889999999998755   678999988754321111       345677888888999999987643


Q ss_pred             C----CCceeeeEEEEE
Q psy11131        127 D----GDVAQGSAELQL  139 (150)
Q Consensus       127 ~----g~~~~~~~~l~v  139 (150)
                      .    ....+..+.|.|
T Consensus        82 ~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          82 DSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             TEEEEECCCCCCEEEEE
T ss_pred             CCCCCccCCCCCEEEEE
Confidence            2    123456666665

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.46  E-value=9.1e-07  Score=48.39  Aligned_cols=67  Identities=22%  Similarity=0.362  Sum_probs=49.3

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--ccC-------C---------------CcceeeEEEccC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--QIP-------G---------------RTSSTSLVINPV  111 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~~~-------~---------------~~~~~~l~~~~~  111 (150)
                      +...|..+.+.+|+.+.|.|... ..   ...+.|++...  ...       .               ......|.|..+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~---~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~   79 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSP---FSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITAS   79 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSC---CSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCC---ccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEccc
Confidence            34557778889999999999987 55   66789986321  100       0               000467999999


Q ss_pred             CCCCCceEEEEEEeC
Q psy11131        112 GREDRGIYQCIARRS  126 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~  126 (150)
                      ..+|+|.|.|.+...
T Consensus        80 ~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          80 QLSDSASYICVVSDR   94 (114)
T ss_dssp             CGGGCSEEEEEEECS
T ss_pred             ChhhCcccceeeecC
Confidence            999999999999864

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7e-07  Score=48.46  Aligned_cols=75  Identities=16%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             EecCCcEEEEEEec--CCCCCCc--EEEEeecCcccCCCc------c------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPY--LIAWFKDGRQIPGRT------S------STSLVINPVGREDRGIYQCIARRSDGD  129 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~--~~~w~~~~~~~~~~~------~------~~~l~~~~~~~~~~g~y~C~~~~~~g~  129 (150)
                      +.+|+.+.|.|.+.  .|   .+  .+.|++++..+....      .      .+.|.+.....++...|+|.|.+..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P---~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYP---FDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBS---GGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCC---CCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            67899999999998  56   43  689998776542111      0      345666655555555799999987542


Q ss_pred             c------eeeeEEEEEcCcC
Q psy11131        130 V------AQGSAELQLGGTR  143 (150)
Q Consensus       130 ~------~~~~~~l~v~~~p  143 (150)
                      .      ...+..|.|..+|
T Consensus        90 ~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          90 MDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             CTTSCSEEEEEEECCEECCC
T ss_pred             ccccccccceeEEeEEEeCC
Confidence            1      2234456666654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=7.5e-07  Score=49.36  Aligned_cols=68  Identities=18%  Similarity=0.422  Sum_probs=49.0

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC---------C---C----------cc-------
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP---------G---R----------TS-------  102 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~---------~---~----------~~-------  102 (150)
                      |.+...|..+.+.+|+++.|.|... ..   ...+.|++.  +..+.         .   .          ..       
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~---~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~   78 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSV---SQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT   78 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCC---SSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEET
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCcc---CCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCC
Confidence            4566678888899999999999987 55   566888762  22110         0   0          00       


Q ss_pred             --eeeEEEccCCCCCCceEEEEEEe
Q psy11131        103 --STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus       103 --~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                        ...|.|.++..+|+|.|.|.+..
T Consensus        79 ~~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          79 NNKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEeEEEEcccccCCCEEEEeeEeC
Confidence              23699999999999999998763

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.46  E-value=2.6e-07  Score=49.12  Aligned_cols=36  Identities=28%  Similarity=0.448  Sum_probs=30.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~   52 (150)
                      .+|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|.
T Consensus        61 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          61 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             SEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             CEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            689999999999999999999998875 456777763

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.4e-07  Score=49.48  Aligned_cols=36  Identities=28%  Similarity=0.507  Sum_probs=30.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~   52 (150)
                      ..|.|.++..+|+|.|+|.+.|..|.. +..+.|.|.
T Consensus        54 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          54 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             eeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            479999999999999999999988864 556777775

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=9.1e-07  Score=47.89  Aligned_cols=66  Identities=15%  Similarity=0.249  Sum_probs=43.6

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cc---c-------CC--Ccc----------eeeEEEccCCCCCC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQ---I-------PG--RTS----------STSLVINPVGREDR  116 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~---~-------~~--~~~----------~~~l~~~~~~~~~~  116 (150)
                      ..+.+.+|+.+.|.|... .... ...+.|++..  ..   +       ..  ..+          ...|.|.++..+|+
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~-~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSL-YEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTC-CCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEEEcCCCCEEEEEEECCCCCC-CCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            346778999999999865 2100 3466797631  11   0       00  000          45799999999999


Q ss_pred             ceEEEEEEeCCC
Q psy11131        117 GIYQCIARRSDG  128 (150)
Q Consensus       117 g~y~C~~~~~~g  128 (150)
                      |.|.|.+.....
T Consensus        83 G~Y~C~v~~~~~   94 (108)
T d1hkfa_          83 GHYWCRIYRPSD   94 (108)
T ss_dssp             EEEEEEEECTTT
T ss_pred             EEEEEEEecCCC
Confidence            999999885443

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.44  E-value=2.2e-06  Score=45.31  Aligned_cols=73  Identities=12%  Similarity=0.176  Sum_probs=51.7

Q ss_pred             EEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCC---------CcceeeEEEccCCCCCCceEEEEEEeCC----CCc
Q psy11131         64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSD----GDV  130 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~---------~~~~~~l~~~~~~~~~~g~y~C~~~~~~----g~~  130 (150)
                      ..+..|.+++|.|.....   ...+.+++++.....         ....+.+.|..+...|.|.|.|......    ...
T Consensus        11 ~~V~~G~~VTl~C~~~~~---~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~   87 (96)
T d1nkra1          11 PLVKSEETVILQCWSDVM---FEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSA   87 (96)
T ss_dssp             SEEETTCCEEEEEEESSC---CSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCC
T ss_pred             CccCCCCcEEEEECCCCC---CCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcCCCCCcccC
Confidence            347889999999998844   678888887653211         0114679999999999999999886432    234


Q ss_pred             eeeeEEEEE
Q psy11131        131 AQGSAELQL  139 (150)
Q Consensus       131 ~~~~~~l~v  139 (150)
                      .+..+.|.|
T Consensus        88 pSdpLeL~V   96 (96)
T d1nkra1          88 PSDPLDIVI   96 (96)
T ss_dssp             CCCCEEEEE
T ss_pred             CCCCEEEEC
Confidence            566666654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.4e-07  Score=49.44  Aligned_cols=39  Identities=26%  Similarity=0.379  Sum_probs=32.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPY   55 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~   55 (150)
                      ..|.|.+++.+|+|.|.|.+.|..+. .+..+.|+|..+|
T Consensus        49 ~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          49 HNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             ceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence            67999999999999999999997665 3566788888765

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.5e-06  Score=44.03  Aligned_cols=73  Identities=16%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             EEEecCCcEEEEEEec--CCCCCCcEEEEeec-Cc---ccCCCcc------------eeeEEEccCCCCCCceEEEEEEe
Q psy11131         64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKD-GR---QIPGRTS------------STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~-~~---~~~~~~~------------~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      ..+..|+...|.|++.  ..   .|.++|-+- +.   .+.....            ...|.|..+...|.|.|.|.+.-
T Consensus        13 hs~~~G~~f~leCPVkYC~~---RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVH---RPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSS---CCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             eeEecCCceEecCcchhhcC---CCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            4678899999999998  44   789999874 32   2221111            45788899999999999999986


Q ss_pred             CCCCceeeeEEEEE
Q psy11131        126 SDGDVAQGSAELQL  139 (150)
Q Consensus       126 ~~g~~~~~~~~l~v  139 (150)
                      ..+...+.++++.|
T Consensus        90 ~s~vieSHSvti~V  103 (104)
T d1xaua_          90 NSQVINSHSVTIHV  103 (104)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             ChhheecceEEEEe
Confidence            66544445555544

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=2.8e-07  Score=48.53  Aligned_cols=42  Identities=33%  Similarity=0.487  Sum_probs=31.8

Q ss_pred             CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .++.... ++|.|.++...|+|.|.|.+.|..+.......+.|
T Consensus        48 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          48 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV   90 (92)
T ss_dssp             TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             eeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEE
Confidence            3444444 78999999999999999999987666555555554

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.41  E-value=1.3e-07  Score=49.45  Aligned_cols=38  Identities=24%  Similarity=0.381  Sum_probs=32.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTP   54 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~   54 (150)
                      +.|.|.+++.+|+|.|.|.+.|..+.. +..+.|.|++|
T Consensus        49 ~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          49 PNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             CEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             cccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            679999999999999999999987764 45678888764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.1e-07  Score=51.67  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=34.2

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEEE
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQV   51 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v   51 (150)
                      .+|..+.. ++|.|.+++.+|+|.|.|.+.+.. +...+.+.|.|
T Consensus        62 ~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             CSSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             eeEEEEcccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            35777766 899999999999999999998764 44556666665

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.9e-07  Score=48.59  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=27.9

Q ss_pred             CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcc
Q psy11131          9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGE   42 (150)
Q Consensus         9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   42 (150)
                      +.++...++.|.|.++..+|+|.|+|.+.|..+.
T Consensus        50 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          50 NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            3445556689999999999999999999986554

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.38  E-value=2.5e-06  Score=46.54  Aligned_cols=68  Identities=24%  Similarity=0.462  Sum_probs=49.5

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------CC----------------cceeeEEEccC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------GR----------------TSSTSLVINPV  111 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------~~----------------~~~~~l~~~~~  111 (150)
                      +...|..+.+.+|+.+.|.|... ..   ...+.|++..  ....      ..                .....|.|.++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~---~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   79 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSA---IYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAAS   79 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCC---EEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCc---ccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecC
Confidence            34567778889999999999987 55   6678898732  1100      00                00468999999


Q ss_pred             CCCCCceEEEEEEeCC
Q psy11131        112 GREDRGIYQCIARRSD  127 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~~  127 (150)
                      ..+|+|.|.|.+....
T Consensus        80 ~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          80 QPGDSATYLCAVRPTS   95 (113)
T ss_dssp             CGGGCEEEEEEEEESS
T ss_pred             CCCCCcEEeEeEecCC
Confidence            9999999999987544

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=3.4e-06  Score=45.50  Aligned_cols=65  Identities=18%  Similarity=0.330  Sum_probs=46.8

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC----------C--Ccc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP----------G--RTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~----------~--~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+++.|.|... ..   ...+.|++..  ....          .  ..+        ...|.|.++..+
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~---~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~   81 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDI---YSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTE   81 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGG
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCc---ccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccc
Confidence            3567778899999999999887 44   4568898732  1100          0  000        468999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1ospl1          82 DVATYFCQQYW   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCCcEEEeecc
Confidence            99999997653

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.31  E-value=5e-07  Score=48.72  Aligned_cols=40  Identities=25%  Similarity=0.180  Sum_probs=30.4

Q ss_pred             CCCCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEE
Q psy11131          7 LPGPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAE   46 (150)
Q Consensus         7 ~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   46 (150)
                      ..+.+.....  ++|.|.++..+|+|.|+|.+.|..|..+..
T Consensus        49 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          49 PADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             cccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            3444444443  789999999999999999999877765543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=3.3e-06  Score=45.53  Aligned_cols=65  Identities=22%  Similarity=0.413  Sum_probs=46.7

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC----------CC--cc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP----------GR--TS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~----------~~--~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+++.|.|... ..   ...+.|++.  +....          ..  ..        ...|.|.++..+
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~---~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   81 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEI---SGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESE   81 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCC---CCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhccc
Confidence            3456777888999999999987 55   556889863  22210          00  00        458999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1c5cl1          82 DFADYYCLQYA   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCeEEEEecCc
Confidence            99999997653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=3e-06  Score=45.75  Aligned_cols=64  Identities=14%  Similarity=0.352  Sum_probs=46.6

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+++.|.|... ..   ...+.|++..  ....            ...+        ...|.|.++..+
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   81 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENV---GTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQAD   81 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCc---CCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheec
Confidence            3567778899999999999987 54   5568998642  1100            0000        457999999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |++.|.|.+.
T Consensus        82 DSa~YyCa~~   91 (107)
T d1kcvl1          82 DDADYYCGQS   91 (107)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCceEEEEec
Confidence            9999999865

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.4e-06  Score=47.67  Aligned_cols=66  Identities=18%  Similarity=0.328  Sum_probs=45.8

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccCC------------------Ccc--------eeeEEE
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIPG------------------RTS--------STSLVI  108 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~~------------------~~~--------~~~l~~  108 (150)
                      ...|....+.+|+++.|.|... ...  ...+.|++..  .....                  ..+        ...|.|
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~--~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNP--TSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSC--CSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcC--CCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            4456667788999999999976 321  4468898732  11100                  000        346999


Q ss_pred             ccCCCCCCceEEEEEEe
Q psy11131        109 NPVGREDRGIYQCIARR  125 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~  125 (150)
                      .++..+|+|.|.|.+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999999874

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.6e-07  Score=47.81  Aligned_cols=36  Identities=36%  Similarity=0.493  Sum_probs=31.0

Q ss_pred             EEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131         19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus        19 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      +.+.+++++|+|.|.|.+.|..|..+..+.|.|..|
T Consensus        49 ~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          49 GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEECC
Confidence            456678999999999999999999888899988753

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.29  E-value=3.9e-06  Score=45.44  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=47.0

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC-------CC-----cc----------eeeEEEccCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP-------GR-----TS----------STSLVINPVG  112 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~-------~~-----~~----------~~~l~~~~~~  112 (150)
                      ...|..+.+.+|+.+.|.|... ..   ...+.|++..  ....       ..     .+          ...|.|.++.
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~---~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   79 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSA---FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQ   79 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTT---EEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCC
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCC---CcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCC
Confidence            3456778889999999999887 44   5678898642  1110       00     00          3579999999


Q ss_pred             CCCCceEEEEEEe
Q psy11131        113 REDRGIYQCIARR  125 (150)
Q Consensus       113 ~~~~g~y~C~~~~  125 (150)
                      .+|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          80 PGDSATYFCAASA   92 (110)
T ss_dssp             TTSCSEEEECCEE
T ss_pred             CCCceeEeeeecC
Confidence            9999999998763

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.29  E-value=4e-06  Score=45.47  Aligned_cols=63  Identities=22%  Similarity=0.493  Sum_probs=44.7

Q ss_pred             CCcEEEecCCcEEEEEEec--CCCCCCcEEEEeec--CcccC-------CC-------------cceeeEEEccCCCCCC
Q psy11131         61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKD--GRQIP-------GR-------------TSSTSLVINPVGREDR  116 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~--~~~~~-------~~-------------~~~~~l~~~~~~~~~~  116 (150)
                      |.++.+.+|+++.|.|...  ..   ...+.|++.  +....       ..             .....|.|.++..+|+
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~---~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   81 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISG---NEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDT   81 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCT---TEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEEcCCCC---CCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCc
Confidence            4567889999999999875  33   456889863  22110       00             0046799999999999


Q ss_pred             ceEEEEEEeC
Q psy11131        117 GIYQCIARRS  126 (150)
Q Consensus       117 g~y~C~~~~~  126 (150)
                      |.|.|.+...
T Consensus        82 a~YyCa~~~~   91 (110)
T d2esvd1          82 AVYYCIVVRS   91 (110)
T ss_dssp             EEEEEEEEES
T ss_pred             eEEEEEEeCC
Confidence            9999998643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.29  E-value=5.3e-06  Score=45.33  Aligned_cols=67  Identities=15%  Similarity=0.266  Sum_probs=48.3

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC----------C--Ccc----------eeeEEEccC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP----------G--RTS----------STSLVINPV  111 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~----------~--~~~----------~~~l~~~~~  111 (150)
                      +...+..+.+.+|+.+.|.|... ..   ...+.|++..  ....          .  ..+          ...|.|.++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~---~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTY---SPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSA   80 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSS---SCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCC---cCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccc
Confidence            34567778899999999999987 55   5678897632  1100          0  000          356999999


Q ss_pred             CCCCCceEEEEEEeC
Q psy11131        112 GREDRGIYQCIARRS  126 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~  126 (150)
                      ..+|+|.|.|.+...
T Consensus        81 ~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          81 QLSDSALYYCALFLA   95 (115)
T ss_dssp             CGGGCEEEEEEEEEC
T ss_pred             ccccCccceEEEEcC
Confidence            999999999988754

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.29  E-value=5.1e-06  Score=44.80  Aligned_cols=63  Identities=25%  Similarity=0.437  Sum_probs=45.9

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~  115 (150)
                      ..|..+.+.+|+.+.|.|... ..   ...+.|++..  ..+.            ...+        ...|.|.++..+|
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSI---GNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CcCCeEEECCCCCEEEEEEecCCC---CcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence            456777889999999999887 54   5568898642  1110            0000        4689999999999


Q ss_pred             CceEEEEEE
Q psy11131        116 RGIYQCIAR  124 (150)
Q Consensus       116 ~g~y~C~~~  124 (150)
                      +|.|.|.+.
T Consensus        83 sa~YyCa~~   91 (107)
T d1j1pl_          83 FGMYFCQQA   91 (107)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEEEcC
Confidence            999999765

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1e-05  Score=42.83  Aligned_cols=68  Identities=22%  Similarity=0.308  Sum_probs=45.9

Q ss_pred             ceEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCc----------ceeeEEEccCCCCCCceEEEEEE
Q psy11131         55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT----------SSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~----------~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      |.+...|.. .+..|.+++|.|.....   ...+.+++++.......          ....+.|..+...|.|.|.|...
T Consensus         5 PsLsa~P~~-~v~~G~~VTL~C~~~~~---~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2           5 PTLSAQPSP-VVNSGGNVTLQCDSQVA---FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECSSC---CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred             CEEEeeCCC-ccCCCCcEEEEeCCCCC---CCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence            444444433 47899999999998744   66788877665422110          14679999999999999999876


Q ss_pred             eC
Q psy11131        125 RS  126 (150)
Q Consensus       125 ~~  126 (150)
                      ..
T Consensus        81 ~~   82 (98)
T d1ugna2          81 DS   82 (98)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.28  E-value=3.9e-07  Score=47.66  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~   53 (150)
                      ..|.|.+++.+|+|.|.|.+.|..+.. +..+.|+|++
T Consensus        51 ~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          51 SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            689999999999999999999877653 4567777764

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.28  E-value=4.8e-06  Score=44.90  Aligned_cols=65  Identities=18%  Similarity=0.379  Sum_probs=46.8

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc----------CC--Ccc--------eeeEEEccCCC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI----------PG--RTS--------STSLVINPVGR  113 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~----------~~--~~~--------~~~l~~~~~~~  113 (150)
                      +...|..+.+.+|+.+.|.|... ..   ...+.|++..  ...          ..  ..+        ...|.|.++..
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   80 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGV---TSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP   80 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCC---CccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEecccee
Confidence            34567778889999999999987 54   5678887632  111          00  000        45799999999


Q ss_pred             CCCceEEEEEE
Q psy11131        114 EDRGIYQCIAR  124 (150)
Q Consensus       114 ~~~g~y~C~~~  124 (150)
                      +|++.|.|...
T Consensus        81 ~DsA~YyCa~~   91 (107)
T d1tjgl1          81 EDFATYYCQQL   91 (107)
T ss_dssp             GGCSEEEEEEC
T ss_pred             CcCceEEEEEC
Confidence            99999999755

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=3.2e-06  Score=46.17  Aligned_cols=67  Identities=24%  Similarity=0.395  Sum_probs=46.6

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc-------------CCCcc----------eeeEEEccC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI-------------PGRTS----------STSLVINPV  111 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~-------------~~~~~----------~~~l~~~~~  111 (150)
                      ...|..+.+.+|+.+.|.|... ...  ...+.|++.  +...             ....+          ...|.|.++
T Consensus         3 tqsP~~l~v~~G~~vtl~C~~~~~~~--~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   80 (114)
T d3bp5a1           3 TFYPAWLTVSEGANATFTCSLSNWSE--DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT   80 (114)
T ss_dssp             EEESSEEEEETTCCEEEEEEESCCCT--TCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSC
T ss_pred             eECCCeEEECCCCCEEEEEEECCCCC--cceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECcc
Confidence            3457778899999999999876 321  456889863  2110             00000          356999999


Q ss_pred             CCCCCceEEEEEEeC
Q psy11131        112 GREDRGIYQCIARRS  126 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~  126 (150)
                      ..+|+|.|.|.+...
T Consensus        81 ~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          81 RRNDSGIYLCGAISL   95 (114)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             CcCCCeEEEEEEEeC
Confidence            999999999988743

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.1e-06  Score=46.09  Aligned_cols=40  Identities=28%  Similarity=0.268  Sum_probs=29.7

Q ss_pred             CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .+..+..  ++|.|.+++++|+|.|.|.+.+..+.  ..+.|+|
T Consensus        51 ~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t--~~~~l~V   92 (93)
T d1ccza1          51 NRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDT--MKFFLYV   92 (93)
T ss_dssp             TSEEECTTTCCEEECSCCGGGCEEEEEECTTCCSC--EEEEEEE
T ss_pred             ceEEEcCCeeEEEEEecChhhCEEEEEEEECCCcE--EEEEEEE
Confidence            3444433  68999999999999999999886543  3455555

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.27  E-value=7.5e-06  Score=44.11  Aligned_cols=64  Identities=22%  Similarity=0.352  Sum_probs=45.8

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+++.|.|... ..   ...+.|++..  ....            ...+        ...|.|.++..+
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~   81 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNV---GTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSE   81 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCC---CCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhee
Confidence            3556778889999999999876 44   4568898632  1100            0000        467999999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |++.|.|-+.
T Consensus        82 DsA~YyCa~~   91 (107)
T d1mexl1          82 DLAEYFCQQY   91 (107)
T ss_dssp             GCSEEEEEEC
T ss_pred             cceeEEEeEC
Confidence            9999999765

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.27  E-value=4e-06  Score=45.72  Aligned_cols=68  Identities=18%  Similarity=0.288  Sum_probs=46.9

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeec--CcccC-------CCcc----------------eeeEEEc
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKD--GRQIP-------GRTS----------------STSLVIN  109 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~--~~~~~-------~~~~----------------~~~l~~~  109 (150)
                      +...+..+.+.+|+++.|.|...  ..   ...+.|++.  +....       ....                ...|.|.
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~---~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   79 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDT---TYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTIT   79 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCS---SCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEES
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCc---CccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeec
Confidence            34556777899999999999865  33   456789763  21100       0000                3579999


Q ss_pred             cCCCCCCceEEEEEEeCC
Q psy11131        110 PVGREDRGIYQCIARRSD  127 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~~~  127 (150)
                      ++..+|+|.|.|.+....
T Consensus        80 ~~~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          80 ASQVVDSAVYFCALSGFY   97 (114)
T ss_dssp             SCCGGGCEEEEEEEECSB
T ss_pred             ccccccCCCceEeCCCCC
Confidence            999999999999876543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.26  E-value=4.5e-06  Score=45.46  Aligned_cols=66  Identities=27%  Similarity=0.372  Sum_probs=47.3

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec---CCCCCCcEEEEeec--Ccc----cCCCcc----------eeeEEEccCCCCCCc
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT---PYDSGPYLIAWFKD--GRQ----IPGRTS----------STSLVINPVGREDRG  117 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~---~p~~~~~~~~w~~~--~~~----~~~~~~----------~~~l~~~~~~~~~~g  117 (150)
                      +...|..+...+|+.+.|.|...   ..   ...+.|++.  +..    +....+          ...|.|.++..+|+|
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~---~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   79 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFE---LKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSG   79 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSC---CCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCccc---CCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcc
Confidence            34567778889999999999875   23   467889863  211    111111          357999999999999


Q ss_pred             eEEEEEEe
Q psy11131        118 IYQCIARR  125 (150)
Q Consensus       118 ~y~C~~~~  125 (150)
                      .|.|.+..
T Consensus        80 ~YyCa~~~   87 (113)
T d1vesa_          80 TYKCQAFY   87 (113)
T ss_dssp             EEEEEEEE
T ss_pred             eEeeeeec
Confidence            99999864

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.24  E-value=3.7e-06  Score=45.96  Aligned_cols=65  Identities=18%  Similarity=0.341  Sum_probs=46.2

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC-------CCc----------------ceeeEEEccC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP-------GRT----------------SSTSLVINPV  111 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~-------~~~----------------~~~~l~~~~~  111 (150)
                      ...+..+.+.+|+++.|.|... ..   ...+.|++.  +....       ...                ....|.|.++
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~---~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSA---TPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASV   80 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSC
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCC---CCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccc
Confidence            3456668889999999999977 54   566788762  21100       000                0457999999


Q ss_pred             CCCCCceEEEEEEe
Q psy11131        112 GREDRGIYQCIARR  125 (150)
Q Consensus       112 ~~~~~g~y~C~~~~  125 (150)
                      ..+|+|.|.|.+..
T Consensus        81 ~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          81 HWSDSAVYFCAVSG   94 (115)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccccceecccccC
Confidence            99999999998763

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=2.6e-06  Score=45.91  Aligned_cols=64  Identities=20%  Similarity=0.361  Sum_probs=45.3

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC------------CCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+.+.|.|... ..   ...+.|++.  +....            ...+        ...|.|.++..+
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~---~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~   81 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDI---DDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSE   81 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCC---CccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccc
Confidence            3456677788999999999886 44   456889863  22110            0000        357999999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |+|.|.|.+.
T Consensus        82 Dsa~YyCa~~   91 (106)
T d1i8ka_          82 DVGDYYCLQS   91 (106)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCEEEeEecC
Confidence            9999999765

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=8.8e-06  Score=44.72  Aligned_cols=66  Identities=24%  Similarity=0.438  Sum_probs=44.4

Q ss_pred             CCcEEEecCCcEEEEEEec-CC----CCCCcEEEEeecCccc---------------CC--Ccc----------eeeEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PY----DSGPYLIAWFKDGRQI---------------PG--RTS----------STSLVI  108 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p----~~~~~~~~w~~~~~~~---------------~~--~~~----------~~~l~~  108 (150)
                      +..+.+.+|+.+.|.|... ..    ......+.|++....-               ..  ..+          ...|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            5667889999999999875 21    1113467787642210               00  000          457999


Q ss_pred             ccCCCCCCceEEEEEEeC
Q psy11131        109 NPVGREDRGIYQCIARRS  126 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~~  126 (150)
                      .++..+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999753

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.22  E-value=1.3e-05  Score=43.25  Aligned_cols=65  Identities=17%  Similarity=0.413  Sum_probs=45.7

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc----------CC--Ccc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI----------PG--RTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~----------~~--~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+.+.|.|... ..   ...+.|++..  ...          ..  ...        ...|.|.++..+
T Consensus         5 tQ~P~~l~~~~G~svtL~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   81 (108)
T d1jhll_           5 TQSPSYLVASPGETITINCRASKSI---SKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPE   81 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTT
T ss_pred             EccCCeEEecCCCCEEEEEEccCCc---CCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEec
Confidence            3456677888999999999987 54   5568887632  110          00  000        357999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |++.|.|....
T Consensus        82 Dsa~YyCA~~~   92 (108)
T d1jhll_          82 DFAMYICQQHN   92 (108)
T ss_dssp             CCSEEEEEECS
T ss_pred             cceEEEEeeCC
Confidence            99999997654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6.4e-07  Score=48.14  Aligned_cols=36  Identities=33%  Similarity=0.500  Sum_probs=30.5

Q ss_pred             eEEEcCCCCCCCeEEEEEeccCCccee-EEEEEEEec
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVST   53 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~   53 (150)
                      .|.|.++..+|+|.|+|.+.|..|... ..+.|.|.+
T Consensus        66 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          66 ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEEE
Confidence            499999999999999999999988754 467777764

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.22  E-value=8.7e-06  Score=43.84  Aligned_cols=65  Identities=22%  Similarity=0.469  Sum_probs=45.9

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC----------C--Ccc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP----------G--RTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~----------~--~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+++.|.|... ..   ...+.|++..  ....          .  ..+        ...|.|.++..+
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~~---~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~   81 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQDI---NSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYE   81 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCCC---CCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCc
Confidence            3456677888999999999887 55   5567887632  1100          0  000        468999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |++.|.|....
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1d5il1          82 DMGIYYCLQYD   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCEEEEeeecc
Confidence            99999997653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.22  E-value=3.6e-06  Score=46.07  Aligned_cols=67  Identities=21%  Similarity=0.311  Sum_probs=47.1

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeec--CcccC---------------CCcc----------eeeEE
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKD--GRQIP---------------GRTS----------STSLV  107 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~--~~~~~---------------~~~~----------~~~l~  107 (150)
                      +...|..+.+.+|+.+.|.|...  ..   ...+.|++.  +....               ...+          ...|.
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~---~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   79 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYS---NPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLV   79 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSS---SCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCcc---CCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeee
Confidence            44567778899999999999875  34   567888752  21100               0000          24789


Q ss_pred             EccCCCCCCceEEEEEEeC
Q psy11131        108 INPVGREDRGIYQCIARRS  126 (150)
Q Consensus       108 ~~~~~~~~~g~y~C~~~~~  126 (150)
                      |.++..+|+|.|.|.+...
T Consensus        80 I~~~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          80 ISPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             ESSCCGGGCEEEEEEEECT
T ss_pred             ecCccccccccceeeEecC
Confidence            9999999999999988754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.5e-06  Score=45.55  Aligned_cols=63  Identities=16%  Similarity=0.361  Sum_probs=39.2

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEE--eecCccc-----------C-CCcc----------eeeEEEccCCCCCCce
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAW--FKDGRQI-----------P-GRTS----------STSLVINPVGREDRGI  118 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w--~~~~~~~-----------~-~~~~----------~~~l~~~~~~~~~~g~  118 (150)
                      +.+..|+++.|.|... .+......+.|  .+.....           . ....          ...|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            4567899999999886 32111222333  3322110           0 0000          3579999999999999


Q ss_pred             EEEEEEeC
Q psy11131        119 YQCIARRS  126 (150)
Q Consensus       119 y~C~~~~~  126 (150)
                      |.|.+...
T Consensus        84 Y~C~V~~~   91 (110)
T d1ncna_          84 YQCIIHHK   91 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99999644

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=5e-07  Score=49.03  Aligned_cols=37  Identities=32%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCccee--EEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEAT--AEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~   53 (150)
                      +.|.|.+++.+|+|.|+|.+.|..|...  ..++|.|.+
T Consensus        67 ~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          67 GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             CCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEEe
Confidence            6899999999999999999999888754  356666654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1e-06  Score=48.68  Aligned_cols=36  Identities=25%  Similarity=0.478  Sum_probs=31.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      .+|.|.+++.+|+|.|.|.+.+..+.....+.|+|.
T Consensus        88 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          88 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            479999999999999999999887777777777764

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=3.8e-06  Score=45.24  Aligned_cols=64  Identities=23%  Similarity=0.447  Sum_probs=45.9

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+.+.|.|... ..   ...+.|++..  ....            ...+        ...|.|.++..+
T Consensus         4 tQsP~~l~~~~G~svtl~C~~s~~~---~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~   80 (106)
T d1a0ql1           4 TQSPSSLSASLGGKVTITCKASQDI---KKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPE   80 (106)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCC---CCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhccc
Confidence            3456777889999999999887 55   4568898632  1100            0000        457999999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |++.|.|.+.
T Consensus        81 DsA~YyCa~~   90 (106)
T d1a0ql1          81 DIATYYCLQY   90 (106)
T ss_dssp             GCSEEEEEEC
T ss_pred             CCEeEEEEEe
Confidence            9999999865

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=5.3e-06  Score=44.89  Aligned_cols=64  Identities=23%  Similarity=0.423  Sum_probs=45.9

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cc---c-------CC--Ccc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQ---I-------PG--RTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~---~-------~~--~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+.+.|.|... ..   ...+.|++..  ..   +       ..  ...        ...|.|.++..+
T Consensus         5 tQsP~~l~~~~G~svtL~C~~s~~~---~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   81 (109)
T d1mqkl_           5 TQTPVSLSASVGETVTITCRASENI---YSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE   81 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ECcCCEEEECCCCCEEEEEEeCCCc---CcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEcccccc
Confidence            3456777888999999999987 44   4568898732  11   0       00  000        467999999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |+|.|.|.+.
T Consensus        82 DSa~YyCA~~   91 (109)
T d1mqkl_          82 DFGSYYCQHH   91 (109)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCeeEEEeee
Confidence            9999999865

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.3e-06  Score=45.92  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=22.7

Q ss_pred             eCCeEEEcCCCCCCCeEEEEEeccCC
Q psy11131         15 LGPILAIEGVTAEDSGTYRCSSSNIG   40 (150)
Q Consensus        15 ~~~~l~i~~~~~~d~G~Y~C~~~~~~   40 (150)
                      .+++|.|.++..+|+|.|+|.+.|..
T Consensus        58 ~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          58 MGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             ESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCEEEECCCChhcCEEEEEEECCcc
Confidence            34889999999999999999998753

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=5.5e-06  Score=45.25  Aligned_cols=66  Identities=17%  Similarity=0.279  Sum_probs=47.6

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC-------CC------cc----------eeeEEEccC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP-------GR------TS----------STSLVINPV  111 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~-------~~------~~----------~~~l~~~~~  111 (150)
                      ...+..+.+.+|+.+.|.|... ..   ...+.|++.  +....       ..      ..          ...|.|.++
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~---~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSV---PPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSA   80 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSC
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCC---ceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccc
Confidence            4456678899999999999987 54   567899863  21110       00      00          347999999


Q ss_pred             CCCCCceEEEEEEeC
Q psy11131        112 GREDRGIYQCIARRS  126 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~  126 (150)
                      ..+|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          81 HMSDAAEYFCAVSES   95 (115)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             cccCCccceeeecCC
Confidence            999999999998753

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.18  E-value=2e-06  Score=45.16  Aligned_cols=28  Identities=29%  Similarity=0.432  Sum_probs=25.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCccee
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEAT   44 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   44 (150)
                      ++|.|.++..+|+|.|+|.+.|..|...
T Consensus        58 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          58 GSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            7899999999999999999999988643

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.18  E-value=1.2e-05  Score=43.57  Aligned_cols=66  Identities=27%  Similarity=0.394  Sum_probs=47.2

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC-------C---------------CcceeeEEEccC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP-------G---------------RTSSTSLVINPV  111 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~-------~---------------~~~~~~l~~~~~  111 (150)
                      +...|..+.+.+|+.+.|.|... ..   ...+.|++.  +....       .               ......|.|..+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   79 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSM---FDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPS   79 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTT---CCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCC---CCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCC
Confidence            34567778889999999999876 44   556788763  21110       0               000468999999


Q ss_pred             CCCCCceEEEEEEe
Q psy11131        112 GREDRGIYQCIARR  125 (150)
Q Consensus       112 ~~~~~g~y~C~~~~  125 (150)
                      ..+|+|.|.|.+..
T Consensus        80 ~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          80 QPGDSAVYFCAAME   93 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             cccccEEEEeeccC
Confidence            99999999998773

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.17  E-value=1.4e-05  Score=42.92  Aligned_cols=64  Identities=17%  Similarity=0.386  Sum_probs=45.7

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC----------C--Ccc--------eeeEEEccCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP----------G--RTS--------STSLVINPVGRED  115 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~----------~--~~~--------~~~l~~~~~~~~~  115 (150)
                      ..|..+.+.+|+.+.|.|... ..   ...+.|++..  ....          .  ..+        ...|.|.++..+|
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~---~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   81 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSI---ETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDD   81 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCC---CCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccC
Confidence            456778889999999999887 44   4557887642  1100          0  000        4579999999999


Q ss_pred             CceEEEEEEe
Q psy11131        116 RGIYQCIARR  125 (150)
Q Consensus       116 ~g~y~C~~~~  125 (150)
                      ++.|.|.+..
T Consensus        82 sa~YyCa~~~   91 (106)
T d1op3k1          82 FATYHCQHYA   91 (106)
T ss_dssp             CSEEEEEEEC
T ss_pred             CCcEeeeeCC
Confidence            9999998663

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.17  E-value=6.2e-06  Score=44.82  Aligned_cols=68  Identities=25%  Similarity=0.385  Sum_probs=46.8

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc----cCCCcc----------eeeEEEccCCCCCCceEE
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ----IPGRTS----------STSLVINPVGREDRGIYQ  120 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~----~~~~~~----------~~~l~~~~~~~~~~g~y~  120 (150)
                      ...|..+...+|+.+.|.|... .. .....+.|++.  +..    +....+          ...|.|.++..+|+|.|.
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s-~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDAS-YALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCS-SCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCc-ccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            3456677888999999999875 21 00567889863  211    111111          457999999999999999


Q ss_pred             EEEEeC
Q psy11131        121 CIARRS  126 (150)
Q Consensus       121 C~~~~~  126 (150)
                      |.+...
T Consensus        82 CA~~~~   87 (112)
T d1sq2n_          82 CGLGVA   87 (112)
T ss_dssp             EEECBT
T ss_pred             EEEecC
Confidence            987744

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.16  E-value=6.1e-07  Score=46.87  Aligned_cols=45  Identities=16%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131          5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus         5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      ++.++.++.+..    ..|.|.++..+|+|.|.|.+.|.    ...+.|.|.+
T Consensus        40 ~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~~sa~l~V~e   88 (89)
T d1tiua_          40 PLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA----KSAANLKVKE   88 (89)
T ss_dssp             CCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC----BCCEEEEEEC
T ss_pred             ecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce----EEEEEEEEEE
Confidence            455566666644    57999999999999999998764    3345666653

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.8e-06  Score=46.40  Aligned_cols=65  Identities=20%  Similarity=0.421  Sum_probs=44.1

Q ss_pred             EEEecCCcEEEEEEec-CCCC-CCcEEEEeecCcccCC---C----------------cceeeEEEccCCCCCCceEEEE
Q psy11131         64 LSVHLDGSANFQCEIT-PYDS-GPYLIAWFKDGRQIPG---R----------------TSSTSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~-~~~~~~w~~~~~~~~~---~----------------~~~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +....|+.+.|.|... .... ....+.|.+++..+..   .                ....+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            4678899999999765 2200 0346777665533200   0                0035799999999999999999


Q ss_pred             EEeCCC
Q psy11131        123 ARRSDG  128 (150)
Q Consensus       123 ~~~~~g  128 (150)
                      +.+..+
T Consensus        84 V~~~~~   89 (105)
T d1dr9a1          84 VLKYEK   89 (105)
T ss_dssp             EEECCT
T ss_pred             EEeCCC
Confidence            986544

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=8.1e-06  Score=44.52  Aligned_cols=67  Identities=22%  Similarity=0.433  Sum_probs=46.9

Q ss_pred             EeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC--ccc---------CCCc----c----------eeeEEEcc
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG--RQI---------PGRT----S----------STSLVINP  110 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~--~~~---------~~~~----~----------~~~l~~~~  110 (150)
                      ...+..+.+.+|+++.|.|...  ..   ...+.|++..  ..+         ....    .          ...|.|.+
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~---~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   79 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDS---SYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITA   79 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCS---SCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECS
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCC---CCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECC
Confidence            3456778899999999999875  33   4568898632  110         0000    0          35699999


Q ss_pred             CCCCCCceEEEEEEeCC
Q psy11131        111 VGREDRGIYQCIARRSD  127 (150)
Q Consensus       111 ~~~~~~g~y~C~~~~~~  127 (150)
                      +..+|+|.|.|.+....
T Consensus        80 ~~~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          80 TQIEDSAVYFCAMRGDY   96 (115)
T ss_dssp             CCGGGCEEEEEEEECCC
T ss_pred             CCccccccccceeecCC
Confidence            99999999999987543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.6e-06  Score=44.28  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=26.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..|.|.++...|+|.|+|.+.|.    ...+.|.|.
T Consensus        62 ~~L~I~~~~~~D~G~Y~c~a~n~----~~s~~l~V~   93 (94)
T d1pd6a_          62 RTLTISQCSLADDAAYQCVVGGE----KCSTELFVK   93 (94)
T ss_dssp             EEEEECSCSSSSCEEEEEEETTE----EECCEEEEE
T ss_pred             EEeecCCCCceecEEEEEEEeeE----EEEEEEEEE
Confidence            57999999999999999999763    445566664

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.13  E-value=1.2e-05  Score=43.71  Aligned_cols=67  Identities=27%  Similarity=0.514  Sum_probs=46.7

Q ss_pred             EeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecC--cccC------C---------------CcceeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDG--RQIP------G---------------RTSSTSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~--~~~~------~---------------~~~~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+.+.|.|.....   ...+.|++..  ..+.      .               ......|.|.++..+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTT---MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC---CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             EECCCEEEEcCCCCEEEEEEEecC---CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence            445677888999999999987632   3467897632  1100      0               000457999999999


Q ss_pred             CCceEEEEEEeCC
Q psy11131        115 DRGIYQCIARRSD  127 (150)
Q Consensus       115 ~~g~y~C~~~~~~  127 (150)
                      |+|.|.|.+....
T Consensus        82 Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          82 DSGTYFCAAEASS   94 (113)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             HCEEEEEEecCCC
Confidence            9999999987543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.13  E-value=1.3e-05  Score=43.64  Aligned_cols=64  Identities=23%  Similarity=0.402  Sum_probs=44.6

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC-----ccc------------------CCCc---------ceeeE
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG-----RQI------------------PGRT---------SSTSL  106 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~-----~~~------------------~~~~---------~~~~l  106 (150)
                      .|....+.+|+++.|.|... ...  ...+.|++..     ..+                  ....         ....|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~--~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISK--LTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCC--SSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCC--CCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            46667788999999999976 321  5678897531     100                  0000         03579


Q ss_pred             EEccCCCCCCceEEEEEEe
Q psy11131        107 VINPVGREDRGIYQCIARR  125 (150)
Q Consensus       107 ~~~~~~~~~~g~y~C~~~~  125 (150)
                      .|.++..+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998763

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.12  E-value=1.8e-05  Score=42.68  Aligned_cols=65  Identities=15%  Similarity=0.364  Sum_probs=45.7

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc----------C--CCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI----------P--GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~----------~--~~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+.+.|.|... ..   ...+.|++..  ...          .  ....        ...|.|..+..+
T Consensus         7 tQsP~~l~~~~G~svtL~C~~s~~~---~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~   83 (109)
T d1bwwa_           7 TQSPSSLSASVGDRVTITCQASQDI---IKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPE   83 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EeeCCEEEECCCCCEEEEEEecCCC---CCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeC
Confidence            3456777889999999999987 44   4557887632  110          0  0000        357999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |++.|.|.+..
T Consensus        84 Dsa~YyCA~~~   94 (109)
T d1bwwa_          84 DIATYYCQQYQ   94 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCceEEEeecC
Confidence            99999998653

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.4e-06  Score=43.98  Aligned_cols=33  Identities=30%  Similarity=0.453  Sum_probs=27.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      ..|.|.++..+|+|.|+|.+.|.    ...+.|+|..
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~a~n~----~~~a~l~V~~   89 (90)
T d1x44a1          57 HILIIEGATKADAAEYSVMTTGG----QSSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEECTTTCSEEEEEETTE----EEEEEEEEEC
T ss_pred             cEEEECccccccCEEEEEEEecc----eEEEEEEEEE
Confidence            57999999999999999999773    4566777753

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.11  E-value=7.9e-06  Score=43.70  Aligned_cols=62  Identities=26%  Similarity=0.404  Sum_probs=43.6

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------C------Ccc--------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------G------RTS--------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------~------~~~--------~~~l~~~~~~~~~~g  117 (150)
                      |..+.+.+|+.+.|.|... ..   ...+.|++..  ....      .      ...        ...|.|.++..+|++
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~---~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   81 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALP---NQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEA   81 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGG---GSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEeCCCC---CCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCc
Confidence            3467788999999999876 44   4567887632  1110      0      000        468999999999999


Q ss_pred             eEEEEEEe
Q psy11131        118 IYQCIARR  125 (150)
Q Consensus       118 ~y~C~~~~  125 (150)
                      .|.|.+..
T Consensus        82 ~YyCA~~~   89 (103)
T d8faba1          82 DYYCQAWD   89 (103)
T ss_dssp             EEEEEEEE
T ss_pred             eEEeeecC
Confidence            99998764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=8.6e-06  Score=43.80  Aligned_cols=61  Identities=25%  Similarity=0.516  Sum_probs=43.7

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~~g  117 (150)
                      |..+.+.+|+.+.|.|... ..   ...+.|++..  ....            ....        ...|.|.++..+|++
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESV---TSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA   83 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEeCCCC---CccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCC
Confidence            3467888999999999987 54   5668898642  1100            0000        468999999999999


Q ss_pred             eEEEEEE
Q psy11131        118 IYQCIAR  124 (150)
Q Consensus       118 ~y~C~~~  124 (150)
                      .|.|...
T Consensus        84 ~YyCa~~   90 (106)
T d1lk3l1          84 IYFCQQS   90 (106)
T ss_dssp             EEEEEEC
T ss_pred             Ccccccc
Confidence            9999654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.5e-07  Score=49.12  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL   49 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   49 (150)
                      +.|.|.++..+|+|.|+|.+.|..|....+..+
T Consensus        66 ~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v   98 (104)
T d1nbqa2          66 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAV   98 (104)
T ss_dssp             CCEEESSCCGGGCCCEEEEEECSSSCCEECCCB
T ss_pred             cceEECCCCcccCcEEEEEEEECCCceEEEEEE
Confidence            679999999999999999999998876554333

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.10  E-value=4.6e-05  Score=41.40  Aligned_cols=81  Identities=23%  Similarity=0.345  Sum_probs=50.2

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc--c----------CC--Ccc--------eeeEEEccCCCCCCce
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ--I----------PG--RTS--------STSLVINPVGREDRGI  118 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~--~----------~~--~~~--------~~~l~~~~~~~~~~g~  118 (150)
                      ..+.+.+|+++.|.|... .. .....+.|++....  .          ..  ..+        ...|.|.++..+|++.
T Consensus         8 ps~~v~~G~svtL~C~~s~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATD-IGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTT-TTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcEEeCCCCCEEEEEEECCcc-ccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence            357788999999999875 21 00456789864211  0          00  000        4689999999999999


Q ss_pred             EEEEEEeCCCCce--eeeEEEEEcCcC
Q psy11131        119 YQCIARRSDGDVA--QGSAELQLGGTR  143 (150)
Q Consensus       119 y~C~~~~~~g~~~--~~~~~l~v~~~p  143 (150)
                      |.|..........  ..=-.|.|.+.|
T Consensus        87 YyCA~~~~~~~~~~FG~GT~LtVlg~p  113 (114)
T d2rhea_          87 YYCAAWNDSLDEPGFGGGTKLTVLGQP  113 (114)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEECSCC
T ss_pred             EEEeecCCCCCCCEECCCeEEEECCCc
Confidence            9999874322110  011256666655

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.10  E-value=1e-05  Score=43.60  Aligned_cols=63  Identities=19%  Similarity=0.333  Sum_probs=44.9

Q ss_pred             eCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ..|..+.+.+|+.+.|.|... . .   ...+.|++..  ....            ...+        ...|.|.++..+
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~   82 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPE   82 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCG---GGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCC---CccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheec
Confidence            456777889999999999875 3 3   4567887642  2100            0000        357999999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |+|.|.|.+.
T Consensus        83 Dsa~YyCa~~   92 (108)
T d2fx7l1          83 DFAVYYCQQY   92 (108)
T ss_dssp             GCSEEEEEEC
T ss_pred             ccEEEeeecC
Confidence            9999999865

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=6.3e-06  Score=45.10  Aligned_cols=36  Identities=28%  Similarity=0.415  Sum_probs=26.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc--ceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~   52 (150)
                      .+|.|.+++.+|+|.|.|.+.+..+  .....+.|.|.
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            5799999999999999999887432  34455667664

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=2.5e-05  Score=42.32  Aligned_cols=67  Identities=19%  Similarity=0.227  Sum_probs=43.8

Q ss_pred             CCCcEEEecCCcEEEEEEec-CC---CCCCcEEEEeecCccc-------------C--CCcc----------eeeEEEcc
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PY---DSGPYLIAWFKDGRQI-------------P--GRTS----------STSLVINP  110 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p---~~~~~~~~w~~~~~~~-------------~--~~~~----------~~~l~~~~  110 (150)
                      .|..+.+.+|+.+.|.|... ..   ......+.|++.....             .  ...+          ...|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            35667889999999999875 21   1112345565532110             0  0000          45799999


Q ss_pred             CCCCCCceEEEEEEeC
Q psy11131        111 VGREDRGIYQCIARRS  126 (150)
Q Consensus       111 ~~~~~~g~y~C~~~~~  126 (150)
                      +..+|+|.|.|.+...
T Consensus        86 v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             CChhHCEEEEEEEEeC
Confidence            9999999999999754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.03  E-value=2.3e-05  Score=42.33  Aligned_cols=65  Identities=15%  Similarity=0.369  Sum_probs=45.5

Q ss_pred             EeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeec--Cccc-------------CC--Ccc---------eeeEEEccC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKD--GRQI-------------PG--RTS---------STSLVINPV  111 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~--~~~~-------------~~--~~~---------~~~l~~~~~  111 (150)
                      ...|....+.+|+++.|.|.....   ...+.|++.  +...             ..  ...         ...|.|.++
T Consensus         5 ~Q~P~~~~~~~G~~vtl~C~~s~~---~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           5 TQSPRNKVAVTGEKVTLSCQQTNN---HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSC---CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             EEeCCeEEEcCCCCEEEEEEECCC---cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            445667778999999999986533   456889873  2110             00  000         457889999


Q ss_pred             CCCCCceEEEEEEe
Q psy11131        112 GREDRGIYQCIARR  125 (150)
Q Consensus       112 ~~~~~g~y~C~~~~  125 (150)
                      ..+|+|.|.|-+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TPSQTSVYFCASGG   95 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHhhCEEEEEeeCC
Confidence            99999999998764

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.5e-07  Score=50.68  Aligned_cols=38  Identities=26%  Similarity=0.419  Sum_probs=33.9

Q ss_pred             CeEEEcCCCCCC-CeEEEEEeccCCcceeEEEEEEEecC
Q psy11131         17 PILAIEGVTAED-SGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus        17 ~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      ..|.|.++...| +|.|+|.+.|..|..+..+.|.|...
T Consensus        69 s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          69 STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             EEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             EEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEECC
Confidence            359999999999 69999999999999999999888754

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=2.5e-05  Score=42.72  Aligned_cols=66  Identities=18%  Similarity=0.422  Sum_probs=46.6

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC--------------C---Ccc---------eeeEEE
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP--------------G---RTS---------STSLVI  108 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~--------------~---~~~---------~~~l~~  108 (150)
                      ...|....+.+|+.+.|.|... ..   ...+.|++.  +..+.              .   ..+         ...|.|
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i   81 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDTN---IHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTV   81 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSSC---CSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEE
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCCc---ccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccc
Confidence            3456667788999999999976 54   567889763  21100              0   000         246999


Q ss_pred             ccCCCCCCceEEEEEEeC
Q psy11131        109 NPVGREDRGIYQCIARRS  126 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~~  126 (150)
                      .++..+|+|.|.|.+...
T Consensus        82 ~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          82 TSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CSCCGGGCEEEEEEEECS
T ss_pred             cccccccCceEEEEEecC
Confidence            999999999999998743

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.01  E-value=1.6e-05  Score=41.68  Aligned_cols=55  Identities=16%  Similarity=0.331  Sum_probs=38.9

Q ss_pred             CCcEEEEEEec-CCCCCCcEEEEeecC--ccc------CCC---------------cceeeEEEccCCCCCCceEEEEEE
Q psy11131         69 DGSANFQCEIT-PYDSGPYLIAWFKDG--RQI------PGR---------------TSSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        69 g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~------~~~---------------~~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      |+++.|.|... ..   ...+.|++..  ...      ...               .....|.|.++..+|+|.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~---~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRG---SQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTT---CCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEcccc---CCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEe
Confidence            67899999877 55   6678898632  110      000               003579999999999999999887


Q ss_pred             eC
Q psy11131        125 RS  126 (150)
Q Consensus       125 ~~  126 (150)
                      ..
T Consensus        78 ~~   79 (94)
T d2gj6d1          78 TD   79 (94)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.01  E-value=5.7e-06  Score=44.60  Aligned_cols=64  Identities=20%  Similarity=0.396  Sum_probs=45.1

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc----------C--CCcc--------eeeEEEccCCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI----------P--GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~----------~--~~~~--------~~~l~~~~~~~~  114 (150)
                      ...|..+.+.+|+.+.|.|... ..   ...+.|++..  ...          .  ...+        ...|.|.++..+
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~   81 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQDI---NNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPE   81 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSC
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCc---CCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeec
Confidence            3456667788999999999877 55   5568898632  210          0  0000        468999999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |+|.|.|-..
T Consensus        82 Dsa~YyCa~~   91 (107)
T d3cx5k1          82 DIATYFCQHH   91 (107)
T ss_dssp             CCSEEEEEEC
T ss_pred             CCCcEEeeeC
Confidence            9999999754

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.5e-07  Score=47.30  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             CeEEEcCCCCCCCe-EEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSG-TYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ..|.|.+++.+|.| .|+|.+.|..|.....+.|.|
T Consensus        56 ~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          56 LGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             EEEEEESCCSTTTTCCEEECCEETTEECCEEECCCC
T ss_pred             eeEEEccccccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            67999999999999 799999999999888877765

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.98  E-value=1.4e-05  Score=43.15  Aligned_cols=63  Identities=22%  Similarity=0.346  Sum_probs=44.3

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC----------C--Ccc--------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP----------G--RTS--------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~----------~--~~~--------~~~l~~~~~~~~~~g  117 (150)
                      |..+.+.+|+++.|.|... ..   ...+.|++..  ....          .  ..+        ...|.|.++..+|++
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~---~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   83 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIG---SRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEA   83 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGG---GSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEcCCCC---CcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCE
Confidence            3467788999999999876 33   4567887632  2110          0  000        457899999999999


Q ss_pred             eEEEEEEeC
Q psy11131        118 IYQCIARRS  126 (150)
Q Consensus       118 ~y~C~~~~~  126 (150)
                      .|.|.+...
T Consensus        84 vYyCA~~~~   92 (109)
T d1w72l1          84 DYYCQVWDS   92 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEecCC
Confidence            999998754

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.96  E-value=3.7e-05  Score=41.72  Aligned_cols=64  Identities=14%  Similarity=0.299  Sum_probs=45.1

Q ss_pred             eCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCc--cc-------C--------CC---------cceeeEEEccCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR--QI-------P--------GR---------TSSTSLVINPVG  112 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~--~~-------~--------~~---------~~~~~l~~~~~~  112 (150)
                      ..|..+.+.+|+++.|.|.....   ...+.|++...  .+       .        ..         .....|.|.++.
T Consensus         4 QsP~~~~~~~G~svtl~C~~s~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQNLN---HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEECSC---CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             EcCCeEEEcCCCCEEEEEEEecC---CCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            45667788999999999987633   45678876321  10       0        00         003579999999


Q ss_pred             CCCCceEEEEEEe
Q psy11131        113 REDRGIYQCIARR  125 (150)
Q Consensus       113 ~~~~g~y~C~~~~  125 (150)
                      .+|++.|.|.+..
T Consensus        81 ~~DSa~YyCa~~~   93 (114)
T d1ogae1          81 KNPTAFYLCASSS   93 (114)
T ss_dssp             SCCCEEEEEEEES
T ss_pred             cCCceeEEEeecc
Confidence            9999999998764

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.95  E-value=2.9e-05  Score=41.20  Aligned_cols=59  Identities=17%  Similarity=0.274  Sum_probs=38.1

Q ss_pred             EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      ...|+...|.|.+.  +|.  ...+.|.++|..+.....           ........+...+...|.|.+...
T Consensus        14 ~~~~~~~tL~C~v~gFyP~--~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPP--VINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHW   85 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSS--CCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cccCCCEEEEEEEEeEECC--CCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            34678889999999  663  689999999877643211           111111123345566899999964

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.95  E-value=2.3e-06  Score=45.29  Aligned_cols=42  Identities=29%  Similarity=0.593  Sum_probs=30.6

Q ss_pred             CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEE
Q psy11131          9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQ   50 (150)
Q Consensus         9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~   50 (150)
                      +.++.... ..|.|..+..+|+|.|+|.+.|..|.. +..+.|.
T Consensus        53 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          53 DSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             TSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            34444444 567888899999999999999998875 3455553

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.95  E-value=3.7e-05  Score=41.64  Aligned_cols=66  Identities=23%  Similarity=0.377  Sum_probs=44.6

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc----------CC--Ccc--------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI----------PG--RTS--------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~----------~~--~~~--------~~~l~~~~~~~~~~g  117 (150)
                      |..+.+.+|+++.|.|... ........+.|++..  ...          ..  ...        ...|.|..+..+|++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            5667889999999999875 321113458898632  111          00  000        467999999999999


Q ss_pred             eEEEEEEeC
Q psy11131        118 IYQCIARRS  126 (150)
Q Consensus       118 ~y~C~~~~~  126 (150)
                      .|.|.+.+.
T Consensus        87 ~YyCa~~~~   95 (112)
T d1lgva1          87 DYYCSSYDG   95 (112)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecC
Confidence            999987753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=3.7e-05  Score=41.61  Aligned_cols=64  Identities=16%  Similarity=0.344  Sum_probs=44.0

Q ss_pred             eCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeec--Cccc----------------CCCcc---------eeeEEEccC
Q psy11131         59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKD--GRQI----------------PGRTS---------STSLVINPV  111 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~--~~~~----------------~~~~~---------~~~l~~~~~  111 (150)
                      ..|....+.+|+++.|.|.....   ...+.|++.  +...                ....+         ...|.|.++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~---~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPISG---HVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT   80 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT---CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred             ECCCeEEECCCCCEEEEEEECCC---CCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence            34666778899999999985433   456888763  1110                00000         357999999


Q ss_pred             CCCCCceEEEEEEe
Q psy11131        112 GREDRGIYQCIARR  125 (150)
Q Consensus       112 ~~~~~g~y~C~~~~  125 (150)
                      ..+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          81 QQEDSAVYLCASSL   94 (112)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             CcCCCEEEEEeeeC
Confidence            99999999998763

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.93  E-value=2.3e-05  Score=41.89  Aligned_cols=63  Identities=19%  Similarity=0.392  Sum_probs=43.5

Q ss_pred             eCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCc--cc----------CC--Ccc--------eeeEEEccCCCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR--QI----------PG--RTS--------STSLVINPVGREDR  116 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~--~~----------~~--~~~--------~~~l~~~~~~~~~~  116 (150)
                      ..|..+.+.+|+.+.|.|.....   ...+.|++...  ..          ..  ...        ...|.|.++..+|+
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~~---~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASSS---VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESSC---CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CcCCeEEECCCCCEEEEEEeCCC---CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            45677788999999999987622   33467876421  10          00  000        46799999999999


Q ss_pred             ceEEEEEE
Q psy11131        117 GIYQCIAR  124 (150)
Q Consensus       117 g~y~C~~~  124 (150)
                      +.|.|...
T Consensus        82 a~YyCa~~   89 (104)
T d1yqvl1          82 ATYYCQQW   89 (104)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99999754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.93  E-value=3.4e-05  Score=41.97  Aligned_cols=66  Identities=20%  Similarity=0.400  Sum_probs=45.8

Q ss_pred             EeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecC--cccC------C----------------CcceeeEEEccCCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDG--RQIP------G----------------RTSSTSLVINPVGR  113 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~--~~~~------~----------------~~~~~~l~~~~~~~  113 (150)
                      ...|..+.+.+|+.+.|.|.....   ...+.|++..  ..+.      .                ......|.|.++..
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~---~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSV---FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP   80 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC---CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC---CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc
Confidence            345667788999999999987622   3457887632  1100      0                00046899999999


Q ss_pred             CCCceEEEEEEeC
Q psy11131        114 EDRGIYQCIARRS  126 (150)
Q Consensus       114 ~~~g~y~C~~~~~  126 (150)
                      +|+|.|.|.+...
T Consensus        81 ~Dsa~YyCa~~~~   93 (115)
T d1ogad1          81 GDTGLYLCAGAGS   93 (115)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             cceeeEcccccCC
Confidence            9999999987743

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7.1e-06  Score=41.93  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=26.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..|.|.+++.+|+|.|.|.+.+..++  ..+.|.|.
T Consensus        48 ~~l~i~~v~~~d~G~Y~C~a~~s~~S--~~v~l~V~   81 (82)
T d1f2qa1          48 SSLNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVF   81 (82)
T ss_dssp             SEEEECSCCGGGCEEEEEECTTSSCC--CCEEEEEE
T ss_pred             ceeEECCCChhhCCcEEEEecCCCCc--ccEEEEEE
Confidence            77999999999999999999886443  34456553

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.93  E-value=3.4e-05  Score=41.63  Aligned_cols=67  Identities=15%  Similarity=0.276  Sum_probs=47.2

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC-------C---------------CcceeeEEEccC
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP-------G---------------RTSSTSLVINPV  111 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~-------~---------------~~~~~~l~~~~~  111 (150)
                      +...+..+.+.+|+.+.|.|... ..   ...+.|++.  +..+.       .               ......|.|.++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~---~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~   79 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASG---YPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASV   79 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSS---CCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCC---CcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCc
Confidence            34567778899999999999876 44   556889763  21100       0               000457889999


Q ss_pred             CCCCCceEEEEEEeC
Q psy11131        112 GREDRGIYQCIARRS  126 (150)
Q Consensus       112 ~~~~~g~y~C~~~~~  126 (150)
                      ..+|++.|.|.+...
T Consensus        80 ~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          80 QESDSAVYYCALSGG   94 (110)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             CcCCCcccceeecCC
Confidence            999999999987643

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=8.7e-06  Score=44.38  Aligned_cols=38  Identities=24%  Similarity=0.407  Sum_probs=29.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP   54 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~   54 (150)
                      .+|.|.+++++|+|.|.|.+..........+.|+|.+.
T Consensus        74 ~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          74 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             EEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            47999999999999999988754333445567777653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.92  E-value=4.4e-05  Score=41.26  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=44.3

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~~~~g  117 (150)
                      |..+.+.+|+++.|.|... .. .....+.|++..  ....            ...+        ...|.|.++..+|+|
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSN-IGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCC-CCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             CcceEeCCCCCEEEEEEECCcC-CcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence            4467889999999999875 21 004458897632  1100            0000        468999999999999


Q ss_pred             eEEEEEEeC
Q psy11131        118 IYQCIARRS  126 (150)
Q Consensus       118 ~y~C~~~~~  126 (150)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (111)
T d1rzfl1          86 DYYCGTWDS   94 (111)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEeecCC
Confidence            999987754

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.8e-06  Score=45.15  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             CeEEEcCCCCCCCe-EEEEEeccCCcceeEEEEEE
Q psy11131         17 PILAIEGVTAEDSG-TYRCSSSNIGGEATAEVRLQ   50 (150)
Q Consensus        17 ~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~l~   50 (150)
                      ..|.|.+++.+|.| .|+|.+.|..|..++.+.|.
T Consensus        70 ~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          70 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            47999999999999 59999999999888877765

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.91  E-value=9.9e-05  Score=39.82  Aligned_cols=67  Identities=28%  Similarity=0.466  Sum_probs=44.6

Q ss_pred             eCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEEeec--CcccC------------CCcc--------eeeEEEccCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAWFKD--GRQIP------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~--~~~~~------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ..|..+.+.+|+++.|.|... . .......+.|++.  +....            ...+        ...|.|.++..+
T Consensus         6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~   85 (111)
T d2gsia1           6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEE   85 (111)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccccc
Confidence            456778889999999999764 2 1111334789764  22110            0001        457999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |++.|.|.+..
T Consensus        86 DsA~YyCa~~~   96 (111)
T d2gsia1          86 DAATYYCSHIR   96 (111)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCceEEEEECC
Confidence            99999997653

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=6.1e-06  Score=42.54  Aligned_cols=36  Identities=14%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~   52 (150)
                      +.+.|.....+|+|.|+|.+.|..|.. +..+.|.|+
T Consensus        49 ~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          49 SPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             SSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            456677778899999999999998864 445676653

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.90  E-value=1.3e-05  Score=41.13  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=22.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG   41 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~   41 (150)
                      .+|.|.+++.+|+|.|+|.+.+...
T Consensus        52 ~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          52 SSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             SEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             eeeEecCCcccCCEEEEEEccCCCc
Confidence            7899999999999999999987543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=7.8e-06  Score=43.15  Aligned_cols=31  Identities=39%  Similarity=0.513  Sum_probs=24.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      .+|.|.+++.+|+|.|.|.+.+.    ...+.|.|
T Consensus        67 ~sL~I~~l~~~DsG~Y~C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          67 FPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             CCEEECSCCGGGCEEEEEEETTE----EEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEecC----CeEEEEEC
Confidence            47999999999999999999763    34445544

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=6e-05  Score=40.78  Aligned_cols=63  Identities=13%  Similarity=0.335  Sum_probs=44.0

Q ss_pred             CCCcEEEecCCcEEEEEEecCCCCCCcEEEEeec--CcccC---------------CCcc---------eeeEEEccCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKD--GRQIP---------------GRTS---------STSLVINPVGR  113 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~--~~~~~---------------~~~~---------~~~l~~~~~~~  113 (150)
                      .|....+.+|+.+.|.|.....   ...+.|++.  +....               ....         ...|.|.++..
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~---~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (113)
T d2ntsp1           5 TPRYLIKTRGQQVTLSCSPISG---HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL   81 (113)
T ss_dssp             ECSEEEEETTCCEEEEEECSTT---CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             CCCeEEECCCCCEEEEEEECCC---CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence            4566778899999999986533   456789762  22110               0000         35799999999


Q ss_pred             CCCceEEEEEEe
Q psy11131        114 EDRGIYQCIARR  125 (150)
Q Consensus       114 ~~~g~y~C~~~~  125 (150)
                      +|++.|.|.+..
T Consensus        82 ~Dsa~YyCA~~~   93 (113)
T d2ntsp1          82 GDSALYLCASSL   93 (113)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceeeeeeeeC
Confidence            999999998764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.88  E-value=3.2e-05  Score=41.86  Aligned_cols=63  Identities=16%  Similarity=0.400  Sum_probs=43.6

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC--------------------CCcceeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP--------------------GRTSSTSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~--------------------~~~~~~~l~~~~~~~~~~g  117 (150)
                      |..+.+.+|+++.|.|... ...  ...+.|++.  +..+.                    .......|.|..+..+|+|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~--~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISG--TDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCT--TCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCc--cccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            5567788999999999876 331  344889873  22110                    0000457999999999999


Q ss_pred             eEEEEEEe
Q psy11131        118 IYQCIARR  125 (150)
Q Consensus       118 ~y~C~~~~  125 (150)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.88  E-value=4e-05  Score=41.50  Aligned_cols=66  Identities=23%  Similarity=0.441  Sum_probs=43.6

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CC--CCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PY--DSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVGR  113 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p--~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~~  113 (150)
                      ..|..+.+.+|+++.|.|... ..  ......+.|++..  ....            ...+        ...|.|.++..
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            456778889999999999864 21  1014567887532  1110            0000        45799999999


Q ss_pred             CCCceEEEEEE
Q psy11131        114 EDRGIYQCIAR  124 (150)
Q Consensus       114 ~~~g~y~C~~~  124 (150)
                      +|++.|.|...
T Consensus        86 ~DsAvYyCa~~   96 (112)
T d1mjul1          86 EDVGVYYCLQH   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEeC
Confidence            99999999543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.84  E-value=3.6e-05  Score=41.63  Aligned_cols=67  Identities=24%  Similarity=0.464  Sum_probs=44.4

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CC-CCCCcEEEEeec--CcccC------------CCcc--------eeeEEEccCCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PY-DSGPYLIAWFKD--GRQIP------------GRTS--------STSLVINPVGRE  114 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~--~~~~~------------~~~~--------~~~l~~~~~~~~  114 (150)
                      ..|..+.+.+|+.+.|.|... .. ......+.|++.  +....            ...+        ...|.|.++..+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   85 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGG
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccc
Confidence            446667788999999999764 11 101344888763  22110            0000        468999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (111)
T d1j05a_          86 DVATYYCQQTN   96 (111)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCccEEEeecC
Confidence            99999997653

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.84  E-value=5.3e-05  Score=40.96  Aligned_cols=65  Identities=14%  Similarity=0.297  Sum_probs=44.8

Q ss_pred             eCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCc--cc-------CCC-----------------cceeeEEEccCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR--QI-------PGR-----------------TSSTSLVINPVG  112 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~--~~-------~~~-----------------~~~~~l~~~~~~  112 (150)
                      ..|....+.+|+.+.|.|.....   ...+.|++...  .+       ...                 .....|.|..+.
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   79 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTMG---HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR   79 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETTC---CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred             ECCCEEEECCCCCEEEEEEEeCC---cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence            34566778899999999986533   45688986321  10       000                 003578899999


Q ss_pred             CCCCceEEEEEEeC
Q psy11131        113 REDRGIYQCIARRS  126 (150)
Q Consensus       113 ~~~~g~y~C~~~~~  126 (150)
                      .+|++.|.|.+...
T Consensus        80 ~~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          80 PSHTSQYLCASSEN   93 (112)
T ss_dssp             TTTCSEEEEEEECS
T ss_pred             ccccccEEEEEecC
Confidence            99999999987744

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=1.9e-05  Score=43.32  Aligned_cols=63  Identities=21%  Similarity=0.389  Sum_probs=44.0

Q ss_pred             CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc--cc---C---------CCcc--------eeeEEEccCCCCCC
Q psy11131         60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR--QI---P---------GRTS--------STSLVINPVGREDR  116 (150)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~~---~---------~~~~--------~~~l~~~~~~~~~~  116 (150)
                      .|..+.+.+|+.+.|.|... ..   ...+.|++...  ..   .         ....        ...|.|.++..+|+
T Consensus         7 ~P~sv~~~~G~svtl~C~~s~~~---~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (119)
T d1f3rb2           7 SPSLLSASVGDRVTLSCKGSQNI---NNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV   83 (119)
T ss_dssp             ETSEECCCTTCCEEEEEECSSCC---BTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             cCCEEEECCCCCEEEEEEeCCCC---cceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCC
Confidence            45566678899999999876 44   55688986421  10   0         0000        35799999999999


Q ss_pred             ceEEEEEEe
Q psy11131        117 GIYQCIARR  125 (150)
Q Consensus       117 g~y~C~~~~  125 (150)
                      +.|.|....
T Consensus        84 avYyCa~~~   92 (119)
T d1f3rb2          84 ATYFCYQYN   92 (119)
T ss_dssp             SEEEEEEES
T ss_pred             eEEEeeccC
Confidence            999997653

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=3.9e-05  Score=40.66  Aligned_cols=59  Identities=14%  Similarity=0.196  Sum_probs=38.4

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ..|+...|.|.+.  +|.  ...+.|.++|..+.....          ........+..++.+.|+|.+....
T Consensus        17 ~~~~~~tL~C~~~gFyP~--~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPS--DIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSS--CCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cCCCCEEEEEEECccCCC--CcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            4678889999999  663  569999999877643221          1112222233455668999999643

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=8.9e-06  Score=43.48  Aligned_cols=40  Identities=13%  Similarity=0.132  Sum_probs=32.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCce
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR   56 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~   56 (150)
                      ..|.|..+..+|.|.|+|++.|..|.......+.+.++..
T Consensus        60 s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s~p~~   99 (103)
T d1iama1          60 VTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQ   99 (103)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEE
T ss_pred             EEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEcCCCE
Confidence            4689999999999999999999888776666777766543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.9e-05  Score=41.58  Aligned_cols=60  Identities=17%  Similarity=0.252  Sum_probs=40.3

Q ss_pred             EEEecCCcEEEEEEec---CCCCCCcEEEEeecCc--cc------CC-----C----cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT---PYDSGPYLIAWFKDGR--QI------PG-----R----TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~---~p~~~~~~~~w~~~~~--~~------~~-----~----~~----------~~~l~~~~~~~  113 (150)
                      ..+.+|+++.|.|...   ..   ...+.|++...  ..      ..     .    .+          ...|.|.++..
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~---~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~   85 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFA---SSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQV   85 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHT---TSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEccCCCEEEEEEeCCCCCC---CCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCc
Confidence            4566899999999864   23   44677876321  10      00     0    00          34689999999


Q ss_pred             CCCceEEEEEEeC
Q psy11131        114 EDRGIYQCIARRS  126 (150)
Q Consensus       114 ~~~g~y~C~~~~~  126 (150)
                      +|+|.|.|.+...
T Consensus        86 ~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          86 EDSGLYQCVIYQP   98 (113)
T ss_dssp             GGCEEEEEEECCT
T ss_pred             ccCceEEEEEECC
Confidence            9999999998644

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.3e-05  Score=41.52  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.+++.+|+|.|.|.+..
T Consensus        69 ~sL~I~~v~~~D~G~Y~C~V~~   90 (110)
T d1ncna_          69 WTLRLHNLQIKDKGLYQCIIHH   90 (110)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCChhHCEEEEEEEEe
Confidence            6899999999999999999864

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.80  E-value=4.8e-05  Score=41.09  Aligned_cols=64  Identities=19%  Similarity=0.473  Sum_probs=43.8

Q ss_pred             eCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeec--CcccC-------------C---Ccc---------eeeEEEccC
Q psy11131         59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKD--GRQIP-------------G---RTS---------STSLVINPV  111 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~--~~~~~-------------~---~~~---------~~~l~~~~~  111 (150)
                      ..|....+.+|+.+.|.|.....   ...+.|++.  +..+.             .   ..+         ...|.|.++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   80 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISG---HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA   80 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT---CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred             ECCCEEEECCCCCEEEEEEECCC---CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence            34666778899999999975433   456888753  21100             0   000         357999999


Q ss_pred             CCCCCceEEEEEEe
Q psy11131        112 GREDRGIYQCIARR  125 (150)
Q Consensus       112 ~~~~~g~y~C~~~~  125 (150)
                      ..+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (111)
T d2esve1          81 ELEDSGVYFCASSQ   94 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             ccCCCceEEEeeeC
Confidence            99999999998653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=9.4e-05  Score=40.25  Aligned_cols=65  Identities=18%  Similarity=0.416  Sum_probs=42.5

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc-------CCCc-------c---------eeeEEEccCCCC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI-------PGRT-------S---------STSLVINPVGRE  114 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~-------~~~~-------~---------~~~l~~~~~~~~  114 (150)
                      |..+.+.+|+.+.|.|... ........+.|++.  +...       ....       .         ...|.|.++..+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            4455667899999999975 22100335779863  2210       0000       0         468999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998763

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.78  E-value=1.1e-05  Score=41.55  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=26.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      ..|.|.+++.+|+|.|+|.+.+..++  ..+.|.|.
T Consensus        51 ~~l~i~~v~~~dsG~Y~C~a~ns~~S--~~v~l~V~   84 (85)
T d2fcba1          51 QPSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVL   84 (85)
T ss_dssp             SSEEEEECCGGGCEEEEEECTTSBCC--CCEEEEEE
T ss_pred             cceEEeeccccCCcEEEEECCCCccc--ccEEEEEE
Confidence            67999999999999999999876433  33455553

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=5.6e-05  Score=39.94  Aligned_cols=59  Identities=17%  Similarity=0.260  Sum_probs=37.8

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ..|+.+.|.|.+.  .|.  ...+.|.+++..+.....          ........+...+...|+|.+....
T Consensus        16 ~~~~~~tL~C~v~gf~P~--~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPP--HIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSS--CCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECC--CcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            3577889999999  662  579999999876543221          1111122233445568999998643

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00023  Score=37.19  Aligned_cols=55  Identities=13%  Similarity=0.310  Sum_probs=38.1

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .++.+.|.|.+.  .|   .+.+.|.+++..+.....             .+.|.+.   ..+...|.|.+.....
T Consensus        15 s~~~~~L~C~~~g~~P---~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFP---EPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHL   84 (95)
T ss_dssp             STTEEEEEEEEEEESS---CEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTC
T ss_pred             CCCEEEEEEEECcccC---CCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCC
Confidence            456688999999  78   889999998876543211             2344443   2345689999997654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.75  E-value=0.00021  Score=38.59  Aligned_cols=67  Identities=25%  Similarity=0.475  Sum_probs=44.6

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CC--CCCCcEEEEeecC--cccC------------CCcc--------eeeEEEccCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PY--DSGPYLIAWFKDG--RQIP------------GRTS--------STSLVINPVG  112 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p--~~~~~~~~w~~~~--~~~~------------~~~~--------~~~l~~~~~~  112 (150)
                      ...|..+.+.+|+.+.|.|... ..  ......+.|++..  ....            ...+        ...|.|.++.
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~   85 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   85 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence            3456777889999999999864 21  1013568887632  1100            0000        4689999999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|++.|.|...
T Consensus        86 ~~DsavYyCa~~   97 (113)
T d1n4xl_          86 AEDLGIYYCFQG   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccCEEEEEEEC
Confidence            999999999654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.74  E-value=6.7e-06  Score=43.40  Aligned_cols=62  Identities=24%  Similarity=0.490  Sum_probs=42.6

Q ss_pred             EEEecCCcEEEEEEecCCCCCCcEEEEeec--CcccC------------CCcc----------eeeEEEccCCCCCCceE
Q psy11131         64 LSVHLDGSANFQCEITPYDSGPYLIAWFKD--GRQIP------------GRTS----------STSLVINPVGREDRGIY  119 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~--~~~~~------------~~~~----------~~~l~~~~~~~~~~g~y  119 (150)
                      +.+.+|+.+.|.|.....   ...+.|++.  +..+.            ...+          ...|.|.++..+|+|.|
T Consensus         3 lsV~eG~~vtL~C~~~~~---~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   79 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS---INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASY   79 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC---EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCC
T ss_pred             ceECCCCCEEEEEEEeCC---cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEE
Confidence            346789999999976533   567889763  21110            0000          34699999999999999


Q ss_pred             EEEEEeCCC
Q psy11131        120 QCIARRSDG  128 (150)
Q Consensus       120 ~C~~~~~~g  128 (150)
                      .|.+....|
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            998876554

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.7e-05  Score=40.58  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .+|.|.+++.+|+|.|.|.+.+.
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~V~~~   87 (105)
T d1dr9a1          65 LSIVILALRPSDEGTYECVVLKY   87 (105)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEEEECcCChHHCeEEEEEEEeC
Confidence            58999999999999999988754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.74  E-value=0.00014  Score=39.21  Aligned_cols=65  Identities=18%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC------------CCcc----------eeeEEEccCCCCC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP------------GRTS----------STSLVINPVGRED  115 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~------------~~~~----------~~~l~~~~~~~~~  115 (150)
                      |..+.+.+|+++.|.|... ..- ...-+.|++..  ..+.            ...+          ...|.|.++..+|
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~-~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   85 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNI-DSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCG-GGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCeeEECCCCCEEEEEEECCCCc-cCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence            5567889999999999875 220 02347787632  1100            0000          4589999999999


Q ss_pred             CceEEEEEEeC
Q psy11131        116 RGIYQCIARRS  126 (150)
Q Consensus       116 ~g~y~C~~~~~  126 (150)
                      ++.|.|.....
T Consensus        86 sa~YyCA~~~~   96 (111)
T d1cd0a_          86 EADYYCQSYDA   96 (111)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcEEEEeeccC
Confidence            99999987643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.71  E-value=0.00011  Score=39.71  Aligned_cols=66  Identities=21%  Similarity=0.431  Sum_probs=43.6

Q ss_pred             eCCCcEEEecCCcEEEEEEec-C---CCCCCcEEEEeec--Cccc------------CCCcc--------eeeEEEccCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-P---YDSGPYLIAWFKD--GRQI------------PGRTS--------STSLVINPVG  112 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~---p~~~~~~~~w~~~--~~~~------------~~~~~--------~~~l~~~~~~  112 (150)
                      ..|..+.+.+|+.+.|.|... .   ......-+.|++.  +...            .....        ...|.|..+.
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~   85 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ   85 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc
Confidence            456777889999999999753 1   1000345788763  2110            00000        4579999999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|+|.|.|-..
T Consensus        86 ~~Dsa~YyCA~~   97 (113)
T d1q9ra1          86 AEDLAVYYCKQS   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCCCeEEEeccc
Confidence            999999999764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.70  E-value=8e-05  Score=40.28  Aligned_cols=66  Identities=24%  Similarity=0.484  Sum_probs=43.5

Q ss_pred             eCCCcEEEecCCcEEEEEEec-CC--CCCCcEEEEeec--Cccc----------C--CCcc--------eeeEEEccCCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEIT-PY--DSGPYLIAWFKD--GRQI----------P--GRTS--------STSLVINPVGR  113 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~p--~~~~~~~~w~~~--~~~~----------~--~~~~--------~~~l~~~~~~~  113 (150)
                      ..|..+.+.+|+.+.|.|... ..  .....-+.|++.  +...          .  ....        ...|.|.++..
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~   85 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA   85 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc
Confidence            456778889999999999854 21  000345778753  2110          0  0000        35799999999


Q ss_pred             CCCceEEEEEE
Q psy11131        114 EDRGIYQCIAR  124 (150)
Q Consensus       114 ~~~g~y~C~~~  124 (150)
                      +|++.|.|...
T Consensus        86 eDsAvYYC~~~   96 (112)
T d1ncwl1          86 EDLGVYYCWQG   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcCEeEEEEcC
Confidence            99999999543

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.69  E-value=9.5e-05  Score=39.99  Aligned_cols=66  Identities=14%  Similarity=0.287  Sum_probs=45.2

Q ss_pred             EEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeec--CcccC-------C--------Ccc---------eeeEEEcc
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKD--GRQIP-------G--------RTS---------STSLVINP  110 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~--~~~~~-------~--------~~~---------~~~l~~~~  110 (150)
                      +...|..+.+.+|+++.|.|.....   ...+.|++.  +..+.       .        ...         ...|.|..
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~~---~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~   79 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDMD---HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILES   79 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESSC---CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEEcCC---ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEecc
Confidence            3455677788899999999976522   456778763  21100       0        000         35788999


Q ss_pred             CCCCCCceEEEEEEe
Q psy11131        111 VGREDRGIYQCIARR  125 (150)
Q Consensus       111 ~~~~~~g~y~C~~~~  125 (150)
                      +..+|+|.|.|.+..
T Consensus        80 ~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          80 ASTNQTSMYLCASSS   94 (113)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CccCCcccEEeeEcc
Confidence            999999999998874

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.68  E-value=4.3e-05  Score=41.10  Aligned_cols=62  Identities=21%  Similarity=0.400  Sum_probs=43.1

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------------CCCcc--------eeeEEEccCCCCCCc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------------PGRTS--------STSLVINPVGREDRG  117 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------------~~~~~--------~~~l~~~~~~~~~~g  117 (150)
                      |..+.+.+|+++.|.|... ..   ...+.|++.  +..+            ....+        ...|.|.++..+|+|
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~---~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa   82 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLP---KNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA   82 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGG---GSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS
T ss_pred             CCeeEECCCCCEEEEEECCCCC---CccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCc
Confidence            4567788999999999876 33   445678753  2110            00000        457899999999999


Q ss_pred             eEEEEEEe
Q psy11131        118 IYQCIARR  125 (150)
Q Consensus       118 ~y~C~~~~  125 (150)
                      .|.|.+..
T Consensus        83 ~YyCA~~~   90 (108)
T d1nfde1          83 AYYCLSSY   90 (108)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99998764

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.68  E-value=0.0001  Score=39.83  Aligned_cols=63  Identities=14%  Similarity=0.354  Sum_probs=43.6

Q ss_pred             eCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeec--Cccc--------------CC-Cc---------ceeeEEEccCC
Q psy11131         59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKD--GRQI--------------PG-RT---------SSTSLVINPVG  112 (150)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~--~~~~--------------~~-~~---------~~~~l~~~~~~  112 (150)
                      ..|....+.+|+++.|.|.....   ...+.|++.  +..+              .. ..         ....|.|..+.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~s~~---~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           4 QTPKFQVLKTGQSMTLQCAQDMN---HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             EECSEEEEETTCCEEEEEEESSC---CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             ECCCeEEECCCCCEEEEEEEECC---ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            34566678899999999987632   456888763  2110              00 00         03579999999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|++.|.|.+.
T Consensus        81 ~~DsavYyCA~~   92 (112)
T d2bnub1          81 PSQTSVYFCASS   92 (112)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HHHCEEEEEeec
Confidence            999999999775

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00014  Score=39.60  Aligned_cols=65  Identities=22%  Similarity=0.363  Sum_probs=42.8

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cccC-------------CC-cc---------eeeEEEccCCCC
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQIP-------------GR-TS---------STSLVINPVGRE  114 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~~-------------~~-~~---------~~~l~~~~~~~~  114 (150)
                      |..+.+.+|..+.|.|... ........+.|++..  ....             .. ..         ...|.|.++..+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            4455677899999999976 321002368897642  1110             00 00         468999999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |.|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998764

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.67  E-value=0.0001  Score=39.91  Aligned_cols=65  Identities=12%  Similarity=0.266  Sum_probs=44.5

Q ss_pred             EeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCc--cc----------------CCCcc--------eeeEEEccC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR--QI----------------PGRTS--------STSLVINPV  111 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~--~~----------------~~~~~--------~~~l~~~~~  111 (150)
                      ...|..+.+.+|+.+.|.|.....   ...+.|++...  .+                .....        ...|.|.++
T Consensus         5 tQ~P~~~~~~~G~~v~l~C~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           5 VQSPRHIIKEKGGRSVLTCIPISG---HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             EEECSEEEEETTCCCEEEEECCTT---CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             EEcCCEEEEeCCCCEEEEEEeCCC---CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            345667778899999999986522   45688876421  10                00000        347889999


Q ss_pred             CCCCCceEEEEEEe
Q psy11131        112 GREDRGIYQCIARR  125 (150)
Q Consensus       112 ~~~~~g~y~C~~~~  125 (150)
                      ..+|++.|.|.+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          82 ELEDSAMYFCASSL   95 (113)
T ss_dssp             CGGGCEEECEEEES
T ss_pred             CcCCceeEEEEeec
Confidence            99999999998763

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00042  Score=36.08  Aligned_cols=57  Identities=12%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .+..+.|.|.+.  +|.  ...+.|.++|..+.....            ........+...+...|+|.+...
T Consensus        14 ~~~~~tL~C~~~gFyP~--~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQ--NITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             CSSCEEEEEEEEEEBSS--CCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEeeEECC--CCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            456789999998  663  569999999876542211            111122223334556799999965

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=0.00011  Score=39.57  Aligned_cols=64  Identities=16%  Similarity=0.292  Sum_probs=42.5

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC------------CCcc--------eeeEEEccCCCCCCce
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP------------GRTS--------STSLVINPVGREDRGI  118 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~------------~~~~--------~~~l~~~~~~~~~~g~  118 (150)
                      ..+.+.+|+++.|.|... ........+.|++.  +....            ...+        ...|.|.++..+|+|.
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~   87 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAI   87 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEe
Confidence            357788999999999875 22000233778752  22110            0000        4689999999999999


Q ss_pred             EEEEEEe
Q psy11131        119 YQCIARR  125 (150)
Q Consensus       119 y~C~~~~  125 (150)
                      |.|....
T Consensus        88 YyCa~~~   94 (110)
T d1oaql_          88 YFCALWY   94 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEccc
Confidence            9999774

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.60  E-value=0.00026  Score=38.65  Aligned_cols=67  Identities=19%  Similarity=0.408  Sum_probs=45.6

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC------------CCcc----------eeeEEEccCC
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP------------GRTS----------STSLVINPVG  112 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~------------~~~~----------~~~l~~~~~~  112 (150)
                      ...+..+.+.+|+++.|.|... ..-. ...+.|++.  +..+.            ...+          ...|.|..+.
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~-~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIG-NYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGG-GSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCcc-CCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            3445667789999999999886 3200 356889763  21110            0001          3689999999


Q ss_pred             CCCCceEEEEEEe
Q psy11131        113 REDRGIYQCIARR  125 (150)
Q Consensus       113 ~~~~g~y~C~~~~  125 (150)
                      .+|.|.|.|....
T Consensus        84 ~~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 ERDEGSYYCACDT   96 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCCceeecCccc
Confidence            9999999998764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.60  E-value=0.0002  Score=39.17  Aligned_cols=67  Identities=19%  Similarity=0.358  Sum_probs=43.5

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc-------C---------CCcc----------eeeEEE
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI-------P---------GRTS----------STSLVI  108 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~-------~---------~~~~----------~~~l~~  108 (150)
                      ...+..+...+|+.+.|.|... ..- ....+.|++.  +..+       .         ...+          ...|.|
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~-~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I   83 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESF-RSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGG-GGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccc-cCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence            3445567778999999999865 210 0345778763  2110       0         0000          346999


Q ss_pred             ccCCCCCCceEEEEEEe
Q psy11131        109 NPVGREDRGIYQCIARR  125 (150)
Q Consensus       109 ~~~~~~~~g~y~C~~~~  125 (150)
                      .++..+|++.|.|....
T Consensus        84 ~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          84 YSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             CSCCGGGCSEEEEEECC
T ss_pred             cccccccceeEEEEEcC
Confidence            99999999999997753

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.00063  Score=36.48  Aligned_cols=62  Identities=13%  Similarity=0.304  Sum_probs=41.8

Q ss_pred             cEEEecCCcEEEEEEec---CCCCCCcEEEEeec--Ccc----cCCC-----------cc----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT---PYDSGPYLIAWFKD--GRQ----IPGR-----------TS----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~---~p~~~~~~~~w~~~--~~~----~~~~-----------~~----------~~~l~~~~~~  112 (150)
                      ...+.+|+++.|.|...   ..   .....|.+.  +..    +...           .+          ...|.|.++.
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~---~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~   80 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYA---NSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQ   80 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHT---TSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCcCCCCCCEEEEEEECCCCcc---CCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccc
Confidence            35678899999999975   23   456778763  211    0000           00          3468899999


Q ss_pred             CCCCceEEEEEEeCC
Q psy11131        113 REDRGIYQCIARRSD  127 (150)
Q Consensus       113 ~~~~g~y~C~~~~~~  127 (150)
                      .+|.|.|.|.+....
T Consensus        81 ~eDsa~YyCa~~~~~   95 (110)
T d1u9ka_          81 VTDSGLYRCVIYHPP   95 (110)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             cCCCEEEEEEEeCCC
Confidence            999999999986543

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.59  E-value=6.1e-05  Score=40.67  Aligned_cols=41  Identities=22%  Similarity=0.161  Sum_probs=30.9

Q ss_pred             ceEEeC-CeEEEcCCCCCCCe---EEEEEeccCCcceeEEEEEEE
Q psy11131         11 RTRVLG-PILAIEGVTAEDSG---TYRCSSSNIGGEATAEVRLQV   51 (150)
Q Consensus        11 ~~~~~~-~~l~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~l~v   51 (150)
                      ++.... ++|.|.+++..|+|   .|.|.+.|..|.......+.+
T Consensus        56 ~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~~  100 (111)
T d1biha2          56 RITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE  100 (111)
T ss_dssp             TEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEE
T ss_pred             eeccccccccEEeeeEeeccCCceEEEEEEEeCCCCceEEEEEEE
Confidence            344433 78999999999877   799999999887766544443

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00088  Score=34.76  Aligned_cols=59  Identities=17%  Similarity=0.226  Sum_probs=38.3

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .|..+.|.|.+.  +|.  ...+.|.+++..+.....          ........+...+...|+|.+.....
T Consensus        14 ~~~~~tL~C~~~gFyP~--~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPG--KIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TTSCEEEEEEEEEEBSS--CEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTC
T ss_pred             CCCCEEEEEEEEeEECC--CCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCC
Confidence            467899999998  663  579999999876543211          12222223344555679999987543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=6e-05  Score=40.73  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=25.1

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccC
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      ..|+.+..      .+|.|.+++.+|+|.|.|.+...
T Consensus        65 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CCCeEEEEeCcCCEEEEEECCCChhHCEEEEEEEEeC
Confidence            45666643      56999999999999999998754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00011  Score=39.39  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        70 ~~L~I~~l~~~DsG~Y~C~v~~~   92 (108)
T d1hkfa_          70 FTVTMTDLREEDSGHYWCRIYRP   92 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECT
T ss_pred             EEEEEhhhCCCCCEEEEEEEecC
Confidence            46999999999999999987754

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=5.5e-05  Score=41.39  Aligned_cols=30  Identities=27%  Similarity=0.346  Sum_probs=24.4

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      +|+.+..      .+|.|.+++++|+|.|.|.+...
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          70 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEET
T ss_pred             eEEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEeC
Confidence            4666544      57999999999999999998653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.53  E-value=0.00051  Score=37.63  Aligned_cols=67  Identities=19%  Similarity=0.384  Sum_probs=43.6

Q ss_pred             EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC-----------------CCcc----------eeeEE
Q psy11131         58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP-----------------GRTS----------STSLV  107 (150)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~-----------------~~~~----------~~~l~  107 (150)
                      ...+.++...+|+++.|.|.+. ..-. ...+.|++.  +..+.                 ...+          ...|.
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITIS-ATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTT-TSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCcc-cCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            3445567788899999999876 2200 345778653  11100                 0001          24689


Q ss_pred             EccCCCCCCceEEEEEEe
Q psy11131        108 INPVGREDRGIYQCIARR  125 (150)
Q Consensus       108 ~~~~~~~~~g~y~C~~~~  125 (150)
                      |.++..+|.+.|.|....
T Consensus        84 i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          84 IHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             ECSCCGGGCEEEEEEEEE
T ss_pred             ccccccccCcEEEEeeeC
Confidence            999999999999998764

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00092  Score=33.10  Aligned_cols=55  Identities=16%  Similarity=0.370  Sum_probs=38.7

Q ss_pred             ecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---eeeEEEccCCCCCCceEEEEEE
Q psy11131         67 HLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        67 ~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ..|..+.|.|... .+ ....-..|.+++..+.....   ...+.+..  .+++|.|.|..-
T Consensus        10 ~~~sk~~LtCnLt~s~-~~i~ghrW~K~gkvl~ed~~~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSA-TEVTGHRWLKGGVVLKEDALPGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCS-SCCCEEEEESSSEEEECTTCCCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCC-CceeeeEEeeCCEEccccCCCCCceEEEEec--CCCCceEEEEEc
Confidence            4577889999987 32 11557789999988875543   34455543  678999999954

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.52  E-value=0.00029  Score=37.00  Aligned_cols=58  Identities=16%  Similarity=0.352  Sum_probs=35.2

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      .++...|.|.+.  .|.  ...+.|.++|..+.....           ........+...+...|+|.+....
T Consensus        17 ~~~~~tL~C~v~~F~P~--~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPG--SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSS--CCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECC--CcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            355667999998  662  569999998876543211           2222223344556678999999654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00015  Score=38.69  Aligned_cols=59  Identities=15%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc---------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .++.+.|.|.+.  .|.  ...+.|.+++..+.....               .+.|.+..-.-.....|.|.+.....
T Consensus        18 ~~~~vtL~Clv~~f~P~--~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPE--DISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSCCEEEEEEEEEEBSS--CCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             cCCcEEEEEEEEeeeCC--CcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            456789999998  553  579999998875432110               23444443322344579999996543

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00051  Score=35.40  Aligned_cols=49  Identities=14%  Similarity=0.220  Sum_probs=37.2

Q ss_pred             eecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce--eEEEEEEEe
Q psy11131          4 LLVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVS   52 (150)
Q Consensus         4 ~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~   52 (150)
                      .+..++..+.+.. ++|.|..+.+.|+|.|.-.+.+..|..  ...+.|.|+
T Consensus        49 ~~f~~~~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          49 ETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             CEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             CCCCCCceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            3455666677666 999999999999999999999877763  445555553

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.39  E-value=0.00076  Score=35.36  Aligned_cols=57  Identities=14%  Similarity=0.297  Sum_probs=37.6

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..++.+.|.|.+.  +|.  ...+.|.+++..+.....              .+.|.+   ...+...|.|.+.....
T Consensus        15 ~~~~~~tL~C~~~gFyP~--~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPA--EVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSS--CCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTTS
T ss_pred             cCCCcEEEEEEEEEEECC--CCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEEEEEEEeCCC
Confidence            4567789999998  563  679999999876533211              122333   34445579999997543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.35  E-value=0.0022  Score=33.83  Aligned_cols=57  Identities=14%  Similarity=0.303  Sum_probs=37.7

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..|+...|.|.+.  .|.  ...+.|.+++..+.....             .+.|.+.   .++...|.|.+.....
T Consensus        16 e~~~~~tL~C~v~gF~P~--~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPP--MLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSS--CEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEEC---CCTTCCEEEEEEETTT
T ss_pred             hcCCCeEEEEEEeeEECC--CCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEe---cCCCCEEEEEEEeCCC
Confidence            4577788999998  663  679999998876432211             2334333   3445579999997643

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00027  Score=37.43  Aligned_cols=57  Identities=21%  Similarity=0.376  Sum_probs=36.2

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      +..+.|.|.+.  .|.  ...+.|.++|..+.....              .+.|.+..-.-.....|+|.|....
T Consensus        20 ~~~~tl~C~v~~f~P~--~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          20 TAKATLVCTITDFYPG--VVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTEEEEEEEEEEEBSS--CCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCeEEEEEEEeeeeCC--CCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            45688999998  563  569999998865432211              2344444333234567999998643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.33  E-value=0.00057  Score=36.72  Aligned_cols=65  Identities=15%  Similarity=0.328  Sum_probs=44.7

Q ss_pred             EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccC-------CCc---------c-------eeeEEEcc
Q psy11131         57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIP-------GRT---------S-------STSLVINP  110 (150)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~-------~~~---------~-------~~~l~~~~  110 (150)
                      +...|....+.+|+.+.|.|... ..   ...+.|++.  +..+.       ...         +       ...|.|..
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~   80 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQ---YPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQV   80 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTT---CCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCC---CCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEec
Confidence            34456667778999999999876 44   567889874  22110       000         0       24578888


Q ss_pred             CCCCCCceEEEEEE
Q psy11131        111 VGREDRGIYQCIAR  124 (150)
Q Consensus       111 ~~~~~~g~y~C~~~  124 (150)
                      ...+|++.|.|...
T Consensus        81 ~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          81 ANMSQGRTLYCTCS   94 (112)
T ss_dssp             ESCCSCEEEEEEEE
T ss_pred             CCccCCccEEEEEe
Confidence            88999999999875

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.0015  Score=33.65  Aligned_cols=54  Identities=19%  Similarity=0.309  Sum_probs=35.8

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      +..+.|.|.+.  .|.  ...+.|.+++..+.....            .+.|.+.   ..+...|.|.+....
T Consensus        15 ~~~~~L~C~~~gF~P~--~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPP--ELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSS--CCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECC--CCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            34689999998  663  679999999876543221            2333333   345567999998543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00017  Score=38.90  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=23.2

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      +|+.+..      .+|.|.+++.+|+|.|.|.+...
T Consensus        63 ~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          63 GRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQP   98 (113)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCT
T ss_pred             CeEEEEEECCCCEEEEEEccCCcccCceEEEEEECC
Confidence            4665543      35899999999999999987543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00014  Score=38.49  Aligned_cols=58  Identities=19%  Similarity=0.346  Sum_probs=36.1

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      .+..+.|.|.+.  .|.  ...+.|.++|..+.....              .+.|.+....-.....|.|.+....
T Consensus        19 ~~~~~tL~C~v~~f~P~--~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          19 QANKATLVCLISDFYPG--AVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             HTTCEEEEEEEEEEBSS--CCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             cCCcEEEEEEEEeeCCC--CeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            356789999998  553  568999998876543211              2334433322122446999999753

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.23  E-value=0.00097  Score=35.13  Aligned_cols=56  Identities=18%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ..|+...|.|.+.  .|.  ...+.|.++|..+..+..              .+.|.+.   ..+...|+|.+....
T Consensus        17 ~~~~~~tL~C~v~gF~P~--~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPP--VVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDDFYDCEVDHWG   88 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSS--CCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEEeEECC--CCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCCEEEEEEEECC
Confidence            4567788999998  663  569999999876543211              2334333   334457999998653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00038  Score=37.59  Aligned_cols=31  Identities=23%  Similarity=0.405  Sum_probs=23.9

Q ss_pred             CCCceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131          8 PGPRTRVLG------PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus         8 ~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+.|+.+..      ..|.|.++.++|+|.|.|.+..
T Consensus        58 ~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          58 QDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS   94 (114)
T ss_dssp             SCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             ccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEe
Confidence            345666543      3599999999999999997754

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0011  Score=34.44  Aligned_cols=62  Identities=10%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             CcEEEecCCcEEEEEEecCCCCCCcEEEE-eecCcccCCCc-c-----eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         62 PLLSVHLDGSANFQCEITPYDSGPYLIAW-FKDGRQIPGRT-S-----STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~p~~~~~~~~w-~~~~~~~~~~~-~-----~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      ..+.+.+|+.+.+.|....|   ...+.. ...+..+.... .     ..-+++.+....+.|.|.|.+...
T Consensus        13 ~~V~v~eg~~~vIPC~vT~P---~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVTSP---NITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEEEECTTSCEEECCCBSCT---TSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CEEEEeCCCCEEEEccCCCC---CceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            34678899999999999866   445443 33444333221 1     456888999999999999999843

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.22  E-value=0.0012  Score=34.59  Aligned_cols=55  Identities=18%  Similarity=0.323  Sum_probs=36.7

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      ..++...|.|.+.  +|.  ...+.|.++|..+.....              .+.|.+   ...+...|.|.+...
T Consensus        17 ~~~~~~tL~C~~~gFyP~--~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPP--VVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTF---LPSADEIYDCKVEHW   87 (99)
T ss_dssp             CTTSCEEEEEEEEEECSS--CCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEE---CCCTTCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECC--CCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEE---cCCCCCEEEEEEEeC
Confidence            4567788999998  663  678999999876543211              223333   334455799999864

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0032  Score=33.25  Aligned_cols=61  Identities=11%  Similarity=0.161  Sum_probs=36.2

Q ss_pred             EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCC--CCCceEEEEEEeCCC
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGR--EDRGIYQCIARRSDG  128 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~--~~~g~y~C~~~~~~g  128 (150)
                      ......+.|.|.+.  .|.  ...+.|..++........             .+.|.+....-  .....|+|.+....+
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~--~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~   95 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPD--SITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG   95 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSS--CCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             cCCCCceEEEEEEecccCC--cEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCC
Confidence            33456789999998  663  679999987765422110             23444443321  122479999997654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0019  Score=33.56  Aligned_cols=56  Identities=18%  Similarity=0.286  Sum_probs=34.5

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +..+.|.|.+.  +|.  ...++|.++|..+.....           ......-.+...+...|+|.+...
T Consensus        15 ~~~~~L~C~~~gFyP~--~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          15 DHEATLRCWALGFYPA--EITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             TTEEEEEEEEEEEBSS--CCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEEeEeCC--CCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEEC
Confidence            45689999999  663  679999998875532211           111111122334445799999954

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.15  E-value=0.0011  Score=34.59  Aligned_cols=59  Identities=15%  Similarity=0.326  Sum_probs=34.4

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .++...|.|.+.  .|.  ...+.|.+++..+.....           ........+...+...|.|.+.....
T Consensus        15 ~~~~~tL~C~~~gF~P~--~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPG--QIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             ----CEEEEEEEEEBSS--CCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTC
T ss_pred             CCCCEEEEEEEeeeECC--CeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCC
Confidence            355678999998  663  679999998865432211           11222223344556689999986543

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00071  Score=35.85  Aligned_cols=57  Identities=16%  Similarity=0.331  Sum_probs=36.4

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      +.++.|.|.+.  .|.  ...+.|.++|..+.....             .+.|.+....-.....|.|.|....
T Consensus        21 ~~tv~L~Cl~~~f~P~--~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          21 PPTIQLLCLVSGYTPG--TIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CSEEEEEEEEEEECCC--CEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCeEEEEEEEEEEECC--CcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            45688999998  662  568999998876543211             2344444332223456999999754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.12  E-value=0.00062  Score=36.82  Aligned_cols=30  Identities=37%  Similarity=0.338  Sum_probs=23.5

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .|+.+..      .+|+|.+++.+|+|.|.|.+...
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          63 GRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECT
T ss_pred             eEEEEEecCceeEEeeeecCccccccccceeeEecC
Confidence            5666543      36899999999999999976643

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.08  E-value=0.00087  Score=35.70  Aligned_cols=30  Identities=27%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|+....    ..|.|.++..+|+|.|.|.+..
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          59 PSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             CTTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             ccccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            45666654    5799999999999999997654

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.0015  Score=34.42  Aligned_cols=58  Identities=14%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCc--c---------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT--S---------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~--~---------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .++.+.|.|.+.  .|.  ...+.|..++.......  .         .+.|.+....- +.+.|.|.|....+
T Consensus        19 ~~~~~~l~Cl~~gf~P~--~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPE--PVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPAS   89 (102)
T ss_dssp             ---CEEEEEEEEEEBSS--CCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGG
T ss_pred             CCCcEEEEEEEeeeeCC--CeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCC
Confidence            467899999998  663  67999976654321100  0         24555554433 24579999997544

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00037  Score=36.58  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=21.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGG   41 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~   41 (150)
                      ..+.|.+++..|+|.|+|...+...
T Consensus        62 a~F~l~~vt~~~~G~Y~C~y~~~~~   86 (99)
T d1ucta1          62 PEFVIDHMDANKAGRYQCQYRIGHY   86 (99)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             EEEEecCCCHHHCceEEEEEECCCc
Confidence            4689999999999999999877543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0024  Score=34.45  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             eeEEEccCCCCCCceEEEEEEe
Q psy11131        104 TSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus       104 ~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        77 ~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          77 VTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCcccCeEEEEEEec
Confidence            4799999999999999998764

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.02  E-value=0.00069  Score=36.10  Aligned_cols=29  Identities=38%  Similarity=0.537  Sum_probs=23.0

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|+....    ..|.|.++..+|+|.|.|....
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CcceecccCCEEEEEEcccCcCCCEEEEEEcCC
Confidence            4555544    5799999999999999997654

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00031  Score=37.53  Aligned_cols=60  Identities=12%  Similarity=0.401  Sum_probs=37.3

Q ss_pred             EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCc--------------c----eeeEEEccCCCCCCceEEEEEEe
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT--------------S----STSLVINPVGREDRGIYQCIARR  125 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~--------------~----~~~l~~~~~~~~~~g~y~C~~~~  125 (150)
                      +..++.+.|.|.+.  +|.  ...+.|.+++..+....              .    .+.|.+..-.-.....|.|.|..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~--~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H   94 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPK--DVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGH   94 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSS--CCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEEC
T ss_pred             hccCCceEEEEEEEEeECC--CEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEe
Confidence            34567899999998  662  45999999876543211              0    23344433222234579999986


Q ss_pred             CC
Q psy11131        126 SD  127 (150)
Q Consensus       126 ~~  127 (150)
                      ..
T Consensus        95 ~s   96 (108)
T d1ow0a2          95 EA   96 (108)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00042  Score=36.15  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=25.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVS   52 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~   52 (150)
                      ..+.|.+++..|+|.|+|...+....  .+....|.|.
T Consensus        57 a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          57 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             EEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEEEe
Confidence            46899999999999999987765332  2334455543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00047  Score=36.76  Aligned_cols=58  Identities=21%  Similarity=0.338  Sum_probs=35.9

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCc---------c------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT---------S------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~---------~------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      .+..+.|.|.+.  .|.  ...+.|.++|..+....         .      .+.|.+..-.-.....|+|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~--~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPK--DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSS--CCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECC--CCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            356789999998  662  56999998876543211         0      2334443322223457999999654

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.93  E-value=0.00036  Score=36.87  Aligned_cols=58  Identities=14%  Similarity=0.328  Sum_probs=35.9

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      .+..+.|.|.+.  +|.  ...+.|..+|........             .+.|.+..-.-.....|.|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~--~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPE--DIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSS--CCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECC--CcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            456789999998  663  579999998765322110             2344443322223456999998643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00051  Score=36.26  Aligned_cols=58  Identities=9%  Similarity=0.291  Sum_probs=36.3

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      .+..+.|.|.+.  .|.  ...+.|.+++........             .+.|.+..-.-.....|.|.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~--~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPS--DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSS--CCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECC--CCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            356789999998  563  579999998865432110             2344444332233346999999754

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.88  E-value=0.00077  Score=35.84  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.++.++|+|.|.|.+..
T Consensus        70 ~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          70 YSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             EEEEECSCCGGGCSEEEEEECS
T ss_pred             eeeEehhhcccCCEeEEEEEeC
Confidence            5799999999999999997654

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.0019  Score=33.13  Aligned_cols=54  Identities=13%  Similarity=0.262  Sum_probs=34.6

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      .+..+.|.|.+.  +|.  ...+.|.++|..+.....              .+.|.+.   ..+...|.|.|...
T Consensus        14 ~~~~~~L~C~a~gFyP~--~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPA--DITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQ   83 (89)
T ss_dssp             CSSEEEEEEEEESCBSS--CCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECS
T ss_pred             CCCCEEEEEEEEeEECC--CCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEEC
Confidence            346799999998  553  678999998876543211              2333333   23344699998754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.86  E-value=0.00082  Score=35.74  Aligned_cols=30  Identities=33%  Similarity=0.478  Sum_probs=23.2

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|+....    .+|.|.++..+|+|.|.|....
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          59 PSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CcceeEeCCCCeeeecccCCccccCEEEeEecCc
Confidence            34555433    5699999999999999997654

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00046  Score=36.39  Aligned_cols=57  Identities=14%  Similarity=0.285  Sum_probs=35.6

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ...+.|.|.+.  .|.  ...+.|.+++..+.....             .+.|.+..-.-.....|.|.+....
T Consensus        18 ~~~~tL~C~v~~f~P~--~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPE--DITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSS--CCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECC--CcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            45688999998  563  679999998865432110             2344443322233457999998653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.85  E-value=0.0013  Score=34.97  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=19.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        71 ~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          71 FTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             eecEEHhheecCCceEEEEecC
Confidence            5799999999999999997654

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00086  Score=34.38  Aligned_cols=52  Identities=25%  Similarity=0.551  Sum_probs=37.7

Q ss_pred             ecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCC-CCCCceEEEEE
Q psy11131         67 HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG-REDRGIYQCIA  123 (150)
Q Consensus        67 ~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~-~~~~g~y~C~~  123 (150)
                      ..|.+|.|.|+.. .   ...+.|.+++..+.... ...|.+.... .+++|-|.|..
T Consensus        12 ISGTtV~LTCP~~-~---~~~I~Wkkn~~~i~g~~-~~~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          12 ISGTSVELTCPLD-S---DENLKWEKNGQELPQKH-DKHLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             EETTEEEEECSSC-C---CTTCEEEETTEEECSCC-CSEEEEESCCTTTSCEEEEEEC
T ss_pred             EeCCEEEEECCCC-C---CCceEEeeccccCCCCC-CcEEEEccccccccCcceEEec
Confidence            3688999999864 2   33589999988765443 3467777754 57999999963

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0012  Score=33.36  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=44.5

Q ss_pred             ecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCC-CCCceEEEEEEeCCCCceeeeEEEE
Q psy11131         67 HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGR-EDRGIYQCIARRSDGDVAQGSAELQ  138 (150)
Q Consensus        67 ~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~-~~~g~y~C~~~~~~g~~~~~~~~l~  138 (150)
                      ..|.+|.|.|+-. .   ...+.|.+++..+.....       ...|.+..... +++|.|.|.+....-.....-+.|.
T Consensus         8 ISGTtV~LTCP~~-~---~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLK   83 (91)
T d1xiwa_           8 ISGTTVILTCPQY-P---GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR   83 (91)
T ss_dssp             EETTEEEEECSSC-T---TSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEE
T ss_pred             EeCCEEEEECCCC-C---CCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCCCCCCcceEEEEE
Confidence            3688999999743 3   456999998876543211       34677776654 6899999987532211223345565


Q ss_pred             EcC
Q psy11131        139 LGG  141 (150)
Q Consensus       139 v~~  141 (150)
                      ..+
T Consensus        84 ARV   86 (91)
T d1xiwa_          84 ARV   86 (91)
T ss_dssp             ECC
T ss_pred             eEe
Confidence            544

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.002  Score=33.88  Aligned_cols=58  Identities=12%  Similarity=0.211  Sum_probs=36.8

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+..+.|.|.+.  .|.  ...+.|..++........           .+.|.+..-.- ..+.|.|.+.....
T Consensus        19 ~~~~~tl~Cl~~gf~P~--~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPE--PVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKS   89 (101)
T ss_dssp             TCSEEEEEEEEEEEBSS--CCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEeCC--CCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCC
Confidence            467899999998  553  679999877654221100           34455543332 35689999997544

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00094  Score=35.78  Aligned_cols=29  Identities=21%  Similarity=0.362  Sum_probs=23.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      +|+.+..      ..|+|.+++.+|+|.|.|....
T Consensus        59 gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~   93 (110)
T d1u9ka_          59 GKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYH   93 (110)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cEEEEEEECCCCEEEEEECccccCCCEEEEEEEeC
Confidence            4666653      3589999999999999998644

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.78  E-value=0.0015  Score=35.09  Aligned_cols=22  Identities=41%  Similarity=0.703  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.+++.+|+|.|.|....
T Consensus        79 ~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          79 PFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeecccCCCCCcEEEEeEcC
Confidence            4699999999999999997653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.0006  Score=36.00  Aligned_cols=57  Identities=9%  Similarity=0.232  Sum_probs=36.0

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ...+.|.|.+.  .|.  ...+.|..++........             .+.|.+....-.....|+|.|....
T Consensus        19 ~~~~~L~C~v~~f~P~--~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPP--DIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSS--CCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECC--CCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            45688999998  662  579999998865432111             2334444433234457999998653

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.0015  Score=34.66  Aligned_cols=29  Identities=34%  Similarity=0.446  Sum_probs=22.3

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .++....    ..|.|.++..+|+|.|.|....
T Consensus        59 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          59 ARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSW   91 (106)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CceeeecCCCEEEeEECCcChhhCCCccccccc
Confidence            4454443    5799999999999999996543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.74  E-value=0.00085  Score=36.17  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          73 FHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecccccccccceecccccC
Confidence            5799999999999999997653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0021  Score=34.07  Aligned_cols=58  Identities=19%  Similarity=0.366  Sum_probs=35.8

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc---------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ...+.|.|.+.  .|.  ...+.|..++..+.....               .+.|.+..-.-.....|.|.+.....
T Consensus        20 ~~~~~L~Clv~~f~P~--~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPR--EAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSS--CCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeeCC--CCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            56789999998  662  468999998765432110               23444433222334479999997543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.73  E-value=0.0026  Score=34.21  Aligned_cols=22  Identities=23%  Similarity=0.187  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++.++|+|.|.|.+..
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          73 FHLQKSSAQLSDSALYYCALFL   94 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEeeccccccccCccceEEEEc
Confidence            4699999999999999997654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.72  E-value=0.001  Score=35.45  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        71 ~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          71 YSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             EEEEEhhhcccCCeEEEEecCc
Confidence            5799999999999999997654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00051  Score=36.52  Aligned_cols=37  Identities=5%  Similarity=-0.007  Sum_probs=26.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST   53 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   53 (150)
                      ..|.|.....+|.|.|+|+|.|..+.......+.+.+
T Consensus        63 s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~~~s~   99 (106)
T d1zxqa1          63 ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSA   99 (106)
T ss_dssp             EEEEEECCGGGGGCEEEEEEEEECGGGTCCEEEEECC
T ss_pred             EEEEEeeehhcCCcEEEEEEEecCCCCCCeeEecccC
Confidence            3477777777888899999999876554444555544

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.70  E-value=0.0017  Score=33.64  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.++..+|+|.|.|.+..
T Consensus        57 ~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1          57 VSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             EEEEECSCCGGGCEEEEEEEES
T ss_pred             EeEEeeccccCcCccceeeEec
Confidence            4699999999999999998654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.70  E-value=0.0011  Score=35.73  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .+|.|.++..+|+|.|.|.+...
T Consensus        72 ~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          72 SSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             EEEEECSCCGGGCSEEEEEEECS
T ss_pred             cccEEcccChhhCcccceeeecC
Confidence            56999999999999999987653

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.69  E-value=0.0028  Score=32.93  Aligned_cols=54  Identities=15%  Similarity=0.409  Sum_probs=34.7

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      +..+.|.|.+.  .|.  ...+.|.+++..+.....             .+.|.+.   ..+...|+|.+....
T Consensus        16 ~~~vtL~C~a~gF~P~--~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPK--PVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             TTEEEEEEEEEEEBSS--CEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CCeEEEEEEEEEEECC--CcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            45689999998  672  459999988765432211             2334443   344557999998643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.69  E-value=0.002  Score=34.51  Aligned_cols=29  Identities=38%  Similarity=0.456  Sum_probs=22.7

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|+....    ..|+|.++..+|++.|.|....
T Consensus        64 ~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          64 ARFSGSGSGTDFTLNIHPVEEEDAATYYCSHIR   96 (111)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CcEEEecCCCchhcccccccccCCceEEEEECC
Confidence            4555443    5799999999999999997554

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.69  E-value=0.00016  Score=38.46  Aligned_cols=58  Identities=14%  Similarity=0.252  Sum_probs=35.1

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      +..+.|.|.+.  .|.  ...+.|.+++..+.....             .+.|.+....-.+...|+|.+.....
T Consensus        20 ~~~~~l~C~~~gf~P~--~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          20 TNKATLVCLVNDFYPG--SATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             TTEECCCEEEEEEBSS--CCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             CCcEEEEEEEEEeeCC--CCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            55688999998  552  469999998876542211             12222222221234579999997544

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.66  E-value=0.0017  Score=34.52  Aligned_cols=29  Identities=34%  Similarity=0.436  Sum_probs=22.7

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|+....    ..|.|.++..+|++.|.|.+..
T Consensus        60 ~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          60 DRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCeeecCCCCeeeeeechhheecceeEEEeECC
Confidence            4555543    5699999999999999997553

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.65  E-value=0.0052  Score=31.71  Aligned_cols=56  Identities=16%  Similarity=0.355  Sum_probs=33.9

Q ss_pred             CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS------------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~------------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      +..+.|.|.+.  +|.  ...+.|.+++..+.....            ......-.+...+...|.|.+...
T Consensus        15 ~~~~~L~C~~~gFyP~--~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1hyrc1          15 EGNITVTCRASGFYPW--NITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHS   84 (94)
T ss_dssp             SSEEEEEEEEEEEBSS--CCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEET
T ss_pred             CCCEEEEEEEEEEECC--CcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEEC
Confidence            34588999998  663  679999998876542211            111111122333445699999853

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.64  E-value=0.0027  Score=33.89  Aligned_cols=29  Identities=34%  Similarity=0.463  Sum_probs=22.6

Q ss_pred             CCceEEeC-----CeEEEcCCCCCCCeEEEEEec
Q psy11131          9 GPRTRVLG-----PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus         9 ~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      +.++....     ..|.|.++..+|+|.|.|.+.
T Consensus        60 ~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~   93 (111)
T d2esve1          60 NNRFLAERTGGTYSTLKVQPAELEDSGVYFCASS   93 (111)
T ss_dssp             STTEEEECTTSSSEEEEESSCCGGGCEEEEEEEE
T ss_pred             CccEEEEcCCCCEEEEEECCcccCCCceEEEeee
Confidence            35555543     469999999999999999754

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.0016  Score=34.85  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=22.8

Q ss_pred             CceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|+....    ..|.|.++..+|+|.|.|....
T Consensus        62 ~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          62 ARFSGSLIGNKAALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             eeeeecccccceeeecCCCCccccEeEEEEccc
Confidence            4555433    6799999999999999997653

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00085  Score=36.13  Aligned_cols=30  Identities=23%  Similarity=0.333  Sum_probs=23.4

Q ss_pred             CCceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131          9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus         9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|+....    ..|.|.++..+|+|.|.|.+..
T Consensus        65 ~~rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          65 TQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             TTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEECCCCChhcEEccCCCCCCEEEeEeEcC
Confidence            34555544    4699999999999999998653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.63  E-value=0.001  Score=35.71  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .+|.|.++..+|+|.|.|.+...
T Consensus        74 ~~L~I~~~~~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          74 FNFTITASQVVDSAVYFCALSGF   96 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECS
T ss_pred             EEEeecccccccCCCceEeCCCC
Confidence            46999999999999999976543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.63  E-value=0.0039  Score=33.26  Aligned_cols=22  Identities=41%  Similarity=0.584  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|+|.++..+|+|.|.|.+..
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          73 STLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCCCcCCCEEEEEeeeC
Confidence            4699999999999999997653

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.63  E-value=0.0016  Score=34.53  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        70 ~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          70 FTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             EEEEEESCCGGGCSEEEEEEEC
T ss_pred             EEEEEccccccCCCcEeeeeCC
Confidence            5699999999999999997543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.60  E-value=0.0023  Score=33.96  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.++..+|+|.|.|....
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          71 YSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEccccccCCcCCEEEEeeecc
Confidence            5799999999999999997554

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.57  E-value=0.0057  Score=32.37  Aligned_cols=59  Identities=15%  Similarity=0.221  Sum_probs=37.4

Q ss_pred             EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ...+..+.|.|.+.  .|.  ...+.|.+++..+.....             .+.|.+..-.-  ...|.|.+.....
T Consensus        21 ~~~~~~~~l~Clv~~f~P~--~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~   94 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPD--VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENN   94 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSC--CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTS
T ss_pred             HccCCcEEEEEEEeEEeCC--ceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCC
Confidence            44567799999998  663  678999998875532211             23444433221  2369999997654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.57  E-value=0.0015  Score=34.53  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=18.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .+|.|.++..+|+|.|.|...
T Consensus        69 ~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          69 YSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEecccCcccCCeEEEEec
Confidence            569999999999999999654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.53  E-value=0.0028  Score=33.74  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        71 ~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          71 FTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             EEEEECSCCTTCCSEEEEEECS
T ss_pred             EEeEeeeeEeccceEEEEeeCC
Confidence            4799999999999999997554

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.53  E-value=0.003  Score=33.62  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..|.|.++..+|+|.|.|.+.
T Consensus        69 ~~L~I~~~~~~Dsa~YyCa~~   89 (110)
T d2esvd1          69 STLILPHATLRDTAVYYCIVV   89 (110)
T ss_dssp             EEEEESSCCGGGCEEEEEEEE
T ss_pred             eeehhcccccCCceEEEEEEe
Confidence            569999999999999999764

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.51  E-value=0.0054  Score=31.93  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             CcEEEEEEec--CCCCCCcEEEEeecCccc
Q psy11131         70 GSANFQCEIT--PYDSGPYLIAWFKDGRQI   97 (150)
Q Consensus        70 ~~~~l~C~~~--~p~~~~~~~~w~~~~~~~   97 (150)
                      ..+.|.|.+.  +|.  ...+.|.+++..+
T Consensus        15 ~~vtL~C~~~gFyP~--~I~v~W~~ng~~~   42 (98)
T d1u58a1          15 GGMRLRCFARDYYPA--DLEIRWWKDDGGG   42 (98)
T ss_dssp             SCEEEEEEEEEEBSS--CEEEEEEEECSSS
T ss_pred             CcEEEEEEEEEEcCC--CCEEEEEECCccc
Confidence            4688999998  663  6799999887643

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.51  E-value=0.0025  Score=34.05  Aligned_cols=22  Identities=41%  Similarity=0.640  Sum_probs=19.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        75 ~~L~I~~~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          75 FTLIIDPVEADDVATYYCQQTN   96 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEcccccccCccEEEeecC
Confidence            5799999999999999997654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.50  E-value=0.0015  Score=35.15  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.++..+|+|.|.|.+..
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~   94 (115)
T d1fo0a_          73 IGLIITATQIEDSAVYFCAMRG   94 (115)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCccccccccceeec
Confidence            4599999999999999998654

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.49  E-value=0.0019  Score=34.68  Aligned_cols=21  Identities=43%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..|.|.++..+|+|.|.|...
T Consensus        77 ~~L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          77 FTLTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EeEEecccccCCCeEEEeccc
Confidence            469999999999999999754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.49  E-value=0.003  Score=33.62  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        73 ~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          73 YTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             eEEEEeeceeCcCceEEEeecC
Confidence            4699999999999999997654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.49  E-value=0.0017  Score=34.53  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|+|.++..+|+|.|.|....
T Consensus        71 ~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          71 FTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             EEEEeccceeCcCceEEEEECc
Confidence            5699999999999999996553

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.47  E-value=0.0018  Score=34.41  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        72 ~~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          72 FTLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             EEEEehHheecccEEEeeecCC
Confidence            4699999999999999997653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.45  E-value=0.0022  Score=34.33  Aligned_cols=23  Identities=39%  Similarity=0.615  Sum_probs=19.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .+|.|.++..+|+|.|.|.+...
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (113)
T d1h5ba_          71 STLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECS
T ss_pred             eEEEECCCCHhHCEEEEEEecCC
Confidence            46999999999999999986543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.42  E-value=0.0037  Score=33.32  Aligned_cols=22  Identities=27%  Similarity=0.606  Sum_probs=19.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.++..+|+|.|.|....
T Consensus        72 ~~L~I~~~~~~Dsa~YyCA~~~   93 (111)
T d1rzfl1          72 ATLGITGLQTGDEADYYCGTWD   93 (111)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEE
T ss_pred             eeeEEeeeccccCcceEEeecC
Confidence            5799999999999999997653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.41  E-value=0.0034  Score=33.71  Aligned_cols=22  Identities=41%  Similarity=0.723  Sum_probs=19.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|++.|.|....
T Consensus        72 ~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          72 ASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeEecccCcccCceEEEeecC
Confidence            5799999999999999997653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.37  E-value=0.0026  Score=34.18  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          73 FHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEESS
T ss_pred             EEEeeccccccCCccceeeecCC
Confidence            46999999999999999987643

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0058  Score=30.58  Aligned_cols=61  Identities=25%  Similarity=0.318  Sum_probs=37.6

Q ss_pred             CCcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131         69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL  137 (150)
Q Consensus        69 g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l  137 (150)
                      |..+.|.|...+    ...+.|.+++..- .......+.+.--...++|.|+|. .  .|...+.++.|
T Consensus        21 ~~~V~L~C~t~e----E~~I~W~kd~~se-~~~~GntltV~VkE~~~aGnYTCh-k--~g~~Lnht~lL   81 (87)
T d3d85d1          21 GEMVVLTCDTPE----EDGITWTLDQSSE-VLGSGKTLTIQVKEFGDAGQYTCH-K--GGEVLSHSLLL   81 (87)
T ss_dssp             CEEEEEECSSSC----CSSCEEEETTCCC-CCEESSEEEEEECSGGGCEEEEEE-E--TTEEEEEEEEE
T ss_pred             ccEEEEecCCCc----ccccEEeeCCccc-cccCCCEEEEEEEeccCCcceeEe-C--CCcEeeeEEEE
Confidence            456889997652    2258999986652 112245666666566789999997 3  25334444433

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.33  E-value=0.0034  Score=33.38  Aligned_cols=22  Identities=41%  Similarity=0.659  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        69 ~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          69 ATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEE
T ss_pred             eeeeEcCccccCCceEEEEeec
Confidence            5799999999999999997653

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.30  E-value=0.0037  Score=33.29  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          71 FSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEccccccCCeeEEEeeeC
Confidence            5699999999999999997653

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.28  E-value=0.0047  Score=32.97  Aligned_cols=23  Identities=43%  Similarity=0.650  Sum_probs=19.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      ..|.|.+++.+|+|.|.|.....
T Consensus        73 ~~L~I~~l~~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          73 ASLTISGLQAEDEADYYCSSYDG   95 (112)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECS
T ss_pred             eeEEeCcCccccCEEEEEeeecC
Confidence            56999999999999999976543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.28  E-value=0.0046  Score=33.10  Aligned_cols=22  Identities=41%  Similarity=0.554  Sum_probs=19.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.++..+|+|.|.|....
T Consensus        77 ~~L~I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          77 FTLKISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             ccCccCCCCcccCEEEEEEECC
Confidence            5799999999999999996543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0013  Score=35.89  Aligned_cols=20  Identities=30%  Similarity=0.629  Sum_probs=18.4

Q ss_pred             eEEEcCCCCCCCeEEEEEec
Q psy11131         18 ILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      +|+|.++..+|+|.|.|.+.
T Consensus        83 ~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          83 VLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEcccccCCCEEEEeeEe
Confidence            69999999999999999764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.26  E-value=0.0036  Score=33.47  Aligned_cols=22  Identities=41%  Similarity=0.549  Sum_probs=19.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        76 ~~L~I~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          76 FTLKISRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEECccccCcCEeEEEEcCC
Confidence            4699999999999999996543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.24  E-value=0.0028  Score=33.30  Aligned_cols=22  Identities=41%  Similarity=0.689  Sum_probs=19.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        68 ~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          68 VTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEE
T ss_pred             cCceEcCcchhHCceEEeeecC
Confidence            5799999999999999996543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.23  E-value=0.0088  Score=31.92  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.++..+|+|.|.|....
T Consensus        72 ~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          72 FPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             CCEEECSCCSCCCEEEEEEEES
T ss_pred             EEEEECcCCcCCceeEEEeecc
Confidence            5699999999999999997654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.20  E-value=0.012  Score=31.49  Aligned_cols=60  Identities=20%  Similarity=0.391  Sum_probs=39.4

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC----------cc----------eeeEEEccCCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR----------TS----------STSLVINPVGRED  115 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~----------~~----------~~~l~~~~~~~~~  115 (150)
                      .+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      ...          .+          ...|.++.+..+|
T Consensus        11 lvkPg~sl~LsC~~SG~~~-~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSF-DDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             EECTTSCEEEEEEEESSCS-TTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEeeecC-CCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            567799999999987 320 0446777653  2211      000          00          3468889999999


Q ss_pred             CceEEEEEEe
Q psy11131        116 RGIYQCIARR  125 (150)
Q Consensus       116 ~g~y~C~~~~  125 (150)
                      .+.|.|....
T Consensus        90 tAvYyCAr~~   99 (116)
T d7fabh1          90 TAVYYCARNL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeeeec
Confidence            9999997653

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.02  Score=29.49  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=25.6

Q ss_pred             CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccC
Q psy11131          8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus         8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .+..+..+. ..+.|.++...+.|.|.|.+...
T Consensus        49 ~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          49 DGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             CSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            334555555 67999999999999999999765

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0029  Score=31.82  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=25.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEE
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQV   51 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v   51 (150)
                      ..|.+..+-.+|.|.|+|.+....+. .+.++.+.|
T Consensus        68 FvLhF~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          68 FVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEeeeeeecCCCceEEecCCChhheecceEEEEe
Confidence            35899999999999999998865554 333444443

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.10  E-value=0.023  Score=30.56  Aligned_cols=62  Identities=16%  Similarity=0.387  Sum_probs=40.0

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc------CCC----------cc----------eeeEEEccCCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI------PGR----------TS----------STSLVINPVGRE  114 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~------~~~----------~~----------~~~l~~~~~~~~  114 (150)
                      ..+..|+++.|.|.+. .. ...-.+.|++..  +.+      ...          .+          ...|.+..+..+
T Consensus         9 ~~vkPg~sl~LsC~~SG~~-~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNT-LCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             EEECTTCCEEEEEEEESCT-TCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCC-ccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence            3567899999999987 33 004456776532  111      000          00          346899999999


Q ss_pred             CCceEEEEEEeC
Q psy11131        115 DRGIYQCIARRS  126 (150)
Q Consensus       115 ~~g~y~C~~~~~  126 (150)
                      |...|.|.....
T Consensus        88 DtA~YYCAr~~~   99 (119)
T d1kxvc_          88 DTAMYYCKPSLR   99 (119)
T ss_dssp             GCEEEEEEEEES
T ss_pred             CcceEeeeeccc
Confidence            999999976543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.07  E-value=0.005  Score=32.82  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      ..|.|.++..+|+|.|.|-+...
T Consensus        71 ~~L~i~~~~~~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          71 FPLTLESARPSHTSQYLCASSEN   93 (112)
T ss_dssp             CCEEBSSCCTTTCSEEEEEEECS
T ss_pred             eEeeeccccccccccEEEEEecC
Confidence            56999999999999999976543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.031  Score=29.05  Aligned_cols=60  Identities=17%  Similarity=0.266  Sum_probs=35.6

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCC---------cc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR---------TS---STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~---------~~---~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .++.+.|.|.+.  .|.. ...+.|.+++..+...         ..   .+.|.+....-.....|+|.|.....
T Consensus        18 ~~~~v~L~Clv~gF~P~~-~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSG-TMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCC-CEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCC-cEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            467799999998  5510 2466777766543211         00   34555554443344579999987544

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.06  E-value=0.021  Score=30.58  Aligned_cols=62  Identities=23%  Similarity=0.457  Sum_probs=40.2

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-C----------cc----------eeeEEEccC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-R----------TS----------STSLVINPV  111 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-~----------~~----------~~~l~~~~~  111 (150)
                      ....+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      .. .          .+          ...|.+.++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~-~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL   85 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYT-LTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSL   85 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCC-CSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcccc-CCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccccc
Confidence            345677899999999987 33 00446777653  2111      00 0          00          246888999


Q ss_pred             CCCCCceEEEEEE
Q psy11131        112 GREDRGIYQCIAR  124 (150)
Q Consensus       112 ~~~~~g~y~C~~~  124 (150)
                      ..+|...|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1um5h1          86 TSEDSAVYYCARS   98 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999754

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.06  E-value=0.017  Score=31.24  Aligned_cols=63  Identities=16%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPV  111 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~  111 (150)
                      ....+..|+.+.|.|.+. .. .....+.|++.  ++.+      ...           .+          ...|.|+++
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~-~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L   86 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFN-IKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL   86 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSC-GGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEecCC-CCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccccc
Confidence            334577899999999976 32 00345667553  2111      000           00          235888999


Q ss_pred             CCCCCceEEEEEEe
Q psy11131        112 GREDRGIYQCIARR  125 (150)
Q Consensus       112 ~~~~~g~y~C~~~~  125 (150)
                      ..+|.+.|.|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (121)
T d1j05b_          87 TSEDTAVYYCAPFG  100 (121)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             CcCcceEEEeEeec
Confidence            99999999997653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.06  E-value=0.0048  Score=33.26  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        77 ~~L~i~~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          77 STLTVTSAHPEDSGFYVCSALA   98 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccccccccccccCceEEEEEec
Confidence            3599999999999999997654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.04  E-value=0.0055  Score=32.70  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          73 FSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEC
T ss_pred             eeeEeccCccCCcccEEeeEcc
Confidence            5799999999999999997654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.02  E-value=0.0052  Score=32.96  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.++..+|+|.|.|....
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (115)
T d1ogad1          71 SSLHITAAQPGDTGLYLCAGAG   92 (115)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEC
T ss_pred             eeeeecCCCccceeeEcccccC
Confidence            5799999999999999997654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.01  E-value=0.0075  Score=32.17  Aligned_cols=21  Identities=43%  Similarity=0.591  Sum_probs=18.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..|.|.++..+|++.|.|...
T Consensus        76 ~~L~Is~~~~~DsAvYyCa~~   96 (112)
T d1mjul1          76 FTLRISRVEAEDVGVYYCLQH   96 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEECCccccCCceEEEEeC
Confidence            569999999999999999543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0043  Score=32.57  Aligned_cols=63  Identities=13%  Similarity=0.334  Sum_probs=35.6

Q ss_pred             EEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         65 SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      .+..+..+.|.|.+.  .|......+.|.+++........             .+.|.+..-.-.....|.|.+....
T Consensus        12 ~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          12 DLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            344577789999997  55211246778777655432211             2233333222223457999999754

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.00  E-value=0.0023  Score=35.11  Aligned_cols=58  Identities=16%  Similarity=0.313  Sum_probs=36.5

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCC---------------c-c---eeeEEEccCCCCCCc-eEEEEEE
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR---------------T-S---STSLVINPVGREDRG-IYQCIAR  124 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~---------------~-~---~~~l~~~~~~~~~~g-~y~C~~~  124 (150)
                      ..+..+.|.|.+.  .|.  ...+.|.+++..+...               . .   .+.|.+....=.+.| .|.|.|.
T Consensus        18 ~~~~~~tL~C~v~gf~P~--~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~   95 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPD--HVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ   95 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSS--CEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEE
T ss_pred             ccCCcEEEEEEEEeccCC--CeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEE
Confidence            3456789999998  553  6789999887654321               0 0   234555443323445 6999998


Q ss_pred             eC
Q psy11131        125 RS  126 (150)
Q Consensus       125 ~~  126 (150)
                      ..
T Consensus        96 H~   97 (127)
T d1ogae2          96 FY   97 (127)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.99  E-value=0.014  Score=31.46  Aligned_cols=62  Identities=16%  Similarity=0.348  Sum_probs=39.4

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-----------Ccc----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-----------RTS----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-----------~~~----------~~~l~~~~~~  112 (150)
                      ...+..|+.+.|.|.+. .. .....+.|++.  |+.+      ..           ..+          ...|.+..+.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s-~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~   87 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYS-FTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLT   87 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEEcccc-CCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccC
Confidence            34567899999999986 32 00345677653  2211      00           000          2358888999


Q ss_pred             CCCCceEEEEEEe
Q psy11131        113 REDRGIYQCIARR  125 (150)
Q Consensus       113 ~~~~g~y~C~~~~  125 (150)
                      .+|...|.|....
T Consensus        88 ~eDtA~YYCAr~~  100 (120)
T d1pg7x1          88 SNDSAVYYCARED  100 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCcceEEEeeecC
Confidence            9999999998653

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.98  E-value=0.015  Score=31.36  Aligned_cols=60  Identities=13%  Similarity=0.327  Sum_probs=37.9

Q ss_pred             EEecCCcEEEEEEec-CC-CCCCcEEEEeec--CcccC----------------CCcc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PY-DSGPYLIAWFKD--GRQIP----------------GRTS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~--~~~~~----------------~~~~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. .. ......+.|++.  +..+.                ...+          ...|.|..+..+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            356799999999875 21 100346778753  21110                0001          356899999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |.+.|.|-..
T Consensus        91 DsAvYyCAr~  100 (120)
T d2agjh1          91 DTATYYCART  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeEec
Confidence            9999999744

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.97  E-value=0.0028  Score=33.93  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        74 ~~L~I~~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          74 SEMNMSALELEDSAMYFCASSL   95 (113)
T ss_dssp             EEEECCSCCGGGCEEECEEEES
T ss_pred             EEEEecccCcCCceeEEEEeec
Confidence            4699999999999999997643

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.96  E-value=0.0048  Score=32.91  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          72 SEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEES
T ss_pred             eEEEECCCCcccceeeeeeeeC
Confidence            4699999999999999997653

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=95.95  E-value=0.023  Score=30.41  Aligned_cols=59  Identities=20%  Similarity=0.416  Sum_probs=38.8

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC----------Ccc----------eeeEEEccCCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG----------RTS----------STSLVINPVGRED  115 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~----------~~~----------~~~l~~~~~~~~~  115 (150)
                      .+..|+++.|.|.+. ..- ..-.+.|.+.  |+.+      ..          ..+          ...|.++++..+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~-~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSL-TGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             EECTTSCEEEEEEEESSCT-TSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEccccc-CCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            467899999999987 320 1456777653  2211      00          000          2468899999999


Q ss_pred             CceEEEEEE
Q psy11131        116 RGIYQCIAR  124 (150)
Q Consensus       116 ~g~y~C~~~  124 (150)
                      .+.|.|...
T Consensus        90 TAvYYCAr~   98 (116)
T d1a2yb_          90 TARYYCARE   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEe
Confidence            999999754

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.94  E-value=0.0064  Score=31.89  Aligned_cols=60  Identities=12%  Similarity=0.246  Sum_probs=34.2

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      .+....|.|.+.  .|......+.|..++..+.....             .+.|.+..-.=...-.|.|.|....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            456688999997  55211358899988775432211             2233332211112345999999654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.94  E-value=0.023  Score=31.03  Aligned_cols=63  Identities=13%  Similarity=0.264  Sum_probs=40.4

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPV  111 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~  111 (150)
                      ....+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ...           .+          ...|.+..+
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~-~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L   85 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGT-FSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL   85 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSC-CTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEEeCCC-ccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc
Confidence            334567899999999997 32 01446777653  2111      000           00          245888899


Q ss_pred             CCCCCceEEEEEEe
Q psy11131        112 GREDRGIYQCIARR  125 (150)
Q Consensus       112 ~~~~~g~y~C~~~~  125 (150)
                      ..+|.+.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          86 RSDDTAVYYCARDF   99 (130)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCcEEEEEEeec
Confidence            99999999997653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0054  Score=31.78  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=19.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..+.|.+++..|+|.|+|...
T Consensus        57 a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1          57 GQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             TEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEEecCHHHCCeEEEEEe
Confidence            579999999999999999864

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.90  E-value=0.008  Score=32.23  Aligned_cols=60  Identities=23%  Similarity=0.459  Sum_probs=39.1

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCCC-----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPGR-----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~~-----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. ..- ..-.+.|.+.  ++.      +...           .+          ...|.+.++..
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~-~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNI-KEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCG-GGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCC-cCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            4567899999999997 330 0446777653  111      1100           00          24588889999


Q ss_pred             CCCceEEEEEE
Q psy11131        114 EDRGIYQCIAR  124 (150)
Q Consensus       114 ~~~g~y~C~~~  124 (150)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jpth1          89 EDTAVYYCARD   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeec
Confidence            99999999654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.90  E-value=0.001  Score=34.64  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEeccC
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      .+|.|.+++++|+|.|.|-+...
T Consensus        64 ~~L~I~~~~~~Dsa~YyCA~~~~   86 (96)
T d1ymmd1          64 SSLLITASRAADTASYFCATDTT   86 (96)
T ss_dssp             CCBCCSSCCSTTCSCCEEEEEET
T ss_pred             cccCcCCCCcccCEEEeEeEecC
Confidence            46999999999999999976543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=95.90  E-value=0.0025  Score=34.18  Aligned_cols=22  Identities=41%  Similarity=0.644  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|+|.+++.+|+|.|.|.+..
T Consensus        66 ~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          66 FSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeeeecccccCCcceEeeeeec
Confidence            3699999999999999998753

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.89  E-value=0.0048  Score=32.77  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        74 ~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          74 FSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCHhhCEEEEEeeCC
Confidence            5689999999999999997653

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.0014  Score=35.62  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        71 ~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          71 YTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             EEEEECSCCGGGCSEEEEEEES
T ss_pred             EEEEcccCccCCCeEEEeeccC
Confidence            4699999999999999997543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.89  E-value=0.0068  Score=32.29  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..|.|.++..+|+|.|.|...
T Consensus        72 ~~L~I~~~~~~DsavYyCA~~   92 (112)
T d2bnub1          72 FPLRLLSAAPSQTSVYFCASS   92 (112)
T ss_dssp             CCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEeec
Confidence            479999999999999999764

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.88  E-value=0.041  Score=28.78  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=16.8

Q ss_pred             eeEEEccCCCCCCceEEEEEEeCC
Q psy11131        104 TSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus       104 ~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ..|.++++..+|.+.|.|......
T Consensus        66 ~~L~~~sL~~eDTAvYYCAr~~~~   89 (103)
T d1oari_          66 AYMQLSSLTSEDSAVYYCARMWYY   89 (103)
T ss_dssp             EEEEECCC---CCSEEEEEEEECS
T ss_pred             EEeeeeeccccccEEEEeEEECCC
Confidence            468899999999999999765443

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.88  E-value=0.013  Score=31.41  Aligned_cols=61  Identities=18%  Similarity=0.427  Sum_probs=38.5

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-----------Ccc----------eeeEEEccC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-----------RTS----------STSLVINPV  111 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-----------~~~----------~~~l~~~~~  111 (150)
                      ....+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ..           ..+          ...|.+.++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s-~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L   86 (117)
T d1mfah1           8 GTVVARPGASVKMSCKASGYT-FTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSL   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSC-GGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcccC-CCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeeccc
Confidence            345567899999999987 32 00345666542  2211      00           000          246888999


Q ss_pred             CCCCCceEEEEE
Q psy11131        112 GREDRGIYQCIA  123 (150)
Q Consensus       112 ~~~~~g~y~C~~  123 (150)
                      ..+|.+.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (117)
T d1mfah1          87 TSEDSAVYYCTR   98 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEec
Confidence            999999999964

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.87  E-value=0.034  Score=29.92  Aligned_cols=60  Identities=22%  Similarity=0.413  Sum_probs=38.2

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCCc-----------c----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGRT-----------S----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~~-----------~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. .....+.|.+.  ++.+      ....           +          ...|.+.++..
T Consensus        10 ~lvkPg~sl~LsC~~SG~s-~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYA-YTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             EEEETTCCEEEEEEEESCS-SCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCC-cccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            3567899999999987 32 01456667553  1110      0000           0          24588889999


Q ss_pred             CCCceEEEEEE
Q psy11131        114 EDRGIYQCIAR  124 (150)
Q Consensus       114 ~~~g~y~C~~~  124 (150)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d2p49b1          89 EDTATYYCAAG   99 (121)
T ss_dssp             GGCEEEEEEES
T ss_pred             cceeEEeeecc
Confidence            99999999754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=95.86  E-value=0.021  Score=30.66  Aligned_cols=61  Identities=20%  Similarity=0.400  Sum_probs=39.0

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~~  112 (150)
                      ...+..|+++.|.|.+. .. ...-.+.|.+.  |+.+      ...           .+          ...|.+.++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~-~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFT-FSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSC-STTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcccc-CCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            34577899999999987 22 01346667542  2111      000           00          3468888999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|.+.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=95.86  E-value=0.0035  Score=33.56  Aligned_cols=22  Identities=45%  Similarity=0.690  Sum_probs=19.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|+|.++..+|+|.|.|.+..
T Consensus        65 ~~L~I~~l~~~Dsa~YyCA~~~   86 (112)
T d1sq2n_          65 FSLRINDLTVEDGGTYRCGLGV   86 (112)
T ss_dssp             EEEEECSCCGGGCEEEEEEECB
T ss_pred             eeeEecCCcCccCEEEeEEEec
Confidence            3799999999999999997654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.85  E-value=0.019  Score=31.09  Aligned_cols=60  Identities=27%  Similarity=0.460  Sum_probs=38.9

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-C----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-R----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-~----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      .. .          .+          ...|.++.+..
T Consensus         9 ~lvkpg~sl~LsC~~SG~~-~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGST-DSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             EECCTTCCEEEEEEEESCS-TTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCcc-cccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            3466799999999997 32 00456778653  2111      00 0          00          24688889999


Q ss_pred             CCCceEEEEEE
Q psy11131        114 EDRGIYQCIAR  124 (150)
Q Consensus       114 ~~~g~y~C~~~  124 (150)
                      +|.+.|.|...
T Consensus        88 eDtAvYYCAr~   98 (124)
T d1zvya1          88 EDTAIYTCGAT   98 (124)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEeec
Confidence            99999999764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.84  E-value=0.003  Score=33.55  Aligned_cols=21  Identities=38%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .+|.|.++..+|+|.|.|.+.
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~   91 (110)
T d1u3ha1          71 LSLHIADSQPGDSATYFCAAS   91 (110)
T ss_dssp             EEEEESSCCTTSCSEEEECCE
T ss_pred             eEeEeccCCCCCceeEeeeec
Confidence            469999999999999999754

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.84  E-value=0.019  Score=30.91  Aligned_cols=58  Identities=17%  Similarity=0.451  Sum_probs=37.4

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC----------Ccc----------eeeEEEccCCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG----------RTS----------STSLVINPVGRED  115 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~----------~~~----------~~~l~~~~~~~~~  115 (150)
                      .+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ..          ..+          ...|.|.++..+|
T Consensus        11 ~vkPG~sl~LsC~~SG~~-~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGS-FSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             EECTTSCEEEEEEEESSC-CSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEcccc-CccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            467899999999987 33 00345667653  2111      00          001          2458899999999


Q ss_pred             CceEEEEE
Q psy11131        116 RGIYQCIA  123 (150)
Q Consensus       116 ~g~y~C~~  123 (150)
                      .+.|.|..
T Consensus        90 tA~YYCAr   97 (120)
T d1dn0b1          90 TAVYYCAR   97 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999943

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.83  E-value=0.012  Score=31.54  Aligned_cols=61  Identities=20%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCCC--c---------c----------eeeEEEccC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPGR--T---------S----------STSLVINPV  111 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~~--~---------~----------~~~l~~~~~  111 (150)
                      ....+..|+++.|.|.+. ..- ..-.+.|.+.  ++.      +...  .         +          ...|.++++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~-~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL   86 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTF-TTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL   86 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCG-GGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCC-CCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence            334577899999999987 430 0346777653  221      1100  0         0          236888899


Q ss_pred             CCCCCceEEEEE
Q psy11131        112 GREDRGIYQCIA  123 (150)
Q Consensus       112 ~~~~~g~y~C~~  123 (150)
                      ..+|.+.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (118)
T d2jelh1          87 TSEDSAIYYCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceeeeEEE
Confidence            999999999954

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0094  Score=31.20  Aligned_cols=58  Identities=14%  Similarity=0.287  Sum_probs=35.3

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCC--------cc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR--------TS----STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~--------~~----~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      .+..+.|.|.+.  .|.  ...+.|..++......        ..    .+.|.+..-.- ....|.|.+....+
T Consensus        19 ~~~~~tl~Cl~~~f~P~--~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~   90 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPE--PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPS   90 (103)
T ss_dssp             ETTEEEEEEEEEEEBSS--CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEeEeCC--CeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCC
Confidence            356789999998  663  6799997766432110        00    24455543322 23469999997654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.77  E-value=0.011  Score=31.64  Aligned_cols=59  Identities=24%  Similarity=0.384  Sum_probs=36.8

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCCC-----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPGR-----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~~-----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. ...-.+.|++.  ++.      +...           .+          ...|.|+++..
T Consensus        10 ~~~kPG~sl~LsC~~SG~s-~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYS-FIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEEcccc-CCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            3567899999999976 32 00334566542  111      1000           00          24588999999


Q ss_pred             CCCceEEEEE
Q psy11131        114 EDRGIYQCIA  123 (150)
Q Consensus       114 ~~~g~y~C~~  123 (150)
                      +|...|.|-.
T Consensus        89 eDtAvYYCAr   98 (115)
T d1f3dh1          89 EDSAVYYCAN   98 (115)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999999954

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.77  E-value=0.015  Score=31.21  Aligned_cols=59  Identities=17%  Similarity=0.356  Sum_probs=37.3

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCCC-----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPGR-----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~~-----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+.+.|.|.+. .. ...-.+.|.+.  ++.      +...           .+          ...|.+.++..
T Consensus        10 ~~~kPG~sl~LsC~~SG~s-~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYT-FTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCC-CCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            4567899999999986 32 00335667542  111      1100           00          23588889999


Q ss_pred             CCCceEEEEE
Q psy11131        114 EDRGIYQCIA  123 (150)
Q Consensus       114 ~~~g~y~C~~  123 (150)
                      +|.+.|.|..
T Consensus        89 eDtAvYYCAr   98 (118)
T d1nlbh1          89 EDTATYFCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999953

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.77  E-value=0.0034  Score=33.57  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        72 ~~L~i~~~~~~Dsg~YyCa~~~   93 (113)
T d2bnqd1          72 STLYIAASQPGDSATYLCAVRP   93 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEeeeecCCCCCCcEEeEeEec
Confidence            4799999999999999998754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.77  E-value=0.023  Score=30.38  Aligned_cols=59  Identities=19%  Similarity=0.402  Sum_probs=38.5

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC----------cc----------eeeEEEccCCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR----------TS----------STSLVINPVGRED  115 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~----------~~----------~~~l~~~~~~~~~  115 (150)
                      .+..|+++.|.|.+. ..- ..-.+.|.+.  |+.+      ...          .+          ...|.++++..+|
T Consensus        11 lvkPg~sl~LsC~~SG~~~-~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPL-TTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             EECTTSCEEEEEEECSSCT-TTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCc-cCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            567899999999997 330 0345677653  2211      000          01          2468899999999


Q ss_pred             CceEEEEEE
Q psy11131        116 RGIYQCIAR  124 (150)
Q Consensus       116 ~g~y~C~~~  124 (150)
                      .+.|.|-..
T Consensus        90 tAvYYCAr~   98 (117)
T d1c5db1          90 TAIYFCTRE   98 (117)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEecc
Confidence            999999643

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.76  E-value=0.023  Score=30.97  Aligned_cols=62  Identities=15%  Similarity=0.311  Sum_probs=39.7

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-----------Ccc----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-----------RTS----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-----------~~~----------~~~l~~~~~~  112 (150)
                      ...+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ..           ..+          ...|.++.+.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s-~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDT-FIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCC-ccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            34577899999999997 43 00345667542  1111      00           000          3468888999


Q ss_pred             CCCCceEEEEEEe
Q psy11131        113 REDRGIYQCIARR  125 (150)
Q Consensus       113 ~~~~g~y~C~~~~  125 (150)
                      .+|.+.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (128)
T d2nxyd1          88 SDDTAVYFCAGVY  100 (128)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccCceEEEEeEEe
Confidence            9999999998654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.75  E-value=0.0066  Score=32.28  Aligned_cols=22  Identities=36%  Similarity=0.691  Sum_probs=19.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.+++.+|+|.|.|....
T Consensus        74 ~~L~i~~l~~~Dsa~YyCA~~~   95 (111)
T d1cd0a_          74 ASLTISGLKTEDEADYYCQSYD   95 (111)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             cccccccCCcccCcEEEEeecc
Confidence            4799999999999999997543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.74  E-value=0.0088  Score=31.58  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=18.0

Q ss_pred             eeEEEccCCCCCCceEEEEEE
Q psy11131        104 TSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus       104 ~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ..|.+.++..+|.+.|.|...
T Consensus        71 ~~L~i~~l~~eDtAvYyCA~~   91 (107)
T d1sjva_          71 VYLEMNSLEPEDTAVYYCYTH   91 (107)
T ss_dssp             EEEEECSCCGGGCSEEEEEEC
T ss_pred             EEEeecCCCcccceeeeEecc
Confidence            468899999999999999643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.72  E-value=0.024  Score=30.35  Aligned_cols=60  Identities=18%  Similarity=0.399  Sum_probs=38.5

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-----------Ccc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-----------RTS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-----------~~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ..           ..+          ...|.++++..
T Consensus        10 ~~~kpg~sl~lsC~~SG~~-~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYS-FTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             EECCTTCCEEEEEEEESSC-SSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCC-CCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            3456799999999998 32 00456677652  1110      00           001          24688899999


Q ss_pred             CCCceEEEEEE
Q psy11131        114 EDRGIYQCIAR  124 (150)
Q Consensus       114 ~~~g~y~C~~~  124 (150)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jnhb1          89 EDSAVYSCSRG   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999654

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.71  E-value=0.017  Score=31.09  Aligned_cols=61  Identities=16%  Similarity=0.309  Sum_probs=35.7

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      ..++.+.|.|.+.  .|......+.|..++..+.....             .+.|.+..-.=.....|.|.|....
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            3567789999997  45211458899988865432211             2233332221123456999999754

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.69  E-value=0.0053  Score=32.49  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.+++++|+|.|.|....
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          71 YSLTISNLEPEDIATYFCQHHI   92 (107)
T ss_dssp             EEEECSCCCSCCCSEEEEEECS
T ss_pred             EEEEEeEeeecCCCcEEeeeCC
Confidence            5799999999999999997543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.67  E-value=0.014  Score=31.20  Aligned_cols=63  Identities=19%  Similarity=0.422  Sum_probs=39.8

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEcc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINP  110 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~  110 (150)
                      +....+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      ...           .+          ...|.+.+
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~-~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTF-TNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCG-GGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCcEECCCCCEEEEEEEccCcc-ccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            4445677899999999997 330 0345667552  1111      000           00          24678889


Q ss_pred             CCCCCCceEEEEEE
Q psy11131        111 VGREDRGIYQCIAR  124 (150)
Q Consensus       111 ~~~~~~g~y~C~~~  124 (150)
                      +..+|.+.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (116)
T d1mjuh1          86 LTSDDSAVYYCANK   99 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEccc
Confidence            99999999999643

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.63  E-value=0.0088  Score=32.34  Aligned_cols=21  Identities=38%  Similarity=0.627  Sum_probs=18.6

Q ss_pred             eEEEcCCCCCCCeEEEEEecc
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|.|.++..+|+|.|.|....
T Consensus        80 ~L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          80 ILTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EEEECSCCGGGCSEEEEEECC
T ss_pred             cccccccccccceeEEEEEcC
Confidence            599999999999999997653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.63  E-value=0.0043  Score=33.80  Aligned_cols=29  Identities=28%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..||.+..      ..|.|.++..+|+|.|.|-..
T Consensus        66 ~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          66 SGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALW  100 (123)
T ss_dssp             TTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeEEeeeccccceeecccccccccCcEEEEeee
Confidence            45776643      359999999999999999754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.63  E-value=0.0085  Score=31.82  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        70 ~~L~I~~l~~~DsavYyCA~~~   91 (109)
T d1w72l1          70 ATLTISRVEAGDEADYYCQVWD   91 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             cceEEeeeccCCCEEEEEEecC
Confidence            5789999999999999997653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.61  E-value=0.014  Score=30.83  Aligned_cols=61  Identities=25%  Similarity=0.431  Sum_probs=38.2

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-------------Ccc----------eeeEEEcc
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-------------RTS----------STSLVINP  110 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-------------~~~----------~~~l~~~~  110 (150)
                      ...+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ..             ..+          ...|.+.+
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t-~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFT-FNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCeECCCCCeEEEEEECCCc-ccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            34577899999999986 32 00335666542  1110      00             001          24688889


Q ss_pred             CCCCCCceEEEEEE
Q psy11131        111 VGREDRGIYQCIAR  124 (150)
Q Consensus       111 ~~~~~~g~y~C~~~  124 (150)
                      +..+|.+.|.|.-.
T Consensus        88 L~~eDTAvYYCAr~  101 (109)
T d2ck0h1          88 LKTEDTGIYYCVRG  101 (109)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhHCEEEEEEEc
Confidence            99999999999743

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.60  E-value=0.0037  Score=33.63  Aligned_cols=21  Identities=38%  Similarity=0.672  Sum_probs=19.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..|.|.++..+|+|.|.|.+.
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~   95 (117)
T d1dqta_          75 VNLTIQGLRAVDTGLYLCKVE   95 (117)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEhhcCccccCEeEEEEEe
Confidence            579999999999999999765

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0038  Score=33.63  Aligned_cols=22  Identities=9%  Similarity=0.267  Sum_probs=19.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|+|.++..+|+|.|.|.+..
T Consensus        77 ~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          77 VTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCcccCeEEEEEEec
Confidence            3699999999999999997643

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.52  E-value=0.03  Score=30.42  Aligned_cols=61  Identities=20%  Similarity=0.407  Sum_probs=38.6

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ...           .+          ...|.++++..
T Consensus        10 ~~~kPg~sl~LsC~~SG~s-~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGS-FSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             EEECTTCCEEEEEEEESSC-STTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCC-CCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            4567799999999997 32 00334666542  1111      000           00          34688899999


Q ss_pred             CCCceEEEEEEe
Q psy11131        114 EDRGIYQCIARR  125 (150)
Q Consensus       114 ~~~g~y~C~~~~  125 (150)
                      +|.+.|.|....
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999998653

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.014  Score=30.55  Aligned_cols=62  Identities=11%  Similarity=0.290  Sum_probs=35.9

Q ss_pred             ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131         67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG  128 (150)
Q Consensus        67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g  128 (150)
                      ..++.+.|.|.+.  .|......+.|..++..+.....             .+.|.+..-.-.....|+|.+.....
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            4567889999997  56211357889888765432211             22333332221234479999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.48  E-value=0.016  Score=30.89  Aligned_cols=59  Identities=20%  Similarity=0.373  Sum_probs=37.2

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeecC--cc------cCCC-----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQ------IPGR-----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~------~~~~-----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. .....+.|.+..  +.      +...           .+          ...|.++++..
T Consensus        10 ~~vkpG~sl~LsC~~SG~~-~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFT-LSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECccC-ccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            3567899999999986 32 003345665421  11      1000           01          24588999999


Q ss_pred             CCCceEEEEE
Q psy11131        114 EDRGIYQCIA  123 (150)
Q Consensus       114 ~~~g~y~C~~  123 (150)
                      +|.+.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.46  E-value=0.022  Score=30.59  Aligned_cols=61  Identities=18%  Similarity=0.404  Sum_probs=38.4

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCC-----------Ccc----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPG-----------RTS----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~-----------~~~----------~~~l~~~~~~  112 (150)
                      ...+..|+++.|.|.+. .. ...-.+.|.+.  ++.      +..           ..+          ...|.+..+.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~-~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~   87 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYT-FSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCC-CcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence            34567899999999987 33 00335667542  111      000           001          3468889999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1rz7h1          88 SEDTAVYYCAAD   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEeec
Confidence            999999999654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.45  E-value=0.023  Score=30.54  Aligned_cols=60  Identities=22%  Similarity=0.365  Sum_probs=38.5

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCCCc-----------c----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPGRT-----------S----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~~~-----------~----------~~~l~~~~~~  112 (150)
                      ...+..|+++.|.|.+. .. ...-.+.|.+.  ++.      +....           +          ...|.+.++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYI-STDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEccCc-ccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            34567899999999987 33 00345677653  211      11000           0          2468889999


Q ss_pred             CCCCceEEEEE
Q psy11131        113 REDRGIYQCIA  123 (150)
Q Consensus       113 ~~~~g~y~C~~  123 (150)
                      .+|.+.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (119)
T d1eapb1          88 SEDSAVYFCKR   98 (119)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEEE
Confidence            99999999964

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.45  E-value=0.031  Score=30.30  Aligned_cols=62  Identities=19%  Similarity=0.345  Sum_probs=39.8

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPV  111 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~  111 (150)
                      ....+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ...           .+          ...|.+.++
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L   85 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYI-FSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSL   85 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSC-TTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEEccCC-CCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeeccc
Confidence            334577899999999987 32 01456677652  2111      000           00          346888999


Q ss_pred             CCCCCceEEEEEE
Q psy11131        112 GREDRGIYQCIAR  124 (150)
Q Consensus       112 ~~~~~g~y~C~~~  124 (150)
                      ..+|...|.|...
T Consensus        86 ~~eDTAvYYCAr~   98 (126)
T d1lmka1          86 TSEDSAVYYCARG   98 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999743

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.44  E-value=0.019  Score=30.74  Aligned_cols=61  Identities=13%  Similarity=0.333  Sum_probs=38.7

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      ...           .+          ...|.+..+..
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~-~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTL-TELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCG-GGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCC-CCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            4567899999999986 320 0334566542  1110      000           00          24689999999


Q ss_pred             CCCceEEEEEEe
Q psy11131        114 EDRGIYQCIARR  125 (150)
Q Consensus       114 ~~~g~y~C~~~~  125 (150)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCA~~~  100 (117)
T d1iqdb1          89 DDTAVYYCAVPD  100 (117)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcceEEEEeEcC
Confidence            999999998654

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.42  E-value=0.0058  Score=32.46  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        72 ~~L~i~~~~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          72 FHLQKASVQESDSAVYYCALSG   93 (110)
T ss_dssp             CCEEEEEECGGGCEEEEEEEEE
T ss_pred             EeeeecCcCcCCCcccceeecC
Confidence            5689999999999999997654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0048  Score=33.23  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.4

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          75 VNLTIQGLRAMDTGLYICKVEL   96 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEeeccccCCCEEEEEeEec
Confidence            5799999999999999997653

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.047  Score=27.98  Aligned_cols=38  Identities=21%  Similarity=0.380  Sum_probs=32.2

Q ss_pred             eeeEEEccCCCCCCceEEEEEEeCCCC-ceeeeEEEEEc
Q psy11131        103 STSLVINPVGREDRGIYQCIARRSDGD-VAQGSAELQLG  140 (150)
Q Consensus       103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~-~~~~~~~l~v~  140 (150)
                      ..+|.|..+...|+|.|.-.+.+..|. ...+++.|.|.
T Consensus        62 nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          62 NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             CCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            578999999999999999999999884 34667888775

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0081  Score=31.10  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.2

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..+.|.+++..|+|.|+|....
T Consensus        56 a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2          56 ANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             EEEECCSCCGGGCEEEEEEEEC
T ss_pred             cEEEEeccccccCcEEEEEEEc
Confidence            5688999999999999998654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.38  E-value=0.022  Score=30.64  Aligned_cols=61  Identities=16%  Similarity=0.356  Sum_probs=39.3

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~~  112 (150)
                      ...+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      ...           .+          ...|.++++.
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~-~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTF-TDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCG-GGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCC-cCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            34577899999999987 330 0345677553  1111      000           00          3468888999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (120)
T d1ad9b1          88 SEDTAFYFCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEEEc
Confidence            999999999754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.35  E-value=0.034  Score=30.22  Aligned_cols=61  Identities=13%  Similarity=0.350  Sum_probs=38.9

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCCc-----------c----------eeeEEEccC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGRT-----------S----------STSLVINPV  111 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~~-----------~----------~~~l~~~~~  111 (150)
                      ....+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ....           +          ...|.+..+
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~-~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L   86 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYR-FSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCC-CCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEcc
Confidence            345677899999999997 33 00335667652  2111      1000           0          245888899


Q ss_pred             CCCCCceEEEEE
Q psy11131        112 GREDRGIYQCIA  123 (150)
Q Consensus       112 ~~~~~g~y~C~~  123 (150)
                      ..+|.+.|.|.-
T Consensus        87 ~~eDtAvYYCAR   98 (127)
T d1n0xh1          87 RSADTAVYYCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEEe
Confidence            999999999964

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.34  E-value=0.064  Score=29.09  Aligned_cols=60  Identities=25%  Similarity=0.469  Sum_probs=38.9

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ...           .+          ...|.++++..
T Consensus         9 ~lvkPg~sl~LsC~~SG~~-~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGAT-SSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             EEECTTCCEEEEEECC-CT-TTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEECCCC-CcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            4567899999999987 22 00446677653  2111      000           00          23588899999


Q ss_pred             CCCceEEEEEE
Q psy11131        114 EDRGIYQCIAR  124 (150)
Q Consensus       114 ~~~g~y~C~~~  124 (150)
                      +|...|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.31  E-value=0.062  Score=29.39  Aligned_cols=60  Identities=20%  Similarity=0.385  Sum_probs=38.2

Q ss_pred             EEecCCcEEEEEEec-CC-CCCCcEEEEeec--CcccC-------C---------Ccc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PY-DSGPYLIAWFKD--GRQIP-------G---------RTS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~--~~~~~-------~---------~~~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. .. .....-+.|++.  ++.+.       .         ..+          ...|.|+++..+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            567799999999976 22 100235778653  11110       0         000          245899999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |...|.|...
T Consensus        91 DtAvYYCAr~  100 (132)
T d1tjgh1          91 DTATYFCAHR  100 (132)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEe
Confidence            9999999755

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=95.28  E-value=0.051  Score=29.23  Aligned_cols=61  Identities=16%  Similarity=0.336  Sum_probs=39.0

Q ss_pred             EEecCCcEEEEEEec-CC-CCCCcEEEEeec--Cccc------CCCc----------c----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PY-DSGPYLIAWFKD--GRQI------PGRT----------S----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~--~~~~------~~~~----------~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. .. ....-.+.|.+.  ++.+      ....          +          ...|.+..+..+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            467899999999987 32 101345678653  2211      1000          0          246888999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |.+.|.|....
T Consensus        91 DtAvYYCAr~~  101 (120)
T d1ai1h1          91 DTAMYYCSREN  101 (120)
T ss_dssp             GCEEEEEEEEE
T ss_pred             ceeEEEEEecC
Confidence            99999997543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.27  E-value=0.028  Score=30.68  Aligned_cols=61  Identities=15%  Similarity=0.352  Sum_probs=38.2

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~~  112 (150)
                      ...+..|+++.|.|.+. .. .....+.|.+.  ++.+      ...           .+          ...|.++++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~-~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGT-FSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLR   87 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSC-GGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCC-CCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecC
Confidence            34577899999999987 32 00345667552  2111      000           00          2357788999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|.+.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (130)
T d1rzga1          88 SEDTAVFYCASP   99 (130)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCccEEEEEEEe
Confidence            999999999753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.23  E-value=0.006  Score=32.43  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+|.|.++..+|+|.|.|....
T Consensus        72 ~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          72 LSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCCcccccEEEEeeccC
Confidence            5799999999999999997653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=95.21  E-value=0.046  Score=29.26  Aligned_cols=61  Identities=23%  Similarity=0.392  Sum_probs=39.5

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC----------cc----------eeeEEEccCCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR----------TS----------STSLVINPVGRED  115 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~----------~~----------~~~l~~~~~~~~~  115 (150)
                      .+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ...          .+          ...|.+..+..+|
T Consensus        11 ~vkPG~Sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFT-LRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             EECTTCCEEEEEEEESSC-TTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCc-ccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            467899999999987 32 01456777653  1111      000          00          2468889999999


Q ss_pred             CceEEEEEEeC
Q psy11131        116 RGIYQCIARRS  126 (150)
Q Consensus       116 ~g~y~C~~~~~  126 (150)
                      .+.|.|.....
T Consensus        90 tA~YyCAr~~~  100 (118)
T d1lo4h1          90 TAIYYCARGTS  100 (118)
T ss_dssp             CEEEEEEEEET
T ss_pred             ceEEEecccCC
Confidence            99999975543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.20  E-value=0.019  Score=31.17  Aligned_cols=62  Identities=18%  Similarity=0.374  Sum_probs=38.4

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------C-C----------Ccc----------eeeEEEccC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------P-G----------RTS----------STSLVINPV  111 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~-~----------~~~----------~~~l~~~~~  111 (150)
                      ....+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      . .          ..+          ...|.+..+
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~-~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL   86 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSF-TSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSL   86 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCG-GGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEccCCC-CCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeecc
Confidence            334567899999999986 320 0234566542  1110      0 0          000          245888899


Q ss_pred             CCCCCceEEEEEE
Q psy11131        112 GREDRGIYQCIAR  124 (150)
Q Consensus       112 ~~~~~g~y~C~~~  124 (150)
                      ..+|.+.|.|...
T Consensus        87 ~~eDtAvYYCAR~   99 (125)
T d1rihh1          87 TSEDSAVYYCARE   99 (125)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcccceEEEEeee
Confidence            9999999999755

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.14  E-value=0.053  Score=29.69  Aligned_cols=59  Identities=24%  Similarity=0.466  Sum_probs=37.9

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. .. ...-.+.|.+.  |+.+      ...           .+          ...|.+.++..+
T Consensus        11 lvkPG~Sl~LsC~~SG~s-~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFT-FSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             EECTTCEEEEEEEEESSC-TTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             eECCCCCeEEEEEEcCCC-CcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            467899999999987 32 00345667642  2111      100           00          246888899999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |.+.|.|...
T Consensus        90 DTAvYYCAr~   99 (135)
T d1ieha_          90 DTAVYYCAKY   99 (135)
T ss_dssp             SCEEEEEEEB
T ss_pred             cceeeEEEEe
Confidence            9999999755

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.13  E-value=0.017  Score=31.13  Aligned_cols=59  Identities=20%  Similarity=0.459  Sum_probs=36.8

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-----------Ccc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-----------RTS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-----------~~~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. .. ...-.+.|++.  ++.+      ..           ..+          ...|.|+++..+
T Consensus        11 ~~kpG~Sv~LsC~~SG~s-~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYT-FTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             EECTTEEEEEEEEEETCC-SSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             eECCCCCEEEEEEEeccC-CCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            566799999999876 22 00334667542  2111      00           000          245888999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |.+.|.|...
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.12  E-value=0.033  Score=29.87  Aligned_cols=63  Identities=24%  Similarity=0.397  Sum_probs=39.6

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCCC-----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPGR-----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~~-----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. ...-.+.|.+.  ++.      +...           .+          ...|.+.++..
T Consensus        10 ~~vkpg~sl~LsC~~SG~~-~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFD-FSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECCcc-ccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            4567899999999987 32 00234566542  111      0000           00          24588889999


Q ss_pred             CCCceEEEEEEeCC
Q psy11131        114 EDRGIYQCIARRSD  127 (150)
Q Consensus       114 ~~~g~y~C~~~~~~  127 (150)
                      +|.+.|.|......
T Consensus        89 eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          89 EDTALYYCARLHYY  102 (118)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             CcceEEEeeEecCC
Confidence            99999999866543

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.04  Score=27.48  Aligned_cols=50  Identities=30%  Similarity=0.597  Sum_probs=35.0

Q ss_pred             CcEEEEEEecCCCCCCcEEEEeecCcccCCCcc-eeeEEEccCCCCCCceEEEEEE
Q psy11131         70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-STSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        70 ~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~-~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      ..|.|.|...     ...+.|++++..+..... ...+-+-.....-.|.|.|...
T Consensus        23 GsV~L~Cn~~-----~k~i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          23 GSVLLTCGLT-----DKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             CEEEEECSSS-----CSCEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEES
T ss_pred             CeEEEEeCCC-----CcEEEEecCCceecccccccceeecCCcccCCCcceEcCCC
Confidence            4588999653     446999999887654432 3456666666777899999643

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.016  Score=30.06  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..+.|.+++..|+|.|+|....
T Consensus        60 a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2          60 AIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             EEEEECCCCTTSCEEEEEEEEC
T ss_pred             EEEEeeecccCCCeEEEEeeEc
Confidence            3589999999999999997654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.08  E-value=0.015  Score=30.02  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..+.|.+++..|.|.|.|....
T Consensus        57 a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          57 ANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEB
T ss_pred             EEEEEcccCcccCeEEEEEEEc
Confidence            4589999999999999997653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.04  E-value=0.042  Score=29.51  Aligned_cols=60  Identities=22%  Similarity=0.413  Sum_probs=38.3

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-------------Ccc----------eeeEEEccCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-------------RTS----------STSLVINPVG  112 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-------------~~~----------~~~l~~~~~~  112 (150)
                      .+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      ..             ..+          ...|.+.++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~-~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTF-SDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSCT-TTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCccC-cCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            467899999999987 320 0456677542  2111      00             001          2468888999


Q ss_pred             CCCCceEEEEEEe
Q psy11131        113 REDRGIYQCIARR  125 (150)
Q Consensus       113 ~~~~g~y~C~~~~  125 (150)
                      .+|...|.|....
T Consensus        90 ~eDtAvYYCA~~~  102 (120)
T d1dlfh_          90 AEDTGIYYCTGIY  102 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCCceEEEeeEec
Confidence            9999999997543

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.99  E-value=0.025  Score=30.28  Aligned_cols=59  Identities=25%  Similarity=0.411  Sum_probs=37.6

Q ss_pred             EEEecCCcEEEEEEec-CC-CCCCcEEEEeec--Ccc------cCCC-------------------c--ceeeEEEccCC
Q psy11131         64 LSVHLDGSANFQCEIT-PY-DSGPYLIAWFKD--GRQ------IPGR-------------------T--SSTSLVINPVG  112 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~--~~~------~~~~-------------------~--~~~~l~~~~~~  112 (150)
                      ..+..|+++.|.|.+. .. .  .-.+.|.+.  ++.      +...                   .  ....|.++++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~--~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~   87 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFT--SSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLR   87 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHT--TSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEECCCCCc--CCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecccc
Confidence            3567899999999987 21 1  345566542  111      1000                   0  03468888999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1b2wh1          88 PEDTAVYYCARG   99 (117)
T ss_dssp             GGGCEEEECCEE
T ss_pred             CCcceEEEEccc
Confidence            999999999643

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.94  E-value=0.045  Score=29.47  Aligned_cols=59  Identities=25%  Similarity=0.566  Sum_probs=37.3

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ...           .+          ...|.++++..+
T Consensus        11 ~vkpg~sl~LsC~~SG~s-~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFT-FSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCcC-CcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            467799999999986 32 00234566542  1111      100           00          246889999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |.+.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1ol0a_          90 DTAVYYCARE   99 (121)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0076  Score=31.02  Aligned_cols=20  Identities=35%  Similarity=0.629  Sum_probs=18.0

Q ss_pred             CeEEEcCCCCCCCeEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      ..+.|.+++..|+|.|+|..
T Consensus        54 a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          54 AEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             EEEEEEECCGGGCEEEEEEC
T ss_pred             eEEEecccChhcCceEEEEe
Confidence            56899999999999999964

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.92  E-value=0.02  Score=28.89  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=32.4

Q ss_pred             CcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131         70 GSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRS  126 (150)
Q Consensus        70 ~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~  126 (150)
                      ..+.|.|.+.  .|.  ...+.|..++........        ...+.+...  .....|+|.+...
T Consensus        14 ~~~tl~Cl~~gF~P~--~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~--~~~~~yTC~V~H~   76 (86)
T d1hxma2          14 NGTNVACLVKEFYPK--DIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKY--EDSNSVTCSVQHD   76 (86)
T ss_dssp             ETTEEEEEEESCBSS--CCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEE--TTTTTCEEEEEET
T ss_pred             CCCEEEEEEeeEECC--CCEEEEEECCEEccCcEEeeeccCCcEEEEEEEec--CCCCEEEEEEEEC
Confidence            4468999998  553  678999988765432211        222222223  3344799999864

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.92  E-value=0.019  Score=31.03  Aligned_cols=61  Identities=20%  Similarity=0.468  Sum_probs=38.2

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCC-----------Ccc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPG-----------RTS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~-----------~~~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. ..- ..-.+.|.+.  ++.      +..           ..+          ...|.++++..+
T Consensus        11 lvkPG~sl~LsC~~SG~s~-~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTF-SSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECcccC-cCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            567899999999986 330 0234566542  111      100           000          235888999999


Q ss_pred             CCceEEEEEEeC
Q psy11131        115 DRGIYQCIARRS  126 (150)
Q Consensus       115 ~~g~y~C~~~~~  126 (150)
                      |.+.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (123)
T d1mqkh_          90 DTAMYYCVRHEY  101 (123)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cccceeEEecCC
Confidence            999999976543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.92  E-value=0.011  Score=31.94  Aligned_cols=29  Identities=21%  Similarity=0.479  Sum_probs=22.8

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        66 ~gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          66 QSRLTITKDASKKQVVLTLTNLDPVDTATYYCART  100 (120)
T ss_dssp             CSSEEEECCTTTTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             ccccceecccccceeeeeEEeeeeccceEEeeEec
Confidence            35777653      359999999999999999643

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.86  E-value=0.015  Score=30.44  Aligned_cols=29  Identities=21%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        52 ~~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~   86 (103)
T d1oari_          52 KSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARM   86 (103)
T ss_dssp             TTTEEEEC----CEEEEEECCC---CCSEEEEEEE
T ss_pred             eeceEEeccccccEEEeeeeeccccccEEEEeEEE
Confidence            36776664      358999999999999999643

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.86  E-value=0.031  Score=30.27  Aligned_cols=63  Identities=16%  Similarity=0.303  Sum_probs=39.3

Q ss_pred             CcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-----------Ccc----------eeeEEEccC
Q psy11131         62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-----------RTS----------STSLVINPV  111 (150)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-----------~~~----------~~~l~~~~~  111 (150)
                      ....+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      ..           ..+          ...|.+.++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~-~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L   86 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSF-SDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSL   86 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCG-GGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSC
T ss_pred             CCceECCCCCEEEEEEEcCCCC-cCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecc
Confidence            334667899999999997 330 0234566542  1110      00           000          346888999


Q ss_pred             CCCCCceEEEEEEe
Q psy11131        112 GREDRGIYQCIARR  125 (150)
Q Consensus       112 ~~~~~g~y~C~~~~  125 (150)
                      ..+|...|.|....
T Consensus        87 ~~eDTA~YYCAR~~  100 (124)
T d2b1hh1          87 KPSDTALYYCARLG  100 (124)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccceEEEEeecC
Confidence            99999999996443

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.85  E-value=0.035  Score=30.07  Aligned_cols=60  Identities=20%  Similarity=0.371  Sum_probs=37.9

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-----------Ccc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-----------RTS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-----------~~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. .....+.|.+.  ++.+      ..           ..+          ...|.+..+..
T Consensus        10 ~lvkpg~sl~LsC~~SG~~-~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFR-ISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             EEEETTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEeECCcc-CcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            4567899999999986 22 00334566542  1110      00           000          34688889999


Q ss_pred             CCCceEEEEEE
Q psy11131        114 EDRGIYQCIAR  124 (150)
Q Consensus       114 ~~~g~y~C~~~  124 (150)
                      +|...|.|...
T Consensus        89 eDTAvYYCAr~   99 (125)
T d1op3h1          89 EDTAIYYCARK   99 (125)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceeEeEeec
Confidence            99999999765

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.85  E-value=0.13  Score=28.13  Aligned_cols=62  Identities=15%  Similarity=0.347  Sum_probs=39.5

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-----------Ccc----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-----------RTS----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-----------~~~----------~~~l~~~~~~  112 (150)
                      ...+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ..           ..+          ...|.+.++.
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~-~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~   86 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGAT-LNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR   86 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSC-STTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCC-ccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence            34577899999999987 32 01345667552  1111      00           000          3468888999


Q ss_pred             CCCCceEEEEEEe
Q psy11131        113 REDRGIYQCIARR  125 (150)
Q Consensus       113 ~~~~g~y~C~~~~  125 (150)
                      .+|.+.|.|....
T Consensus        87 ~eDtA~YYCAr~~   99 (133)
T d1rzfh1          87 SDDTAVYYCASNS   99 (133)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCCCEEEEeeecc
Confidence            9999999997653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.84  E-value=0.067  Score=28.79  Aligned_cols=63  Identities=14%  Similarity=0.336  Sum_probs=40.6

Q ss_pred             CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC-----------cc----------eeeEEEcc
Q psy11131         61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR-----------TS----------STSLVINP  110 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~-----------~~----------~~~l~~~~  110 (150)
                      +....+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      ...           .+          ...|.+.+
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~-~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~   86 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSF-TSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCG-GGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCcEECCCCCEEEEEEEcCCCc-cCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence            3445678899999999997 430 0346777653  1111      000           00          23588889


Q ss_pred             CCCCCCceEEEEEE
Q psy11131        111 VGREDRGIYQCIAR  124 (150)
Q Consensus       111 ~~~~~~g~y~C~~~  124 (150)
                      +..+|.+.|.|...
T Consensus        87 L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          87 LRPEDTAVYYCARD  100 (122)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999765

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=94.83  E-value=0.061  Score=29.18  Aligned_cols=60  Identities=23%  Similarity=0.429  Sum_probs=38.7

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC----------Ccc----------eeeEEEccCCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG----------RTS----------STSLVINPVGRED  115 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~----------~~~----------~~~l~~~~~~~~~  115 (150)
                      .+..|+++.|.|.+. ..-...-.+.|.+.  |+.+      ..          ..+          ...|.+..+..+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            457799999999987 43000246778653  2211      00          000          3568899999999


Q ss_pred             CceEEEEEE
Q psy11131        116 RGIYQCIAR  124 (150)
Q Consensus       116 ~g~y~C~~~  124 (150)
                      ...|.|...
T Consensus        91 tAvYyCAr~   99 (127)
T d3cx5j1          91 TATYYCARS   99 (127)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeee
Confidence            999999753

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.83  E-value=0.077  Score=28.77  Aligned_cols=60  Identities=17%  Similarity=0.422  Sum_probs=37.1

Q ss_pred             EEecCCcEEEEEEec-CC-CCCCcEEEEeec--CcccC--------------C--Ccc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PY-DSGPYLIAWFKD--GRQIP--------------G--RTS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~--~~~~~--------------~--~~~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. .. ......+.|++.  ++.+.              .  ..+          ...|.|.++..+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            466799999999875 22 100234567542  21110              0  001          246899999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |...|.|...
T Consensus        91 DtAvYyCAr~  100 (126)
T d1etzb1          91 DTATYHCARR  100 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccceEEEEEe
Confidence            9999999754

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.80  E-value=0.05  Score=29.36  Aligned_cols=61  Identities=21%  Similarity=0.407  Sum_probs=38.2

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCCc-----------c----------eeeEEEccCC
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGRT-----------S----------STSLVINPVG  112 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~~-----------~----------~~~l~~~~~~  112 (150)
                      ...+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ....           +          ...|.++.+.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~   87 (124)
T d1yedb1           9 PELVRPGTSVKLSCKTSGYI-FTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLK   87 (124)
T ss_dssp             CEEECTTCEEEEEEEEESSC-GGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCC
T ss_pred             CceECCCCCEEEEEEEcCCC-ccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccC
Confidence            34567899999999987 32 00335666542  1111      0000           0          3468888999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|...|.|...
T Consensus        88 ~eDTAvYYCAR~   99 (124)
T d1yedb1          88 SEDSAVYFCTRW   99 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEeccc
Confidence            999999999754

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.68  E-value=0.093  Score=28.30  Aligned_cols=60  Identities=17%  Similarity=0.365  Sum_probs=37.4

Q ss_pred             EEecCCcEEEEEEec-CC-CCCCcEEEEeec--CcccC------C----------Ccc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PY-DSGPYLIAWFKD--GRQIP------G----------RTS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~--~~~~~------~----------~~~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. .. ....-.+.|++.  ++.+.      .          ..+          ...|.|..+..+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            466799999999876 22 100235678652  22110      0          000          245888999999


Q ss_pred             CCceEEEEEE
Q psy11131        115 DRGIYQCIAR  124 (150)
Q Consensus       115 ~~g~y~C~~~  124 (150)
                      |...|.|...
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999754

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.67  E-value=0.071  Score=28.95  Aligned_cols=60  Identities=28%  Similarity=0.614  Sum_probs=38.6

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------C----------------CCcc----------eeeEEEc
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------P----------------GRTS----------STSLVIN  109 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~----------------~~~~----------~~~l~~~  109 (150)
                      .+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      .                ...+          ...|.++
T Consensus        11 lvkpg~sl~LsC~~SG~~~-s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSI-GTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCG-GGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCCCCeEEEEEEcCCCC-CCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            456799999999987 320 0446677653  1110      0                0001          3468889


Q ss_pred             cCCCCCCceEEEEEEe
Q psy11131        110 PVGREDRGIYQCIARR  125 (150)
Q Consensus       110 ~~~~~~~g~y~C~~~~  125 (150)
                      ++..+|...|.|....
T Consensus        90 ~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             cccccceeEEEEEEEe
Confidence            9999999999998653

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.61  E-value=0.034  Score=29.94  Aligned_cols=61  Identities=20%  Similarity=0.352  Sum_probs=39.1

Q ss_pred             cEEEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------C---CC----------cc----------eeeEEEcc
Q psy11131         63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------P---GR----------TS----------STSLVINP  110 (150)
Q Consensus        63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~---~~----------~~----------~~~l~~~~  110 (150)
                      ...+..|+++.|.|.+. .. ...-.+.|.+.  ++.+      .   ..          .+          ...|.+.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~-~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~   87 (121)
T d1nfdf1           9 GDLVQPGSSLKVSCAASGFT-FSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR   87 (121)
T ss_dssp             CEEECTTCEEEEEEEEESSC-GGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred             CceECCCCCEEEEEEEcCCC-CcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence            34577899999999987 33 00345667652  2111      0   00          00          34588999


Q ss_pred             CCCCCCceEEEEEE
Q psy11131        111 VGREDRGIYQCIAR  124 (150)
Q Consensus       111 ~~~~~~g~y~C~~~  124 (150)
                      +..+|.+.|.|...
T Consensus        88 L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          88 LRVDDTAIYYCTRA  101 (121)
T ss_dssp             CCGGGCEECEEEEE
T ss_pred             cCCCcceEEEEecc
Confidence            99999999999754

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=94.57  E-value=0.049  Score=29.20  Aligned_cols=61  Identities=21%  Similarity=0.373  Sum_probs=38.7

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCC----------cc----------eeeEEEccCCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGR----------TS----------STSLVINPVGRED  115 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~----------~~----------~~~l~~~~~~~~~  115 (150)
                      .+..|+++.|.|.+. ..-...-.+.|.+.  ++.+      ...          .+          ...|.+.++..+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eD   90 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTED   90 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCC
Confidence            567899999999998 44000234677552  2211      000          00          2468888999999


Q ss_pred             CceEEEEEEe
Q psy11131        116 RGIYQCIARR  125 (150)
Q Consensus       116 ~g~y~C~~~~  125 (150)
                      ...|.|....
T Consensus        91 TAvYYCAr~~  100 (119)
T d1ncwh1          91 TATYYCAGLL  100 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeEec
Confidence            9999997553

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.56  E-value=0.013  Score=31.13  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        69 ~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          69 STLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEECCC
T ss_pred             eEEEEeecccccceeEeeeEec
Confidence            4699999999999999997653

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.52  E-value=0.056  Score=29.11  Aligned_cols=59  Identities=22%  Similarity=0.459  Sum_probs=37.5

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-------------Ccc----------eeeEEEccCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-------------RTS----------STSLVINPVG  112 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-------------~~~----------~~~l~~~~~~  112 (150)
                      .+..|+++.|.|.+. ..- ..-.+.|.+.  ++.+      ..             ..+          ...|.+..+.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~-~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTF-TDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCC-cCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            567799999999987 320 0234667642  2111      00             001          2458888999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|...|.|...
T Consensus        90 ~eDTAvYYCar~  101 (122)
T d1q9rb1          90 AEDSATYYCARD  101 (122)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCcceEEEEEec
Confidence            999999999854

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=94.50  E-value=0.094  Score=28.36  Aligned_cols=61  Identities=25%  Similarity=0.438  Sum_probs=38.6

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCCCc-----------c----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPGRT-----------S----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~~~-----------~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. ...-.+.|.+.  ++.      +....           +          ...|.+..+..
T Consensus        10 ~~vkPg~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFT-FNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEECCcc-ccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            4567899999999987 32 00335667552  111      11000           0          24688889999


Q ss_pred             CCCceEEEEEEe
Q psy11131        114 EDRGIYQCIARR  125 (150)
Q Consensus       114 ~~~g~y~C~~~~  125 (150)
                      +|.+.|.|....
T Consensus        89 eDtavYYCAr~~  100 (126)
T d1dfbh1          89 EDMALYYCVKGR  100 (126)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEEecc
Confidence            999999997654

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.36  E-value=0.032  Score=30.12  Aligned_cols=61  Identities=20%  Similarity=0.356  Sum_probs=38.4

Q ss_pred             EEEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCCC-----------cc----------eeeEEEccCCC
Q psy11131         64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPGR-----------TS----------STSLVINPVGR  113 (150)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~~-----------~~----------~~~l~~~~~~~  113 (150)
                      ..+..|+++.|.|.+. .. ...-.+.|.+.  ++.      +...           .+          ...|.++++..
T Consensus        10 ~lvkPg~sl~LsC~~SG~s-~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFT-FSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCC-CcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            3567899999999987 43 00335667552  111      1000           00          24688889999


Q ss_pred             CCCceEEEEEEe
Q psy11131        114 EDRGIYQCIARR  125 (150)
Q Consensus       114 ~~~g~y~C~~~~  125 (150)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 EDTAIYYCTRGG  100 (122)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCceEEEeecCC
Confidence            999999997653

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.31  E-value=0.016  Score=31.00  Aligned_cols=29  Identities=24%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..|+.+..      ..|++.+++.+|++.|+|-..
T Consensus        65 kgR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          65 QDRATISADNSKNTAYLQMNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEEeccccceEEecccccCCCCceEEEEeec
Confidence            35666654      348999999999999999543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=94.30  E-value=0.075  Score=28.83  Aligned_cols=60  Identities=22%  Similarity=0.424  Sum_probs=37.7

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Ccc------cCCC-----------cc----------eeeEEEccCCCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQ------IPGR-----------TS----------STSLVINPVGRE  114 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~------~~~~-----------~~----------~~~l~~~~~~~~  114 (150)
                      .+..|+++.|.|.+. .. ...-.+.|.+.  ++.      +...           .+          ...|.++++..+
T Consensus        11 ~~kpg~sl~LsC~~SG~~-~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFI-FSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCCC-ccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            467799999999986 32 00334566542  111      0000           00          346888999999


Q ss_pred             CCceEEEEEEe
Q psy11131        115 DRGIYQCIARR  125 (150)
Q Consensus       115 ~~g~y~C~~~~  125 (150)
                      |.+.|.|....
T Consensus        90 DTA~YYCAr~~  100 (127)
T d2fb4h1          90 DTGVYFCARDG  100 (127)
T ss_dssp             GCEEEEEEEEC
T ss_pred             ceeEEEEEEec
Confidence            99999997653

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.24  E-value=0.012  Score=31.82  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=19.3

Q ss_pred             CeEEEcCCCCCCCeEEEEEecc
Q psy11131         17 PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      ..|.|.++..+|+|.|.|....
T Consensus        75 ~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          75 AVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEC
T ss_pred             eecccccccccCCceeecCccc
Confidence            5799999999999999997543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.21  E-value=0.018  Score=30.45  Aligned_cols=27  Identities=26%  Similarity=0.504  Sum_probs=21.6

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|--
T Consensus        68 gR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          68 DRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVR  100 (109)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCceeccccccceeEecccCCCHhHCEEEEEEE
Confidence            4666654      34899999999999999964

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.20  E-value=0.018  Score=30.86  Aligned_cols=28  Identities=32%  Similarity=0.485  Sum_probs=22.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|...
T Consensus        65 gR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~   98 (116)
T d7fabh1          65 GRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARN   98 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeecccchhhhhccccccccccceEEEeeee
Confidence            5666643      358999999999999999653

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.18  E-value=0.017  Score=31.41  Aligned_cols=27  Identities=33%  Similarity=0.557  Sum_probs=21.6

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-.
T Consensus        67 ~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr   99 (126)
T d1etzb1          67 SRLTVSKDTSSNQVFLKITSVDTSDTATYHCAR   99 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EeeEEecccCCcEEEcceecccccccceEEEEE
Confidence            4666544      35999999999999999964

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.17  E-value=0.016  Score=30.59  Aligned_cols=28  Identities=21%  Similarity=0.420  Sum_probs=21.9

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|...
T Consensus        58 gR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~~   91 (107)
T d1sjva_          58 GRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTH   91 (107)
T ss_dssp             TCEEEEECTTTCCEEEEECSCCGGGCSEEEEEEC
T ss_pred             cceEEecCCceeEEEEeecCCCcccceeeeEecc
Confidence            5666653      358999999999999999643

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.13  E-value=0.016  Score=30.74  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=33.5

Q ss_pred             cCCcEEEEEEec--CCCCCCcEEEEeecCcccC--------CCcceeeEEEccCCCCC---CceEEEEEEeCC
Q psy11131         68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--------GRTSSTSLVINPVGRED---RGIYQCIARRSD  127 (150)
Q Consensus        68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~--------~~~~~~~l~~~~~~~~~---~g~y~C~~~~~~  127 (150)
                      .+..+.|.|.+.  .|.  ...+.|..++....        .+..........+..++   ...|.|.|....
T Consensus        26 ~~~~~tL~C~v~gf~P~--~i~v~W~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPA--DINVEWDSSEPSDYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSS--CCEEESSSCCTTTEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECC--CcEEEEeeCCCCCcEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            356688999998  553  57899987764211        00001222223344443   346999999754

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.11  E-value=0.019  Score=30.90  Aligned_cols=28  Identities=21%  Similarity=0.519  Sum_probs=22.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|...
T Consensus        66 gRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          66 GRVTITADTSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEecccCceEEEeeeeccCcccceEEEEeec
Confidence            5666643      348999999999999999654

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.11  E-value=0.041  Score=29.40  Aligned_cols=58  Identities=17%  Similarity=0.393  Sum_probs=37.3

Q ss_pred             EecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CCCc----------c----------eeeEEEccCCCCCC
Q psy11131         66 VHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PGRT----------S----------STSLVINPVGREDR  116 (150)
Q Consensus        66 ~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~~~----------~----------~~~l~~~~~~~~~~  116 (150)
                      +..|+++.|.|.+. .. ...-.+.|.+.  ++.+      ....          +          ...|.++++..+|.
T Consensus        12 vkPg~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          12 VRPSETLSLTCTVSGFS-LTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             CCTTSEECCEEECCSSC-TTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             ECCCCCeEEEEEEeCcc-cccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            45789999999997 33 11456778653  2211      1100          0          23577789999999


Q ss_pred             ceEEEEEE
Q psy11131        117 GIYQCIAR  124 (150)
Q Consensus       117 g~y~C~~~  124 (150)
                      ..|.|...
T Consensus        91 AvYyCAr~   98 (116)
T d1fn4b1          91 GTYYCTRD   98 (116)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            99999654

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.033  Score=27.53  Aligned_cols=50  Identities=34%  Similarity=0.660  Sum_probs=34.1

Q ss_pred             CCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc-eeeEEEccCCCCCCceEEEEE
Q psy11131         69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        69 g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~-~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      ...+.|.|...     ...+.|++++..+..... ...+-+-....+-.|.|.|..
T Consensus        17 dg~V~L~Cn~~-----~k~i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRG~Y~C~~   67 (81)
T d1sy6a1          17 DGSVLLTCDAE-----AKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKG   67 (81)
T ss_dssp             SSEEEEEECSC-----SSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEES
T ss_pred             CCeEEEEeCCC-----CcEEEEecCCeEeecccCCcceeecCCcccCCCcceEcCC
Confidence            34688999542     558999998876542211 346666666667789999964

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.06  E-value=0.019  Score=30.71  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=22.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-..
T Consensus        65 gRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEecccccceeeccccccccCcceEEEEecc
Confidence            4666654      358999999999999999544

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.05  E-value=0.019  Score=30.75  Aligned_cols=26  Identities=31%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEE
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCS   35 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~   35 (150)
                      .|+.+..      -.|+|.+++.+|++.|+|-
T Consensus        66 gRftisrD~s~~tvyL~~~~L~~eDtAvYYCA   97 (118)
T d1nlbh1          66 GRFAFSLETSASTAYLQINSLKNEDTATYFCA   97 (118)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeeEEEecCCceeEEeeeeecccCcceEEEEe
Confidence            5666654      3489999999999999994

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=94.03  E-value=0.019  Score=30.99  Aligned_cols=27  Identities=30%  Similarity=0.513  Sum_probs=21.3

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|..
T Consensus        67 gRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr   99 (120)
T d1ai1h1          67 SRSTISRDTSLNKFFIQLISVTNEDTAMYYCSR   99 (120)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             ccceeccccccceeecceeeeeccceeEEEEEe
Confidence            4665543      34899999999999999963

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.02  E-value=0.019  Score=30.74  Aligned_cols=28  Identities=21%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-..
T Consensus        66 gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr~   99 (115)
T d1f3dh1          66 GKATLTVDKSSSTAFMHLNSLTFEDSAVYYCAND   99 (115)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EEEEEeeccCceeeEeeeeecCcCCcEEEEEecc
Confidence            4666643      349999999999999999543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.96  E-value=0.032  Score=30.58  Aligned_cols=29  Identities=21%  Similarity=0.418  Sum_probs=22.8

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      +|+.+..      ..|.|.+++.+|++.|+|....
T Consensus        66 gRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          66 GRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAKYS  100 (135)
T ss_dssp             TTEEEEECTTTCCEEEEEESCCSSSCEEEEEEEBS
T ss_pred             EeEEEeccCCCceeEecEeeeCcccceeeEEEEec
Confidence            5666654      3589999999999999996543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=93.92  E-value=0.021  Score=30.72  Aligned_cols=28  Identities=29%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      ..|+.+..      ..|+|.+++.+|++.|.|-.
T Consensus        64 kgRftiS~D~s~nt~~L~i~~l~~eDtA~YYCAr   97 (120)
T d1dn0b1          64 KSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR   97 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeeeEEeccCchheecccccccccccccEEEEEe
Confidence            35776654      34899999999999999953

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.87  E-value=0.021  Score=30.74  Aligned_cols=28  Identities=21%  Similarity=0.488  Sum_probs=22.3

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|...
T Consensus        64 gR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~   97 (119)
T d1kxvc_          64 GRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPS   97 (119)
T ss_dssp             TTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEecccCCcceecccccCCcCCcceEeeeec
Confidence            4666654      259999999999999999644

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.86  E-value=0.023  Score=30.52  Aligned_cols=29  Identities=21%  Similarity=0.353  Sum_probs=22.4

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|....
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~~  100 (118)
T d2fbjh1          66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLH  100 (118)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeEEEeecCccceeeccccccCCCcceEEEeeEec
Confidence            5666643      3489999999999999996543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.85  E-value=0.022  Score=31.27  Aligned_cols=28  Identities=25%  Similarity=0.478  Sum_probs=22.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      +|+.+..      -.|+|.+++.+|++.|.|-..
T Consensus        67 ~Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          67 TRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHR  100 (132)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceecccccccEEEcccccCCcccceEEEEEEe
Confidence            5666643      249999999999999999654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.84  E-value=0.028  Score=30.27  Aligned_cols=28  Identities=25%  Similarity=0.509  Sum_probs=22.3

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|...
T Consensus        66 gRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          66 GRFTISRDKGKNTVYLQMDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             TTEEEECTTSTTEEEEEECSCCGGGCEEEEEEES
T ss_pred             EeEEEeecCCceEEEEEeeeccccceeEEeeecc
Confidence            4776654      248999999999999999654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.78  E-value=0.023  Score=30.64  Aligned_cols=27  Identities=22%  Similarity=0.556  Sum_probs=21.5

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|..
T Consensus        66 gR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr   98 (121)
T d1j05b_          66 GKATITADTSSNTAYLQLTSLTSEDTAVYYCAP   98 (121)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEEeecCCceeeecccccCcCcceEEEeEe
Confidence            4666643      34899999999999999964

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.66  E-value=0.026  Score=30.22  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=21.5

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|..
T Consensus        66 gRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          66 GKATLTADRSSSIVYLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEeccCccceeeecccccCCCcceEEEEee
Confidence            5666653      34899999999999999954

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.63  E-value=0.026  Score=30.21  Aligned_cols=27  Identities=26%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|..
T Consensus        65 gRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr   97 (117)
T d1um5h1          65 GKATLTSDKSSNTAYLELSSLTSEDSAVYYCAR   97 (117)
T ss_dssp             TCEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEeccCceeEeecccccCCCcceEEEEee
Confidence            5666643      24899999999999999954

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.62  E-value=0.046  Score=29.25  Aligned_cols=31  Identities=10%  Similarity=0.359  Sum_probs=23.6

Q ss_pred             CCceEEeC------CeEEEcCCCCCCCeEEEEEeccC
Q psy11131          9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSNI   39 (150)
Q Consensus         9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~   39 (150)
                      ..|+.+..      ..|+|.+++.+|++.|+|-....
T Consensus        65 ~gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          65 QGSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             eeeeeeecccccceEEEeecccCcCcceEEEEeEcCC
Confidence            35666653      24999999999999999976543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.62  E-value=0.026  Score=30.40  Aligned_cols=28  Identities=18%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        66 gR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          66 DKATLTVDRSSTTAYIELVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             hcceeeeccCcceEEccccccCCCcceEEEeeec
Confidence            4666643      348999999999999999643

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.59  E-value=0.025  Score=30.58  Aligned_cols=28  Identities=21%  Similarity=0.399  Sum_probs=22.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-..
T Consensus        66 gR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~   99 (123)
T d1mqkh_          66 GRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRH   99 (123)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEEecCcccccccceeeeccCcccceeEEec
Confidence            5666653      348999999999999999644

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.58  E-value=0.027  Score=30.44  Aligned_cols=28  Identities=21%  Similarity=0.449  Sum_probs=22.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|...
T Consensus        66 gRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~   99 (122)
T d1bz7b1          66 GRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRG   99 (122)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEeccCCccEeEeeeeeecccCceEEEeecC
Confidence            5666653      358999999999999999643

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.57  E-value=0.027  Score=30.15  Aligned_cols=19  Identities=32%  Similarity=0.714  Sum_probs=17.1

Q ss_pred             eEEEcCCCCCCCeEEEEEe
Q psy11131         18 ILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+|.+++.+|++.|+|-.
T Consensus        80 ~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          80 YMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeecccCCCcceEEEEec
Confidence            5899999999999999953

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.52  E-value=0.028  Score=30.62  Aligned_cols=28  Identities=18%  Similarity=0.465  Sum_probs=22.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|...
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~   99 (128)
T d2nxyd1          66 GRVTITADKSTSTVYLELRNLRSDDTAVYFCAGV   99 (128)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEeecCCCceEEeeeeeccccCceEEEEeEE
Confidence            5666643      348999999999999999643

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.52  E-value=0.028  Score=30.56  Aligned_cols=28  Identities=21%  Similarity=0.514  Sum_probs=21.8

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|...
T Consensus        66 gR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          66 GRITITADRSTSTAYLELNSLRPEDTAVYYCARE   99 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEeccCccceEeeeecccCcccceEEEEeec
Confidence            5666653      358999999999999999643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.50  E-value=0.029  Score=29.89  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-.
T Consensus        66 gRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          66 GRFTISRDNAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             eeEEEeccCccceeeeeeeeeccCcccEEEECC
Confidence            5666653      24899999999999999964

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.50  E-value=0.027  Score=30.22  Aligned_cols=26  Identities=23%  Similarity=0.477  Sum_probs=20.9

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEE
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCS   35 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~   35 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCA   97 (118)
T d2jelh1          66 GKATMTVDKSSSTAYMELARLTSEDSAIYYCA   97 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             ccEEEecccCcceEeecccccccCcceeeeEE
Confidence            4666553      3589999999999999994

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.41  E-value=0.029  Score=30.35  Aligned_cols=28  Identities=25%  Similarity=0.545  Sum_probs=22.3

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-..
T Consensus        65 gR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~   98 (124)
T d1zvya1          65 GRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGAT   98 (124)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cccEEecccccceeeceeccccCCcceEEEEeec
Confidence            5666653      358999999999999999654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.39  E-value=0.03  Score=30.05  Aligned_cols=27  Identities=22%  Similarity=0.507  Sum_probs=21.4

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|..
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          66 VKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEEcccCcceEEeeeecccCCcceEEEEEE
Confidence            4666643      35899999999999999954

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=93.33  E-value=0.031  Score=29.94  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=21.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|.|.+++.+|++.|+|-.
T Consensus        66 gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr   98 (118)
T d1ct8b1          66 DKARLTVDTSSSTAYMQFSSLTTEDSAIYYCAR   98 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEecCccceEEecccccCCCcceEEEEee
Confidence            4555543      35899999999999999954

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.33  E-value=0.055  Score=29.12  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=22.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        66 gR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeeEEeccccceeEEeeeeecccccceEEEEEEe
Confidence            4666654      359999999999999999644

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.32  E-value=0.031  Score=30.27  Aligned_cols=28  Identities=25%  Similarity=0.403  Sum_probs=22.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-..
T Consensus        66 gRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~   99 (125)
T d1op3h1          66 GRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARK   99 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEeccCccceEeeeeeccCCccceeEeEeec
Confidence            5666643      358999999999999999643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.32  E-value=0.027  Score=30.63  Aligned_cols=28  Identities=25%  Similarity=0.532  Sum_probs=21.9

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|...
T Consensus        66 gR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr~   99 (127)
T d2fb4h1          66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARD   99 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceEEEeccCCccEEEeeeeeeeecceeEEEEEEe
Confidence            5666643      358999999999999999644

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=93.31  E-value=0.032  Score=29.97  Aligned_cols=28  Identities=32%  Similarity=0.553  Sum_probs=21.8

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-..
T Consensus        66 gR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          66 SRISITRDTSKNQFFLQLNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceEecccccceeeccccccccCCceEEEEeEe
Confidence            4666654      358999999999999999543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.28  E-value=0.032  Score=30.07  Aligned_cols=28  Identities=18%  Similarity=0.455  Sum_probs=21.8

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-..
T Consensus        67 gR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EeeEEeccCCcceeeecccccCCCcceEEEEeec
Confidence            5666643      248999999999999999654

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.27  E-value=0.027  Score=30.13  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=21.5

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-.
T Consensus        66 gR~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          66 DRFTISRDKSKNTLYLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             TTEEEECCTTTTEEEEEECSCCGGGCEEEECCE
T ss_pred             eeEEEEeccccceEEeeeccccCCcceEEEEcc
Confidence            4666654      35899999999999999953

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.20  E-value=0.031  Score=30.44  Aligned_cols=28  Identities=25%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        71 gR~tis~d~s~~~~~L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          71 GRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeEeccCCceEEEEeeecccccceeEEEEEEE
Confidence            4666643      358999999999999999643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=93.19  E-value=0.026  Score=30.20  Aligned_cols=20  Identities=20%  Similarity=0.639  Sum_probs=17.7

Q ss_pred             eEEEcCCCCCCCeEEEEEec
Q psy11131         18 ILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+|.+++.+|++.|+|-..
T Consensus        79 ~L~~~~l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          79 FLKMNSLHTDDTARYYCARE   98 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcceeeeeeccceEEEEEEe
Confidence            48999999999999999643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.16  E-value=0.034  Score=30.18  Aligned_cols=28  Identities=21%  Similarity=0.503  Sum_probs=21.4

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      +|+.+..      ..|+|.+++.+|++.|+|-..
T Consensus        66 ~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          66 DKAILTADRSSNTAFMYLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEecccCcceEeeeeeccCcccceEEEEeee
Confidence            4655543      348999999999999999643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=93.14  E-value=0.067  Score=29.19  Aligned_cols=59  Identities=20%  Similarity=0.448  Sum_probs=37.1

Q ss_pred             EEecCCcEEEEEEec-CCCCCCcEEEEeec--Cccc------CC-------------Ccc----------eeeEEEccCC
Q psy11131         65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQI------PG-------------RTS----------STSLVINPVG  112 (150)
Q Consensus        65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~------~~-------------~~~----------~~~l~~~~~~  112 (150)
                      .+..|+++.|.|.+. ..- ....+.|.+.  ++.+      ..             ..+          ...|.++++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~-s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTF-SDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCCCC-cCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            567899999999986 320 0335566542  1110      00             000          2458888999


Q ss_pred             CCCCceEEEEEE
Q psy11131        113 REDRGIYQCIAR  124 (150)
Q Consensus       113 ~~~~g~y~C~~~  124 (150)
                      .+|...|.|...
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999754

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.08  E-value=0.036  Score=30.08  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|..
T Consensus        66 gR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr   98 (126)
T d1dfbh1          66 GRFTISRDNAKNSLYLQMNSLRAEDMALYYCVK   98 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEeccCCCcEEEeeeeeeccCcceEEEEEe
Confidence            5666654      34899999999999999954

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.00  E-value=0.036  Score=29.81  Aligned_cols=28  Identities=21%  Similarity=0.423  Sum_probs=21.9

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        66 gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          66 GKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEEEEECGGGCEEEEEEEC
T ss_pred             ccceeecccccceeeeeecccCccceeEEEEEEe
Confidence            4666643      348999999999999999654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=92.97  E-value=0.033  Score=30.03  Aligned_cols=29  Identities=31%  Similarity=0.477  Sum_probs=22.6

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|....
T Consensus        68 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDH  102 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             ecceeeeecccceeccceeeeccCcceEEEEEecC
Confidence            5666653      3489999999999999997543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=92.95  E-value=0.029  Score=30.36  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=21.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-.
T Consensus        67 ~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr   99 (123)
T d1r0ah1          67 SRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQ   99 (123)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEccccccceeEEcceeecccccceEEeecc
Confidence            4665543      34999999999999999963

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.94  E-value=0.039  Score=29.41  Aligned_cols=27  Identities=19%  Similarity=0.495  Sum_probs=21.3

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-.
T Consensus        66 gR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeeeEecccccceeEecccccCCCCceEEEEcc
Confidence            4666643      35889999999999999953

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=92.93  E-value=0.038  Score=30.18  Aligned_cols=28  Identities=21%  Similarity=0.485  Sum_probs=21.9

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        68 gR~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          68 GRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEecccccceeecceeccccCCceEEEEecc
Confidence            5666644      348999999999999999643

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.92  E-value=0.039  Score=29.92  Aligned_cols=27  Identities=22%  Similarity=0.509  Sum_probs=21.4

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-.
T Consensus        65 gRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          65 GKATFTADTSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence            5666642      35899999999999999953

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.92  E-value=0.039  Score=29.97  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        65 gR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~   98 (126)
T d1rjca1          65 GRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAAD   98 (126)
T ss_dssp             TTEEEEEEC--CEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEEecCCceEEEEEEeccCcccCceeEEEee
Confidence            4666653      348999999999999999654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.91  E-value=0.037  Score=29.73  Aligned_cols=27  Identities=19%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|..
T Consensus        66 gRftiS~D~s~nt~~L~m~~L~~eDTAvYYCAr   98 (120)
T d1ad9b1          66 GRATLTVDTSTNTAYMELSSLRSEDTAFYFCAR   98 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEecCcceEEeccccccCCCcceEEEEEE
Confidence            5665543      35899999999999999964

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.78  E-value=0.042  Score=29.83  Aligned_cols=27  Identities=15%  Similarity=0.457  Sum_probs=21.3

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|--
T Consensus        66 gR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          66 DRVTFTADTSANTAYMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceEecccCceEEEEEEEccCCCCceEEEEEe
Confidence            5666654      34899999999999999953

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=92.77  E-value=0.042  Score=29.50  Aligned_cols=28  Identities=29%  Similarity=0.497  Sum_probs=22.0

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        68 gRftiS~D~s~n~~~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          68 GRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeecccccceeccceeeccCCCceEEEeeEe
Confidence            5666643      358999999999999999643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=92.64  E-value=0.052  Score=28.04  Aligned_cols=21  Identities=33%  Similarity=0.357  Sum_probs=17.0

Q ss_pred             eEEEcCCCCCCCeEEEEEecc
Q psy11131         18 ILAIEGVTAEDSGTYRCSSSN   38 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~~   38 (150)
                      .+.|..++..|+|.|+|....
T Consensus        60 ~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          60 QADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             EEEEEEEECCSCEEEEEEEEE
T ss_pred             EEEEeccccccCEEEEEEeec
Confidence            457888889999999997653

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.39  E-value=0.05  Score=29.66  Aligned_cols=28  Identities=14%  Similarity=0.462  Sum_probs=21.8

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      -.|+|.+++.+|++.|.|...
T Consensus        65 gR~tis~D~s~~tv~L~~~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          65 GRVTFTADQATSTAYMELTNLRSDDTAVYYCARD   98 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEeccCCccEEEEEeeccCCCCcEEEEEEee
Confidence            5666654      348999999999999999643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.36  E-value=0.051  Score=29.75  Aligned_cols=28  Identities=25%  Similarity=0.580  Sum_probs=21.9

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|++.+++.+|++.|.|-..
T Consensus        65 gR~tis~D~s~~t~~L~~~~L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          65 GRVTISADESTRTVYLHLRGLRSDDTAVYYCASN   98 (133)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccEEEEeccCcceeEEeeccCCCCCCEEEEeeec
Confidence            5666644      348999999999999999543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=92.25  E-value=0.048  Score=29.19  Aligned_cols=28  Identities=21%  Similarity=0.412  Sum_probs=21.6

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|+|.+++.+|++.|.|-..
T Consensus        65 gR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          65 GRFTISRDIVRNILTLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             TTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEeccccceeeeeccccccCCcceEEEeccc
Confidence            4665543      358999999999999999643

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.21  E-value=0.05  Score=29.40  Aligned_cols=27  Identities=15%  Similarity=0.330  Sum_probs=21.1

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+.+..      ..|+|.+++.+|++.|+|-.
T Consensus        66 gR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          66 GQVTMSADRSTNTAHLQWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             TTCEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             eeEEEeecCCCcEEEEeeeccccccceEEEEee
Confidence            5665543      35899999999999999953

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.07  E-value=0.052  Score=29.31  Aligned_cols=28  Identities=18%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      ..|.|.+++.+|++.|+|-..
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          66 GKATLTADKSSSTAYMQLSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEC
T ss_pred             eeEEEEccCCcceEEecccccCCCcceEEEeccc
Confidence            5666643      348999999999999999643

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.05  E-value=0.054  Score=29.51  Aligned_cols=28  Identities=18%  Similarity=0.507  Sum_probs=21.5

Q ss_pred             CceEEeC------CeEEEcCCCCCCCeEEEEEec
Q psy11131         10 PRTRVLG------PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|+.+..      -.|+|.+++.+|++.|.|-..
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          66 GRVSITADESTSTAYMELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEecccccceEEeeeeecCCCccEEEEEEEe
Confidence            4666643      238899999999999999643

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=91.99  E-value=0.035  Score=30.17  Aligned_cols=20  Identities=40%  Similarity=0.710  Sum_probs=17.6

Q ss_pred             CeEEEcCCCCCCCeEEEEEe
Q psy11131         17 PILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~   36 (150)
                      ..|+|.+++.+|++.|.|-.
T Consensus        79 ~yL~l~~l~~eDtAvYyCAr   98 (127)
T d3cx5j1          79 FFLKLNSVTTEDTATYYCAR   98 (127)
T ss_dssp             EEEEECSCCGGGCEEEEEEE
T ss_pred             eecceeccccccceEEEeee
Confidence            35899999999999999963

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.93  E-value=0.027  Score=30.34  Aligned_cols=19  Identities=21%  Similarity=0.611  Sum_probs=17.1

Q ss_pred             eEEEcCCCCCCCeEEEEEe
Q psy11131         18 ILAIEGVTAEDSGTYRCSS   36 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~   36 (150)
                      .|+|.+++.+|++.|+|-.
T Consensus        82 yL~~~~L~~eDTAvYYCAr  100 (121)
T d1nfdf1          82 YLQMNRLRVDDTAIYYCTR  100 (121)
T ss_dssp             EEEEESCCGGGCEECEEEE
T ss_pred             eceecccCCCcceEEEEec
Confidence            4899999999999999954

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.51  E-value=0.035  Score=29.69  Aligned_cols=20  Identities=30%  Similarity=0.801  Sum_probs=17.2

Q ss_pred             eEEEcCCCCCCCeEEEEEec
Q psy11131         18 ILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        18 ~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      .|++.+++.+|++.|.|-..
T Consensus        79 ~L~~~~L~~eDTAvYyCAr~   98 (116)
T d1fn4b1          79 FLKMNSLQTDDTGTYYCTRD   98 (116)
T ss_dssp             ECCEESCCCCCCEEEEEEEE
T ss_pred             hcceeccCCCCCEEEEEEee
Confidence            47889999999999999543

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.37  Score=23.16  Aligned_cols=46  Identities=22%  Similarity=0.333  Sum_probs=28.7

Q ss_pred             CcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEE
Q psy11131         70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR  124 (150)
Q Consensus        70 ~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~  124 (150)
                      +.+.|.|.        ..+.|++++..+.... ...+-+-....+-.|.|.|...
T Consensus        10 ~~V~L~Cn--------~si~W~k~~~~~~~~~-~k~lnLG~~~~DPRG~Y~C~~~   55 (74)
T d1xiwb_          10 DRVFVNCN--------TSITWVEGTVGTLLSD-ITRLDLGKRILDPRGIYRCNGT   55 (74)
T ss_dssp             TEEEEECS--------SCEEEEEECCCEEEGG-GTEEEEEEGGGCCEEEEEEC--
T ss_pred             CeEEEEcc--------CeeEEecCCcccccCC-ccEeecCCcccCCCcceEeCCc
Confidence            46888893        3588998764332222 3456666666667899999755

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.52  E-value=0.87  Score=23.35  Aligned_cols=63  Identities=16%  Similarity=0.267  Sum_probs=41.5

Q ss_pred             CCcEEEecCCcEEEEEEec-C----CCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEE
Q psy11131         61 PPLLSVHLDGSANFQCEIT-P----YDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIA  123 (150)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~----p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~  123 (150)
                      +..-.+..|+++...|.+. .    .+.....+.|..++..++....      ..++++.++....+-.+.|..
T Consensus        10 p~~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~~qy~~ln~T~~Svtl~~l~~~~a~L~C~~l   83 (100)
T d1i1ra1          10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNIL   83 (100)
T ss_dssp             SSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCSEEEEEEEEE
T ss_pred             cCCCeEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECCchheEccCCcEEEEEEccccCCcceeEEEEe
Confidence            3344678899999999996 2    1112578999998887654322      456888887766554444444

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.16  E-value=0.01  Score=30.95  Aligned_cols=60  Identities=17%  Similarity=0.271  Sum_probs=34.0

Q ss_pred             EecCCcEEEEEEec-C--CCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCC---CceEEEEEEeCC
Q psy11131         66 VHLDGSANFQCEIT-P--YDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGRED---RGIYQCIARRSD  127 (150)
Q Consensus        66 ~~~g~~~~l~C~~~-~--p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~---~g~y~C~~~~~~  127 (150)
                      +..+..+.|.|.+. .  |.  ...+.|..++........        ........+..++   ...|.|.|....
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~--~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDAS--GVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPE   88 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCC--CCCCCBSSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSS
T ss_pred             HccCCCeEEEEEEeCCCCCc--ceEEEEEECCceeeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCC
Confidence            44577899999997 4  31  458999876643211000        1122222333332   457999999654

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.88  E-value=0.021  Score=30.49  Aligned_cols=62  Identities=13%  Similarity=0.295  Sum_probs=34.0

Q ss_pred             EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131         66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSD  127 (150)
Q Consensus        66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~  127 (150)
                      +..+..+.|.|.+.  .|......+.|.+++........             .+.|.+..-.-...-.|+|.|....
T Consensus        26 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ytC~V~H~~  102 (116)
T d1igyb3          26 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAA  102 (116)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSS
T ss_pred             cccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            34578899999998  45211235567777654321110             2344443322122446999998654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.26  E-value=0.41  Score=24.76  Aligned_cols=37  Identities=24%  Similarity=0.181  Sum_probs=22.0

Q ss_pred             CeEEEcCCCCCCCe-EEEEEeccCCcc-------eeEEEEEEEecC
Q psy11131         17 PILAIEGVTAEDSG-TYRCSSSNIGGE-------ATAEVRLQVSTP   54 (150)
Q Consensus        17 ~~l~i~~~~~~d~G-~Y~C~~~~~~~~-------~~~~~~l~v~~~   54 (150)
                      ..|.+. ++..|.| .|+|++.+..+.       ......|.|+.+
T Consensus        64 s~l~~~-~~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          64 LEVTFT-PVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEEEC-CCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEEcc-CChHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeC
Confidence            345654 5555655 899999875432       123345666654

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=86.97  E-value=0.2  Score=26.21  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=18.1

Q ss_pred             CeEEEcCCCCCCCeEEEEEec
Q psy11131         17 PILAIEGVTAEDSGTYRCSSS   37 (150)
Q Consensus        17 ~~l~i~~~~~~d~G~Y~C~~~   37 (150)
                      ..|.|..+..+|++.|.|-..
T Consensus        74 ~~l~l~~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          74 TELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             TEEEEEEESCCSCEEEEEEEE
T ss_pred             cEEEEecCCccCCccEEEEEe
Confidence            678888999999999999753

>d2giya1 b.1.1.1 (A:218-394) Alphaherpesvirus glycoprotein E {Human herpesvirus 1 [TaxId: 10298]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Alphaherpesvirus glycoprotein E
species: Human herpesvirus 1 [TaxId: 10298]

Probab=85.43  E-value=2  Score=24.41  Aligned_cols=44  Identities=20%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             CCCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131          8 PGPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS   52 (150)
Q Consensus         8 ~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   52 (150)
                      +..++....  -.|.+.|+..+++|.|.|.+... |...+-....|.
T Consensus       114 ~~~~l~~~~~~v~L~F~~a~~~~sGLYVfV~~~n-gHveaW~Ytlvs  159 (177)
T d2giya1         114 PVPGLAWQAASVNLEFRDASPQHSGLYLCVVYVN-DHIHAWGHITIS  159 (177)
T ss_dssp             CCTTEEECTTSSCEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEE
T ss_pred             cccccccccCCcceEEccCCcccCceEEEEEEEC-CceeeeEEEEEe
Confidence            445566655  57999999999999999988754 555554444333

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=84.26  E-value=0.27  Score=23.12  Aligned_cols=44  Identities=18%  Similarity=0.323  Sum_probs=27.3

Q ss_pred             CcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEE
Q psy11131         70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCI  122 (150)
Q Consensus        70 ~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~  122 (150)
                      +.+.|.|.        ..+.|+++........ ...+-+-....+-.|.|.|.
T Consensus         9 dkV~L~Cn--------~sI~w~k~~~~~~~~~-~ktlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2           9 DKVILKCN--------SSITLLQGTAGQEVSD-NKTLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             TEEEEECS--------SSCEEEEECCCCBSSS-SSBBCCBCSTTCCEEEEECC
T ss_pred             ceEEEEcc--------CeEEEccCccccccCC-CcEEeCCCcccCCCcceECC
Confidence            47888893        2378988754333222 23455555556667999993